Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57132.t1 | XP_013450890.1 | 99 | 103 | 1 | 0 | 1 | 103 | 42 | 144 | 2.20E-55 | 224.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57132.t1 | O49856 | 94.2 | 103 | 6 | 0 | 1 | 103 | 42 | 144 | 8.4e-56 | 217.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57132.t1 | A0A072U5B9 | 99.0 | 103 | 1 | 0 | 1 | 103 | 42 | 144 | 1.6e-55 | 224.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene57132 | 0.900833 | 4.93E-78 | -1.69E-46 |
| MS.gene049173 | MS.gene57132 | 0.81708 | 3.97E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene57132 | 0.830868 | 2.30E-55 | -1.69E-46 |
| MS.gene049222 | MS.gene57132 | 0.861933 | 7.24E-64 | -1.69E-46 |
| MS.gene049281 | MS.gene57132 | -0.809755 | 1.62E-50 | -1.69E-46 |
| MS.gene049285 | MS.gene57132 | 0.890684 | 7.89E-74 | -1.69E-46 |
| MS.gene049320 | MS.gene57132 | 0.896928 | 2.30E-76 | -1.69E-46 |
| MS.gene049609 | MS.gene57132 | 0.816895 | 4.37E-52 | -1.69E-46 |
| MS.gene049633 | MS.gene57132 | 0.831012 | 2.12E-55 | -1.69E-46 |
| MS.gene049634 | MS.gene57132 | -0.807904 | 4.02E-50 | -1.69E-46 |
| MS.gene05010 | MS.gene57132 | 0.849705 | 2.72E-60 | -1.69E-46 |
| MS.gene050163 | MS.gene57132 | 0.884001 | 2.78E-71 | -1.69E-46 |
| MS.gene050165 | MS.gene57132 | 0.89456 | 2.20E-75 | -1.69E-46 |
| MS.gene050170 | MS.gene57132 | 0.808828 | 2.56E-50 | -1.69E-46 |
| MS.gene050323 | MS.gene57132 | 0.823574 | 1.29E-53 | -1.69E-46 |
| MS.gene050333 | MS.gene57132 | 0.882569 | 9.33E-71 | -1.69E-46 |
| MS.gene050444 | MS.gene57132 | 0.851059 | 1.14E-60 | -1.69E-46 |
| MS.gene050496 | MS.gene57132 | 0.817503 | 3.19E-52 | -1.69E-46 |
| MS.gene050504 | MS.gene57132 | 0.89702 | 2.11E-76 | -1.69E-46 |
| MS.gene050518 | MS.gene57132 | 0.878452 | 2.78E-69 | -1.69E-46 |
| MS.gene050577 | MS.gene57132 | 0.83638 | 9.68E-57 | -1.69E-46 |
| MS.gene050612 | MS.gene57132 | 0.907806 | 3.40E-81 | -1.69E-46 |
| MS.gene050675 | MS.gene57132 | 0.855487 | 6.11E-62 | -1.69E-46 |
| MS.gene050699 | MS.gene57132 | 0.876262 | 1.61E-68 | -1.69E-46 |
| MS.gene050772 | MS.gene57132 | 0.839662 | 1.39E-57 | -1.69E-46 |
| MS.gene05079 | MS.gene57132 | -0.821853 | 3.24E-53 | -1.69E-46 |
| MS.gene05080 | MS.gene57132 | 0.83966 | 1.39E-57 | -1.69E-46 |
| MS.gene050832 | MS.gene57132 | -0.831444 | 1.66E-55 | -1.69E-46 |
| MS.gene050833 | MS.gene57132 | -0.833095 | 6.49E-56 | -1.69E-46 |
| MS.gene050868 | MS.gene57132 | 0.839234 | 1.79E-57 | -1.69E-46 |
| MS.gene050871 | MS.gene57132 | 0.832374 | 9.81E-56 | -1.69E-46 |
| MS.gene050876 | MS.gene57132 | 0.81761 | 3.02E-52 | -1.69E-46 |
| MS.gene050904 | MS.gene57132 | 0.818491 | 1.91E-52 | -1.69E-46 |
| MS.gene050986 | MS.gene57132 | 0.873991 | 9.57E-68 | -1.69E-46 |
| MS.gene05100 | MS.gene57132 | 0.828259 | 9.93E-55 | -1.69E-46 |
| MS.gene051044 | MS.gene57132 | -0.807116 | 5.91E-50 | -1.69E-46 |
| MS.gene051127 | MS.gene57132 | -0.800001 | 1.77E-48 | -1.69E-46 |
| MS.gene051138 | MS.gene57132 | -0.845391 | 4.18E-59 | -1.69E-46 |
| MS.gene051228 | MS.gene57132 | 0.836893 | 7.17E-57 | -1.69E-46 |
| MS.gene051317 | MS.gene57132 | 0.872676 | 2.65E-67 | -1.69E-46 |
| MS.gene051364 | MS.gene57132 | -0.82712 | 1.86E-54 | -1.69E-46 |
| MS.gene051366 | MS.gene57132 | -0.840153 | 1.03E-57 | -1.69E-46 |
| MS.gene051551 | MS.gene57132 | 0.828283 | 9.80E-55 | -1.69E-46 |
| MS.gene051579 | MS.gene57132 | -0.806131 | 9.54E-50 | -1.69E-46 |
| MS.gene051617 | MS.gene57132 | 0.804428 | 2.17E-49 | -1.69E-46 |
| MS.gene051651 | MS.gene57132 | -0.808678 | 2.75E-50 | -1.69E-46 |
| MS.gene051749 | MS.gene57132 | -0.811837 | 5.73E-51 | -1.69E-46 |
| MS.gene051810 | MS.gene57132 | 0.866291 | 3.17E-65 | -1.69E-46 |
| MS.gene051949 | MS.gene57132 | 0.869253 | 3.56E-66 | -1.69E-46 |
