Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80804.t1 | XP_003616603.2 | 98 | 450 | 9 | 0 | 3 | 452 | 65 | 514 | 2.00E-246 | 861.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80804.t1 | Q0JQS5 | 74.4 | 403 | 102 | 1 | 50 | 452 | 143 | 544 | 2.2e-177 | 623.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80804.t1 | G7KGX9 | 98.0 | 450 | 9 | 0 | 3 | 452 | 65 | 514 | 1.4e-246 | 861.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene80804 | 0.860748 | 1.66E-63 | -1.69E-46 |
| MS.gene049217 | MS.gene80804 | 0.832343 | 9.98E-56 | -1.69E-46 |
| MS.gene049222 | MS.gene80804 | 0.834143 | 3.55E-56 | -1.69E-46 |
| MS.gene049285 | MS.gene80804 | 0.9001 | 1.03E-77 | -1.69E-46 |
| MS.gene049320 | MS.gene80804 | 0.88609 | 4.63E-72 | -1.69E-46 |
| MS.gene04939 | MS.gene80804 | 0.81501 | 1.15E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene80804 | 0.805549 | 1.27E-49 | -1.69E-46 |
| MS.gene049633 | MS.gene80804 | 0.824765 | 6.76E-54 | -1.69E-46 |
| MS.gene05010 | MS.gene80804 | 0.835901 | 1.28E-56 | -1.69E-46 |
| MS.gene050163 | MS.gene80804 | 0.870341 | 1.57E-66 | -1.69E-46 |
| MS.gene050165 | MS.gene80804 | 0.881732 | 1.88E-70 | -1.69E-46 |
| MS.gene050170 | MS.gene80804 | 0.822301 | 2.55E-53 | -1.69E-46 |
| MS.gene050323 | MS.gene80804 | 0.844836 | 5.91E-59 | -1.69E-46 |
| MS.gene050333 | MS.gene80804 | 0.890703 | 7.75E-74 | -1.69E-46 |
| MS.gene050444 | MS.gene80804 | 0.882794 | 7.73E-71 | -1.69E-46 |
| MS.gene050496 | MS.gene80804 | 0.856279 | 3.58E-62 | -1.69E-46 |
| MS.gene050504 | MS.gene80804 | 0.886518 | 3.19E-72 | -1.69E-46 |
| MS.gene050518 | MS.gene80804 | 0.86212 | 6.35E-64 | -1.69E-46 |
| MS.gene050577 | MS.gene80804 | 0.825961 | 3.52E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene80804 | 0.906433 | 1.49E-80 | -1.69E-46 |
| MS.gene050675 | MS.gene80804 | 0.875582 | 2.75E-68 | -1.69E-46 |
| MS.gene050699 | MS.gene80804 | 0.882907 | 7.03E-71 | -1.69E-46 |
| MS.gene050772 | MS.gene80804 | 0.838888 | 2.20E-57 | -1.69E-46 |
| MS.gene05079 | MS.gene80804 | -0.823963 | 1.04E-53 | -1.69E-46 |
| MS.gene05080 | MS.gene80804 | 0.812184 | 4.82E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene80804 | 0.831293 | 1.81E-55 | -1.69E-46 |
| MS.gene050871 | MS.gene80804 | 0.8265 | 2.62E-54 | -1.69E-46 |
| MS.gene050876 | MS.gene80804 | 0.875682 | 2.54E-68 | -1.69E-46 |
| MS.gene050904 | MS.gene80804 | 0.826618 | 2.46E-54 | -1.69E-46 |
| MS.gene050986 | MS.gene80804 | 0.875482 | 2.98E-68 | -1.69E-46 |
| MS.gene05100 | MS.gene80804 | 0.828098 | 1.09E-54 | -1.69E-46 |
| MS.gene051138 | MS.gene80804 | -0.818679 | 1.73E-52 | -1.69E-46 |
