Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057606.t1 | ACZ37071.1 | 100 | 127 | 0 | 0 | 1 | 127 | 1 | 127 | 3.90E-62 | 247.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057606.t1 | Q38879 | 52.3 | 111 | 53 | 0 | 16 | 126 | 22 | 132 | 3.9e-31 | 135.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057606.t1 | D8L5E2 | 100.0 | 127 | 0 | 0 | 1 | 127 | 1 | 127 | 2.8e-62 | 247.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene057606 | MS.gene061777 | 0.807347 | 5.28E-50 | -1.69E-46 |
MS.gene057606 | MS.gene064647 | 0.812231 | 4.70E-51 | -1.69E-46 |
MS.gene057606 | MS.gene066309 | 0.831406 | 1.70E-55 | -1.69E-46 |
MS.gene057606 | MS.gene20602 | -0.807876 | 4.08E-50 | -1.69E-46 |
MS.gene057606 | MS.gene26474 | 0.809602 | 1.74E-50 | -1.69E-46 |
MS.gene057606 | MS.gene27680 | 0.802942 | 4.42E-49 | -1.69E-46 |
MS.gene057606 | MS.gene27681 | 0.801424 | 9.06E-49 | -1.69E-46 |
MS.gene057606 | MS.gene28077 | 0.807453 | 5.02E-50 | -1.69E-46 |
MS.gene057606 | MS.gene44249 | 0.815171 | 1.06E-51 | -1.69E-46 |
MS.gene057606 | MS.gene47882 | 0.826362 | 2.83E-54 | -1.69E-46 |
MS.gene057606 | MS.gene47883 | 0.80308 | 4.13E-49 | -1.69E-46 |
MS.gene057606 | MS.gene49607 | 0.997638 | 3.08E-246 | -1.69E-46 |
MS.gene057606 | MS.gene50620 | 0.80497 | 1.67E-49 | -1.69E-46 |
MS.gene057606 | MS.gene51018 | 0.800634 | 1.31E-48 | -1.69E-46 |
MS.gene057606 | MS.gene54709 | -0.813943 | 1.98E-51 | -1.69E-46 |
MS.gene057606 | MS.gene57132 | -0.802594 | 5.21E-49 | -1.69E-46 |
MS.gene057606 | MS.gene57291 | 0.805011 | 1.64E-49 | -1.69E-46 |
MS.gene057606 | MS.gene58516 | 0.970297 | 2.10E-131 | -1.69E-46 |
MS.gene057606 | MS.gene87342 | 0.800363 | 1.49E-48 | -1.69E-46 |
MS.gene057606 | MS.gene89654 | 0.803383 | 3.58E-49 | -1.69E-46 |
MS.gene057606 | MS.gene95132 | 0.800107 | 1.68E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057606.t1 | MTR_5g037950 | 99.213 | 127 | 1 | 0 | 1 | 127 | 1 | 127 | 9.54e-91 | 258 |
MS.gene057606.t1 | MTR_5g037930 | 72.441 | 127 | 34 | 1 | 1 | 126 | 1 | 127 | 1.45e-54 | 167 |
MS.gene057606.t1 | MTR_5g037890 | 66.667 | 126 | 41 | 1 | 1 | 126 | 1 | 125 | 6.50e-53 | 162 |
MS.gene057606.t1 | MTR_7g009070 | 60.577 | 104 | 41 | 0 | 23 | 126 | 30 | 133 | 7.25e-45 | 142 |
MS.gene057606.t1 | MTR_3g112410 | 49.550 | 111 | 56 | 0 | 15 | 125 | 2 | 112 | 4.79e-38 | 125 |
MS.gene057606.t1 | MTR_1g023140 | 43.750 | 112 | 63 | 0 | 15 | 126 | 2 | 113 | 1.37e-34 | 116 |
MS.gene057606.t1 | MTR_5g021180 | 44.144 | 111 | 62 | 0 | 15 | 125 | 4 | 114 | 6.89e-34 | 114 |
MS.gene057606.t1 | MTR_8g107460 | 43.137 | 102 | 58 | 0 | 21 | 122 | 256 | 357 | 2.50e-27 | 103 |
MS.gene057606.t1 | MTR_4g081380 | 44.340 | 106 | 57 | 2 | 19 | 123 | 10 | 114 | 7.97e-26 | 94.4 |
