Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068166.t1 | XP_003612227.1 | 98.7 | 154 | 2 | 0 | 3 | 156 | 2 | 155 | 1.40E-77 | 298.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068166.t1 | Q39255 | 78.0 | 159 | 29 | 1 | 4 | 156 | 2 | 160 | 6.1e-66 | 251.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068166.t1 | Q155U2 | 98.7 | 154 | 2 | 0 | 3 | 156 | 2 | 155 | 9.9e-78 | 298.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene068166 | -0.829504 | 4.96E-55 | -1.69E-46 |
| MS.gene049255 | MS.gene068166 | 0.819531 | 1.11E-52 | -1.69E-46 |
| MS.gene049368 | MS.gene068166 | 0.808575 | 2.89E-50 | -1.69E-46 |
| MS.gene049411 | MS.gene068166 | 0.810608 | 1.06E-50 | -1.69E-46 |
| MS.gene049653 | MS.gene068166 | 0.8317 | 1.44E-55 | -1.69E-46 |
| MS.gene049674 | MS.gene068166 | 0.808055 | 3.74E-50 | -1.69E-46 |
| MS.gene049951 | MS.gene068166 | 0.812241 | 4.68E-51 | -1.69E-46 |
| MS.gene050084 | MS.gene068166 | 0.804055 | 2.60E-49 | -1.69E-46 |
| MS.gene050085 | MS.gene068166 | 0.839541 | 1.49E-57 | -1.69E-46 |
| MS.gene050277 | MS.gene068166 | 0.831266 | 1.84E-55 | -1.69E-46 |
| MS.gene050288 | MS.gene068166 | 0.809338 | 1.99E-50 | -1.69E-46 |
| MS.gene050317 | MS.gene068166 | 0.815245 | 1.02E-51 | -1.69E-46 |
| MS.gene050320 | MS.gene068166 | 0.860371 | 2.16E-63 | -1.69E-46 |
| MS.gene050384 | MS.gene068166 | 0.832413 | 9.59E-56 | -1.69E-46 |
| MS.gene050386 | MS.gene068166 | 0.83913 | 1.91E-57 | -1.69E-46 |
| MS.gene050437 | MS.gene068166 | 0.864979 | 8.23E-65 | -1.69E-46 |
| MS.gene050646 | MS.gene068166 | 0.814874 | 1.23E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene068166 | 0.850377 | 1.77E-60 | -1.69E-46 |
| MS.gene050752 | MS.gene068166 | 0.89651 | 3.44E-76 | -1.69E-46 |
| MS.gene050838 | MS.gene068166 | 0.842496 | 2.50E-58 | -1.69E-46 |
| MS.gene050945 | MS.gene068166 | 0.8185 | 1.90E-52 | -1.69E-46 |
| MS.gene050955 | MS.gene068166 | 0.869957 | 2.10E-66 | -1.69E-46 |
| MS.gene051003 | MS.gene068166 | 0.86053 | 1.94E-63 | -1.69E-46 |
| MS.gene051233 | MS.gene068166 | 0.814773 | 1.30E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene068166 | 0.848621 | 5.45E-60 | -1.69E-46 |
| MS.gene051245 | MS.gene068166 | 0.826103 | 3.26E-54 | -1.69E-46 |
| MS.gene051343 | MS.gene068166 | 0.86138 | 1.07E-63 | -1.69E-46 |
| MS.gene05134 | MS.gene068166 | 0.831881 | 1.30E-55 | -1.69E-46 |
| MS.gene051642 | MS.gene068166 | 0.810884 | 9.23E-51 | -1.69E-46 |
| MS.gene051676 | MS.gene068166 | 0.817648 | 2.96E-52 | -1.69E-46 |
| MS.gene051746 | MS.gene068166 | 0.801464 | 8.89E-49 | -1.69E-46 |
| MS.gene051748 | MS.gene068166 | 0.828236 | 1.01E-54 | -1.69E-46 |
| MS.gene051756 | MS.gene068166 | 0.825685 | 4.10E-54 | -1.69E-46 |
| MS.gene051757 | MS.gene068166 | 0.800265 | 1.56E-48 | -1.69E-46 |
| MS.gene051856 | MS.gene068166 | 0.808665 | 2.77E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene068166 | 0.806602 | 7.59E-50 | -1.69E-46 |
| MS.gene051902 | MS.gene068166 | 0.830436 | 2.94E-55 | -1.69E-46 |
| MS.gene051903 | MS.gene068166 | 0.838945 | 2.13E-57 | -1.69E-46 |
| MS.gene051975 | MS.gene068166 | 0.867812 | 1.04E-65 | -1.69E-46 |
| MS.gene052072 | MS.gene068166 | 0.869702 | 2.54E-66 | -1.69E-46 |
| MS.gene052242 | MS.gene068166 | -0.815666 | 8.23E-52 | -1.69E-46 |
| MS.gene052286 | MS.gene068166 | 0.811212 | 7.84E-51 | -1.69E-46 |
| MS.gene052342 | MS.gene068166 | 0.803153 | 3.99E-49 | -1.69E-46 |
| MS.gene052370 | MS.gene068166 | 0.818707 | 1.70E-52 | -1.69E-46 |
| MS.gene052434 | MS.gene068166 | 0.812876 | 3.40E-51 | -1.69E-46 |
