Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08649.t1 | XP_013456005.1 | 99.1 | 107 | 1 | 0 | 4 | 110 | 79 | 185 | 1.30E-50 | 208.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08649.t1 | Q9SKN3 | 77.6 | 107 | 24 | 0 | 4 | 110 | 73 | 179 | 3.6e-41 | 168.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08649.t1 | I3SCI9 | 99.1 | 107 | 1 | 0 | 4 | 110 | 79 | 185 | 9.5e-51 | 208.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene04918 | MS.gene08649 | 0.812302 | 4.54E-51 | -1.69E-46 |
MS.gene04920 | MS.gene08649 | 0.80872 | 2.70E-50 | -1.69E-46 |
MS.gene049283 | MS.gene08649 | 0.836472 | 9.17E-57 | -1.69E-46 |
MS.gene049368 | MS.gene08649 | 0.801732 | 7.84E-49 | -1.69E-46 |
MS.gene049580 | MS.gene08649 | 0.816201 | 6.25E-52 | -1.69E-46 |
MS.gene049653 | MS.gene08649 | 0.808389 | 3.17E-50 | -1.69E-46 |
MS.gene049680 | MS.gene08649 | 0.846391 | 2.24E-59 | -1.69E-46 |
MS.gene049983 | MS.gene08649 | 0.821538 | 3.83E-53 | -1.69E-46 |
MS.gene05029 | MS.gene08649 | 0.827955 | 1.18E-54 | -1.69E-46 |
MS.gene050414 | MS.gene08649 | 0.809211 | 2.12E-50 | -1.69E-46 |
MS.gene050559 | MS.gene08649 | 0.802174 | 6.36E-49 | -1.69E-46 |
MS.gene050646 | MS.gene08649 | 0.817463 | 3.25E-52 | -1.69E-46 |
MS.gene050752 | MS.gene08649 | 0.858625 | 7.25E-63 | -1.69E-46 |
MS.gene050838 | MS.gene08649 | 0.806996 | 6.27E-50 | -1.69E-46 |
MS.gene050945 | MS.gene08649 | 0.83231 | 1.02E-55 | -1.69E-46 |
MS.gene050955 | MS.gene08649 | 0.861891 | 7.46E-64 | -1.69E-46 |
MS.gene051003 | MS.gene08649 | 0.85999 | 2.82E-63 | -1.69E-46 |
MS.gene051043 | MS.gene08649 | 0.824827 | 6.54E-54 | -1.69E-46 |
MS.gene051234 | MS.gene08649 | 0.862549 | 4.68E-64 | -1.69E-46 |
MS.gene051343 | MS.gene08649 | 0.817823 | 2.70E-52 | -1.69E-46 |
MS.gene051365 | MS.gene08649 | 0.803715 | 3.05E-49 | -1.69E-46 |
MS.gene051699 | MS.gene08649 | 0.804075 | 2.57E-49 | -1.69E-46 |
MS.gene051902 | MS.gene08649 | 0.815768 | 7.80E-52 | -1.69E-46 |
MS.gene051975 | MS.gene08649 | 0.802606 | 5.18E-49 | -1.69E-46 |
MS.gene052072 | MS.gene08649 | 0.833956 | 3.96E-56 | -1.69E-46 |
MS.gene052296 | MS.gene08649 | 0.827797 | 1.28E-54 | -1.69E-46 |
MS.gene052533 | MS.gene08649 | 0.8293 | 5.56E-55 | -1.69E-46 |
MS.gene052793 | MS.gene08649 | 0.817106 | 3.92E-52 | -1.69E-46 |
MS.gene052947 | MS.gene08649 | 0.80754 | 4.81E-50 | -1.69E-46 |
MS.gene053298 | MS.gene08649 | 0.807054 | 6.09E-50 | -1.69E-46 |