MS.gene057606.t1 | MTR_2g010750 | 40.952 | 105 | 62 | 0 | 19 | 123 | 9 | 113 | 2.39e-25 | 93.2 |
MS.gene057606.t1 | MTR_2g082590 | 39.604 | 101 | 59 | 1 | 23 | 123 | 29 | 127 | 2.24e-23 | 88.6 |
MS.gene057606.t1 | MTR_2g082590 | 35.238 | 105 | 68 | 0 | 19 | 123 | 10 | 114 | 3.36e-23 | 87.4 |
MS.gene057606.t1 | MTR_8g005320 | 38.710 | 93 | 57 | 0 | 30 | 122 | 37 | 129 | 4.66e-23 | 87.8 |
MS.gene057606.t1 | MTR_7g073680 | 39.560 | 91 | 55 | 0 | 30 | 120 | 35 | 125 | 4.82e-23 | 87.8 |
MS.gene057606.t1 | MTR_8g006685 | 38.710 | 93 | 57 | 0 | 30 | 122 | 106 | 198 | 1.95e-22 | 87.8 |
MS.gene057606.t1 | MTR_8g006560 | 38.710 | 93 | 57 | 0 | 30 | 122 | 106 | 198 | 1.95e-22 | 87.8 |
MS.gene057606.t1 | MTR_1g098660 | 38.372 | 86 | 50 | 2 | 40 | 124 | 77 | 160 | 2.58e-19 | 79.0 |
MS.gene057606.t1 | MTR_4g094690 | 39.024 | 82 | 48 | 1 | 45 | 124 | 85 | 166 | 9.95e-19 | 77.4 |
MS.gene057606.t1 | MTR_7g080250 | 41.379 | 87 | 50 | 1 | 41 | 126 | 94 | 180 | 5.42e-16 | 70.5 |
MS.gene057606.t1 | MTR_3g089065 | 37.349 | 83 | 50 | 2 | 44 | 124 | 89 | 171 | 4.50e-15 | 68.2 |
MS.gene057606.t1 | MTR_2g079420 | 38.554 | 83 | 49 | 2 | 44 | 124 | 89 | 171 | 4.01e-14 | 65.5 |
MS.gene057606.t1 | MTR_8g059015 | 36.145 | 83 | 51 | 2 | 44 | 124 | 92 | 174 | 2.04e-13 | 63.5 |
MS.gene057606.t1 | MTR_1g114290 | 34.615 | 78 | 47 | 2 | 40 | 116 | 85 | 159 | 7.07e-13 | 62.4 |
MS.gene057606.t1 | MTR_4g088905 | 32.500 | 80 | 54 | 0 | 45 | 124 | 25 | 104 | 1.22e-11 | 60.8 |
MS.gene057606.t1 | MTR_4g081380 | 36.905 | 84 | 51 | 2 | 13 | 95 | 4 | 86 | 1.38e-11 | 57.0 |
MS.gene057606.t1 | MTR_4g085880 | 31.579 | 76 | 51 | 1 | 44 | 118 | 84 | 159 | 6.77e-11 | 57.0 |
MS.gene057606.t1 | MTR_2g079340 | 36.620 | 71 | 44 | 1 | 43 | 112 | 54 | 124 | 8.72e-11 | 56.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057606.t1 | AT5G39950 | 52.252 | 111 | 53 | 0 | 16 | 126 | 22 | 132 | 1.79e-44 | 142 |
MS.gene057606.t1 | AT1G59730 | 43.077 | 130 | 70 | 2 | 1 | 127 | 1 | 129 | 1.16e-37 | 124 |
MS.gene057606.t1 | AT3G51030 | 44.144 | 111 | 62 | 0 | 15 | 125 | 2 | 112 | 6.05e-34 | 114 |
MS.gene057606.t1 | AT5G42980 | 48.113 | 106 | 55 | 0 | 21 | 126 | 7 | 112 | 3.14e-33 | 112 |
MS.gene057606.t1 | AT1G69880 | 48.077 | 104 | 54 | 0 | 21 | 124 | 39 | 142 | 2.72e-32 | 111 |
MS.gene057606.t1 | AT1G19730 | 45.536 | 112 | 60 | 1 | 15 | 125 | 2 | 113 | 4.15e-31 | 107 |
MS.gene057606.t1 | AT1G45145 | 41.905 | 105 | 61 | 0 | 21 | 125 | 7 | 111 | 2.03e-30 | 105 |
MS.gene057606.t1 | AT3G17880 | 39.474 | 114 | 65 | 1 | 13 | 122 | 253 | 366 | 1.54e-25 | 99.0 |
MS.gene057606.t1 | AT3G17880 | 39.474 | 114 | 65 | 1 | 13 | 122 | 260 | 373 | 1.61e-25 | 99.4 |