| MS.gene052527 | MS.gene068166 | 0.805207 | 1.49E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene068166 | 0.817433 | 3.31E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene068166 | 0.85364 | 2.09E-61 | -1.69E-46 |
| MS.gene053109 | MS.gene068166 | 0.839024 | 2.03E-57 | -1.69E-46 |
| MS.gene053564 | MS.gene068166 | 0.833852 | 4.20E-56 | -1.69E-46 |
| MS.gene053590 | MS.gene068166 | 0.821326 | 4.29E-53 | -1.69E-46 |
| MS.gene05364 | MS.gene068166 | 0.809296 | 2.03E-50 | -1.69E-46 |
| MS.gene053931 | MS.gene068166 | 0.804649 | 1.95E-49 | -1.69E-46 |
| MS.gene053952 | MS.gene068166 | 0.812392 | 4.34E-51 | -1.69E-46 |
| MS.gene054004 | MS.gene068166 | 0.827948 | 1.18E-54 | -1.69E-46 |
| MS.gene054403 | MS.gene068166 | 0.894333 | 2.72E-75 | -1.69E-46 |
| MS.gene054536 | MS.gene068166 | 0.80034 | 1.51E-48 | -1.69E-46 |
| MS.gene05469 | MS.gene068166 | 0.86897 | 4.39E-66 | -1.69E-46 |
| MS.gene05517 | MS.gene068166 | 0.804906 | 1.73E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene068166 | 0.838426 | 2.90E-57 | -1.69E-46 |
| MS.gene055313 | MS.gene068166 | 0.818875 | 1.56E-52 | -1.69E-46 |
| MS.gene055314 | MS.gene068166 | 0.821648 | 3.61E-53 | -1.69E-46 |
| MS.gene055623 | MS.gene068166 | 0.808873 | 2.50E-50 | -1.69E-46 |
| MS.gene056097 | MS.gene068166 | 0.803267 | 3.78E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene068166 | 0.841901 | 3.59E-58 | -1.69E-46 |
| MS.gene056631 | MS.gene068166 | 0.824087 | 9.76E-54 | -1.69E-46 |
| MS.gene056699 | MS.gene068166 | 0.814961 | 1.18E-51 | -1.69E-46 |
| MS.gene056760 | MS.gene068166 | 0.801347 | 9.40E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene068166 | 0.84698 | 1.54E-59 | -1.69E-46 |
| MS.gene056986 | MS.gene068166 | 0.857213 | 1.90E-62 | -1.69E-46 |
| MS.gene057094 | MS.gene068166 | 0.805183 | 1.51E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene068166 | 0.823627 | 1.25E-53 | -1.69E-46 |
| MS.gene057108 | MS.gene068166 | 0.815637 | 8.35E-52 | -1.69E-46 |
| MS.gene057109 | MS.gene068166 | 0.816216 | 6.20E-52 | -1.69E-46 |
| MS.gene057110 | MS.gene068166 | 0.812113 | 4.99E-51 | -1.69E-46 |
| MS.gene057234 | MS.gene068166 | 0.849472 | 3.16E-60 | -1.69E-46 |
| MS.gene057392 | MS.gene068166 | 0.811472 | 6.88E-51 | -1.69E-46 |
| MS.gene057694 | MS.gene068166 | 0.808821 | 2.56E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene068166 | 0.833419 | 5.39E-56 | -1.69E-46 |
| MS.gene05781 | MS.gene068166 | 0.827915 | 1.20E-54 | -1.69E-46 |
| MS.gene057890 | MS.gene068166 | -0.817621 | 3.00E-52 | -1.69E-46 |
| MS.gene057999 | MS.gene068166 | 0.866575 | 2.58E-65 | -1.69E-46 |
| MS.gene058054 | MS.gene068166 | 0.824401 | 8.23E-54 | -1.69E-46 |
| MS.gene058055 | MS.gene068166 | 0.836359 | 9.80E-57 | -1.69E-46 |
| MS.gene058074 | MS.gene068166 | 0.800887 | 1.17E-48 | -1.69E-46 |
| MS.gene058238 | MS.gene068166 | 0.838121 | 3.47E-57 | -1.69E-46 |
| MS.gene058261 | MS.gene068166 | 0.812591 | 3.93E-51 | -1.69E-46 |
| MS.gene058654 | MS.gene068166 | 0.801848 | 7.42E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene068166 | 0.800068 | 1.71E-48 | -1.69E-46 |
| MS.gene058976 | MS.gene068166 | 0.819031 | 1.44E-52 | -1.69E-46 |
| MS.gene059146 | MS.gene068166 | 0.850778 | 1.36E-60 | -1.69E-46 |
| MS.gene059171 | MS.gene068166 | 0.803692 | 3.09E-49 | -1.69E-46 |
| MS.gene059227 | MS.gene068166 | 0.805125 | 1.55E-49 | -1.69E-46 |
| MS.gene059360 | MS.gene068166 | 0.823114 | 1.65E-53 | -1.69E-46 |
| MS.gene059590 | MS.gene068166 | 0.804741 | 1.87E-49 | -1.69E-46 |
| MS.gene05978 | MS.gene068166 | 0.81332 | 2.72E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene068166 | 0.808637 | 2.81E-50 | -1.69E-46 |
| MS.gene06010 | MS.gene068166 | 0.811362 | 7.27E-51 | -1.69E-46 |
| MS.gene06011 | MS.gene068166 | 0.839895 | 1.20E-57 | -1.69E-46 |
| MS.gene060244 | MS.gene068166 | 0.826297 | 2.93E-54 | -1.69E-46 |
| MS.gene060365 | MS.gene068166 | 0.800632 | 1.32E-48 | -1.69E-46 |
| MS.gene060702 | MS.gene068166 | 0.806809 | 6.87E-50 | -1.69E-46 |
| MS.gene060763 | MS.gene068166 | 0.819093 | 1.39E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene068166 | 0.808073 | 3.71E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene068166 | 0.808448 | 3.08E-50 | -1.69E-46 |
| MS.gene061145 | MS.gene068166 | 0.814938 | 1.19E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047254 | MS.gene068166 | PPI |
| MS.gene068166 | MS.gene33667 | PPI |
| MS.gene79719 | MS.gene068166 | PPI |
| MS.gene004511 | MS.gene068166 | PPI |
| MS.gene25471 | MS.gene068166 | PPI |
| MS.gene34691 | MS.gene068166 | PPI |
| MS.gene00939 | MS.gene068166 | PPI |
| MS.gene055864 | MS.gene068166 | PPI |
| MS.gene33411 | MS.gene068166 | PPI |
| MS.gene59610 | MS.gene068166 | PPI |
| MS.gene068281 | MS.gene068166 | PPI |
| MS.gene92141 | MS.gene068166 | PPI |
| MS.gene79720 | MS.gene068166 | PPI |
| MS.gene98172 | MS.gene068166 | PPI |
| MS.gene35971 | MS.gene068166 | PPI |
| MS.gene002824 | MS.gene068166 | PPI |
| MS.gene25469 | MS.gene068166 | PPI |
| MS.gene24959 | MS.gene068166 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068166.t1 | MTR_5g022730 | 98.701 | 154 | 2 | 0 | 3 | 156 | 2 | 155 | 4.44e-111 | 312 |
| MS.gene068166.t1 | MTR_5g022710 | 95.455 | 154 | 7 | 0 | 3 | 156 | 2 | 155 | 4.68e-100 | 284 |
| MS.gene068166.t1 | MTR_7g021400 | 86.538 | 156 | 21 | 0 | 1 | 156 | 1 | 156 | 2.45e-92 | 265 |
| MS.gene068166.t1 | MTR_7g094150 | 85.897 | 156 | 22 | 0 | 1 | 156 | 1 | 156 | 8.84e-91 | 261 |
| MS.gene068166.t1 | MTR_7g094170 | 84.615 | 156 | 24 | 0 | 1 | 156 | 1 | 156 | 2.10e-89 | 257 |
| MS.gene068166.t1 | MTR_7g021380 | 82.692 | 156 | 27 | 0 | 1 | 156 | 1 | 156 | 2.01e-85 | 247 |
| MS.gene068166.t1 | MTR_4g032400 | 78.205 | 156 | 33 | 1 | 2 | 156 | 8 | 163 | 4.92e-85 | 246 |
| MS.gene068166.t1 | MTR_3g110048 | 75.949 | 158 | 36 | 1 | 1 | 156 | 1 | 158 | 6.04e-85 | 246 |
| MS.gene068166.t1 | MTR_7g094120 | 74.522 | 157 | 38 | 1 | 2 | 156 | 3 | 159 | 2.04e-83 | 242 |
| MS.gene068166.t1 | MTR_4g032450 | 73.248 | 157 | 41 | 1 | 1 | 156 | 19 | 175 | 2.74e-83 | 243 |
| MS.gene068166.t1 | MTR_7g094280 | 72.785 | 158 | 41 | 2 | 1 | 156 | 1 | 158 | 1.88e-79 | 232 |
| MS.gene068166.t1 | MTR_8g056060 | 73.248 | 157 | 41 | 1 | 1 | 156 | 1 | 157 | 5.95e-79 | 231 |
| MS.gene068166.t1 | MTR_5g085030 | 72.727 | 154 | 41 | 1 | 3 | 155 | 2 | 155 | 3.87e-78 | 229 |
| MS.gene068166.t1 | MTR_8g468480 | 70.323 | 155 | 45 | 1 | 3 | 156 | 2 | 156 | 9.72e-77 | 225 |
| MS.gene068166.t1 | MTR_7g094310 | 69.620 | 158 | 36 | 3 | 1 | 156 | 1 | 148 | 6.63e-72 | 213 |
| MS.gene068166.t1 | MTR_4g032510 | 68.153 | 157 | 42 | 3 | 2 | 156 | 3 | 153 | 1.32e-70 | 209 |
| MS.gene068166.t1 | MTR_4g032460 | 71.613 | 155 | 37 | 2 | 3 | 156 | 2 | 150 | 8.60e-70 | 207 |
| MS.gene068166.t1 | MTR_4g032500 | 66.026 | 156 | 46 | 2 | 2 | 156 | 3 | 152 | 3.24e-69 | 206 |
| MS.gene068166.t1 | MTR_4g033455 | 59.740 | 154 | 62 | 0 | 3 | 156 | 7 | 160 | 2.17e-64 | 194 |
| MS.gene068166.t1 | MTR_5g082340 | 65.806 | 155 | 41 | 2 | 3 | 156 | 2 | 145 | 1.58e-63 | 191 |
| MS.gene068166.t1 | MTR_4g017860 | 54.359 | 195 | 46 | 3 | 5 | 156 | 26 | 220 | 5.31e-63 | 193 |
| MS.gene068166.t1 | MTR_1g099870 | 84.314 | 102 | 14 | 1 | 57 | 156 | 2 | 103 | 9.38e-59 | 178 |
| MS.gene068166.t1 | MTR_4g021390 | 58.065 | 155 | 62 | 1 | 2 | 156 | 4 | 155 | 4.07e-58 | 178 |
| MS.gene068166.t1 | MTR_4g033460 | 59.286 | 140 | 57 | 0 | 3 | 142 | 7 | 146 | 8.85e-58 | 181 |
| MS.gene068166.t1 | MTR_4g033460 | 59.140 | 93 | 30 | 1 | 41 | 133 | 161 | 245 | 5.68e-30 | 109 |
| MS.gene068166.t1 | MTR_8g089730 | 69.106 | 123 | 21 | 1 | 34 | 156 | 1 | 106 | 1.44e-49 | 155 |
| MS.gene068166.t1 | MTR_7g094320 | 56.688 | 157 | 27 | 2 | 1 | 156 | 1 | 117 | 3.27e-49 | 154 |
| MS.gene068166.t1 | MTR_4g032420 | 61.417 | 127 | 34 | 3 | 31 | 156 | 38 | 150 | 7.69e-47 | 149 |
| MS.gene068166.t1 | MTR_7g006370 | 53.901 | 141 | 56 | 2 | 2 | 142 | 4 | 135 | 3.19e-43 | 140 |
| MS.gene068166.t1 | MTR_4g032470 | 50.685 | 146 | 28 | 2 | 12 | 156 | 32 | 134 | 4.89e-43 | 139 |
| MS.gene068166.t1 | MTR_7g094410 | 53.205 | 156 | 31 | 4 | 1 | 114 | 1 | 156 | 4.38e-41 | 135 |
| MS.gene068166.t1 | MTR_4g131980 | 63.866 | 119 | 37 | 3 | 3 | 119 | 2 | 116 | 3.53e-40 | 132 |
| MS.gene068166.t1 | MTR_4g127240 | 66.019 | 103 | 29 | 4 | 40 | 140 | 26 | 124 | 9.23e-40 | 130 |
| MS.gene068166.t1 | MTR_7g094360 | 47.093 | 172 | 38 | 4 | 1 | 119 | 1 | 172 | 1.18e-39 | 133 |
| MS.gene068166.t1 | MTR_8g056090 | 48.718 | 156 | 47 | 6 | 1 | 154 | 1 | 125 | 1.34e-36 | 123 |
| MS.gene068166.t1 | MTR_4g119422 | 48.299 | 147 | 69 | 2 | 2 | 146 | 227 | 368 | 1.00e-34 | 124 |
| MS.gene068166.t1 | MTR_1g112590 | 39.355 | 155 | 78 | 2 | 8 | 146 | 1 | 155 | 9.71e-33 | 114 |
| MS.gene068166.t1 | MTR_7g071200 | 69.565 | 69 | 20 | 1 | 89 | 156 | 4 | 72 | 5.35e-28 | 99.4 |
| MS.gene068166.t1 | MTR_2g066010 | 41.722 | 151 | 76 | 5 | 8 | 155 | 20 | 161 | 3.19e-27 | 100 |
| MS.gene068166.t1 | MTR_4g032520 | 43.750 | 144 | 39 | 4 | 29 | 154 | 1 | 120 | 2.47e-26 | 97.1 |
| MS.gene068166.t1 | MTR_2g065720 | 39.873 | 158 | 83 | 5 | 1 | 155 | 30 | 178 | 3.27e-26 | 98.6 |
| MS.gene068166.t1 | MTR_7g094350 | 56.522 | 92 | 27 | 1 | 1 | 92 | 1 | 79 | 7.45e-25 | 95.1 |
| MS.gene068166.t1 | MTR_7g094350 | 51.685 | 89 | 39 | 3 | 48 | 135 | 102 | 187 | 8.53e-20 | 82.0 |
| MS.gene068166.t1 | MTR_5g096950 | 37.107 | 159 | 79 | 4 | 1 | 155 | 1 | 142 | 6.64e-23 | 88.6 |
| MS.gene068166.t1 | MTR_4g032540 | 65.079 | 63 | 21 | 1 | 90 | 151 | 70 | 132 | 8.37e-23 | 87.8 |
| MS.gene068166.t1 | MTR_1g042510 | 34.615 | 156 | 64 | 4 | 8 | 146 | 1 | 135 | 2.28e-22 | 90.5 |
| MS.gene068166.t1 | MTR_2g018980 | 34.000 | 150 | 86 | 3 | 8 | 156 | 3 | 140 | 1.17e-21 | 85.5 |
| MS.gene068166.t1 | MTR_1g112570 | 36.691 | 139 | 63 | 4 | 8 | 128 | 1 | 132 | 6.50e-21 | 86.7 |
| MS.gene068166.t1 | MTR_5g078680 | 32.051 | 156 | 68 | 3 | 8 | 146 | 1 | 135 | 1.18e-19 | 82.8 |
| MS.gene068166.t1 | MTR_6g053620 | 36.806 | 144 | 81 | 5 | 8 | 146 | 17 | 155 | 4.78e-19 | 82.4 |
| MS.gene068166.t1 | MTR_6g053620 | 36.806 | 144 | 81 | 5 | 8 | 146 | 17 | 155 | 5.25e-19 | 82.4 |
| MS.gene068166.t1 | MTR_8g007195 | 34.286 | 140 | 80 | 4 | 10 | 143 | 13 | 146 | 2.91e-18 | 79.7 |
| MS.gene068166.t1 | MTR_7g077810 | 34.722 | 144 | 84 | 4 | 8 | 146 | 18 | 156 | 1.05e-17 | 78.6 |
| MS.gene068166.t1 | MTR_2g100825 | 32.667 | 150 | 92 | 4 | 1 | 146 | 4 | 148 | 6.23e-17 | 76.3 |
| MS.gene068166.t1 | MTR_8g007185 | 32.877 | 146 | 87 | 4 | 8 | 147 | 11 | 151 | 1.04e-16 | 75.5 |
| MS.gene068166.t1 | MTR_2g100830 | 33.793 | 145 | 80 | 5 | 10 | 146 | 13 | 149 | 1.10e-16 | 75.5 |
| MS.gene068166.t1 | MTR_8g007205 | 32.877 | 146 | 87 | 4 | 8 | 147 | 11 | 151 | 1.83e-16 | 74.7 |
| MS.gene068166.t1 | MTR_7g036780 | 33.333 | 141 | 83 | 6 | 1 | 135 | 1 | 136 | 5.22e-15 | 70.1 |
| MS.gene068166.t1 | MTR_4g131910 | 39.286 | 112 | 58 | 2 | 5 | 112 | 133 | 238 | 1.03e-14 | 69.3 |
| MS.gene068166.t1 | MTR_8g030670 | 30.345 | 145 | 91 | 3 | 10 | 149 | 20 | 159 | 2.79e-14 | 69.3 |
| MS.gene068166.t1 | MTR_3g061700 | 33.684 | 95 | 56 | 2 | 53 | 146 | 1 | 89 | 2.99e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068166.t1 | AT5G42190 | 77.059 | 170 | 23 | 1 | 3 | 156 | 2 | 171 | 2.93e-85 | 247 |
| MS.gene068166.t1 | AT1G75950 | 78.616 | 159 | 28 | 1 | 4 | 156 | 2 | 160 | 4.97e-84 | 244 |
| MS.gene068166.t1 | AT1G20140 | 72.393 | 163 | 38 | 2 | 1 | 156 | 1 | 163 | 5.87e-83 | 241 |
| MS.gene068166.t1 | AT2G25700 | 68.712 | 163 | 44 | 2 | 1 | 156 | 1 | 163 | 2.38e-78 | 229 |
| MS.gene068166.t1 | AT4G34210 | 69.481 | 154 | 43 | 2 | 4 | 156 | 2 | 152 | 8.33e-76 | 223 |
| MS.gene068166.t1 | AT4G34470 | 68.831 | 154 | 44 | 2 | 4 | 156 | 2 | 152 | 4.41e-75 | 221 |
| MS.gene068166.t1 | AT3G21860 | 66.452 | 155 | 46 | 3 | 4 | 156 | 2 | 152 | 2.48e-67 | 201 |
| MS.gene068166.t1 | AT3G60010 | 64.331 | 157 | 47 | 3 | 5 | 156 | 2 | 154 | 1.10e-66 | 200 |
| MS.gene068166.t1 | AT3G21850 | 63.871 | 155 | 51 | 3 | 4 | 156 | 2 | 153 | 3.22e-66 | 199 |
| MS.gene068166.t1 | AT2G03170 | 62.338 | 154 | 51 | 2 | 4 | 156 | 2 | 149 | 3.09e-63 | 191 |
| MS.gene068166.t1 | AT2G03190 | 55.422 | 166 | 61 | 3 | 4 | 156 | 2 | 167 | 6.00e-59 | 181 |
| MS.gene068166.t1 | AT3G60020 | 56.329 | 158 | 57 | 3 | 5 | 156 | 2 | 153 | 2.64e-56 | 174 |
| MS.gene068166.t1 | AT2G03160 | 48.677 | 189 | 61 | 3 | 4 | 156 | 2 | 190 | 1.49e-55 | 173 |
| MS.gene068166.t1 | AT3G21830 | 55.844 | 154 | 64 | 2 | 4 | 156 | 2 | 152 | 4.80e-55 | 170 |
| MS.gene068166.t1 | AT2G20160 | 54.902 | 153 | 63 | 2 | 4 | 155 | 2 | 149 | 2.69e-53 | 166 |
| MS.gene068166.t1 | AT3G25650 | 57.229 | 166 | 58 | 5 | 4 | 156 | 2 | 167 | 5.78e-53 | 166 |
| MS.gene068166.t1 | AT1G10230 | 56.774 | 155 | 64 | 2 | 4 | 155 | 2 | 156 | 6.60e-52 | 162 |
| MS.gene068166.t1 | AT3G21840 | 57.500 | 120 | 45 | 3 | 4 | 121 | 2 | 117 | 6.58e-37 | 123 |
| MS.gene068166.t1 | AT3G53060 | 65.116 | 86 | 23 | 3 | 29 | 113 | 1 | 80 | 3.15e-31 | 107 |
| MS.gene068166.t1 | AT3G61415 | 33.333 | 144 | 86 | 4 | 8 | 146 | 18 | 156 | 3.10e-16 | 74.7 |
| MS.gene068166.t1 | AT3G61415 | 33.333 | 144 | 86 | 4 | 8 | 146 | 18 | 156 | 3.39e-16 | 74.3 |
| MS.gene068166.t1 | AT2G45950 | 31.944 | 144 | 88 | 4 | 8 | 146 | 18 | 156 | 4.90e-16 | 73.9 |
| MS.gene068166.t1 | AT2G45950 | 31.944 | 144 | 88 | 4 | 8 | 146 | 18 | 156 | 4.90e-16 | 73.9 |
| MS.gene068166.t1 | AT2G45950 | 31.944 | 144 | 88 | 4 | 8 | 146 | 18 | 156 | 4.90e-16 | 73.9 |
| MS.gene068166.t1 | AT2G45950 | 31.944 | 144 | 88 | 4 | 8 | 146 | 18 | 156 | 5.02e-16 | 73.9 |
| MS.gene068166.t1 | AT2G45950 | 31.944 | 144 | 88 | 4 | 8 | 146 | 18 | 156 | 5.02e-16 | 73.9 |
Find 40 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGTCTTGCGAATCTCTTC+AGG | 0.314015 | 1.4:-37395055 | None:intergenic |
| GGTCGATGAAGCGGTTGCTT+TGG | 0.364221 | 1.4:+37393857 | MS.gene068166:CDS |
| GAAATCATTCTTAATGTTGA+AGG | 0.372420 | 1.4:-37395074 | None:intergenic |
| CAACGTTACCAGCAAGATCT+TGG | 0.386921 | 1.4:+37393941 | MS.gene068166:CDS |
| CGAGGATGAGCTTAAGTCTT+GGG | 0.409245 | 1.4:+37394025 | MS.gene068166:CDS |
| TGATCATGTCTGCCACAGTC+TGG | 0.431834 | 1.4:-37395021 | None:intergenic |
| CGAGTTCGTCAAGGTTGATC+AGG | 0.435035 | 1.4:+37394052 | MS.gene068166:CDS |
| CACCTTCGCCAAGATCTTGC+TGG | 0.436666 | 1.4:-37393949 | None:intergenic |
| GACTTAAGCTCATCCTCGTT+AGG | 0.455978 | 1.4:-37394020 | None:intergenic |
| TGATTTCTCTCCAGAGGAAG+AGG | 0.475889 | 1.4:+37395090 | MS.gene068166:CDS |
| AAGATCTTGCTGGTAACGTT+GGG | 0.477857 | 1.4:-37393939 | None:intergenic |
| TTTGAATATCAAGAACCTGC+TGG | 0.483519 | 1.4:+37394988 | MS.gene068166:CDS |
| CGAACTTCCTCCTCTTCCTC+TGG | 0.494352 | 1.4:-37395100 | None:intergenic |
| TGCTGGTAACGTTGGGAAGA+GGG | 0.508109 | 1.4:-37393932 | None:intergenic |
| TTGCTGGTAACGTTGGGAAG+AGG | 0.523250 | 1.4:-37393933 | None:intergenic |
| CAAGATCTTGCTGGTAACGT+TGG | 0.530853 | 1.4:-37393940 | None:intergenic |
| GGAAGAGGAGGAAGTTCGTA+GGG | 0.537389 | 1.4:+37395105 | MS.gene068166:CDS |
| ATAATCATTCAAATGCCCAT+TGG | 0.538622 | 1.4:-37395132 | None:intergenic |
| CTGATCAACCTTGACGAACT+CGG | 0.543997 | 1.4:-37394051 | None:intergenic |
| ACGAGGATGAGCTTAAGTCT+TGG | 0.544399 | 1.4:+37394024 | MS.gene068166:CDS |
| AGGAAGAGGAGGAAGTTCGT+AGG | 0.548370 | 1.4:+37395104 | MS.gene068166:CDS |
| GACTGTGGCAGACATGATCA+AGG | 0.557841 | 1.4:+37395024 | MS.gene068166:CDS |
| AGTTCGTAGGGAAAACCAAT+GGG | 0.562143 | 1.4:+37395117 | MS.gene068166:CDS |
| AAGTTCGTAGGGAAAACCAA+TGG | 0.564773 | 1.4:+37395116 | MS.gene068166:CDS |
| TTGGGATTCCGAGTTCGTCA+AGG | 0.598524 | 1.4:+37394043 | MS.gene068166:CDS |
| TAAGAATGATTTCTCTCCAG+AGG | 0.603350 | 1.4:+37395084 | MS.gene068166:CDS |
| GAAGATGATTGCGCTGACAG+TGG | 0.607194 | 1.4:+37393906 | MS.gene068166:CDS |
| GACCTTCGAGGTCGATGAAG+CGG | 0.610768 | 1.4:+37393848 | MS.gene068166:CDS |
| TTCCGACGGTGAGACCTTCG+AGG | 0.613590 | 1.4:+37393836 | MS.gene068166:CDS |
| TTTCTCTCCAGAGGAAGAGG+AGG | 0.615178 | 1.4:+37395093 | MS.gene068166:CDS |
| TCTGGCATGTAAGATCCAGC+AGG | 0.615709 | 1.4:-37395003 | None:intergenic |
| ATCACTCTGAAGAGTTCCGA+CGG | 0.622850 | 1.4:+37393822 | MS.gene068166:CDS |
| AACCGCTTCATCGACCTCGA+AGG | 0.623664 | 1.4:-37393850 | None:intergenic |
| ACTGTGGCAGACATGATCAA+GGG | 0.624146 | 1.4:+37395025 | MS.gene068166:CDS |
| TACCAGCAAGATCTTGGCGA+AGG | 0.627734 | 1.4:+37393947 | MS.gene068166:CDS |
| CTGTGGCAGACATGATCAAG+GGG | 0.638852 | 1.4:+37395026 | MS.gene068166:CDS |
| GACCTCGAAGGTCTCACCGT+CGG | 0.662584 | 1.4:-37393838 | None:intergenic |
| TTGCAAGAAGCATGTTGACG+CGG | 0.672838 | 1.4:+37393980 | MS.gene068166:CDS |
| GGATCTTACATGCCAGACTG+TGG | 0.675179 | 1.4:+37395009 | MS.gene068166:CDS |
| TGCTGAAGACAAACCTAACG+AGG | 0.677963 | 1.4:+37394007 | MS.gene068166:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTATTAATAAAAAAAT+AGG | - | chr1.4:37394239-37394258 | None:intergenic | 0.0% |
| !!! | TATTTTTTTATTAATAATAA+AGG | + | chr1.4:37394238-37394257 | MS.gene068166:intron | 0.0% |
| !! | TTATTAATAATAAAGGATTA+GGG | + | chr1.4:37394245-37394264 | MS.gene068166:intron | 10.0% |
| !! | TTTATTAATAATAAAGGATT+AGG | + | chr1.4:37394244-37394263 | MS.gene068166:intron | 10.0% |
| !! | GAATAAGAATATCAATTATT+CGG | - | chr1.4:37394615-37394634 | None:intergenic | 15.0% |
| !! | TTATCGTTTATTATTTGATT+TGG | + | chr1.4:37394128-37394147 | MS.gene068166:intron | 15.0% |
| !!! | TATCGTTTATTATTTGATTT+GGG | + | chr1.4:37394129-37394148 | MS.gene068166:intron | 15.0% |
| !! | GAAAAATCTGAATAGTTTAT+TGG | + | chr1.4:37394209-37394228 | MS.gene068166:intron | 20.0% |
| !!! | AGAAAACCCTAATTTAATTT+AGG | - | chr1.4:37394179-37394198 | None:intergenic | 20.0% |
| !!! | AGCAAATTTGCATTTTTTAA+TGG | - | chr1.4:37394923-37394942 | None:intergenic | 20.0% |
| !!! | ATCATATTTTTTTCCTTTGT+AGG | + | chr1.4:37394955-37394974 | MS.gene068166:intron | 20.0% |
| !!! | ATGTTTATGTTATGTTTTGT+TGG | + | chr1.4:37394677-37394696 | MS.gene068166:intron | 20.0% |
| !!! | ATTTCAATTTGTCTTTTGTT+TGG | + | chr1.4:37394325-37394344 | MS.gene068166:intron | 20.0% |
| !!! | TAAATTAAATTAGGGTTTTC+TGG | + | chr1.4:37394178-37394197 | MS.gene068166:intron | 20.0% |
| !!! | TTGTAGGATATTGTTATTTA+TGG | + | chr1.4:37394505-37394524 | MS.gene068166:intron | 20.0% |
| !!! | TTTCAATTTGTCTTTTGTTT+GGG | + | chr1.4:37394326-37394345 | MS.gene068166:intron | 20.0% |
| ! | GAAATCATTCTTAATGTTGA+AGG | - | chr1.4:37395077-37395096 | None:intergenic | 25.0% |
| !! | AGCGATTTTATGTTTTCATT+TGG | + | chr1.4:37394559-37394578 | MS.gene068166:intron | 25.0% |
| !! | TAATAAAGGATTAGGGTTTT+TGG | + | chr1.4:37394252-37394271 | MS.gene068166:intron | 25.0% |
| !!! | ATTTGATTTGGGTTTTGTTT+TGG | + | chr1.4:37394140-37394159 | MS.gene068166:intron | 25.0% |
| !!! | CATCTTGGTAAGTTTTTTTA+GGG | + | chr1.4:37394091-37394110 | MS.gene068166:intron | 25.0% |
| !!! | TCATCTTGGTAAGTTTTTTT+AGG | + | chr1.4:37394090-37394109 | MS.gene068166:intron | 25.0% |
| AAATAATTAGCAGCCTACAA+AGG | - | chr1.4:37394971-37394990 | None:intergenic | 30.0% | |
| AAATATTCGTCGTGTTTGTT+TGG | + | chr1.4:37394720-37394739 | MS.gene068166:intron | 30.0% | |
| AATTGTGCCTCTATTCTATT+GGG | + | chr1.4:37394416-37394435 | MS.gene068166:intron | 30.0% | |
| AGAGAATTTAACATAGTGAG+TGG | - | chr1.4:37394650-37394669 | None:intergenic | 30.0% | |
| TGATAACCAAATGATGAACA+TGG | + | chr1.4:37394812-37394831 | MS.gene068166:intron | 30.0% | |
| ! | TAATAATCCCATGTTTCTGA+TGG | + | chr1.4:37394877-37394896 | MS.gene068166:intron | 30.0% |
| ! | TTTAATGGCAATGAGTTGAA+GGG | - | chr1.4:37394908-37394927 | None:intergenic | 30.0% |
| !! | TCTTTTTGTTCTTGAGTTGT+AGG | + | chr1.4:37394489-37394508 | MS.gene068166:intron | 30.0% |
| !! | TTAAATTAGGGTTTTCTGGT+TGG | + | chr1.4:37394182-37394201 | MS.gene068166:intron | 30.0% |
| !! | TTGTTTGGGTTGAATGTAAT+GGG | + | chr1.4:37394340-37394359 | MS.gene068166:intron | 30.0% |
| !! | TTTGTTTGGGTTGAATGTAA+TGG | + | chr1.4:37394339-37394358 | MS.gene068166:intron | 30.0% |
| !! | TTTTAATGGCAATGAGTTGA+AGG | - | chr1.4:37394909-37394928 | None:intergenic | 30.0% |
| CAATTGTGCCTCTATTCTAT+TGG | + | chr1.4:37394415-37394434 | MS.gene068166:intron | 35.0% | |
| CATATAGCCCAATAGAATAG+AGG | - | chr1.4:37394426-37394445 | None:intergenic | 35.0% | |
| GACAATCCATGTTCATCATT+TGG | - | chr1.4:37394821-37394840 | None:intergenic | 35.0% | |
| GGGGGTCCTAAATTAAATTA+GGG | + | chr1.4:37394170-37394189 | MS.gene068166:intron | 35.0% | |
| TAAGAATGATTTCTCTCCAG+AGG | + | chr1.4:37395084-37395103 | MS.gene068166:CDS | 35.0% | |
| TGGGGGTCCTAAATTAAATT+AGG | + | chr1.4:37394169-37394188 | MS.gene068166:intron | 35.0% | |
| TTTGAATATCAAGAACCTGC+TGG | + | chr1.4:37394988-37395007 | MS.gene068166:CDS | 35.0% | |
| !! | TACGCTTTTTGATCTCATCT+TGG | + | chr1.4:37394076-37394095 | MS.gene068166:CDS | 35.0% |
| !!! | AGGATTAGGGTTTTTGGTTT+TGG | + | chr1.4:37394258-37394277 | MS.gene068166:intron | 35.0% |
| !!! | GGATTAGGGTTTTTGGTTTT+GGG | + | chr1.4:37394259-37394278 | MS.gene068166:intron | 35.0% |
| !!! | GGTTTTGTTTTGGAATGCTT+GGG | + | chr1.4:37394150-37394169 | MS.gene068166:intron | 35.0% |
| !!! | GTTTTGTTTTGGAATGCTTG+GGG | + | chr1.4:37394151-37394170 | MS.gene068166:intron | 35.0% |
| !!! | TTTTGTTTTGGAATGCTTGG+GGG | + | chr1.4:37394152-37394171 | MS.gene068166:intron | 35.0% |
| AAAAAGATAGCCACAAGAGC+AGG | - | chr1.4:37394476-37394495 | None:intergenic | 40.0% | |
| AAGTTCGTAGGGAAAACCAA+TGG | + | chr1.4:37395116-37395135 | MS.gene068166:CDS | 40.0% | |
| AGTTCGTAGGGAAAACCAAT+GGG | + | chr1.4:37395117-37395136 | MS.gene068166:CDS | 40.0% | |
| GGTGTAACCATCAGAAACAT+GGG | - | chr1.4:37394887-37394906 | None:intergenic | 40.0% | |
| ! | AAGATCTTGCTGGTAACGTT+GGG | - | chr1.4:37393942-37393961 | None:intergenic | 40.0% |
| !!! | GGGTTTTGTTTTGGAATGCT+TGG | + | chr1.4:37394149-37394168 | MS.gene068166:intron | 40.0% |
| AAGGTCTTGCGAATCTCTTC+AGG | - | chr1.4:37395058-37395077 | None:intergenic | 45.0% | |
| ACGAGGATGAGCTTAAGTCT+TGG | + | chr1.4:37394024-37394043 | MS.gene068166:CDS | 45.0% | |