MS.gene053456 | MS.gene08649 | 0.809021 | 2.32E-50 | -1.69E-46 |
MS.gene05364 | MS.gene08649 | 0.811698 | 6.15E-51 | -1.69E-46 |
MS.gene053931 | MS.gene08649 | 0.802258 | 6.11E-49 | -1.69E-46 |
MS.gene053963 | MS.gene08649 | 0.813906 | 2.02E-51 | -1.69E-46 |
MS.gene054004 | MS.gene08649 | 0.813846 | 2.08E-51 | -1.69E-46 |
MS.gene054403 | MS.gene08649 | 0.862419 | 5.14E-64 | -1.69E-46 |
MS.gene054413 | MS.gene08649 | 0.803353 | 3.63E-49 | -1.69E-46 |
MS.gene05469 | MS.gene08649 | 0.806618 | 7.54E-50 | -1.69E-46 |
MS.gene05548 | MS.gene08649 | 0.806997 | 6.27E-50 | -1.69E-46 |
MS.gene055513 | MS.gene08649 | 0.802869 | 4.57E-49 | -1.69E-46 |
MS.gene055555 | MS.gene08649 | 0.826565 | 2.53E-54 | -1.69E-46 |
MS.gene056699 | MS.gene08649 | 0.811409 | 7.10E-51 | -1.69E-46 |
MS.gene056986 | MS.gene08649 | 0.820764 | 5.77E-53 | -1.69E-46 |
MS.gene057102 | MS.gene08649 | 0.860171 | 2.49E-63 | -1.69E-46 |
MS.gene057208 | MS.gene08649 | 0.807646 | 4.57E-50 | -1.69E-46 |
MS.gene057234 | MS.gene08649 | 0.802203 | 6.27E-49 | -1.69E-46 |
MS.gene057694 | MS.gene08649 | 0.806565 | 7.73E-50 | -1.69E-46 |
MS.gene057705 | MS.gene08649 | 0.833164 | 6.24E-56 | -1.69E-46 |
MS.gene05781 | MS.gene08649 | 0.823608 | 1.26E-53 | -1.69E-46 |
MS.gene057999 | MS.gene08649 | 0.816596 | 5.10E-52 | -1.69E-46 |
MS.gene058008 | MS.gene08649 | 0.848738 | 5.06E-60 | -1.69E-46 |
MS.gene058009 | MS.gene08649 | 0.826057 | 3.34E-54 | -1.69E-46 |
MS.gene058074 | MS.gene08649 | 0.813091 | 3.05E-51 | -1.69E-46 |
MS.gene058159 | MS.gene08649 | 0.804472 | 2.13E-49 | -1.69E-46 |
MS.gene058781 | MS.gene08649 | 0.815259 | 1.01E-51 | -1.69E-46 |
MS.gene058783 | MS.gene08649 | 0.819816 | 9.52E-53 | -1.69E-46 |
MS.gene059146 | MS.gene08649 | 0.838247 | 3.22E-57 | -1.69E-46 |
MS.gene05952 | MS.gene08649 | 0.825441 | 4.68E-54 | -1.69E-46 |
MS.gene059590 | MS.gene08649 | 0.806081 | 9.78E-50 | -1.69E-46 |
MS.gene05985 | MS.gene08649 | -0.846144 | 2.61E-59 | -1.69E-46 |
MS.gene059901 | MS.gene08649 | -0.803242 | 3.83E-49 | -1.69E-46 |
MS.gene06011 | MS.gene08649 | 0.813635 | 2.32E-51 | -1.69E-46 |
MS.gene06018 | MS.gene08649 | 0.8163 | 5.94E-52 | -1.69E-46 |
MS.gene060763 | MS.gene08649 | 0.832366 | 9.85E-56 | -1.69E-46 |
MS.gene060935 | MS.gene08649 | 0.858683 | 6.96E-63 | -1.69E-46 |
MS.gene060937 | MS.gene08649 | 0.853204 | 2.79E-61 | -1.69E-46 |