| MS.gene052129 | MS.gene57132 | -0.840617 | 7.81E-58 | -1.69E-46 |
| MS.gene052164 | MS.gene57132 | 0.803491 | 3.40E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene57132 | 0.810755 | 9.85E-51 | -1.69E-46 |
| MS.gene052482 | MS.gene57132 | 0.802096 | 6.60E-49 | -1.69E-46 |
| MS.gene052506 | MS.gene57132 | 0.807971 | 3.89E-50 | -1.69E-46 |
| MS.gene052822 | MS.gene57132 | 0.826707 | 2.34E-54 | -1.69E-46 |
| MS.gene052870 | MS.gene57132 | 0.802112 | 6.55E-49 | -1.69E-46 |
| MS.gene052872 | MS.gene57132 | 0.816394 | 5.66E-52 | -1.69E-46 |
| MS.gene052966 | MS.gene57132 | 0.805566 | 1.25E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene57132 | 0.830468 | 2.89E-55 | -1.69E-46 |
| MS.gene053207 | MS.gene57132 | 0.803165 | 3.97E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene57132 | 0.83505 | 2.10E-56 | -1.69E-46 |
| MS.gene053284 | MS.gene57132 | 0.851785 | 7.08E-61 | -1.69E-46 |
| MS.gene053285 | MS.gene57132 | 0.833869 | 4.16E-56 | -1.69E-46 |
| MS.gene053286 | MS.gene57132 | 0.833483 | 5.20E-56 | -1.69E-46 |
| MS.gene053479 | MS.gene57132 | 0.811925 | 5.48E-51 | -1.69E-46 |
| MS.gene053561 | MS.gene57132 | -0.82782 | 1.27E-54 | -1.69E-46 |
| MS.gene053632 | MS.gene57132 | 0.833237 | 5.99E-56 | -1.69E-46 |
| MS.gene053824 | MS.gene57132 | 0.814381 | 1.59E-51 | -1.69E-46 |
| MS.gene053916 | MS.gene57132 | 0.832744 | 7.94E-56 | -1.69E-46 |
| MS.gene054374 | MS.gene57132 | 0.811327 | 7.40E-51 | -1.69E-46 |
| MS.gene054555 | MS.gene57132 | -0.814854 | 1.25E-51 | -1.69E-46 |
| MS.gene054600 | MS.gene57132 | 0.840759 | 7.16E-58 | -1.69E-46 |
| MS.gene054642 | MS.gene57132 | 0.883072 | 6.11E-71 | -1.69E-46 |
| MS.gene054706 | MS.gene57132 | -0.807607 | 4.65E-50 | -1.69E-46 |
| MS.gene05470 | MS.gene57132 | 0.864164 | 1.48E-64 | -1.69E-46 |
| MS.gene054954 | MS.gene57132 | 0.88254 | 9.57E-71 | -1.69E-46 |
| MS.gene054959 | MS.gene57132 | -0.825812 | 3.82E-54 | -1.69E-46 |
| MS.gene055134 | MS.gene57132 | -0.831046 | 2.08E-55 | -1.69E-46 |
| MS.gene055154 | MS.gene57132 | -0.827766 | 1.30E-54 | -1.69E-46 |
| MS.gene055204 | MS.gene57132 | -0.823283 | 1.51E-53 | -1.69E-46 |
| MS.gene055206 | MS.gene57132 | 0.824144 | 9.46E-54 | -1.69E-46 |
| MS.gene055289 | MS.gene57132 | 0.801876 | 7.32E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene57132 | 0.888159 | 7.56E-73 | -1.69E-46 |
| MS.gene055502 | MS.gene57132 | 0.884347 | 2.07E-71 | -1.69E-46 |
| MS.gene055577 | MS.gene57132 | 0.878812 | 2.07E-69 | -1.69E-46 |
| MS.gene055638 | MS.gene57132 | 0.812112 | 5.00E-51 | -1.69E-46 |
| MS.gene055748 | MS.gene57132 | 0.892918 | 1.02E-74 | -1.69E-46 |
| MS.gene055750 | MS.gene57132 | 0.846515 | 2.07E-59 | -1.69E-46 |
| MS.gene055751 | MS.gene57132 | 0.895795 | 6.82E-76 | -1.69E-46 |
| MS.gene055776 | MS.gene57132 | 0.865434 | 5.92E-65 | -1.69E-46 |
| MS.gene05589 | MS.gene57132 | 0.83952 | 1.51E-57 | -1.69E-46 |
| MS.gene055941 | MS.gene57132 | 0.800887 | 1.17E-48 | -1.69E-46 |
| MS.gene055942 | MS.gene57132 | -0.838986 | 2.08E-57 | -1.69E-46 |
| MS.gene055956 | MS.gene57132 | -0.862039 | 6.72E-64 | -1.69E-46 |
| MS.gene056224 | MS.gene57132 | -0.809389 | 1.94E-50 | -1.69E-46 |
| MS.gene056374 | MS.gene57132 | 0.80721 | 5.65E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene57132 | 0.853553 | 2.21E-61 | -1.69E-46 |
| MS.gene056510 | MS.gene57132 | 0.842256 | 2.89E-58 | -1.69E-46 |
| MS.gene056550 | MS.gene57132 | -0.83752 | 4.95E-57 | -1.69E-46 |
| MS.gene056657 | MS.gene57132 | 0.870179 | 1.77E-66 | -1.69E-46 |
| MS.gene056692 | MS.gene57132 | 0.869743 | 2.46E-66 | -1.69E-46 |
| MS.gene056761 | MS.gene57132 | -0.810632 | 1.05E-50 | -1.69E-46 |
| MS.gene056856 | MS.gene57132 | -0.832301 | 1.02E-55 | -1.69E-46 |