| MS.gene051228 | MS.gene80804 | 0.839029 | 2.02E-57 | -1.69E-46 |
| MS.gene051317 | MS.gene80804 | 0.875145 | 3.88E-68 | -1.69E-46 |
| MS.gene051364 | MS.gene80804 | -0.811919 | 5.50E-51 | -1.69E-46 |
| MS.gene051366 | MS.gene80804 | -0.824497 | 7.82E-54 | -1.69E-46 |
| MS.gene051551 | MS.gene80804 | 0.808474 | 3.04E-50 | -1.69E-46 |
| MS.gene051617 | MS.gene80804 | 0.806534 | 7.85E-50 | -1.69E-46 |
| MS.gene051810 | MS.gene80804 | 0.877436 | 6.30E-69 | -1.69E-46 |
| MS.gene051858 | MS.gene80804 | 0.811735 | 6.04E-51 | -1.69E-46 |
| MS.gene051949 | MS.gene80804 | 0.884871 | 1.32E-71 | -1.69E-46 |
| MS.gene052129 | MS.gene80804 | -0.852088 | 5.80E-61 | -1.69E-46 |
| MS.gene052164 | MS.gene80804 | 0.800914 | 1.15E-48 | -1.69E-46 |
| MS.gene052271 | MS.gene80804 | 0.816435 | 5.54E-52 | -1.69E-46 |
| MS.gene052379 | MS.gene80804 | 0.815152 | 1.07E-51 | -1.69E-46 |
| MS.gene052486 | MS.gene80804 | 0.806848 | 6.74E-50 | -1.69E-46 |
| MS.gene052822 | MS.gene80804 | 0.819794 | 9.63E-53 | -1.69E-46 |
| MS.gene052870 | MS.gene80804 | 0.837509 | 4.98E-57 | -1.69E-46 |
| MS.gene052872 | MS.gene80804 | 0.852692 | 3.91E-61 | -1.69E-46 |
| MS.gene052916 | MS.gene80804 | 0.833298 | 5.78E-56 | -1.69E-46 |
| MS.gene052966 | MS.gene80804 | 0.815338 | 9.73E-52 | -1.69E-46 |
| MS.gene053203 | MS.gene80804 | 0.804835 | 1.79E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene80804 | 0.829483 | 5.02E-55 | -1.69E-46 |
| MS.gene053284 | MS.gene80804 | 0.828862 | 7.10E-55 | -1.69E-46 |
| MS.gene053285 | MS.gene80804 | 0.811134 | 8.15E-51 | -1.69E-46 |
| MS.gene053286 | MS.gene80804 | 0.833213 | 6.07E-56 | -1.69E-46 |
| MS.gene053420 | MS.gene80804 | -0.801757 | 7.75E-49 | -1.69E-46 |
| MS.gene053479 | MS.gene80804 | 0.827296 | 1.69E-54 | -1.69E-46 |
| MS.gene053561 | MS.gene80804 | -0.817055 | 4.02E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene80804 | 0.844506 | 7.25E-59 | -1.69E-46 |
| MS.gene053824 | MS.gene80804 | 0.845689 | 3.47E-59 | -1.69E-46 |
| MS.gene053916 | MS.gene80804 | 0.829952 | 3.86E-55 | -1.69E-46 |
| MS.gene054555 | MS.gene80804 | -0.802787 | 4.75E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene80804 | 0.84459 | 6.88E-59 | -1.69E-46 |
| MS.gene054642 | MS.gene80804 | 0.868137 | 8.16E-66 | -1.69E-46 |
| MS.gene05470 | MS.gene80804 | 0.836958 | 6.90E-57 | -1.69E-46 |
| MS.gene054954 | MS.gene80804 | 0.895721 | 7.32E-76 | -1.69E-46 |
| MS.gene054959 | MS.gene80804 | -0.821239 | 4.49E-53 | -1.69E-46 |
| MS.gene055134 | MS.gene80804 | -0.802943 | 4.41E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene80804 | 0.815603 | 8.49E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene80804 | 0.885057 | 1.13E-71 | -1.69E-46 |
| MS.gene055502 | MS.gene80804 | 0.875785 | 2.34E-68 | -1.69E-46 |
| MS.gene055577 | MS.gene80804 | 0.870693 | 1.20E-66 | -1.69E-46 |
| MS.gene055634 | MS.gene80804 | 0.812522 | 4.06E-51 | -1.69E-46 |
| MS.gene055638 | MS.gene80804 | 0.827337 | 1.65E-54 | -1.69E-46 |
| MS.gene055748 | MS.gene80804 | 0.881694 | 1.94E-70 | -1.69E-46 |
| MS.gene055750 | MS.gene80804 | 0.860906 | 1.49E-63 | -1.69E-46 |
| MS.gene055751 | MS.gene80804 | 0.896303 | 4.20E-76 | -1.69E-46 |
| MS.gene055776 | MS.gene80804 | 0.866124 | 3.59E-65 | -1.69E-46 |
| MS.gene05589 | MS.gene80804 | 0.833838 | 4.24E-56 | -1.69E-46 |
| MS.gene055941 | MS.gene80804 | 0.837232 | 5.87E-57 | -1.69E-46 |
| MS.gene055942 | MS.gene80804 | -0.829715 | 4.41E-55 | -1.69E-46 |
| MS.gene055956 | MS.gene80804 | -0.810024 | 1.42E-50 | -1.69E-46 |
| MS.gene056374 | MS.gene80804 | 0.816134 | 6.47E-52 | -1.69E-46 |
| MS.gene056405 | MS.gene80804 | 0.811226 | 7.78E-51 | -1.69E-46 |
| MS.gene056449 | MS.gene80804 | 0.809733 | 1.64E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene80804 | 0.860959 | 1.44E-63 | -1.69E-46 |
| MS.gene056510 | MS.gene80804 | 0.85971 | 3.43E-63 | -1.69E-46 |
| MS.gene056607 | MS.gene80804 | 0.81752 | 3.16E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene80804 | 0.886502 | 3.23E-72 | -1.69E-46 |
| MS.gene056692 | MS.gene80804 | 0.864307 | 1.34E-64 | -1.69E-46 |
| MS.gene056856 | MS.gene80804 | -0.817783 | 2.76E-52 | -1.69E-46 |
| MS.gene056898 | MS.gene80804 | 0.819223 | 1.30E-52 | -1.69E-46 |
| MS.gene057246 | MS.gene80804 | 0.804786 | 1.83E-49 | -1.69E-46 |
| MS.gene057658 | MS.gene80804 | 0.809597 | 1.75E-50 | -1.69E-46 |
| MS.gene057831 | MS.gene80804 | 0.819101 | 1.39E-52 | -1.69E-46 |
| MS.gene057857 | MS.gene80804 | 0.807057 | 6.09E-50 | -1.69E-46 |
| MS.gene057926 | MS.gene80804 | 0.801423 | 9.07E-49 | -1.69E-46 |
| MS.gene057986 | MS.gene80804 | 0.801776 | 7.68E-49 | -1.69E-46 |
| MS.gene058334 | MS.gene80804 | -0.825833 | 3.78E-54 | -1.69E-46 |
| MS.gene058338 | MS.gene80804 | 0.801692 | 7.99E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene80804 | 0.810164 | 1.32E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene80804 | 0.880333 | 5.99E-70 | -1.69E-46 |
| MS.gene058544 | MS.gene80804 | 0.822963 | 1.79E-53 | -1.69E-46 |
| MS.gene058723 | MS.gene80804 | 0.860285 | 2.30E-63 | -1.69E-46 |
| MS.gene058773 | MS.gene80804 | 0.888849 | 4.10E-73 | -1.69E-46 |
| MS.gene058838 | MS.gene80804 | 0.84771 | 9.73E-60 | -1.69E-46 |
| MS.gene059022 | MS.gene80804 | 0.895411 | 9.84E-76 | -1.69E-46 |
| MS.gene059023 | MS.gene80804 | 0.864454 | 1.20E-64 | -1.69E-46 |
| MS.gene059029 | MS.gene80804 | 0.827114 | 1.87E-54 | -1.69E-46 |
| MS.gene059079 | MS.gene80804 | 0.828742 | 7.59E-55 | -1.69E-46 |
| MS.gene05913 | MS.gene80804 | 0.814159 | 1.78E-51 | -1.69E-46 |
| MS.gene05914 | MS.gene80804 | 0.800965 | 1.13E-48 | -1.69E-46 |
| MS.gene059677 | MS.gene80804 | 0.909973 | 3.15E-82 | -1.69E-46 |
| MS.gene059718 | MS.gene80804 | 0.864224 | 1.42E-64 | -1.69E-46 |
| MS.gene059756 | MS.gene80804 | 0.836458 | 9.25E-57 | -1.69E-46 |
| MS.gene059865 | MS.gene80804 | 0.854649 | 1.07E-61 | -1.69E-46 |
| MS.gene059902 | MS.gene80804 | 0.804314 | 2.29E-49 | -1.69E-46 |
| MS.gene060337 | MS.gene80804 | -0.808302 | 3.31E-50 | -1.69E-46 |
| MS.gene060703 | MS.gene80804 | 0.855495 | 6.07E-62 | -1.69E-46 |
| MS.gene060762 | MS.gene80804 | 0.871252 | 7.88E-67 | -1.69E-46 |
| MS.gene060778 | MS.gene80804 | 0.812236 | 4.69E-51 | -1.69E-46 |
| MS.gene06077 | MS.gene80804 | 0.85284 | 3.54E-61 | -1.69E-46 |
| MS.gene06092 | MS.gene80804 | 0.805071 | 1.59E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene80804 | 0.853863 | 1.80E-61 | -1.69E-46 |
| MS.gene061150 | MS.gene80804 | 0.870605 | 1.29E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80804.t1 | MTR_5g082260 | 98.000 | 450 | 9 | 0 | 3 | 452 | 65 | 514 | 0.0 | 878 |
| MS.gene80804.t1 | MTR_7g086430 | 30.310 | 419 | 252 | 7 | 53 | 439 | 115 | 525 | 5.44e-46 | 167 |
| MS.gene80804.t1 | MTR_7g086430 | 29.801 | 302 | 172 | 7 | 53 | 322 | 115 | 408 | 3.23e-29 | 119 |
| MS.gene80804.t1 | MTR_4g010130 | 26.216 | 473 | 302 | 14 | 2 | 439 | 85 | 545 | 2.12e-28 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80804.t1 | AT5G05740 | 69.845 | 451 | 120 | 2 | 4 | 444 | 70 | 514 | 0.0 | 629 |
| MS.gene80804.t1 | AT5G05740 | 69.845 | 451 | 120 | 2 | 4 | 444 | 73 | 517 | 0.0 | 629 |
| MS.gene80804.t1 | AT5G05740 | 65.625 | 480 | 120 | 3 | 4 | 444 | 73 | 546 | 0.0 | 615 |
| MS.gene80804.t1 | AT5G35220 | 28.358 | 469 | 296 | 9 | 5 | 439 | 69 | 531 | 2.33e-49 | 177 |
| MS.gene80804.t1 | AT1G17870 | 26.841 | 421 | 265 | 11 | 54 | 439 | 140 | 552 | 2.07e-22 | 100 |
| MS.gene80804.t1 | AT5G35210 | 38.462 | 117 | 69 | 1 | 248 | 361 | 1545 | 1661 | 1.19e-15 | 80.5 |
Find 112 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCTTGTTCTTCTGCTTCT+AGG | 0.158404 | 5.3:+66572462 | MS.gene80804:CDS |
| CAATAAATCGGATTGCAAAT+TGG | 0.179236 | 5.3:-66571427 | None:intergenic |
| CAAGCTTAACTCCAAGGTTT+TGG | 0.213368 | 5.3:-66571927 | None:intergenic |
| TGACAATCTGAATTTGTTAA+AGG | 0.219792 | 5.3:+66571834 | MS.gene80804:CDS |
| GTTTAAGCAAAACTGTTTCT+TGG | 0.252003 | 5.3:+66572732 | MS.gene80804:intron |
| TCATCTGATAGAGGTGAAAT+TGG | 0.254028 | 5.3:-66574762 | None:intergenic |
| ACAAGAGGGTTGATAGAAAT+TGG | 0.263113 | 5.3:-66572777 | None:intergenic |
| CTATCAACCCTCTTGTCATC+TGG | 0.272101 | 5.3:+66572784 | MS.gene80804:CDS |
| CATTTGTTATAGGATAAATT+TGG | 0.280363 | 5.3:+66571132 | MS.gene80804:intron |
| AATAAATCGGATTGCAAATT+GGG | 0.290251 | 5.3:-66571426 | None:intergenic |
| ACCCTCTTGTCATCTGGGCT+TGG | 0.316440 | 5.3:+66572790 | MS.gene80804:CDS |
| CTTGTTACTGCACTTATTAT+CGG | 0.320323 | 5.3:+66571874 | MS.gene80804:CDS |
| AAATGGAGAAACACAATCTT+TGG | 0.324342 | 5.3:+66568230 | MS.gene80804:CDS |
| CCCTCTTGTCATCTGGGCTT+GGG | 0.332709 | 5.3:+66572791 | MS.gene80804:CDS |
| TGGTGGCAGATAGGCTCTTT+TGG | 0.338317 | 5.3:+66572351 | MS.gene80804:intron |
| TGGTTTGGTGCTGCGTCTTT+TGG | 0.348500 | 5.3:+66571366 | MS.gene80804:CDS |
| CATCCTCGGGATTGACTAGA+AGG | 0.355654 | 5.3:-66571173 | None:intergenic |
| TCTGGTTGTAAAGTAGTTCT+TGG | 0.370039 | 5.3:-66571219 | None:intergenic |
| GCAGCTGCTGGACCAATTGC+CGG | 0.374813 | 5.3:+66572429 | MS.gene80804:CDS |
| TTGTTAAAGGATGGCCTACC+TGG | 0.381827 | 5.3:+66571847 | MS.gene80804:CDS |
| TTGTTACTGCACTTATTATC+GGG | 0.385893 | 5.3:+66571875 | MS.gene80804:CDS |
| TCCCCAACAGCCTCAACAAC+TGG | 0.386318 | 5.3:+66570767 | MS.gene80804:intron |
| GCAAGGGTTTCGTCTATAAA+CGG | 0.388284 | 5.3:-66574870 | None:intergenic |
| CCAATTGCCGGATTTGCATT+GGG | 0.393078 | 5.3:+66572441 | MS.gene80804:CDS |
| TATCAACCCTCTTGTCATCT+GGG | 0.397366 | 5.3:+66572785 | MS.gene80804:CDS |
| ATAAATTTGGAGATGAATAC+AGG | 0.402996 | 5.3:+66571145 | MS.gene80804:CDS |
| CTTGTCATCTGGGCTTGGGC+AGG | 0.406606 | 5.3:+66572795 | MS.gene80804:CDS |
| TTGCTCAAGATTGCAGCTGC+TGG | 0.406860 | 5.3:+66572417 | MS.gene80804:CDS |
| TGATACCTTTCTTCCCCATA+TGG | 0.407032 | 5.3:-66572883 | None:intergenic |
| TCCAGCAGGAATACTGTTGA+TGG | 0.409965 | 5.3:-66572832 | None:intergenic |
| TTTAGCTGTTCTGCATCTAC+AGG | 0.415775 | 5.3:-66568282 | None:intergenic |
| AACAAGACCCAATGCAAATC+CGG | 0.416938 | 5.3:-66572448 | None:intergenic |
| ACCAATTGCCGGATTTGCAT+TGG | 0.418392 | 5.3:+66572440 | MS.gene80804:CDS |
| TTAATGATGTAGCTTTCTAC+TGG | 0.420976 | 5.3:+66574709 | MS.gene80804:CDS |
| CACACACCTCGTAAGGATCT+TGG | 0.435624 | 5.3:-66570872 | None:intergenic |
| CAGGCTTCAATTCGCTTCAC+AGG | 0.436252 | 5.3:+66574651 | MS.gene80804:intron |
| CCCAATGCAAATCCGGCAAT+TGG | 0.439644 | 5.3:-66572441 | None:intergenic |
| CAAGGGTTTCGTCTATAAAC+GGG | 0.439726 | 5.3:-66574869 | None:intergenic |
| TCCCGTACTTTGTTCCTAGC+TGG | 0.456423 | 5.3:+66571953 | MS.gene80804:CDS |
| ATTCCTGCTGGAGAAATTGA+TGG | 0.463251 | 5.3:+66572843 | MS.gene80804:CDS |
| GTACTTTGTTCCTAGCTGGC+AGG | 0.463565 | 5.3:+66571957 | MS.gene80804:CDS |
| CTTGGAACGACAACGGCCAC+TGG | 0.467933 | 5.3:-66571201 | None:intergenic |
| TACAAATCAAAATGATGTGC+AGG | 0.470961 | 5.3:+66568323 | MS.gene80804:CDS |
| TGTTCTGCATCTACAGGTGG+AGG | 0.473670 | 5.3:-66568276 | None:intergenic |
| CAAAACCTTGGAGTTAAGCT+TGG | 0.474152 | 5.3:+66571928 | MS.gene80804:CDS |
| ATAAAAGTGATGAGAGAGAA+AGG | 0.474171 | 5.3:+66567899 | None:intergenic |
| TCATTTCTAGCCGGCGGCAT+TGG | 0.474891 | 5.3:+66572546 | MS.gene80804:CDS |
| TTAGCTGTACCTGAGTGGTT+TGG | 0.476022 | 5.3:+66571351 | MS.gene80804:intron |
| CTAGGGTGGAGTGCTATTCA+AGG | 0.477217 | 5.3:+66570968 | MS.gene80804:intron |
| TTTCTAGTTGCCCAAAACCT+TGG | 0.479583 | 5.3:+66571916 | MS.gene80804:CDS |
| AAGTAAGTACGAGTTGTCTC+TGG | 0.481786 | 5.3:-66571237 | None:intergenic |
| TACTGTTGATGGCATTGATA+AGG | 0.481843 | 5.3:-66572821 | None:intergenic |
| GCCACTGGCTTATCATCCTC+GGG | 0.481990 | 5.3:-66571186 | None:intergenic |
| TCTATAAACGGGAAAGGGTA+TGG | 0.482905 | 5.3:-66574858 | None:intergenic |
| TCAGTTATTTCATCTGATAG+AGG | 0.484865 | 5.3:-66574771 | None:intergenic |
| ATTATCGGGGTACACGAACT+TGG | 0.489213 | 5.3:+66571889 | MS.gene80804:CDS |
| TGCCAGCTAGGAACAAAGTA+CGG | 0.492497 | 5.3:-66571955 | None:intergenic |
| GCCAGTGGATCACCTCTGCC+AGG | 0.499435 | 5.3:+66570626 | MS.gene80804:CDS |
| GGCCACTGGCTTATCATCCT+CGG | 0.500169 | 5.3:-66571187 | None:intergenic |
| CTTATATTCTTCTTGCAAAG+AGG | 0.500793 | 5.3:+66574738 | MS.gene80804:CDS |
| GATGACAAGTATGTTGCTCT+TGG | 0.507660 | 5.3:+66574798 | MS.gene80804:CDS |
| GCCATCAACAGTATTCCTGC+TGG | 0.507781 | 5.3:+66572831 | MS.gene80804:CDS |
| AGAGCAACATACTTGTCATC+AGG | 0.510930 | 5.3:-66574795 | None:intergenic |
| CGATAATAAGTGCAGTAACA+AGG | 0.511270 | 5.3:-66571873 | None:intergenic |
| CCTCCATCAATTTCTCCAGC+AGG | 0.514006 | 5.3:-66572846 | None:intergenic |
| ATCACATCATCCAGTTGTTG+AGG | 0.517863 | 5.3:-66570777 | None:intergenic |
| CTTGGTAACGTTCTCAAGGA+AGG | 0.529950 | 5.3:+66572750 | MS.gene80804:CDS |
| AATCTGAATTTGTTAAAGGA+TGG | 0.531461 | 5.3:+66571838 | MS.gene80804:CDS |
| TATCATACAACCTGCCAGCT+AGG | 0.533569 | 5.3:-66571967 | None:intergenic |
| ATACCTCCAAGTGACGGTAT+TGG | 0.534054 | 5.3:+66572492 | MS.gene80804:CDS |
| AGTGCAGTAACAAGGGCTCC+AGG | 0.541596 | 5.3:-66571865 | None:intergenic |
| GGGGACATTGCGAAGCAGTA+AGG | 0.546571 | 5.3:-66571406 | None:intergenic |
| TTTCGTCTATAAACGGGAAA+GGG | 0.553637 | 5.3:-66574863 | None:intergenic |
| ATATAGGCACACACCTCGTA+AGG | 0.553649 | 5.3:-66570879 | None:intergenic |
