AlfalfaGEDB | MS.gene74655

M. sativa cultivar XinJiangDaYe / MS.gene74655

KEGG: K08907
GO: -
PFAM: PF00504.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74655.t1	XP_013451624.1	99.2	242	2	0	1	242	1	242	9.10E-137	496.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74655.t1	Q01667	81.8	242	39	3	1	240	1	239	1.0e-112	407.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74655.t1	A0A072U7I8	99.2	242	2	0	1	242	1	242	6.6e-137	496.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene74655	0.856093	4.06E-62	-1.69E-46
MS.gene049173	MS.gene74655	0.825118	5.58E-54	-1.69E-46
MS.gene049217	MS.gene74655	0.800873	1.18E-48	-1.69E-46
MS.gene049222	MS.gene74655	0.824982	6.01E-54	-1.69E-46
MS.gene049232	MS.gene74655	0.828699	7.78E-55	-1.69E-46
MS.gene049281	MS.gene74655	-0.808681	2.75E-50	-1.69E-46
MS.gene049285	MS.gene74655	0.891082	5.50E-74	-1.69E-46
MS.gene049313	MS.gene74655	-0.803965	2.71E-49	-1.69E-46
MS.gene049320	MS.gene74655	0.886739	2.63E-72	-1.69E-46
MS.gene049633	MS.gene74655	0.827306	1.68E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74655.t1	MTR_6g033320	99.174	242	2	0	1	242	1	242	4.77e-180	493
MS.gene74655.t1	MTR_4g015570	40.000	230	90	5	49	234	57	282	7.02e-45	152
MS.gene74655.t1	MTR_3g435460	37.594	266	121	9	1	238	1	249	1.51e-42	145
MS.gene74655.t1	MTR_8g023790	40.758	211	97	7	49	240	66	267	1.43e-41	143
MS.gene74655.t1	MTR_3g101670	39.048	210	100	6	49	238	61	262	1.62e-40	140
MS.gene74655.t1	MTR_2g042720	40.976	205	93	7	49	234	65	260	2.28e-40	140
MS.gene74655.t1	MTR_6g060175	38.743	191	107	3	56	238	91	279	2.20e-37	132
MS.gene74655.t1	MTR_4g094605	43.147	197	91	7	52	233	64	254	3.32e-36	129
MS.gene74655.t1	MTR_6g011880	42.487	193	91	6	56	233	66	253	3.45e-36	129
MS.gene74655.t1	MTR_6g011870	42.487	193	91	6	56	233	66	253	3.76e-36	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74655.t1	AT3G54890	81.818	242	39	3	1	240	1	239	1.09e-138	389
MS.gene74655.t1	AT3G54890	79.899	199	35	3	1	197	1	196	1.29e-106	306
MS.gene74655.t1	AT3G54890	68.595	242	37	4	1	240	1	205	2.48e-105	303
MS.gene74655.t1	AT3G54890	73.292	161	37	4	1	158	1	158	3.74e-71	215
MS.gene74655.t1	AT3G47470	38.224	259	122	8	1	234	1	246	1.60e-46	155
MS.gene74655.t1	AT3G08940	37.218	266	115	7	16	234	20	280	2.62e-46	155
MS.gene74655.t1	AT5G01530	39.496	238	93	6	44	234	50	283	2.56e-44	150
MS.gene74655.t1	AT3G61470	38.400	250	120	9	15	240	17	256	1.81e-40	140
MS.gene74655.t1	AT1G45474	37.327	217	101	5	47	239	47	252	2.57e-40	139
MS.gene74655.t1	AT1G45474	37.327	217	101	5	47	239	47	252	2.57e-40	139