| MS.gene056898 | MS.gene57132 | 0.833161 | 6.25E-56 | -1.69E-46 |
| MS.gene057129 | MS.gene57132 | 0.822935 | 1.81E-53 | -1.69E-46 |
| MS.gene057246 | MS.gene57132 | 0.869976 | 2.07E-66 | -1.69E-46 |
| MS.gene057416 | MS.gene57132 | 0.811909 | 5.53E-51 | -1.69E-46 |
| MS.gene05753 | MS.gene57132 | 0.802354 | 5.84E-49 | -1.69E-46 |
| MS.gene057606 | MS.gene57132 | -0.802594 | 5.21E-49 | -1.69E-46 |
| MS.gene057658 | MS.gene57132 | 0.830844 | 2.34E-55 | -1.69E-46 |
| MS.gene057831 | MS.gene57132 | 0.811884 | 5.60E-51 | -1.69E-46 |
| MS.gene057986 | MS.gene57132 | 0.831748 | 1.40E-55 | -1.69E-46 |
| MS.gene058334 | MS.gene57132 | -0.849881 | 2.43E-60 | -1.69E-46 |
| MS.gene058335 | MS.gene57132 | 0.816962 | 4.22E-52 | -1.69E-46 |
| MS.gene05837 | MS.gene57132 | 0.820111 | 8.15E-53 | -1.69E-46 |
| MS.gene058419 | MS.gene57132 | 0.891811 | 2.83E-74 | -1.69E-46 |
| MS.gene058544 | MS.gene57132 | 0.874783 | 5.16E-68 | -1.69E-46 |
| MS.gene058603 | MS.gene57132 | -0.820047 | 8.43E-53 | -1.69E-46 |
| MS.gene058723 | MS.gene57132 | 0.853941 | 1.71E-61 | -1.69E-46 |
| MS.gene058773 | MS.gene57132 | 0.889761 | 1.81E-73 | -1.69E-46 |
| MS.gene058838 | MS.gene57132 | 0.843757 | 1.15E-58 | -1.69E-46 |
| MS.gene059022 | MS.gene57132 | 0.897636 | 1.16E-76 | -1.69E-46 |
| MS.gene059023 | MS.gene57132 | 0.86821 | 7.73E-66 | -1.69E-46 |
| MS.gene059029 | MS.gene57132 | 0.817227 | 3.68E-52 | -1.69E-46 |
| MS.gene059079 | MS.gene57132 | 0.838135 | 3.44E-57 | -1.69E-46 |
| MS.gene05913 | MS.gene57132 | 0.804812 | 1.80E-49 | -1.69E-46 |
| MS.gene05914 | MS.gene57132 | 0.848997 | 4.29E-60 | -1.69E-46 |
| MS.gene059677 | MS.gene57132 | 0.920606 | 1.03E-87 | -1.69E-46 |
| MS.gene059718 | MS.gene57132 | 0.860759 | 1.65E-63 | -1.69E-46 |
| MS.gene059756 | MS.gene57132 | 0.844126 | 9.17E-59 | -1.69E-46 |
| MS.gene059865 | MS.gene57132 | 0.865081 | 7.65E-65 | -1.69E-46 |
| MS.gene060336 | MS.gene57132 | -0.807806 | 4.22E-50 | -1.69E-46 |
| MS.gene060337 | MS.gene57132 | -0.852749 | 3.76E-61 | -1.69E-46 |
| MS.gene060703 | MS.gene57132 | 0.839023 | 2.03E-57 | -1.69E-46 |
| MS.gene060762 | MS.gene57132 | 0.886068 | 4.72E-72 | -1.69E-46 |
| MS.gene06077 | MS.gene57132 | 0.856233 | 3.69E-62 | -1.69E-46 |
| MS.gene060823 | MS.gene57132 | -0.829313 | 5.52E-55 | -1.69E-46 |
| MS.gene06092 | MS.gene57132 | 0.845102 | 5.01E-59 | -1.69E-46 |
| MS.gene060982 | MS.gene57132 | 0.842757 | 2.13E-58 | -1.69E-46 |
| MS.gene061044 | MS.gene57132 | -0.823616 | 1.26E-53 | -1.69E-46 |
| MS.gene061150 | MS.gene57132 | 0.875384 | 3.21E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57132.t1 | MTR_6g008220 | 99.029 | 103 | 1 | 0 | 1 | 103 | 42 | 144 | 2.36e-76 | 221 |
| MS.gene57132.t1 | MTR_6g008220 | 99.029 | 103 | 1 | 0 | 1 | 103 | 1 | 103 | 2.39e-75 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57132.t1 | AT2G04700 | 88.350 | 103 | 12 | 0 | 1 | 103 | 44 | 146 | 6.14e-69 | 203 |
| MS.gene57132.t1 | AT2G04700 | 88.350 | 103 | 12 | 0 | 1 | 103 | 44 | 146 | 6.14e-69 | 203 |
| MS.gene57132.t1 | AT2G04700 | 63.529 | 85 | 29 | 1 | 21 | 103 | 6 | 90 | 9.69e-34 | 112 |
Find 24 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGGCTGCGCAAGGATTT+TGG | 0.152975 | 6.2:-4063005 | MS.gene57132:CDS |
| GTGCACCCAATGAATCTTTA+TGG | 0.264541 | 6.2:+4063394 | None:intergenic |
| AAAAGAATGTTCCTGATTTA+CGG | 0.288914 | 6.2:+4065014 | None:intergenic |
| GTGCACCACTCTGCCCTTGC+CGG | 0.356354 | 6.2:-4063377 | MS.gene57132:intron |
| GGCTGACCATAAAGATTCAT+TGG | 0.360393 | 6.2:-4063400 | MS.gene57132:CDS |
| TCGCCGGCAAAATCGTTATC+AGG | 0.384591 | 6.2:+4062237 | None:intergenic |
| GAGCAATATGCCCGTAAATC+AGG | 0.400997 | 6.2:-4065025 | MS.gene57132:CDS |
