Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54163.t1 | XP_013459883.1 | 97.8 | 417 | 9 | 0 | 58 | 474 | 64 | 480 | 1.80E-234 | 821.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54163.t1 | Q94IB8 | 78.7 | 417 | 89 | 0 | 58 | 474 | 63 | 479 | 3.1e-198 | 692.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54163.t1 | A0A072UVT1 | 97.8 | 417 | 9 | 0 | 58 | 474 | 64 | 480 | 1.3e-234 | 821.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene54163 | 0.821935 | 3.10E-53 | -1.69E-46 |
| MS.gene049368 | MS.gene54163 | 0.801119 | 1.05E-48 | -1.69E-46 |
| MS.gene049786 | MS.gene54163 | 0.825147 | 5.49E-54 | -1.69E-46 |
| MS.gene049861 | MS.gene54163 | 0.810472 | 1.13E-50 | -1.69E-46 |
| MS.gene050114 | MS.gene54163 | 0.811993 | 5.30E-51 | -1.69E-46 |
| MS.gene050317 | MS.gene54163 | 0.842318 | 2.78E-58 | -1.69E-46 |
| MS.gene050654 | MS.gene54163 | 0.807734 | 4.37E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene54163 | 0.822045 | 2.92E-53 | -1.69E-46 |
| MS.gene050941 | MS.gene54163 | 0.824535 | 7.66E-54 | -1.69E-46 |
| MS.gene051003 | MS.gene54163 | 0.816112 | 6.54E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene54163 | 0.801319 | 9.52E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene54163 | 0.805197 | 1.50E-49 | -1.69E-46 |
| MS.gene051365 | MS.gene54163 | 0.810259 | 1.26E-50 | -1.69E-46 |
| MS.gene051676 | MS.gene54163 | 0.806438 | 8.23E-50 | -1.69E-46 |
| MS.gene051902 | MS.gene54163 | 0.806264 | 8.95E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene54163 | 0.807396 | 5.16E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene54163 | 0.815359 | 9.63E-52 | -1.69E-46 |
| MS.gene052342 | MS.gene54163 | 0.816621 | 5.03E-52 | -1.69E-46 |
| MS.gene052434 | MS.gene54163 | 0.838125 | 3.46E-57 | -1.69E-46 |
| MS.gene053381 | MS.gene54163 | 0.825779 | 3.89E-54 | -1.69E-46 |
| MS.gene053456 | MS.gene54163 | 0.810793 | 9.66E-51 | -1.69E-46 |
| MS.gene055311 | MS.gene54163 | 0.819933 | 8.95E-53 | -1.69E-46 |
| MS.gene055313 | MS.gene54163 | 0.805173 | 1.52E-49 | -1.69E-46 |
| MS.gene055314 | MS.gene54163 | 0.808376 | 3.19E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene54163 | 0.808972 | 2.38E-50 | -1.69E-46 |
| MS.gene055603 | MS.gene54163 | 0.818658 | 1.75E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene54163 | 0.82362 | 1.26E-53 | -1.69E-46 |
| MS.gene056752 | MS.gene54163 | 0.80166 | 8.11E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene54163 | 0.823045 | 1.71E-53 | -1.69E-46 |
| MS.gene056986 | MS.gene54163 | 0.810394 | 1.18E-50 | -1.69E-46 |
| MS.gene056992 | MS.gene54163 | 0.803906 | 2.79E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene54163 | 0.831242 | 1.87E-55 | -1.69E-46 |
| MS.gene057999 | MS.gene54163 | 0.820979 | 5.15E-53 | -1.69E-46 |
| MS.gene058278 | MS.gene54163 | 0.801212 | 1.00E-48 | -1.69E-46 |
| MS.gene059050 | MS.gene54163 | 0.810255 | 1.26E-50 | -1.69E-46 |
| MS.gene059144 | MS.gene54163 | 0.803022 | 4.25E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene54163 | 0.801498 | 8.75E-49 | -1.69E-46 |