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Find 70 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAAAGAAGTTAAGAA+TGG	0.539315	6.3:-22826004	MS.gene74655:intron
AAAGGATCAAAAGCACCACC+AGG	0.562866	6.3:+22826064	None:intergenic
AACTGGACCTTTGGAGAATT+TGG	0.160780	6.3:-22825470	MS.gene74655:CDS
AAGGAATTCAATGACCAAAA+TGG	0.388111	6.3:+22826147	None:intergenic
AAGGATCAAAAGCACCACCA+GGG	0.706196	6.3:+22826065	None:intergenic
AATGACCAAAATGGTGGGTA+GGG	0.541785	6.3:+22826156	None:intergenic
AATTCAATGACCAAAATGGT+GGG	0.634135	6.3:+22826151	None:intergenic
ACCCTGGAGCTGAACCATCA+AGG	0.592237	6.3:+22828189	None:intergenic
ACCTAGGAAACCCTGTTCCA+TGG	0.497834	6.3:-22826183	MS.gene74655:CDS
ACCTTGATGGTTCAGCTCCA+GGG	0.491528	6.3:-22828190	MS.gene74655:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGACTTGAAGCTTCATA+AGG	-	chr6.3:22826208-22826227	MS.gene74655:CDS	30.0%
AAGGAATTCAATGACCAAAA+TGG	+	chr6.3:22827626-22827645	None:intergenic	30.0%
AATATCTAGACCGTTTGAAA+CGG	-	chr6.3:22827267-22827286	MS.gene74655:intron	30.0%
AATTCAATGACCAAAATGGT+GGG	+	chr6.3:22827622-22827641	None:intergenic	30.0%
ATAAATGCTCAGTTGTGTAT+TGG	+	chr6.3:22826340-22826359	None:intergenic	30.0%
ATGGTGTATGAATAATGTTG+TGG	-	chr6.3:22826858-22826877	MS.gene74655:CDS	30.0%
CAAATAACACCACCTTTAAA+GGG	-	chr6.3:22826425-22826444	MS.gene74655:intron	30.0%
CATCCTTATAGACCTTTATT+TGG	-	chr6.3:22826609-22826628	MS.gene74655:intron	30.0%
CTAGATCAAACAGTCTAAAT+CGG	-	chr6.3:22827291-22827310	MS.gene74655:intron	30.0%
GAATGTATAAATACATACCC+TGG	+	chr6.3:22825600-22825619	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	22825408	22828384	22825408	ID=MS.gene74655
chr6.3	mRNA	22825408	22828384	22825408	ID=MS.gene74655.t1;Parent=MS.gene74655
chr6.3	exon	22828191	22828384	22828191	ID=MS.gene74655.t1.exon1;Parent=MS.gene74655.t1
chr6.3	CDS	22828191	22828384	22828191	ID=cds.MS.gene74655.t1;Parent=MS.gene74655.t1
chr6.3	exon	22826795	22826897	22826795	ID=MS.gene74655.t1.exon2;Parent=MS.gene74655.t1
chr6.3	CDS	22826795	22826897	22826795	ID=cds.MS.gene74655.t1;Parent=MS.gene74655.t1
chr6.3	exon	22826005	22826293	22826005	ID=MS.gene74655.t1.exon3;Parent=MS.gene74655.t1
chr6.3	CDS	22826005	22826293	22826005	ID=cds.MS.gene74655.t1;Parent=MS.gene74655.t1
chr6.3	exon	22825408	22825550	22825408	ID=MS.gene74655.t1.exon4;Parent=MS.gene74655.t1
chr6.3	CDS	22825408	22825550	22825408	ID=cds.MS.gene74655.t1;Parent=MS.gene74655.t1