| ACTGTGGCAGACATGATCAA+GGG | + | chr1.4:37395025-37395044 | MS.gene068166:CDS | 45.0% | |
| CAACGTTACCAGCAAGATCT+TGG | + | chr1.4:37393941-37393960 | MS.gene068166:CDS | 45.0% | |
| CGAGGATGAGCTTAAGTCTT+GGG | + | chr1.4:37394025-37394044 | MS.gene068166:CDS | 45.0% | |
| CTGATCAACCTTGACGAACT+CGG | - | chr1.4:37394054-37394073 | None:intergenic | 45.0% | |
| GACTTAAGCTCATCCTCGTT+AGG | - | chr1.4:37394023-37394042 | None:intergenic | 45.0% | |
| GGGTGTAACCATCAGAAACA+TGG | - | chr1.4:37394888-37394907 | None:intergenic | 45.0% | |
| TGATTTCTCTCCAGAGGAAG+AGG | + | chr1.4:37395090-37395109 | MS.gene068166:CDS | 45.0% | |
| TGCTGAAGACAAACCTAACG+AGG | + | chr1.4:37394007-37394026 | MS.gene068166:CDS | 45.0% | |
| TGTTGAATTGCCTGCTCTTG+TGG | + | chr1.4:37394463-37394482 | MS.gene068166:intron | 45.0% | |
| ! | ATCACTCTGAAGAGTTCCGA+CGG | + | chr1.4:37393822-37393841 | MS.gene068166:CDS | 45.0% |
| ! | CAAGATCTTGCTGGTAACGT+TGG | - | chr1.4:37393943-37393962 | None:intergenic | 45.0% |
| ! | TTGCAAGAAGCATGTTGACG+CGG | + | chr1.4:37393980-37393999 | MS.gene068166:CDS | 45.0% |
| AGGAAGAGGAGGAAGTTCGT+AGG | + | chr1.4:37395104-37395123 | MS.gene068166:CDS | 50.0% | |
| CTGTGGCAGACATGATCAAG+GGG | + | chr1.4:37395026-37395045 | MS.gene068166:CDS | 50.0% | |
| GACTGTGGCAGACATGATCA+AGG | + | chr1.4:37395024-37395043 | MS.gene068166:CDS | 50.0% | |
| GGAAGAGGAGGAAGTTCGTA+GGG | + | chr1.4:37395105-37395124 | MS.gene068166:CDS | 50.0% | |
| GGATCTTACATGCCAGACTG+TGG | + | chr1.4:37395009-37395028 | MS.gene068166:CDS | 50.0% | |
| TACCAGCAAGATCTTGGCGA+AGG | + | chr1.4:37393947-37393966 | MS.gene068166:CDS | 50.0% | |
| TCTGGCATGTAAGATCCAGC+AGG | - | chr1.4:37395006-37395025 | None:intergenic | 50.0% | |
| TGATCATGTCTGCCACAGTC+TGG | - | chr1.4:37395024-37395043 | None:intergenic | 50.0% | |
| TTGGGATTCCGAGTTCGTCA+AGG | + | chr1.4:37394043-37394062 | MS.gene068166:CDS | 50.0% | |
| TTTCTCTCCAGAGGAAGAGG+AGG | + | chr1.4:37395093-37395112 | MS.gene068166:CDS | 50.0% | |
| ! | CGAGTTCGTCAAGGTTGATC+AGG | + | chr1.4:37394052-37394071 | MS.gene068166:CDS | 50.0% |
| ! | GAAGATGATTGCGCTGACAG+TGG | + | chr1.4:37393906-37393925 | MS.gene068166:CDS | 50.0% |
| ! | TGCTGGTAACGTTGGGAAGA+GGG | - | chr1.4:37393935-37393954 | None:intergenic | 50.0% |
| ! | TTGCTGGTAACGTTGGGAAG+AGG | - | chr1.4:37393936-37393955 | None:intergenic | 50.0% |
| AACCGCTTCATCGACCTCGA+AGG | - | chr1.4:37393853-37393872 | None:intergenic | 55.0% | |
| CACCTTCGCCAAGATCTTGC+TGG | - | chr1.4:37393952-37393971 | None:intergenic | 55.0% | |
| CGAACTTCCTCCTCTTCCTC+TGG | - | chr1.4:37395103-37395122 | None:intergenic | 55.0% | |
| GACCTTCGAGGTCGATGAAG+CGG | + | chr1.4:37393848-37393867 | MS.gene068166:CDS | 55.0% | |
| GGTCGATGAAGCGGTTGCTT+TGG | + | chr1.4:37393857-37393876 | MS.gene068166:CDS | 55.0% | |
| GACCTCGAAGGTCTCACCGT+CGG | - | chr1.4:37393841-37393860 | None:intergenic | 60.0% | |
| TTCCGACGGTGAGACCTTCG+AGG | + | chr1.4:37393836-37393855 | MS.gene068166:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 37393801 | 37395150 | 37393801 | ID=MS.gene068166 |
| chr1.4 | mRNA | 37393801 | 37395150 | 37393801 | ID=MS.gene068166.t1;Parent=MS.gene068166 |
| chr1.4 | exon | 37393801 | 37394097 | 37393801 | ID=MS.gene068166.t1.exon1;Parent=MS.gene068166.t1 |
| chr1.4 | CDS | 37393801 | 37394097 | 37393801 | ID=cds.MS.gene068166.t1;Parent=MS.gene068166.t1 |
| chr1.4 | exon | 37394977 | 37395150 | 37394977 | ID=MS.gene068166.t1.exon2;Parent=MS.gene068166.t1 |
| chr1.4 | CDS | 37394977 | 37395150 | 37394977 | ID=cds.MS.gene068166.t1;Parent=MS.gene068166.t1 |
| Gene Sequence |
| Protein sequence |