| AAAGAATGTTCCTGATTTAC+GGG | 0.415753 | 6.2:+4065015 | None:intergenic |
| AACAGCAGTTACTCCTTTGT+CGG | 0.421470 | 6.2:+4064988 | None:intergenic |
| TGCCTTGCAGACTATCACCT+TGG | 0.428260 | 6.2:-4062102 | MS.gene57132:intron |
| GCTGACCATAAAGATTCATT+GGG | 0.479818 | 6.2:-4063399 | MS.gene57132:CDS |
| CTCTCTCTCATGGGAACACA+CGG | 0.481015 | 6.2:+4062976 | None:intergenic |
| ATGTGCCTACCTCTCTCTCA+TGG | 0.500306 | 6.2:+4062966 | None:intergenic |
| AGTAACTGCTGTTGTTATCA+AGG | 0.507865 | 6.2:-4064978 | MS.gene57132:intron |
| TGATTCTTTAATTTCATCCA+AGG | 0.519163 | 6.2:+4062085 | None:intergenic |
| CGGAATTACCTGTTCATCGC+CGG | 0.528238 | 6.2:+4062221 | None:intergenic |
| CAAGAAGTATTTACCGGCAA+GGG | 0.563318 | 6.2:+4063364 | None:intergenic |
| TGTGCCTACCTCTCTCTCAT+GGG | 0.575835 | 6.2:+4062967 | None:intergenic |
| ACAAGAAGTATTTACCGGCA+AGG | 0.590984 | 6.2:+4063363 | None:intergenic |
| AAAGCTGCTGAGGCTGCGCA+AGG | 0.592198 | 6.2:-4063012 | MS.gene57132:CDS |
| CGTGTGTTCCCATGAGAGAG+AGG | 0.615907 | 6.2:-4062975 | MS.gene57132:intron |
| TTATGACGATAAAGCTGCTG+AGG | 0.616351 | 6.2:-4063022 | MS.gene57132:CDS |
| TCTCTCTCATGGGAACACAC+GGG | 0.712722 | 6.2:+4062977 | None:intergenic |
| ATTTACCGGCAAGGGCAGAG+TGG | 0.719195 | 6.2:+4063372 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAATTTTACTATGTTAT+AGG | + | chr6.2:4064469-4064488 | None:intergenic | 10.0% |
| !! | ATGAAACTACAATTTATATT+TGG | + | chr6.2:4062202-4062221 | None:intergenic | 15.0% |
| !! | TTTGAAAATGTATTTATTAG+TGG | - | chr6.2:4062795-4062814 | MS.gene57132:intron | 15.0% |
| !!! | CTTTTTTTTTTTTTTTGTGT+GGG | - | chr6.2:4062378-4062397 | MS.gene57132:intron | 15.0% |
| !!! | GATATTTTGTTTAAAGATAT+TGG | - | chr6.2:4064527-4064546 | MS.gene57132:intron | 15.0% |
| !!! | TCTTTTTTTTTTTTTTTGTG+TGG | - | chr6.2:4062377-4062396 | MS.gene57132:intron | 15.0% |
| !!! | TTTTGTTTCATTTTCATAAA+CGG | - | chr6.2:4062336-4062355 | MS.gene57132:intron | 15.0% |
| !! | AAAAACAAATATGGAAATGA+AGG | - | chr6.2:4063483-4063502 | MS.gene57132:intron | 20.0% |
| !! | AAAACAAATATGGAAATGAA+GGG | - | chr6.2:4063484-4063503 | MS.gene57132:intron | 20.0% |
| !! | AGAACACTATACTAATTTAT+GGG | - | chr6.2:4063088-4063107 | MS.gene57132:intron | 20.0% |
| !! | AGTTAAGAAAACAATATTCT+GGG | + | chr6.2:4064801-4064820 | None:intergenic | 20.0% |
| !! | ATCATAACAAAATTTACACA+GGG | + | chr6.2:4063352-4063371 | None:intergenic | 20.0% |
| !! | CATGGAATAATTAATGTATT+TGG | + | chr6.2:4064272-4064291 | None:intergenic | 20.0% |
| !! | CATTGAATAACTAATGTATT+TGG | - | chr6.2:4064233-4064252 | MS.gene57132:intron | 20.0% |
| !! | CCATTCCAAAAATTTAAATT+AGG | + | chr6.2:4063009-4063028 | None:intergenic | 20.0% |
| !! | TAGAACACTATACTAATTTA+TGG | - | chr6.2:4063087-4063106 | MS.gene57132:intron | 20.0% |
| !!! | ACAAATAACATATTTAGAAC+TGG | + | chr6.2:4064691-4064710 | None:intergenic | 20.0% |
| !!! | ATATGTTATTTGTCAAGAAA+TGG | - | chr6.2:4064698-4064717 | MS.gene57132:intron | 20.0% |
| !!! | CCTAATTTAAATTTTTGGAA+TGG | - | chr6.2:4063006-4063025 | MS.gene57132:CDS | 20.0% |
| !!! | TAAATTTTTGGAATGGATAA+TGG | - | chr6.2:4063013-4063032 | MS.gene57132:CDS | 20.0% |
| !!! | TAAGCAAAACATAACTTTTT+AGG | - | chr6.2:4064208-4064227 | MS.gene57132:intron | 20.0% |
| !!! | TAATAATCTGTTTGTTTTGT+TGG | + | chr6.2:4064953-4064972 | None:intergenic | 20.0% |
| !!! | TATTTTGATAAACAGAATCA+CGG | + | chr6.2:4064912-4064931 | None:intergenic | 20.0% |
| !!! | TCGAACCTAATTTAAATTTT+TGG | - | chr6.2:4063001-4063020 | MS.gene57132:CDS | 20.0% |
| !!! | TTTTTAGGATTTTGTAAGTA+GGG | - | chr6.2:4062659-4062678 | MS.gene57132:intron | 20.0% |
| !!! | TTTTTGCTTATAAATATGAC+CGG | - | chr6.2:4064307-4064326 | MS.gene57132:intron | 20.0% |