Gene Sequence

>MS.gene74655

ATGGCTTGTAACACATTGATGAGTTCTGCTATCTCAGCATTTCCATCACTTCTTTCTTCCTCAAAATCAAGATTTTCAACTTCACTTCCACTTCCTTGCACTGCTTCTACAAATGCTTCTTCTAGATTCACCATGACTTCTGATTGGATGCCTGGTCAGCCTAGACCACCTTACCTTGATGGTTCAGCTCCAGGGTATGTATTTATACATTCATATTTTATGTTTCTTTTGTTAAATATTAATTAAATTTAAACTTGTATCAAGAGAGTTGAATTGTTGTAGTGGCATTTTAATTTTAGTTAGTTCAATTTTGTTTGAGAAAATTTTAGTTAGTGCCTTTTAATATTCTAACATGTCACACATGCTATTATAATTATTATTTTTTTTGAAGAGGCTAAAATGAAATATAATACCACATCAAAAAGGTATTCCTAGCACAAGGTGTGCCAAGGAAGTAACACCTAAATACAGATAGAGTCTGAATCAAAAAACAAATAATTACACTGCTGAAAGCAAACCACCAAAGGAAACAGAAGAAAAGAAATCAGCCTATACCCAGTATAGTAAACGGACTGTGCCACCAACCATGGTAGTTGAGAGAAAGACTGACAAGTTTCTCCTTTAACCACATGAAGGATAAAGCCTTGATTTTGTCCACCACCTGCTGAACGGAGCAATTTTTTACATTAAAGATTTGATTATTTCTTTCCTTCCATATTTCCCACACCATGGCAAACCAAATGACCTGTAACAGAGAGCGGCTAGACTTTGCTACACCACCAAGATAACTGAATTGATAAAAATGACTTGAAGCTTCATAAGGTAAAGCAGTAAATACTCCAAGCCACCTAAGGATATAGTTCCAAACTAAACCAAAAAATTTACAATGAAATAATAAGTGAGAAGAAGTTTCCTCTTCACCACACCCTCCAATACACAACTGAGCATTTATATCAATAACATGACGGCGGTAAAGGTTGTCTTTAGTCGGAAGCTTGTCACGAAATAGGCGCCAAGCAAATAACACCACCTTTAAAGGGACGTCCTTATGCCACAGAGAAGACACAGGCACCACAAGATCAACAGTAACATTAGCATTTAGATAATTATTATTTTTTTACTAATAAACACTTCTATATTATAAGTATGGACACTCCTAAGTTTAGGTGTGTGTGGATGTTCGACGTGTGTCGAACACGGACATCCTTATAGACCTTTATTTGGTTAAGAAAATTGAAGTTGTCGGTAAATTAGTGATTGTTCGTTCAAAATATGGACAGTCTGATCTTGATCCAACGACCATTGATAGCCCAACCGCATGAATGCGGAAAATTGATGAAGAAAATTTTAGTCACCTCTCCTCATATTAATTGAGGGGAGCTGAAGTTATTTACAAAATAATTTTTAAAAGTTAAAGGTAATTTTTTTTTTTTTTTTTTGTGATTATGATATGGTGTATGAATAATGTTGTGGTTTTTGTGTTACAGTGACTTTGGATTTGATCCTCTACGTCTTGGTGAAGTACCTGAGAATCTTGAGAGATTCAAAGAGTCTGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTGTAAGTATCTCTCTTTTCAAGAAAATAAGTTTAGTTTTCTTTTGGCATTATTAACTAGTAGCCGTGAAACCGAACGGTTTTGATTTAACGGTTCAGATTAGTTGATTGTACGCAAAAATGAGATATGTACTGTCAGTGTATACTAGTTTTACACGGATGTTCAATGAGAATCCAGTACTTCATAGTTGTTTTCAATATCGATATTAGGTAGGTTTAATGGAATCGGCCCATCGATGGCTGTTGAATCGAGATCAAACGGTCTAGATTTCAATATCTAGACCGTTTGAAACGGTCTAGATCAAACAGTCTAAATCGGCCCATCTGATGAACCGTTTGAAATCTAGACCGTTTGATCTCGATCCAACAGCCATTGACCGTTTAAACCTACCTAGGTTTACGTGGCAATGTGACGATTTTTCGTCGAATATCAGTGTAAAACTATTTTACACAGACAGTGAATTTCATTAAAATTTACTAAAATTTGTTACATTATGCATGCAGCCAGGGATTTTGGTACCAGAGGCATTGGGATTAGGCAACTGGGTAAAAGCACAAGAATGGGCAGCACTTCCTGGAGGACAAGCAACCTACCTAGGAAACCCTGTTCCATGGGGAACCCTACCCACCATTTTGGTCATTGAATTCCTTTCTATTGCTTTTGTTGAGCACCAAAGGAGTATGGAGAAAGACCCTGAAAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGATACTCTAAAGACCCTAAAAAGTTCCATGAATACAAAATCAAAGAAGTTAAGAATGGTAAGCAAGAGCTTTTTGTCACACTATACAACACCTAAGATAGATATAGATATGTTATTTGAACATCGATCCGTGACACTAAAATTCGACAACATTTTAAATGAGTAACACGTTTCACACACGAGGTTAACACGGTGCGATCAGTGGTTATTAGATAACTCGTTAATCATCAACTGAAAAATATTAACGATGAAATTTGAACATGATTAATCAAGATGTTTCAACTACATGTAGATTTGAATACCTGAAAATCATGGTTAATCGCGTTCAAATTCACGGTTGATGAAGTTAATGAGTTGCAACACATGATATATTTATTAACCATACGTGTAAACTGCGTTAACCATTTAAATGTTGTCGAATTTAAGTGTCCATATTGATGTTCAAATAACATTTTTTTAATAGAAAATTGATAAAATGTGTTACTTACTACTTTGTTGAATGTTTGTATTAGGACGTCTTGCTTTGTTGGCTTTTGTTGGAATCTGTGTTCAACAAACAGCATATCCAGGAACTGGACCTTTGGAGAATTTGGCAACTCATTTGGCTGATCCATGGCACAACAACATTGGAAATGTCCTTATTCCCCCACAATAG

Protein sequence

>MS.gene74655.t1

MACNTLMSSAISAFPSLLSSSKSRFSTSLPLPCTASTNASSRFTMTSDWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGNVLIPPQ