AlfalfaGEDB | MS.gene50620

M. sativa cultivar XinJiangDaYe / MS.gene50620

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
PFAM: PF03171.23 PF14226.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50620.t1	XP_024635510.1	96.8	344	11	0	1	344	1	344	1.00E-197	699.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50620.t1	P24397	41.5	349	185	8	1	338	1	341	7.1e-67	255.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50620.t1	A0A396JUZ7	96.8	344	11	0	1	344	1	344	7.2e-198	699.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene50620	-0.806836	6.78E-50	-1.69E-46
MS.gene04921	MS.gene50620	0.809577	1.77E-50	-1.69E-46
MS.gene050170	MS.gene50620	-0.825358	4.90E-54	-1.69E-46
MS.gene050323	MS.gene50620	-0.807413	5.12E-50	-1.69E-46
MS.gene050338	MS.gene50620	0.821716	3.48E-53	-1.69E-46
MS.gene050496	MS.gene50620	-0.843465	1.38E-58	-1.69E-46
MS.gene050577	MS.gene50620	-0.802619	5.15E-49	-1.69E-46
MS.gene050612	MS.gene50620	-0.801284	9.68E-49	-1.69E-46
MS.gene050868	MS.gene50620	-0.805929	1.05E-49	-1.69E-46
MS.gene050871	MS.gene50620	-0.801806	7.57E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50620.t1	MTR_1g070085	91.860	344	28	0	1	344	1	344	0.0	665
MS.gene50620.t1	MTR_1g070085	91.860	344	28	0	1	344	1	344	0.0	665
MS.gene50620.t1	MTR_1g070100	91.985	262	21	0	83	344	1	262	0.0	513
MS.gene50620.t1	MTR_1g070085	90.602	266	25	0	79	344	1	266	0.0	513
MS.gene50620.t1	MTR_1g070120	66.272	338	112	2	1	337	1	337	9.13e-177	494
MS.gene50620.t1	MTR_1g070135	66.077	339	113	2	1	338	1	338	7.23e-176	491
MS.gene50620.t1	MTR_1g070080	66.962	339	110	2	1	338	1	338	1.85e-175	490
MS.gene50620.t1	MTR_1g070135	67.050	261	84	2	1	260	1	260	5.23e-133	380
MS.gene50620.t1	MTR_1g070110	58.555	263	79	1	76	338	1	233	3.39e-111	323
MS.gene50620.t1	MTR_6g015950	47.041	338	172	5	2	336	3	336	8.18e-104	308

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50620.t1	AT5G24530	40.118	339	195	4	3	337	4	338	2.98e-79	246
MS.gene50620.t1	AT4G10490	36.036	333	209	3	9	338	13	344	7.21e-73	229
MS.gene50620.t1	AT4G10500	36.000	325	205	3	4	326	10	333	8.22e-72	227
MS.gene50620.t1	AT2G36690	34.169	319	202	4	9	320	27	344	2.71e-57	190
MS.gene50620.t1	AT2G36690	34.169	319	202	4	9	320	27	344	2.71e-57	190
MS.gene50620.t1	AT1G55290	33.841	328	206	5	7	329	30	351	1.18e-56	188
MS.gene50620.t1	AT5G07480	31.611	329	211	6	6	325	16	339	2.28e-56	187
MS.gene50620.t1	AT2G44800	33.544	316	204	5	9	320	22	335	1.61e-55	185
MS.gene50620.t1	AT3G21420	37.884	293	169	7	33	316	51	339	2.92e-55	184
MS.gene50620.t1	AT3G55970	35.030	334	199	9	9	328	20	349	3.07e-55	184