MS.gene061100 | MS.gene08649 | 0.821909 | 3.14E-53 | -1.69E-46 |
MS.gene061243 | MS.gene08649 | 0.800136 | 1.66E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08649.t1 | MTR_4g058950 | 99.065 | 107 | 1 | 0 | 4 | 110 | 79 | 185 | 1.66e-73 | 216 |
MS.gene08649.t1 | MTR_1g074040 | 47.170 | 106 | 55 | 1 | 4 | 108 | 44 | 149 | 2.27e-26 | 95.9 |
MS.gene08649.t1 | MTR_1g073950 | 45.794 | 107 | 57 | 1 | 4 | 109 | 45 | 151 | 9.39e-24 | 89.4 |
MS.gene08649.t1 | MTR_4g021340 | 44.037 | 109 | 58 | 1 | 4 | 109 | 46 | 154 | 5.20e-23 | 87.4 |
MS.gene08649.t1 | MTR_8g078830 | 37.383 | 107 | 66 | 1 | 4 | 109 | 45 | 151 | 8.71e-19 | 76.6 |
MS.gene08649.t1 | MTR_5g018680 | 37.037 | 108 | 67 | 1 | 3 | 109 | 44 | 151 | 8.77e-11 | 55.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08649.t1 | AT2G28370 | 77.570 | 107 | 24 | 0 | 4 | 110 | 73 | 179 | 3.08e-57 | 175 |
MS.gene08649.t1 | AT2G37200 | 72.222 | 90 | 24 | 1 | 21 | 110 | 92 | 180 | 5.51e-40 | 131 |
MS.gene08649.t1 | AT2G37200 | 72.222 | 90 | 24 | 1 | 21 | 110 | 121 | 209 | 1.47e-39 | 131 |
MS.gene08649.t1 | AT3G23200 | 48.148 | 108 | 55 | 1 | 3 | 109 | 17 | 124 | 1.60e-27 | 98.2 |
MS.gene08649.t1 | AT3G23200 | 47.664 | 107 | 55 | 1 | 4 | 109 | 45 | 151 | 1.72e-26 | 96.3 |
MS.gene08649.t1 | AT3G53850 | 44.545 | 110 | 58 | 1 | 3 | 109 | 31 | 140 | 1.62e-25 | 93.6 |
MS.gene08649.t1 | AT3G53850 | 44.037 | 109 | 58 | 1 | 4 | 109 | 45 | 153 | 9.73e-25 | 91.7 |
MS.gene08649.t1 | AT3G53850 | 44.037 | 109 | 58 | 1 | 4 | 109 | 45 | 153 | 9.73e-25 | 91.7 |
MS.gene08649.t1 | AT5G02060 | 44.860 | 107 | 56 | 1 | 4 | 107 | 45 | 151 | 8.93e-19 | 76.6 |
MS.gene08649.t1 | AT3G50810 | 40.187 | 107 | 63 | 1 | 4 | 109 | 45 | 151 | 1.62e-18 | 75.9 |
MS.gene08649.t1 | AT3G50810 | 40.187 | 107 | 63 | 1 | 4 | 109 | 45 | 151 | 1.62e-18 | 75.9 |
MS.gene08649.t1 | AT3G50810 | 40.187 | 107 | 63 | 1 | 4 | 109 | 45 | 151 | 1.62e-18 | 75.9 |
MS.gene08649.t1 | AT4G37235 | 34.906 | 106 | 65 | 2 | 4 | 109 | 47 | 148 | 1.36e-11 | 57.8 |
Find 23 sgRNAs with CRISPR-Local
Find 55 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACTGATGTTTATGCCATTT+TGG | 0.142401 | 4.1:-39371685 | MS.gene08649:CDS |
TCTTCTTAACTTCTGGTCTT+TGG | 0.220309 | 4.1:-39371277 | MS.gene08649:CDS |
CGTCATTTCTTCTTAACTTC+TGG | 0.294825 | 4.1:-39371284 | MS.gene08649:CDS |
CTGCTGGCTTGCAGACTTTG+TGG | 0.320664 | 4.1:-39371725 | MS.gene08649:CDS |
CAAAGATCGTCTTACCAAAA+TGG | 0.321266 | 4.1:+39371671 | None:intergenic |
AGTTTCCTTGTTGCGGCTGC+TGG | 0.344483 | 4.1:-39371741 | MS.gene08649:CDS |
CTTGTCAGTTCATTTACAAT+TGG | 0.411892 | 4.1:-39371636 | MS.gene08649:CDS |
GTGCTCATTGATAATGATCT+TGG | 0.426791 | 4.1:-39371384 | MS.gene08649:CDS |
GCAGCAGCTTGTGCATCAGC+GGG | 0.451898 | 4.1:-39371414 | MS.gene08649:CDS |
TGCAGCAGCTTGTGCATCAG+CGG | 0.471402 | 4.1:-39371415 | MS.gene08649:CDS |
CTTTGACGTATATCATGGTC+AGG | 0.494854 | 4.1:-39372420 | None:intergenic |
CAGGCATGGCATTCATATGC+TGG | 0.517979 | 4.1:-39371320 | MS.gene08649:CDS |
GTTCATTTACAATTGGCGAT+GGG | 0.519096 | 4.1:-39371629 | MS.gene08649:CDS |
GTTCAGTTTGAAACGGCTAC+AGG | 0.524200 | 4.1:-39371339 | MS.gene08649:CDS |
CCACTGTGTTCAGTTTGAAA+CGG | 0.533491 | 4.1:-39371346 | MS.gene08649:CDS |
AGTTCATTTACAATTGGCGA+TGG | 0.548303 | 4.1:-39371630 | MS.gene08649:CDS |
TTCATTTACAATTGGCGATG+GGG | 0.560218 | 4.1:-39371628 | MS.gene08649:intron |
GTTTGAAACGGCTACAGGCA+TGG | 0.571754 | 4.1:-39371334 | MS.gene08649:CDS |
GCAAGCCAGCAGCCGCAACA+AGG | 0.578048 | 4.1:+39371736 | None:intergenic |
ACTTCTGGTCTTTGGCATCG+AGG | 0.636800 | 4.1:-39371269 | MS.gene08649:CDS |
CAGAAGTTAAGAAGAAATGA+CGG | 0.644975 | 4.1:+39371285 | None:intergenic |
TTGTAAATGAACTGACAAGT+CGG | 0.646171 | 4.1:+39371640 | None:intergenic |
CCGTTTCAAACTGAACACAG+TGG | 0.767887 | 4.1:+39371346 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGTTAAATTGTTTTTTATAT+AGG | + | chr4.1:39371733-39371752 | None:intergenic | 10.0% |
!! | ATATAATGATCTGTTCAATT+AGG | + | chr4.1:39371829-39371848 | None:intergenic | 20.0% |
!! | CAAAGTTTCATATTAACTAT+TGG | - | chr4.1:39371364-39371383 | MS.gene08649:CDS | 20.0% |
!! | TAAGAGCTTATTTGTTTATT+TGG | - | chr4.1:39371584-39371603 | MS.gene08649:intron | 20.0% |
!!! | GAACAGATCATTATATATTT+TGG | - | chr4.1:39371833-39371852 | MS.gene08649:intron | 20.0% |
!!! | TCTATATAGCATTTTCAAAT+GGG | + | chr4.1:39372182-39372201 | None:intergenic | 20.0% |
!!! | TGCATTATTTCTATAATCAA+TGG | + | chr4.1:39371761-39371780 | None:intergenic | 20.0% |
! | AAACTCAATAAAACACTTAC+AGG | + | chr4.1:39371628-39371647 | None:intergenic | 25.0% |
! | ATTGTTGTAGAGTCTTAAAA+TGG | - | chr4.1:39371394-39371413 | MS.gene08649:CDS | 25.0% |
! | ATTTATTTGTAGACAATACC+AGG | - | chr4.1:39371503-39371522 | MS.gene08649:intron | 25.0% |
! | TAGTCTTTCGTAAATATAAG+AGG | + | chr4.1:39371878-39371897 | None:intergenic | 25.0% |