| ! | AAAAGAATGTTCCTGATTTA+CGG | + | chr6.2:4062099-4062118 | None:intergenic | 25.0% |
| ! | AATTCGTTGCATTTATACTT+CGG | + | chr6.2:4062887-4062906 | None:intergenic | 25.0% |
| ! | ATCAAAACAAAATTCACACA+GGG | + | chr6.2:4063299-4063318 | None:intergenic | 25.0% |
| ! | ATTGAATTCAAAGTTGAGAA+AGG | + | chr6.2:4062544-4062563 | None:intergenic | 25.0% |
| ! | CTGATAACAGATATTTACTT+TGG | - | chr6.2:4063640-4063659 | MS.gene57132:intron | 25.0% |
| ! | GAAAATGTATTTATTAGTGG+TGG | - | chr6.2:4062798-4062817 | MS.gene57132:intron | 25.0% |
| ! | GACTTTCTTAGTTTATATCT+TGG | - | chr6.2:4064649-4064668 | MS.gene57132:intron | 25.0% |
| ! | GAGTTAAGAAAACAATATTC+TGG | + | chr6.2:4064802-4064821 | None:intergenic | 25.0% |
| ! | GATCATAACAAAATTTACAC+AGG | + | chr6.2:4063353-4063372 | None:intergenic | 25.0% |
| ! | GTTAAGAAAACAATATTCTG+GGG | + | chr6.2:4064800-4064819 | None:intergenic | 25.0% |
| ! | GTTATTACAAAATACGATCA+TGG | + | chr6.2:4064624-4064643 | None:intergenic | 25.0% |
| ! | TAAACAAACTGATAGTTTCT+GGG | - | chr6.2:4064485-4064504 | MS.gene57132:intron | 25.0% |
| ! | TATAAACTAAGAAAGTCACT+CGG | + | chr6.2:4064646-4064665 | None:intergenic | 25.0% |
| ! | TATTTAATAACACTGCAACA+AGG | + | chr6.2:4063777-4063796 | None:intergenic | 25.0% |
| ! | TTAAACAAACTGATAGTTTC+TGG | - | chr6.2:4064484-4064503 | MS.gene57132:intron | 25.0% |
| ! | TTAAGAAAACAATATTCTGG+GGG | + | chr6.2:4064799-4064818 | None:intergenic | 25.0% |
| ! | TTCAAACCATATCTGATTAA+AGG | + | chr6.2:4062781-4062800 | None:intergenic | 25.0% |
| !! | AACGTTTCTGTTTTATATAC+AGG | - | chr6.2:4063189-4063208 | MS.gene57132:intron | 25.0% |
| !! | AAGTTTGAAAATGAGTTTTC+CGG | - | chr6.2:4063555-4063574 | MS.gene57132:intron | 25.0% |
| !! | ATTGTTTTCTTAACTCATTG+TGG | - | chr6.2:4064806-4064825 | MS.gene57132:intron | 25.0% |
| !! | GAAAATTTTCCTATACATCT+TGG | - | chr6.2:4063454-4063473 | MS.gene57132:intron | 25.0% |
| !! | TAAGCAAAAAACAACTTTTG+AGG | + | chr6.2:4064297-4064316 | None:intergenic | 25.0% |
| !! | TATTTTACGTTAAGAAACAG+AGG | + | chr6.2:4063375-4063394 | None:intergenic | 25.0% |
| !! | TGATTCTTTAATTTCATCCA+AGG | + | chr6.2:4065028-4065047 | None:intergenic | 25.0% |
| !!! | AAATCTTCCTAAAAGTACTT+TGG | + | chr6.2:4063158-4063177 | None:intergenic | 25.0% |
| !!! | AATCTTCCTAAAAGTACTTT+GGG | + | chr6.2:4063157-4063176 | None:intergenic | 25.0% |
| !!! | CTTTATTGGTTTCAAATGTT+AGG | - | chr6.2:4062606-4062625 | MS.gene57132:intron | 25.0% |
| !!! | GTAAAACAAGAAGTATTTAC+CGG | + | chr6.2:4063755-4063774 | None:intergenic | 25.0% |
| !!! | GTTTTTAGGATTTTGTAAGT+AGG | - | chr6.2:4062658-4062677 | MS.gene57132:intron | 25.0% |
| !!! | TACTGATATTGTTTCTACTT+TGG | - | chr6.2:4063677-4063696 | MS.gene57132:intron | 25.0% |
| !!! | TTGTTTTTTGAGCTCTTTAT+TGG | - | chr6.2:4062592-4062611 | MS.gene57132:intron | 25.0% |
| AAAACCAGAAGATCAAAACA+GGG | + | chr6.2:4063323-4063342 | None:intergenic | 30.0% | |
| AAACCATATCTGATTAAAGG+TGG | + | chr6.2:4062778-4062797 | None:intergenic | 30.0% | |
| AAAGAATGTTCCTGATTTAC+GGG | + | chr6.2:4062098-4062117 | None:intergenic | 30.0% | |
| AACCATATCTGATTAAAGGT+GGG | + | chr6.2:4062777-4062796 | None:intergenic | 30.0% | |
| AATGTTGTTGAATCAAGTCT+CGG | - | chr6.2:4062243-4062262 | MS.gene57132:CDS | 30.0% | |
| ACAAAATTGTCTTTGCAACA+AGG | + | chr6.2:4063961-4063980 | None:intergenic | 30.0% | |
| ACATGATCAATTGTGCAATT+AGG | + | chr6.2:4063413-4063432 | None:intergenic | 30.0% | |
| ACATTTGCATCAACAACTAA+AGG | + | chr6.2:4062228-4062247 | None:intergenic | 30.0% | |
| AGTACAAAATGTTGTGCAAT+AGG | - | chr6.2:4063873-4063892 | MS.gene57132:intron | 30.0% | |
| ATTCAAAAATCATCTTCCCA+TGG | - | chr6.2:4063239-4063258 | MS.gene57132:intron | 30.0% | |
| CTTAGTTTATATCTTGGTTG+AGG | - | chr6.2:4064655-4064674 | MS.gene57132:intron | 30.0% | |