MS.gene057606.t1 | AT1G11530 | 39.806 | 103 | 62 | 0 | 21 | 123 | 4 | 106 | 7.44e-24 | 89.4 |
MS.gene057606.t1 | AT3G08710 | 41.758 | 91 | 53 | 0 | 30 | 120 | 34 | 124 | 2.45e-23 | 88.6 |
MS.gene057606.t1 | AT3G08710 | 41.758 | 91 | 53 | 0 | 30 | 120 | 34 | 124 | 2.45e-23 | 88.6 |
MS.gene057606.t1 | AT3G08710 | 41.758 | 91 | 53 | 0 | 30 | 120 | 34 | 124 | 2.45e-23 | 88.6 |
MS.gene057606.t1 | AT3G56420 | 38.043 | 92 | 57 | 0 | 29 | 120 | 50 | 141 | 4.44e-23 | 88.2 |
MS.gene057606.t1 | AT3G56420 | 38.043 | 92 | 57 | 0 | 29 | 120 | 50 | 141 | 4.44e-23 | 88.2 |
MS.gene057606.t1 | AT3G56420 | 38.043 | 92 | 57 | 0 | 29 | 120 | 50 | 141 | 4.44e-23 | 88.2 |
MS.gene057606.t1 | AT2G40790 | 39.130 | 92 | 56 | 0 | 29 | 120 | 50 | 141 | 1.72e-19 | 79.0 |
MS.gene057606.t1 | AT2G40790 | 39.130 | 92 | 56 | 0 | 29 | 120 | 50 | 141 | 1.72e-19 | 79.0 |
MS.gene057606.t1 | AT1G43560 | 41.379 | 87 | 49 | 2 | 40 | 124 | 75 | 161 | 4.76e-19 | 78.2 |
MS.gene057606.t1 | AT1G76760 | 38.372 | 86 | 51 | 2 | 40 | 123 | 80 | 165 | 2.28e-18 | 76.6 |
MS.gene057606.t1 | AT5G16400 | 42.529 | 87 | 49 | 1 | 41 | 126 | 97 | 183 | 1.71e-17 | 74.7 |
MS.gene057606.t1 | AT2G35010 | 40.244 | 82 | 47 | 1 | 45 | 124 | 110 | 191 | 6.68e-17 | 73.2 |
MS.gene057606.t1 | AT2G35010 | 40.244 | 82 | 47 | 1 | 45 | 124 | 110 | 191 | 6.68e-17 | 73.2 |
MS.gene057606.t1 | AT3G02730 | 43.023 | 86 | 48 | 1 | 42 | 126 | 88 | 173 | 8.91e-17 | 72.4 |
MS.gene057606.t1 | AT3G15360 | 32.673 | 101 | 63 | 3 | 26 | 124 | 92 | 189 | 6.05e-15 | 68.2 |
MS.gene057606.t1 | AT1G31020 | 39.024 | 82 | 48 | 1 | 45 | 124 | 75 | 156 | 7.98e-15 | 67.0 |
MS.gene057606.t1 | AT1G03680 | 38.272 | 81 | 48 | 2 | 46 | 124 | 97 | 177 | 1.43e-14 | 67.0 |
MS.gene057606.t1 | AT4G03520 | 33.735 | 83 | 53 | 2 | 44 | 124 | 101 | 183 | 1.13e-13 | 64.7 |
MS.gene057606.t1 | AT1G52990 | 34.066 | 91 | 58 | 2 | 35 | 124 | 222 | 311 | 1.73e-13 | 65.9 |
MS.gene057606.t1 | AT1G50320 | 39.189 | 74 | 41 | 2 | 44 | 116 | 90 | 160 | 3.80e-13 | 63.2 |
MS.gene057606.t1 | AT4G04950 | 29.787 | 94 | 66 | 0 | 31 | 124 | 11 | 104 | 9.42e-12 | 61.2 |
MS.gene057606.t1 | AT4G32580 | 30.864 | 81 | 56 | 0 | 44 | 124 | 24 | 104 | 9.86e-12 | 58.9 |
MS.gene057606.t1 | AT1G07700 | 36.364 | 99 | 55 | 2 | 34 | 124 | 100 | 198 | 1.72e-11 | 59.3 |
MS.gene057606.t1 | AT1G07700 | 36.364 | 99 | 55 | 2 | 34 | 124 | 100 | 198 | 1.72e-11 | 59.3 |
MS.gene057606.t1 | AT1G07700 | 36.364 | 99 | 55 | 2 | 34 | 124 | 100 | 198 | 1.72e-11 | 59.3 |
MS.gene057606.t1 | AT1G07700 | 36.364 | 99 | 55 | 2 | 34 | 124 | 113 | 211 | 3.61e-11 | 58.5 |
Find 25 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAGCTAATTCTTTGATAAT+TGG | 0.122091 | 5.4:+27240188 | None:intergenic |