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Find 86 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGGATCAGGGCATGG+TGG	0.687333	1.2:+53429720	None:intergenic
AAATTAAGGAGTTGGGTTCA+AGG	0.470502	1.2:-53429839	MS.gene50620:CDS
AAATTCCCTGGTCTTGTTTC+TGG	0.072157	1.2:+53433554	None:intergenic
AAGAGGAACCAAAGGATTAA+AGG	0.321991	1.2:-53429057	None:intergenic
AAGCATCAAATCTGTGCCTG+AGG	0.610221	1.2:-53433591	MS.gene50620:CDS
AAGTACTTAAGGATGGAGAG+TGG	0.626132	1.2:-53429623	MS.gene50620:CDS
AAGTCGTGCTTGTATTCATT+AGG	0.392651	1.2:+53431773	None:intergenic
AAGTGTTGCCACTGCACCAA+AGG	0.573991	1.2:+53431644	None:intergenic
AATTTGATAAGGTTCATCTA+TGG	0.419802	1.2:-53431694	MS.gene50620:CDS
AATTTGATTAGTGAAGGGCT+GGG	0.612586	1.2:-53429810	MS.gene50620:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGGACCAAAATGTGTA+AGG	+	chr1.2:53429397-53429416	None:intergenic	30.0%
AAAGTGATGCTTGTTTGAAA+TGG	-	chr1.2:53432685-53432704	MS.gene50620:intron	30.0%
AATGTTTAAACAATGCCCTT+AGG	+	chr1.2:53431554-53431573	None:intergenic	30.0%
ACATGATATCTGTAGTTTCA+AGG	+	chr1.2:53430224-53430243	None:intergenic	30.0%
ACTAAGATCAATTATTGGGA+TGG	+	chr1.2:53429169-53429188	None:intergenic	30.0%
AGCAAGACCCATAAAATAAA+GGG	-	chr1.2:53431697-53431716	MS.gene50620:CDS	30.0%
ATAAGGAAAATGCTAACAAG+TGG	-	chr1.2:53431528-53431547	MS.gene50620:intron	30.0%
ATCTTAGTGAAGCACAAAAT+GGG	-	chr1.2:53429181-53429200	MS.gene50620:CDS	30.0%
ATGATATGAAGATGAAGAAG+AGG	+	chr1.2:53429464-53429483	None:intergenic	30.0%
ATTGCTAGTATTAATCAGAG+AGG	+	chr1.2:53431193-53431212	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	53429060	53433639	53429060	ID=MS.gene50620
chr1.2	mRNA	53429060	53433639	53429060	ID=MS.gene50620.t1;Parent=MS.gene50620
chr1.2	exon	53433436	53433639	53433436	ID=MS.gene50620.t1.exon1;Parent=MS.gene50620.t1
chr1.2	CDS	53433436	53433639	53433436	ID=cds.MS.gene50620.t1;Parent=MS.gene50620.t1
chr1.2	exon	53431617	53431867	53431617	ID=MS.gene50620.t1.exon2;Parent=MS.gene50620.t1
chr1.2	CDS	53431617	53431867	53431617	ID=cds.MS.gene50620.t1;Parent=MS.gene50620.t1
chr1.2	exon	53429566	53429887	53429566	ID=MS.gene50620.t1.exon3;Parent=MS.gene50620.t1
chr1.2	CDS	53429566	53429887	53429566	ID=cds.MS.gene50620.t1;Parent=MS.gene50620.t1
chr1.2	exon	53429060	53429317	53429060	ID=MS.gene50620.t1.exon4;Parent=MS.gene50620.t1
chr1.2	CDS	53429060	53429317	53429060	ID=cds.MS.gene50620.t1;Parent=MS.gene50620.t1