! | TATGAAACTTTGATAGAAAC+TGG | + | chr4.1:39371356-39371375 | None:intergenic | 25.0% |
! | TTGTTGTAGAGTCTTAAAAT+GGG | - | chr4.1:39371395-39371414 | MS.gene08649:CDS | 25.0% |
!! | ACAATATTAATGAGTCTTGT+TGG | + | chr4.1:39372078-39372097 | None:intergenic | 25.0% |
!! | CTCTATATAGCATTTTCAAA+TGG | + | chr4.1:39372183-39372202 | None:intergenic | 25.0% |
!!! | TATTTTGGCTTTATCTTTGT+TGG | - | chr4.1:39371848-39371867 | MS.gene08649:intron | 25.0% |
AAGCATTTGGTATTGTTGTA+TGG | - | chr4.1:39371456-39371475 | MS.gene08649:intron | 30.0% | |
ACATGTATCTTATTACATGC+AGG | - | chr4.1:39372215-39372234 | MS.gene08649:intron | 30.0% | |
ATTTGGTATTGTTGTATGGA+GGG | - | chr4.1:39371460-39371479 | MS.gene08649:intron | 30.0% | |
CAGAAGTTAAGAAGAAATGA+CGG | + | chr4.1:39372390-39372409 | None:intergenic | 30.0% | |
CTTGTCAGTTCATTTACAAT+TGG | - | chr4.1:39372036-39372055 | MS.gene08649:intron | 30.0% | |
TTGTAAATGAACTGACAAGT+CGG | + | chr4.1:39372035-39372054 | None:intergenic | 30.0% | |
! | CAACAATACCAAATGCTTTT+AGG | + | chr4.1:39371454-39371473 | None:intergenic | 30.0% |
! | TTTTATCAGTTTCCTTGTTG+CGG | - | chr4.1:39371924-39371943 | MS.gene08649:intron | 30.0% |
!! | TACTGATGTTTATGCCATTT+TGG | - | chr4.1:39371987-39372006 | MS.gene08649:intron | 30.0% |
AGTTCATTTACAATTGGCGA+TGG | - | chr4.1:39372042-39372061 | MS.gene08649:intron | 35.0% | |
ATATCAGAACCATCAAAACC+TGG | + | chr4.1:39371524-39371543 | None:intergenic | 35.0% | |
CAAAGATCGTCTTACCAAAA+TGG | + | chr4.1:39372004-39372023 | None:intergenic | 35.0% | |
CATTTGGTATTGTTGTATGG+AGG | - | chr4.1:39371459-39371478 | MS.gene08649:intron | 35.0% | |
CGTCATTTCTTCTTAACTTC+TGG | - | chr4.1:39372388-39372407 | MS.gene08649:intron | 35.0% | |
GTTCATTTACAATTGGCGAT+GGG | - | chr4.1:39372043-39372062 | MS.gene08649:intron | 35.0% | |
TTCATTTACAATTGGCGATG+GGG | - | chr4.1:39372044-39372063 | MS.gene08649:intron | 35.0% | |
TTTGGTATTGTTGTATGGAG+GGG | - | chr4.1:39371461-39371480 | MS.gene08649:intron | 35.0% | |
! | ATACCAAATGCTTTTAGGCA+TGG | + | chr4.1:39371449-39371468 | None:intergenic | 35.0% |
! | ATACTAGCCTACACTGTTTA+GGG | - | chr4.1:39371554-39371573 | MS.gene08649:intron | 35.0% |
! | TCTTCTTAACTTCTGGTCTT+TGG | - | chr4.1:39372395-39372414 | MS.gene08649:intron | 35.0% |
!! | GTGCTCATTGATAATGATCT+TGG | - | chr4.1:39372288-39372307 | MS.gene08649:intron | 35.0% |