GGAGGTGGCAAGTGCATTTC+AGG | 0.225705 | 5.4:-27240019 | MS.gene057606:CDS |
CTCAACAACAGACTCTAAAT+TGG | 0.230357 | 5.4:+27240895 | None:intergenic |
GATTGACGTGGATGAGTTAA+TGG | 0.268688 | 5.4:-27240138 | MS.gene057606:intron |
CCTTCCACTCAACTGCTAAA+TGG | 0.287365 | 5.4:-27240844 | MS.gene057606:CDS |
CAGCTAATTCTTTGATAATT+GGG | 0.312442 | 5.4:+27240189 | None:intergenic |
TACCAGCTTGTTTGTTACTT+TGG | 0.383274 | 5.4:+27240802 | None:intergenic |
AGACTCTAAATTGGAAAAGT+TGG | 0.412160 | 5.4:+27240904 | None:intergenic |
AAAGATGGTCATTGATTTCA+CGG | 0.422756 | 5.4:-27240243 | MS.gene057606:intron |
TAAATGGAAGGCTCACTTTG+AGG | 0.488391 | 5.4:-27240828 | MS.gene057606:CDS |
TCATTGATTTCACGGCTACT+TGG | 0.488401 | 5.4:-27240235 | MS.gene057606:CDS |
CCATTTAGCAGTTGAGTGGA+AGG | 0.494217 | 5.4:+27240844 | None:intergenic |
TTCTTCAATAGTATAAATGT+TGG | 0.495545 | 5.4:+27239985 | None:intergenic |
GATTTCACGGCTACTTGGTG+TGG | 0.515795 | 5.4:-27240230 | MS.gene057606:CDS |
ACATTTATACTATTGAAGAA+AGG | 0.532669 | 5.4:-27239982 | MS.gene057606:CDS |
GTGTGGACCTTGCAAATACA+TGG | 0.544731 | 5.4:-27240213 | MS.gene057606:CDS |
TTCCAAAGTAACAAACAAGC+TGG | 0.568571 | 5.4:-27240804 | MS.gene057606:intron |
GAAACTGATTGAGAAACGTA+GGG | 0.577131 | 5.4:-27239914 | MS.gene057606:CDS |
CCTTCCATTTAGCAGTTGAG+TGG | 0.582577 | 5.4:+27240840 | None:intergenic |
AGAAACTGATTGAGAAACGT+AGG | 0.583938 | 5.4:-27239915 | MS.gene057606:CDS |
ATTGGGTCCATGTATTTGCA+AGG | 0.586486 | 5.4:+27240206 | None:intergenic |
CCACTCAACTGCTAAATGGA+AGG | 0.588835 | 5.4:-27240840 | MS.gene057606:CDS |
TAGCAGTTGAGTGGAAGGTG+AGG | 0.659322 | 5.4:+27240849 | None:intergenic |
TGAGTTCATTAAGATTGACG+TGG | 0.684888 | 5.4:-27240150 | MS.gene057606:CDS |
TGGAAGGTGAGGATGAGCGA+TGG | 0.701264 | 5.4:+27240860 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTCTTAATTATTTTTAAAGA+TGG | - | chr5.4:27240562-27240581 | MS.gene057606:intron | 10.0% |
!! | TAATCAAATATATGTCATAT+AGG | + | chr5.4:27240425-27240444 | None:intergenic | 15.0% |
!! | TATAGATATAAGATATCAAA+AGG | + | chr5.4:27240739-27240758 | None:intergenic | 15.0% |
!!! | AGTTTTCATTTTTTTTTTGT+TGG | + | chr5.4:27240248-27240267 | None:intergenic | 15.0% |
!!! | GCTAAAATTTTCTTATTATT+TGG | - | chr5.4:27240502-27240521 | MS.gene057606:intron | 15.0% |
!!! | GTTAAATAATTTTTCTTAGA+GGG | - | chr5.4:27240166-27240185 | MS.gene057606:CDS | 15.0% |
!!! | TGTTAAATAATTTTTCTTAG+AGG | - | chr5.4:27240165-27240184 | MS.gene057606:CDS | 15.0% |
!!! | TTGTTGGTAAATTAATTATA+TGG | + | chr5.4:27240232-27240251 | None:intergenic | 15.0% |
!! | ACATTTATACTATTGAAGAA+AGG | - | chr5.4:27240838-27240857 | MS.gene057606:CDS | 20.0% |