| GATCAAAACAAAATTCACAC+AGG | + | chr6.2:4063300-4063319 | None:intergenic | 30.0% | |
| GTGTCTTTATTCTATAGTTC+TGG | - | chr6.2:4063979-4063998 | MS.gene57132:intron | 30.0% | |
| GTTCAAAAAACAAGTACCAT+GGG | + | chr6.2:4063258-4063277 | None:intergenic | 30.0% | |
| TAAAACAGAAACGTTGTGTT+TGG | + | chr6.2:4063184-4063203 | None:intergenic | 30.0% | |
| TAAAACCAGAAGATCAAAAC+AGG | + | chr6.2:4063324-4063343 | None:intergenic | 30.0% | |
| TAAATGCAACGAATTTGAAG+TGG | - | chr6.2:4062892-4062911 | MS.gene57132:intron | 30.0% | |
| TGTTCAAAAAACAAGTACCA+TGG | + | chr6.2:4063259-4063278 | None:intergenic | 30.0% | |
| TTATCAGTTCTATGCATACA+CGG | + | chr6.2:4063627-4063646 | None:intergenic | 30.0% | |
| ! | ACCTAGAAGTTTTACGTTAT+GGG | - | chr6.2:4062686-4062705 | MS.gene57132:intron | 30.0% |
| ! | CAATTAGGAGCATATAAAAG+TGG | + | chr6.2:4063398-4063417 | None:intergenic | 30.0% |
| ! | CGAACTTGATAACTTAAAGT+CGG | + | chr6.2:4064351-4064370 | None:intergenic | 30.0% |
| ! | CTCAAAAAACAAGTTGAGAA+AGG | + | chr6.2:4062584-4062603 | None:intergenic | 30.0% |
| ! | GCCTAAAACACAGTAATTTT+GGG | + | chr6.2:4064067-4064086 | None:intergenic | 30.0% |
| ! | GTTTGATACAGTTGTTTCAT+AGG | + | chr6.2:4064588-4064607 | None:intergenic | 30.0% |
| ! | TAATTTGGACAAACTGCTTT+TGG | - | chr6.2:4063833-4063852 | MS.gene57132:intron | 30.0% |
| ! | TCCCAAAATTACTGTGTTTT+AGG | - | chr6.2:4064063-4064082 | MS.gene57132:intron | 30.0% |
| ! | TGCCTAAAACACAGTAATTT+TGG | + | chr6.2:4064068-4064087 | None:intergenic | 30.0% |
| !! | ACTTCGGCACTTTAAAATTT+GGG | + | chr6.2:4062871-4062890 | None:intergenic | 30.0% |
| !! | ATTGTTTCTACTTTGGAACA+GGG | - | chr6.2:4063684-4063703 | MS.gene57132:intron | 30.0% |
| !! | GCTGATATATGTTTCTAGTT+GGG | - | chr6.2:4062636-4062655 | MS.gene57132:intron | 30.0% |
| !! | GTAATACCCAAAGTACTTTT+AGG | - | chr6.2:4063148-4063167 | MS.gene57132:intron | 30.0% |
| !! | TACTTCGGCACTTTAAAATT+TGG | + | chr6.2:4062872-4062891 | None:intergenic | 30.0% |
| !! | TATTGTTTCTACTTTGGAAC+AGG | - | chr6.2:4063683-4063702 | MS.gene57132:intron | 30.0% |
| !! | TCTTTATTCTATAGTTCTGG+CGG | - | chr6.2:4063982-4064001 | MS.gene57132:intron | 30.0% |
| !! | TGCTGATATATGTTTCTAGT+TGG | - | chr6.2:4062635-4062654 | MS.gene57132:intron | 30.0% |
| !! | TGGTAGTGGAAAAACAAATA+TGG | - | chr6.2:4063474-4063493 | MS.gene57132:intron | 30.0% |
| !!! | AAAACAACTTTTGAGGTTCA+TGG | + | chr6.2:4064290-4064309 | None:intergenic | 30.0% |
| !!! | ATGTTTCTAGTTGGGTTTTT+AGG | - | chr6.2:4062644-4062663 | MS.gene57132:intron | 30.0% |
| !!! | TGTGGTTTTGTTTGATAGAA+AGG | - | chr6.2:4064824-4064843 | MS.gene57132:intron | 30.0% |
| AAACCAGAAGATCAAAACAG+GGG | + | chr6.2:4063322-4063341 | None:intergenic | 35.0% | |
| AAAGTTGAGAAAGGACAATC+TGG | + | chr6.2:4062535-4062554 | None:intergenic | 35.0% | |
| AGTAACTGCTGTTGTTATCA+AGG | - | chr6.2:4062132-4062151 | MS.gene57132:intron | 35.0% | |
| ATCCTGTAATACATTGACGA+TGG | - | chr6.2:4062978-4062997 | MS.gene57132:CDS | 35.0% | |
| CAAATTATGCTACGCTATAG+TGG | + | chr6.2:4063820-4063839 | None:intergenic | 35.0% | |
| CACTATAGCGTAGCATAATT+TGG | - | chr6.2:4063818-4063837 | MS.gene57132:intron | 35.0% | |
| CATGGGAGATTCATTATTGT+TGG | - | chr6.2:4062308-4062327 | MS.gene57132:intron | 35.0% | |
| GCTGACCATAAAGATTCATT+GGG | - | chr6.2:4063711-4063730 | MS.gene57132:intron | 35.0% | |
| TGATAACTTAAAGTCGGAGA+AGG | + | chr6.2:4064345-4064364 | None:intergenic | 35.0% | |
| TGCTTATAAATATGACCGGA+GGG | - | chr6.2:4064311-4064330 | MS.gene57132:intron | 35.0% | |
| TGCTTATAAATGTGACCAGA+GGG | + | chr6.2:4064194-4064213 | None:intergenic | 35.0% | |
| TTATACTACTAGCTGCTACT+TGG | - | chr6.2:4062471-4062490 | MS.gene57132:intron | 35.0% | |