Gene Sequence

>MS.gene50620

ATGGAGAAATTTATTTCAAACCGGTCAAGCATCAAATCTGTGCCTGAGGACTATGTATTCCCACCAGAAACAAGACCAGGGAATTTCAAAATCCCAATCAACAAAACCATCCCAATAATTGATCTTAGTGAAGCACAAAATGGGGATAGAACCAAATCAATTCAGCAAATTATCAAGGCTGCTGAGGAGTTTGGATTCTTTCAGGTATTCATACTAAATTTTTTGTTTTTCATTTTAAGATTAAATATATATATTTTCCCGCTAAATATAGGCTAAATTGCATTTTTGGTCCCTTAATTAAAATTTGATTTATTTTGGTATCTTAACTCTCTTTCCTTACACATTTTGGTCCTTTTTGTTAGTTTTAATTTAAAAACGTTACGTTTTCTTCATCTTCTTCTCCTCTTCTTCATCTTCATATCATATCCATCGACTTTCAACAGCAAAAATCCAAGAAAAATTCCAAAAGAAAATAAAGAAAACCTAATGTTTTTGAATTAAAACTAACGGAAAGGACCAAAATGTGTAACGGAGAGAAGTTAAGATACCAAAATAAATCAAATTTTAATTAAGGGACCAAAACGATACTAATTAAATAGTTAAGGGACCAAAAACATAATTTAGCCCTAAATATACTAAGCAACACAGGGCGTTGCTAGGACCCTAGATCAGGGTTCAAAATTTCAAACTACCAAATTTTTATCTTGAATGTGTATTTCGCTATCATATTAATCTTTGAATGTATCAAAATTGTAACTACATTCACAAATGTCTCTTTTAGTAATCATTTTGATCATCAAATTAGTTTTTAGATAGTCAATTTTATCTTAGAATATGTTTTGTCATTGTTCAATTTAATCTATAAAATTACACAAAAAAAGATGCACTATATAAATATGTTTACAATTTCAATACATTTAAAGAGTACAGTAAAAGTGTCTTACACATTCATGGATCAACATATTTGTTTGCCTATTTAGAGACAATAGAAAAGTTAAATATTTAAAGATAAATGTCGTAAAATTATAAATATTAAAATATATTTATATTTTTTTAAGAAAAATTTCCACATCTTACATTTTTTTTCCATCATAGAATATTTATCAGTTAAAATTTGAAAACACAATGCTAAATATCTTATACATTTTCTATGCTAACTATCCTTGAAACTACAGATATCATGTTCGTTATTATAGCCAGATTTAATTTCCATTCAAGGTATTTTGTTTTGATTCCAATCTATCATCAATTTATAATATAAAATGATATTTTTTACTTTGACTTAAACTTTGGGCAATCTGCATTGTATTACTGTCACAGTGTGTGCCCAGACACAACTTTGCCAACTTTTTCCTAGTAAGAGAGGAGAGAGTCAATGCAATATGGTGCAAGGCCTAATTTTGAGGGCAGGGCCGTATCTGGGGTAGGGCGAAGAGGGCGACCGTCCTAGGCCCTAAAAAATAAGTGTGAAATTTGAGCCCCAAATTTTTCTTTTTAGAGGTCTATTATGCCTTAAAAATATGCTTAATTTTTTGTATCAAGTTTGATGTTTATATATATTTATTAGTTGGGACCTAAATTGTAGGTTCGTCCCAGACCACTAAAATCTCAAAAACGGCCCTGTTTGAGGGGGGTTCAAGACAATGAACATATAATAAAATAGGTGTAAATTTGAAAAGTTGAGAACGTGCGATTGAACCCCCTGGCCATTATATATATGGCTCCGCCAATGTGTCTAATATAAATCCCGACATTTTTTTTTATTAAAATAGGTTATCAATCATGGTCTCTCGTTGGATGAAATGAAGGAAACAATGAGTGTTTTTAAGGAGGTGTTTGAGAAGCCTAATGAATACAAGCACGACTTGTATCCTGAGGACAATTTGAAGACATGTAAGATGTTTTCTAGCACTTTCAAATATGAATTTGATAAGGTTCATCTATGGAGGGACACTCTTAGACACCCAGCTTATCCTTTGGTGCAGTGGCAACACTTGTGGCCTGAATATCCAACTACATACAGGTAAATGCATGAAAACATTGATTATTACTTGAGAATACCAATTCAACATATATTAACAAGTCTTTAACTTAATTAAATAGTCGACATAACAATTTCACTACATGCAACCTCTCTGATTAATACTAGCAATTGTTCAATGAATATAAAAGATAAAGTTTTGTTTATAATAGTGATTGAACGGAGTATATTAGTTTAGTTACGGGGACGGATCGAGACATAATGTTTAGGTGTGGCTGAATTATGAAAGAAACTATGAACTAAATCATCCTCCCTTTGTTCCTAATTATAAGGCCCATTTTGGAAAAATAATAGGAATTAAGAAAATTGAAAGTGATAATAAGTTTGTTTGTAATTGCTATTGTTTTTACAATTTTATCCTTTAAGAGAGAGTGTTAGTGTATGTTTCAACATAGTATTTAATGTTGATTGAAGAAAAAGATATAAAATAAGGAAAATGCTAACAAGTGGCCTAAGGGCATTGTTTAAACATTTAAAAGTAGCAAATTTTGCATTGGAAATTGTACGATTATAACTTTAACAAGTGTTTGACTTGTATTTTCAAGACATAATTTCCTTTTGTGGGTTCCTTAAACAATGCCCTTAGGGCACTTGTTAGCAAGACCCATAAAATAAAGGGTCTTGCTAACCAGTGCCCTCAGGGCAATGGTTAAGGAAACCAAAAGTAGTATATTTACATTGAATTCAACAATATTTTGACTTTTAAAAAGTTAAATTCTTCACTTGTCATCATTTTCCAATGCAATGTTTCTATTTTTATCATCTTAGCCAATGCCCCAAGGGCACTATTTAGCATTTCCCTAAAATAAATAAGAGTGTGTTGGTAAAGAATTAATTAATGTACTTGAAAATACCAAAATGGTCTTATAAAAAGAGACAAAAAATTTCTCAAAAGGGTCTTATATTTAGTGACGGAGGTAATACTAAAAATGCAGGAAAACGAGCACGATGGGAGTGAAACCAGGTCGCGCGTATTGATATAAGCAACCCATACATACCGATAGACCATATAAAGAATCTTCACATAATTTAGACATATATAGTATATAACGGTTATAACCAATTGTTTGAGACCTAGTATATGAAAGAAAAAGGAAAAAAAAGAGGGTATAATCATGTGTGGCTAGCCACACATAACCCTATCGTGGATCCACCCCTGATTAGTTAGATCAGTAAATTTATTAGTATATGCCCCAATTAAGATAAGTATAAGCTTGCTCACATTAGAATGTTTAGTAATTCATGAATTGTCATATTCTCTCTGAGCTTAATTATAAGACAATTTTAAAATTTTGTATGTCCATAATTATAAAACCCTCAACAAATTTTTAAATACATTTTTATATTCAGTTTCCAAATATTAATGCTATGGTTAAATATGTTTTTATCTCTAAAAATATATCAACTTTGTGTTTTAATCCCTCTAAAAAATTTCTTCAACTTTTGGTCTCCTAAAAAATTTCCATTACCATTTTTGGTCACTACCTTTAAGTCAACTCTTGTGTAACCTTCATATTTGTAAATGAAATTTTCATTAAAAAATATGAAGGCTACACACATGAGTTGACTCAAAAGTATAGACTAAAAGTGATGCTTGTTTGAAATGGATGATGGTTTGATTTGATTGTTTTACTAAATTTTTGATGGATTATAAATAGATTGATGGGTTCTTCAATCCATCCAATAAATATATATATATTTTTTCTTGCAGAGAGTGTGTTGGGGATTATTCAACTAAAATTAAGGAGTTGGGTTCAAGGATCATGAATTTGATTAGTGAAGGGCTGGGTTTGGAGTGTGGATATTTCGACAATGATAATCTTAGTGATTCATTGGTTATCCAACTTAATCATTATCCACCATGCCCTGATCCAAGTTTAACACTTGGTATAACCAAACACTTTGATGCTTACCTCATCACCGTTTTACAACAAGAAGATATATGTGGGCTTCAAGTACTTAAGGATGGAGAGTGGATTGCTGTTGATGCTATTCCTCATGCATTTGTTATCAACATAGGCTACGCCTTGCAGGTACACTTAATGCATTTATCATCACTTACTATCATTTTAATTCTTTAAATTATGTGGGAAAAGAACTATCTTGCTGACCATTTTGTAGATTTGAGAACTTTGAAATATTAATAACCCTATAGGGACTAATTTATTACTATCTCATGAAGGAAAATTTTTGTATTTTTTCATTTCAATCATGGCTCTTAATAATTTATGTAAATTGGCAAATTTTGTTGACTTGTGATGGATTACAATATTGGATACAGATAATCACTAATGGAAAGCTAAAAAGTGTGGAACATAGAGTTGTGACAAATTCAGAACAAGCTCGCACAACTGCTGCCTTTTTTATAGCTCCATCAGGTGATTGTTTCATTGAACCAACAAAAGATCTCATTGATGACCACAATCCACCTATTTATAAGTCTTACAAATACAAGGAGTTGCTCACTCGCTTCTTTAAGAAACATGGTGACATGGATATGGTGCTGAAATCCTATGAGGAAGAGGAACCAAAGGATTAA

Protein sequence

>MS.gene50620.t1

MEKFISNRSSIKSVPEDYVFPPETRPGNFKIPINKTIPIIDLSEAQNGDRTKSIQQIIKAAEEFGFFQVINHGLSLDEMKETMSVFKEVFEKPNEYKHDLYPEDNLKTCKMFSSTFKYEFDKVHLWRDTLRHPAYPLVQWQHLWPEYPTTYRECVGDYSTKIKELGSRIMNLISEGLGLECGYFDNDNLSDSLVIQLNHYPPCPDPSLTLGITKHFDAYLITVLQQEDICGLQVLKDGEWIAVDAIPHAFVINIGYALQIITNGKLKSVEHRVVTNSEQARTTAAFFIAPSGDCFIEPTKDLIDDHNPPIYKSYKYKELLTRFFKKHGDMDMVLKSYEEEEPKD