!! | GATATCAAAAGGTAATTAAA+AGG | + | chr5.4:27240728-27240747 | None:intergenic | 20.0% |
!! | TTCTTCAATAGTATAAATGT+TGG | + | chr5.4:27240838-27240857 | None:intergenic | 20.0% |
!!! | TAATAAGAAAATTTTAGCCA+AGG | + | chr5.4:27240500-27240519 | None:intergenic | 20.0% |
!!! | TTAAAATCGTTTGTTTTATG+AGG | - | chr5.4:27240526-27240545 | MS.gene057606:intron | 20.0% |
!!! | TTTTTAGATACTTTGAAGTT+TGG | + | chr5.4:27240205-27240224 | None:intergenic | 20.0% |
! | AAAACCAAGGTTTCAAAAAA+CGG | - | chr5.4:27240329-27240348 | MS.gene057606:intron | 25.0% |
! | ATGACAACAATAACAATCAT+GGG | + | chr5.4:27240355-27240374 | None:intergenic | 25.0% |
!! | AAATTTTGTGACGAGAAAAA+CGG | + | chr5.4:27240275-27240294 | None:intergenic | 25.0% |
!! | CAGCTAATTCTTTGATAATT+GGG | + | chr5.4:27240634-27240653 | None:intergenic | 25.0% |
!!! | TTTTTCATCGGTTAAAATCT+TGG | + | chr5.4:27240312-27240331 | None:intergenic | 25.0% |
AAAAGTAGTTGAAAAAGTGG+TGG | - | chr5.4:27240861-27240880 | MS.gene057606:CDS | 30.0% | |
AAAGTAGTTGAAAAAGTGGT+GGG | - | chr5.4:27240862-27240881 | MS.gene057606:CDS | 30.0% | |
AGACTCTAAATTGGAAAAGT+TGG | + | chr5.4:27239919-27239938 | None:intergenic | 30.0% | |
AGGAAAAGTAGTTGAAAAAG+TGG | - | chr5.4:27240858-27240877 | MS.gene057606:CDS | 30.0% | |
CATGACAACAATAACAATCA+TGG | + | chr5.4:27240356-27240375 | None:intergenic | 30.0% | |
GATAATGCAAAATGTACCAA+TGG | - | chr5.4:27240773-27240792 | MS.gene057606:intron | 30.0% | |
TAACATTGAATGATTCGATG+AGG | + | chr5.4:27240108-27240127 | None:intergenic | 30.0% | |
TTTAACCGATGAAAAAACCA+AGG | - | chr5.4:27240316-27240335 | MS.gene057606:intron | 30.0% | |
! | CTTAACATTTTCTTTGCACT+CGG | - | chr5.4:27240387-27240406 | MS.gene057606:intron | 30.0% |
! | GCAGCTAATTCTTTGATAAT+TGG | + | chr5.4:27240635-27240654 | None:intergenic | 30.0% |
!! | AAAGATGGTCATTGATTTCA+CGG | - | chr5.4:27240577-27240596 | MS.gene057606:intron | 30.0% |
!!! | TGAAACCTTGGTTTTTTCAT+CGG | + | chr5.4:27240324-27240343 | None:intergenic | 30.0% |
!!! | TTAGCCAAGGTTTTAAATCA+CGG | + | chr5.4:27240487-27240506 | None:intergenic | 30.0% |
AGAAACTGATTGAGAAACGT+AGG | - | chr5.4:27240905-27240924 | MS.gene057606:CDS | 35.0% | |
CAAAATGTACCAATGGAAAC+AGG | - | chr5.4:27240780-27240799 | MS.gene057606:intron | 35.0% | |
CTCAACAACAGACTCTAAAT+TGG | + | chr5.4:27239928-27239947 | None:intergenic | 35.0% | |
GAAACTGATTGAGAAACGTA+GGG | - | chr5.4:27240906-27240925 | MS.gene057606:CDS | 35.0% | |
TGAGTTCATTAAGATTGACG+TGG | - | chr5.4:27240670-27240689 | MS.gene057606:intron | 35.0% | |
TTCCAAAGTAACAAACAAGC+TGG | - | chr5.4:27240016-27240035 | MS.gene057606:CDS | 35.0% | |
! | TACCAGCTTGTTTGTTACTT+TGG | + | chr5.4:27240021-27240040 | None:intergenic | 35.0% |