| GTTTCTTGGTAACGTTCTCA+AGG | 0.553899 | 5.3:+66572746 | MS.gene80804:CDS |
| AGCTGTTCTGCATCTACAGG+TGG | 0.557660 | 5.3:-66568279 | None:intergenic |
| TGGAGAAACACAATCTTTGG+AGG | 0.560871 | 5.3:+66568233 | MS.gene80804:CDS |
| ATCACCTCTGCCAGGTGTGA+AGG | 0.562627 | 5.3:+66570634 | MS.gene80804:CDS |
| ACCTGGCAGAGGTGATCCAC+TGG | 0.563174 | 5.3:-66570627 | None:intergenic |
| GTTTCGTCTATAAACGGGAA+AGG | 0.563853 | 5.3:-66574864 | None:intergenic |
| GCCAGCTAGGAACAAAGTAC+GGG | 0.582312 | 5.3:-66571954 | None:intergenic |
| ACACCAATACCGTCACTTGG+AGG | 0.583153 | 5.3:-66572495 | None:intergenic |
| AATATAATCACCTTCACACC+TGG | 0.583486 | 5.3:-66570644 | None:intergenic |
| CACGAGTCATTTCTAGCCGG+CGG | 0.588757 | 5.3:+66572540 | MS.gene80804:CDS |
| TGTTACTGCACTTATTATCG+GGG | 0.591294 | 5.3:+66571876 | MS.gene80804:CDS |
| ATCACCTTCACACCTGGCAG+AGG | 0.594663 | 5.3:-66570638 | None:intergenic |
| ACAACACCAATACCGTCACT+TGG | 0.597252 | 5.3:-66572498 | None:intergenic |
| GATAATAAGTGCAGTAACAA+GGG | 0.601874 | 5.3:-66571872 | None:intergenic |
| ACTGTTTCTAGAAACTTGCA+AGG | 0.605257 | 5.3:-66574887 | None:intergenic |
| GGACTCCAAGCTTAACTCCA+AGG | 0.609370 | 5.3:-66571933 | None:intergenic |
| ATATAGCTTACCAATGCCGC+CGG | 0.611628 | 5.3:-66572556 | None:intergenic |
| GCCCAAGCCCAGATGACAAG+AGG | 0.612324 | 5.3:-66572792 | None:intergenic |
| CTGCTGGAGAAATTGATGGA+GGG | 0.614638 | 5.3:+66572847 | MS.gene80804:CDS |
| TTTCACGAGTCATTTCTAGC+CGG | 0.617627 | 5.3:+66572537 | MS.gene80804:CDS |
| CTGTTTCTAGAAACTTGCAA+GGG | 0.625123 | 5.3:-66574886 | None:intergenic |
| TAATGATGTAGCTTTCTACT+GGG | 0.625802 | 5.3:+66574710 | MS.gene80804:CDS |
| CAGTAACAAGGGCTCCAGGT+AGG | 0.628013 | 5.3:-66571861 | None:intergenic |
| CCTGCTGGAGAAATTGATGG+AGG | 0.633583 | 5.3:+66572846 | MS.gene80804:CDS |
| CCCAAGCCCAGATGACAAGA+GGG | 0.633593 | 5.3:-66572791 | None:intergenic |
| TAGGGTGGAGTGCTATTCAA+GGG | 0.635501 | 5.3:+66570969 | MS.gene80804:intron |
| TTTGTTATACCTCCAAGTGA+CGG | 0.635773 | 5.3:+66572486 | MS.gene80804:CDS |
| GACGCAGCACCAAACCACTC+AGG | 0.637018 | 5.3:-66571360 | None:intergenic |
| GTTCTGCATCTACAGGTGGA+GGG | 0.651010 | 5.3:-66568275 | None:intergenic |
| TGGAGGGTTACTTTGCTCAG+AGG | 0.654797 | 5.3:-66568259 | None:intergenic |
| ATAAATCGGATTGCAAATTG+GGG | 0.665060 | 5.3:-66571425 | None:intergenic |
| CTATTCAAGGGAAACCTGCG+AGG | 0.669260 | 5.3:+66570981 | MS.gene80804:CDS |
| TCCCGAGGATGATAAGCCAG+TGG | 0.675188 | 5.3:+66571185 | MS.gene80804:CDS |
| AGTAGTTCTTGGAACGACAA+CGG | 0.680756 | 5.3:-66571208 | None:intergenic |
| TTTCCTTCTAGTCAATCCCG+AGG | 0.685043 | 5.3:+66571170 | MS.gene80804:CDS |
| GATAACATAGAAGTTGCCAG+TGG | 0.714256 | 5.3:+66570611 | MS.gene80804:CDS |
| TATTCAAGGGAAACCTGCGA+GGG | 0.734245 | 5.3:+66570982 | MS.gene80804:CDS |
| AACAAGCCAAGATCCTTACG+AGG | 0.757784 | 5.3:+66570866 | MS.gene80804:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 66567908 | 66574902 | 66567908 | ID=MS.gene80804 |
| chr5.3 | mRNA | 66567908 | 66574902 | 66567908 | ID=MS.gene80804.t1;Parent=MS.gene80804 |
| chr5.3 | exon | 66567908 | 66567925 | 66567908 | ID=MS.gene80804.t1.exon1;Parent=MS.gene80804.t1 |
| chr5.3 | CDS | 66567908 | 66567925 | 66567908 | ID=cds.MS.gene80804.t1;Parent=MS.gene80804.t1 |
| chr5.3 | exon | 66568213 | 66568344 | 66568213 | ID=MS.gene80804.t1.exon2;Parent=MS.gene80804.t1 |
| chr5.3 | CDS | 66568213 | 66568344 | 66568213 | ID=cds.MS.gene80804.t1;Parent=MS.gene80804.t1 |
| chr5.3 | exon | 66570605 | 66570655 | 66570605 | ID=MS.gene80804.t1.exon3;Parent=MS.gene80804.t1 |
| chr5.3 | CDS | 66570605 | 66570655 | 66570605 | ID=cds.MS.gene80804.t1;Parent=MS.gene80804.t1 |
| chr5.3 | exon | 66570777 | 66570887 | 66570777 | ID=MS.gene80804.t1.exon4;Parent=MS.gene80804.t1 |
| chr5.3 | CDS | 66570777 | 66570887 | 66570777 | ID=cds.MS.gene80804.t1;Parent=MS.gene80804.t1 |
| chr5.3 | exon | 66570972 | 66571046 | 66570972 | ID=MS.gene80804.t1.exon5;Parent=MS.gene80804.t1 |
| chr5.3 | CDS | 66570972 | 66571046 | 66570972 | ID=cds.MS.gene80804.t1;Parent=MS.gene80804.t1 |
| chr5.3 | exon | 66571144 | 66571249 | 66571144 | ID=MS.gene80804.t1.exon6;Parent=MS.gene80804.t1 |
| chr5.3 | CDS | 66571144 | 66571249 | 66571144 | ID=cds.MS.gene80804.t1;Parent=MS.gene80804.t1 |
| chr5.3 | exon | 66571355 | 66571448 | 66571355 | ID=MS.gene80804.t1.exon7;Parent=MS.gene80804.t1 |
| chr5.3 | CDS | 66571355 | 66571448 | 66571355 | ID=cds.MS.gene80804.t1;Parent=MS.gene80804.t1 |
| chr5.3 | exon | 66571825 | 66571978 | 66571825 | ID=MS.gene80804.t1.exon8;Parent=MS.gene80804.t1 |
| chr5.3 | CDS | 66571825 | 66571978 | 66571825 | ID=cds.MS.gene80804.t1;Parent=MS.gene80804.t1 |
| chr5.3 | exon | 66572360 | 66572567 | 66572360 | ID=MS.gene80804.t1.exon9;Parent=MS.gene80804.t1 |
| chr5.3 | CDS | 66572360 | 66572567 | 66572360 | ID=cds.MS.gene80804.t1;Parent=MS.gene80804.t1 |
| chr5.3 | exon | 66572739 | 66572899 | 66572739 | ID=MS.gene80804.t1.exon10;Parent=MS.gene80804.t1 |
| chr5.3 | CDS | 66572739 | 66572899 | 66572739 | ID=cds.MS.gene80804.t1;Parent=MS.gene80804.t1 |
| chr5.3 | exon | 66574654 | 66574902 | 66574654 | ID=MS.gene80804.t1.exon11;Parent=MS.gene80804.t1 |
| chr5.3 | CDS | 66574654 | 66574902 | 66574654 | ID=cds.MS.gene80804.t1;Parent=MS.gene80804.t1 |
| Gene Sequence |
| Protein sequence |