!! | TAGACAATACCAGGTTTTGA+TGG | - | chr4.1:39371512-39371531 | MS.gene08649:intron | 35.0% |
AAGCTTCATAACGTGGACAT+TGG | - | chr4.1:39372129-39372148 | MS.gene08649:intron | 40.0% | |
CAAATCACCCTAAACAGTGT+AGG | + | chr4.1:39371564-39371583 | None:intergenic | 40.0% | |
CACTCTTAAGCTTCATAACG+TGG | - | chr4.1:39372122-39372141 | MS.gene08649:intron | 40.0% | |
CAGTGTAGGCTAGTATGTAT+TGG | + | chr4.1:39371550-39371569 | None:intergenic | 40.0% | |
CCACTGTGTTCAGTTTGAAA+CGG | - | chr4.1:39372326-39372345 | MS.gene08649:intron | 40.0% | |
! | CATACTAGCCTACACTGTTT+AGG | - | chr4.1:39371553-39371572 | MS.gene08649:intron | 40.0% |
CCGTTTCAAACTGAACACAG+TGG | + | chr4.1:39372329-39372348 | None:intergenic | 45.0% | |
! | GTTCAGTTTGAAACGGCTAC+AGG | - | chr4.1:39372333-39372352 | MS.gene08649:intron | 45.0% |
!! | GTGCCATGCCTAAAAGCATT+TGG | - | chr4.1:39371443-39371462 | MS.gene08649:intron | 45.0% |
CAGGCATGGCATTCATATGC+TGG | - | chr4.1:39372352-39372371 | MS.gene08649:intron | 50.0% | |
! | ACTTCTGGTCTTTGGCATCG+AGG | - | chr4.1:39372403-39372422 | MS.gene08649:intron | 50.0% |
! | GTTTGAAACGGCTACAGGCA+TGG | - | chr4.1:39372338-39372357 | MS.gene08649:intron | 50.0% |
AGTTTCCTTGTTGCGGCTGC+TGG | - | chr4.1:39371931-39371950 | MS.gene08649:intron | 55.0% | |
TGCAGCAGCTTGTGCATCAG+CGG | - | chr4.1:39372257-39372276 | MS.gene08649:intron | 55.0% | |
!! | CTGCTGGCTTGCAGACTTTG+TGG | - | chr4.1:39371947-39371966 | MS.gene08649:intron | 55.0% |
GCAGCAGCTTGTGCATCAGC+GGG | - | chr4.1:39372258-39372277 | MS.gene08649:intron | 60.0% | |
GCAAGCCAGCAGCCGCAACA+AGG | + | chr4.1:39371939-39371958 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 39371266 | 39372428 | 39371266 | ID=MS.gene08649 |
chr4.1 | mRNA | 39371266 | 39372428 | 39371266 | ID=MS.gene08649.t1;Parent=MS.gene08649 |
chr4.1 | exon | 39372421 | 39372428 | 39372421 | ID=MS.gene08649.t1.exon1;Parent=MS.gene08649.t1 |
chr4.1 | CDS | 39372421 | 39372428 | 39372421 | ID=cds.MS.gene08649.t1;Parent=MS.gene08649.t1 |
chr4.1 | exon | 39371629 | 39371761 | 39371629 | ID=MS.gene08649.t1.exon2;Parent=MS.gene08649.t1 |
chr4.1 | CDS | 39371629 | 39371761 | 39371629 | ID=cds.MS.gene08649.t1;Parent=MS.gene08649.t1 |
chr4.1 | exon | 39371266 | 39371457 | 39371266 | ID=MS.gene08649.t1.exon3;Parent=MS.gene08649.t1 |
chr4.1 | CDS | 39371266 | 39371457 | 39371266 | ID=cds.MS.gene08649.t1;Parent=MS.gene08649.t1 |
Gene Sequence |
Protein sequence |