AATGTACCAATGGAAACAGG+AGG | - | chr5.4:27240783-27240802 | MS.gene057606:intron | 40.0% | |
ATTGGGTCCATGTATTTGCA+AGG | + | chr5.4:27240617-27240636 | None:intergenic | 40.0% | |
GATTGACGTGGATGAGTTAA+TGG | - | chr5.4:27240682-27240701 | MS.gene057606:intron | 40.0% | |
TAAATGGAAGGCTCACTTTG+AGG | - | chr5.4:27239992-27240011 | MS.gene057606:CDS | 40.0% | |
! | AAAAGTGGTGGGAGCAAAAA+AGG | - | chr5.4:27240873-27240892 | MS.gene057606:CDS | 40.0% |
! | ACGACCGTGATTTAAAACCT+TGG | - | chr5.4:27240480-27240499 | MS.gene057606:intron | 40.0% |
!! | TCATTGATTTCACGGCTACT+TGG | - | chr5.4:27240585-27240604 | MS.gene057606:intron | 40.0% |
!!! | AAGGTTTTAAATCACGGTCG+TGG | + | chr5.4:27240481-27240500 | None:intergenic | 40.0% |
ACAACGATGCTCACGTAGTT+TGG | - | chr5.4:27240069-27240088 | MS.gene057606:intron | 45.0% | |
CCACTCAACTGCTAAATGGA+AGG | - | chr5.4:27239980-27239999 | MS.gene057606:CDS | 45.0% | |
CCATTTAGCAGTTGAGTGGA+AGG | + | chr5.4:27239979-27239998 | None:intergenic | 45.0% | |
CCTTCCACTCAACTGCTAAA+TGG | - | chr5.4:27239976-27239995 | MS.gene057606:CDS | 45.0% | |
CCTTCCATTTAGCAGTTGAG+TGG | + | chr5.4:27239983-27240002 | None:intergenic | 45.0% | |
GTGTGGACCTTGCAAATACA+TGG | - | chr5.4:27240607-27240626 | MS.gene057606:intron | 45.0% | |
!!! | TGGGCCGTTTTTTGAAACCT+TGG | + | chr5.4:27240336-27240355 | None:intergenic | 45.0% |
GTACCAATGGAAACAGGAGG+TGG | - | chr5.4:27240786-27240805 | MS.gene057606:intron | 50.0% | |
TAGCAGTTGAGTGGAAGGTG+AGG | + | chr5.4:27239974-27239993 | None:intergenic | 50.0% | |
TTGCCACCTCCTGTTTCCAT+TGG | + | chr5.4:27240792-27240811 | None:intergenic | 50.0% | |
! | GATTTCACGGCTACTTGGTG+TGG | - | chr5.4:27240590-27240609 | MS.gene057606:intron | 50.0% |
GGAGGTGGCAAGTGCATTTC+AGG | - | chr5.4:27240801-27240820 | MS.gene057606:intron | 55.0% | |
TGGAAGGTGAGGATGAGCGA+TGG | + | chr5.4:27239963-27239982 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 27239909 | 27240933 | 27239909 | ID=MS.gene057606 |
chr5.4 | mRNA | 27239909 | 27240933 | 27239909 | ID=MS.gene057606.t1;Parent=MS.gene057606 |
chr5.4 | exon | 27240805 | 27240933 | 27240805 | ID=MS.gene057606.t1.exon1;Parent=MS.gene057606.t1 |
chr5.4 | CDS | 27240805 | 27240933 | 27240805 | ID=cds.MS.gene057606.t1;Parent=MS.gene057606.t1 |
chr5.4 | exon | 27240139 | 27240261 | 27240139 | ID=MS.gene057606.t1.exon2;Parent=MS.gene057606.t1 |
chr5.4 | CDS | 27240139 | 27240261 | 27240139 | ID=cds.MS.gene057606.t1;Parent=MS.gene057606.t1 |
chr5.4 | exon | 27239909 | 27240040 | 27239909 | ID=MS.gene057606.t1.exon3;Parent=MS.gene057606.t1 |
chr5.4 | CDS | 27239909 | 27240040 | 27239909 | ID=cds.MS.gene057606.t1;Parent=MS.gene057606.t1 |
Gene Sequence |
Protein sequence |