| TTGCTTATAAATATGACCGG+AGG | - | chr6.2:4064310-4064329 | MS.gene57132:intron | 35.0% | |
| TTGCTTATAAATGTGACCAG+AGG | + | chr6.2:4064195-4064214 | None:intergenic | 35.0% | |
| TTGTACTAAATAGCGTATCG+CGG | + | chr6.2:4063860-4063879 | None:intergenic | 35.0% | |
| TTTCCACTACCAAGATGTAT+AGG | + | chr6.2:4063466-4063485 | None:intergenic | 35.0% | |
| TTTCCTATACATCTTGGTAG+TGG | - | chr6.2:4063460-4063479 | MS.gene57132:intron | 35.0% | |
| TTTGGATAGCAGAAAATAGC+AGG | + | chr6.2:4063925-4063944 | None:intergenic | 35.0% | |
| ! | ATTTTGTTGAACGTGAGTCA+TGG | - | chr6.2:4062290-4062309 | MS.gene57132:intron | 35.0% |
| ! | CAAGGCAGTGTTATCAATTT+TGG | + | chr6.2:4063943-4063962 | None:intergenic | 35.0% |
| ! | CCTAGAAGTTTTACGTTATG+GGG | - | chr6.2:4062687-4062706 | MS.gene57132:intron | 35.0% |
| ! | CTAGAAGTTTTACGTTATGG+GGG | - | chr6.2:4062688-4062707 | MS.gene57132:intron | 35.0% |
| ! | GACCTAGAAGTTTTACGTTA+TGG | - | chr6.2:4062685-4062704 | MS.gene57132:intron | 35.0% |
| ! | GAGTAAGAAAAAGCATGCAA+TGG | + | chr6.2:4064854-4064873 | None:intergenic | 35.0% |
| ! | TTTTGTTGAACGTGAGTCAT+GGG | - | chr6.2:4062291-4062310 | MS.gene57132:intron | 35.0% |
| !! | AAACTGATAGTTTCTGGGAT+CGG | - | chr6.2:4064490-4064509 | MS.gene57132:intron | 35.0% |
| !! | GTAATTTTGGGAGTAAGCTT+AGG | + | chr6.2:4064055-4064074 | None:intergenic | 35.0% |
| AAATTTGGGTAGGCCTAACT+CGG | + | chr6.2:4062857-4062876 | None:intergenic | 40.0% | |
| AACAGCAGTTACTCCTTTGT+CGG | + | chr6.2:4062125-4062144 | None:intergenic | 40.0% | |
| AACCTCCAAGTTTGATATGC+TGG | - | chr6.2:4063518-4063537 | MS.gene57132:intron | 40.0% | |
| ACCTCCAAGTTTGATATGCT+GGG | - | chr6.2:4063519-4063538 | MS.gene57132:intron | 40.0% | |
| CCCCATAACGTAAAACTTCT+AGG | + | chr6.2:4062690-4062709 | None:intergenic | 40.0% | |
| GACCATCGTCAATGTATTAC+AGG | + | chr6.2:4062983-4063002 | None:intergenic | 40.0% | |
| GCCTATCAACAATGACAATC+CGG | + | chr6.2:4063577-4063596 | None:intergenic | 40.0% | |
| GGCTGACCATAAAGATTCAT+TGG | - | chr6.2:4063710-4063729 | MS.gene57132:intron | 40.0% | |
| GTCCCACCTTTAATCAGATA+TGG | - | chr6.2:4062772-4062791 | MS.gene57132:intron | 40.0% | |
| GTGCACCCAATGAATCTTTA+TGG | + | chr6.2:4063719-4063738 | None:intergenic | 40.0% | |
| TCATCCCAGCATATCAAACT+TGG | + | chr6.2:4063526-4063545 | None:intergenic | 40.0% | |
| TCCGGATTGTCATTGTTGAT+AGG | - | chr6.2:4063573-4063592 | MS.gene57132:intron | 40.0% | |
| TTATGACGATAAAGCTGCTG+AGG | - | chr6.2:4064088-4064107 | MS.gene57132:intron | 40.0% | |
| ! | CCATTACCAAAACTGGCTTA+TGG | + | chr6.2:4062834-4062853 | None:intergenic | 40.0% |
| !! | ACAAGAAGTATTTACCGGCA+AGG | + | chr6.2:4063750-4063769 | None:intergenic | 40.0% |
| !! | ACATTCTTTTGTGCCGACAA+AGG | - | chr6.2:4062109-4062128 | MS.gene57132:intron | 40.0% |
| !! | ACTCCTGATAACGATTTTGC+CGG | - | chr6.2:4064870-4064889 | MS.gene57132:intron | 40.0% |
| !! | CAAGAAGTATTTACCGGCAA+GGG | + | chr6.2:4063749-4063768 | None:intergenic | 40.0% |
| !! | CCATAAGCCAGTTTTGGTAA+TGG | - | chr6.2:4062831-4062850 | MS.gene57132:intron | 40.0% |
| !! | CGGCACTTTAAAATTTGGGT+AGG | + | chr6.2:4062867-4062886 | None:intergenic | 40.0% |
| !! | TTCTACTTTGGAACAGGGTT+TGG | - | chr6.2:4063689-4063708 | MS.gene57132:intron | 40.0% |
| !!! | GGGATCTTTACCTGTTTTTG+TGG | - | chr6.2:4062398-4062417 | MS.gene57132:intron | 40.0% |
| AACTCGGCCATTACCAAAAC+TGG | + | chr6.2:4062841-4062860 | None:intergenic | 45.0% | |
| ATCCAAGGTGATAGTCTGCA+AGG | + | chr6.2:4065013-4065032 | None:intergenic | 45.0% | |
| ATCTACGTCTATCACTGTGG+TGG | + | chr6.2:4062938-4062957 | None:intergenic | 45.0% | |
| CACTCACACACCACAAAAAC+AGG | + | chr6.2:4062411-4062430 | None:intergenic | 45.0% | |
| CAGATCTACGTCTATCACTG+TGG | + | chr6.2:4062941-4062960 | None:intergenic | 45.0% | |
| GAGAAGGAAAATACTCCCTC+CGG | + | chr6.2:4064329-4064348 | None:intergenic | 45.0% | |
| GAGCAATATGCCCGTAAATC+AGG | - | chr6.2:4062085-4062104 | MS.gene57132:CDS | 45.0% | |
| GGTAGGCACATCTTTACAAC+TGG | - | chr6.2:4064156-4064175 | MS.gene57132:intron | 45.0% | |
| TCCCAGCATATCAAACTTGG+AGG | + | chr6.2:4063523-4063542 | None:intergenic | 45.0% | |
| TCTACGTCTATCACTGTGGT+GGG | + | chr6.2:4062937-4062956 | None:intergenic | 45.0% | |
| TGGCTATTACTTACTCCCTC+TGG | - | chr6.2:4064176-4064195 | MS.gene57132:intron | 45.0% | |
| ! | ACCAAAACTGGCTTATGGAG+AGG | + | chr6.2:4062829-4062848 | None:intergenic | 45.0% |
| ! | TCCTCTCCATAAGCCAGTTT+TGG | - | chr6.2:4062825-4062844 | MS.gene57132:intron | 45.0% |
| !! | ATTCTATAGTTCTGGCGGTG+TGG | - | chr6.2:4063987-4064006 | MS.gene57132:intron | 45.0% |
| !!! | GATCCCCTGTTTTGATCTTC+TGG | - | chr6.2:4063316-4063335 | MS.gene57132:intron | 45.0% |
| !!! | GTTTTGGTAATGGCCGAGTT+AGG | - | chr6.2:4062841-4062860 | MS.gene57132:intron | 45.0% |
| ATGTGCCTACCTCTCTCTCA+TGG | + | chr6.2:4064147-4064166 | None:intergenic | 50.0% | |
| CGGAATTACCTGTTCATCGC+CGG | + | chr6.2:4064892-4064911 | None:intergenic | 50.0% | |
| CTACGTCTATCACTGTGGTG+GGG | + | chr6.2:4062936-4062955 | None:intergenic | 50.0% | |
| CTCTCTCTCATGGGAACACA+CGG | + | chr6.2:4064137-4064156 | None:intergenic | 50.0% | |
| TACGTCTATCACTGTGGTGG+GGG | + | chr6.2:4062935-4062954 | None:intergenic | 50.0% | |
| TCGCCGGCAAAATCGTTATC+AGG | + | chr6.2:4064876-4064895 | None:intergenic | 50.0% | |
| TCTCTCTCATGGGAACACAC+GGG | + | chr6.2:4064136-4064155 | None:intergenic | 50.0% | |
| TGCCTTGCAGACTATCACCT+TGG | - | chr6.2:4065008-4065027 | MS.gene57132:CDS | 50.0% | |
| TGTGCCTACCTCTCTCTCAT+GGG | + | chr6.2:4064146-4064165 | None:intergenic | 50.0% | |
| TGTTCCCATGAGAGAGAGGT+AGG | - | chr6.2:4064139-4064158 | MS.gene57132:intron | 50.0% | |
| ATTTACCGGCAAGGGCAGAG+TGG | + | chr6.2:4063741-4063760 | None:intergenic | 55.0% | |
| CGTGTGTTCCCATGAGAGAG+AGG | - | chr6.2:4064135-4064154 | MS.gene57132:intron | 55.0% | |
| GGCGGTGTGGTTGCATACAT+AGG | - | chr6.2:4064000-4064019 | MS.gene57132:intron | 55.0% | |
| ! | CGATTTTGCCGGCGATGAAC+AGG | - | chr6.2:4064881-4064900 | MS.gene57132:intron | 55.0% |
| ! | CTGAGGCTGCGCAAGGATTT+TGG | - | chr6.2:4064105-4064124 | MS.gene57132:intron | 55.0% |
| AAAGCTGCTGAGGCTGCGCA+AGG | - | chr6.2:4064098-4064117 | MS.gene57132:intron | 60.0% | |
| GTGCACCACTCTGCCCTTGC+CGG | - | chr6.2:4063733-4063752 | MS.gene57132:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 4062070 | 4065062 | 4062070 | ID=MS.gene57132 |
| chr6.2 | mRNA | 4062070 | 4065062 | 4062070 | ID=MS.gene57132.t1;Parent=MS.gene57132 |
| chr6.2 | exon | 4064979 | 4065062 | 4064979 | ID=MS.gene57132.t1.exon1;Parent=MS.gene57132.t1 |
| chr6.2 | CDS | 4064979 | 4065062 | 4064979 | ID=cds.MS.gene57132.t1;Parent=MS.gene57132.t1 |
| chr6.2 | exon | 4063378 | 4063427 | 4063378 | ID=MS.gene57132.t1.exon2;Parent=MS.gene57132.t1 |
| chr6.2 | CDS | 4063378 | 4063427 | 4063378 | ID=cds.MS.gene57132.t1;Parent=MS.gene57132.t1 |
| chr6.2 | exon | 4062976 | 4063047 | 4062976 | ID=MS.gene57132.t1.exon3;Parent=MS.gene57132.t1 |
| chr6.2 | CDS | 4062976 | 4063047 | 4062976 | ID=cds.MS.gene57132.t1;Parent=MS.gene57132.t1 |
| chr6.2 | exon | 4062230 | 4062290 | 4062230 | ID=MS.gene57132.t1.exon4;Parent=MS.gene57132.t1 |
| chr6.2 | CDS | 4062230 | 4062290 | 4062230 | ID=cds.MS.gene57132.t1;Parent=MS.gene57132.t1 |
| chr6.2 | exon | 4062070 | 4062114 | 4062070 | ID=MS.gene57132.t1.exon5;Parent=MS.gene57132.t1 |
| chr6.2 | CDS | 4062070 | 4062114 | 4062070 | ID=cds.MS.gene57132.t1;Parent=MS.gene57132.t1 |
| Gene Sequence |
| Protein sequence |