| MS.gene059360 | MS.gene54163 | 0.800885 | 1.17E-48 | -1.69E-46 |
| MS.gene059590 | MS.gene54163 | 0.806956 | 6.39E-50 | -1.69E-46 |
| MS.gene06010 | MS.gene54163 | 0.813915 | 2.01E-51 | -1.69E-46 |
| MS.gene06011 | MS.gene54163 | 0.838403 | 2.94E-57 | -1.69E-46 |
| MS.gene060259 | MS.gene54163 | 0.821009 | 5.07E-53 | -1.69E-46 |
| MS.gene060763 | MS.gene54163 | 0.823232 | 1.55E-53 | -1.69E-46 |
| MS.gene060935 | MS.gene54163 | 0.806018 | 1.01E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene54163 | 0.823265 | 1.52E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene022257 | MS.gene54163 | PPI |
| MS.gene25914 | MS.gene54163 | PPI |
| MS.gene54163 | MS.gene70587 | PPI |
| MS.gene54163 | MS.gene074392 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54163.t1 | MTR_3g054030 | 97.842 | 417 | 9 | 0 | 58 | 474 | 64 | 480 | 0.0 | 840 |
| MS.gene54163.t1 | MTR_5g072020 | 97.842 | 417 | 9 | 0 | 58 | 474 | 64 | 480 | 0.0 | 840 |
| MS.gene54163.t1 | MTR_1g018970 | 81.139 | 281 | 53 | 0 | 58 | 338 | 63 | 343 | 3.80e-167 | 475 |
| MS.gene54163.t1 | MTR_2g090820 | 75.410 | 122 | 18 | 1 | 335 | 444 | 15 | 136 | 1.85e-54 | 179 |
| MS.gene54163.t1 | MTR_1g019030 | 91.753 | 97 | 8 | 0 | 378 | 474 | 27 | 123 | 7.95e-53 | 174 |
| MS.gene54163.t1 | MTR_1g019000 | 94.595 | 74 | 4 | 0 | 299 | 372 | 21 | 94 | 3.30e-42 | 145 |
| MS.gene54163.t1 | MTR_6g033290 | 25.393 | 382 | 257 | 7 | 105 | 473 | 101 | 467 | 1.19e-34 | 135 |
| MS.gene54163.t1 | MTR_3g008020 | 22.568 | 257 | 169 | 7 | 104 | 340 | 100 | 346 | 8.21e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54163.t1 | AT4G36480 | 78.657 | 417 | 89 | 0 | 58 | 474 | 63 | 479 | 0.0 | 705 |
| MS.gene54163.t1 | AT4G36480 | 78.657 | 417 | 89 | 0 | 58 | 474 | 63 | 479 | 0.0 | 705 |
| MS.gene54163.t1 | AT4G36480 | 82.051 | 273 | 49 | 0 | 58 | 330 | 63 | 335 | 1.12e-174 | 494 |
| MS.gene54163.t1 | AT3G48780 | 26.247 | 381 | 253 | 7 | 105 | 472 | 101 | 466 | 1.77e-36 | 140 |
| MS.gene54163.t1 | AT3G48780 | 26.247 | 381 | 253 | 7 | 105 | 472 | 101 | 466 | 1.77e-36 | 140 |
| MS.gene54163.t1 | AT5G23670 | 25.459 | 381 | 256 | 7 | 105 | 472 | 101 | 466 | 9.41e-36 | 139 |
| MS.gene54163.t1 | AT5G23670 | 25.459 | 381 | 256 | 7 | 105 | 472 | 101 | 466 | 9.41e-36 | 139 |
| MS.gene54163.t1 | AT3G48790 | 26.488 | 336 | 219 | 7 | 146 | 472 | 7 | 323 | 1.53e-27 | 113 |
| MS.gene54163.t1 | AT3G48790 | 25.566 | 309 | 202 | 7 | 173 | 472 | 2 | 291 | 3.56e-20 | 91.7 |
| MS.gene54163.t1 | AT5G04620 | 24.038 | 416 | 250 | 15 | 77 | 461 | 70 | 450 | 1.46e-19 | 91.7 |
| MS.gene54163.t1 | AT5G04620 | 23.891 | 293 | 188 | 7 | 77 | 344 | 70 | 352 | 1.12e-18 | 88.6 |
| MS.gene54163.t1 | AT5G04620 | 24.793 | 363 | 210 | 16 | 111 | 461 | 6 | 317 | 1.59e-12 | 68.9 |
Find 98 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAACTTTGTTAATATAT+TGG | 0.157469 | 5.4:-61850835 | None:intergenic |
| GATTCAATTCTATACTCTTA+TGG | 0.157510 | 5.4:+61848989 | MS.gene54163:CDS |
| CAATTTAATGATATCATCTA+AGG | 0.207047 | 5.4:-61850252 | None:intergenic |
| TCTTTGTTTGTGATGCATTT+AGG | 0.233905 | 5.4:+61846545 | MS.gene54163:CDS |
| TTCAACTTTGTTAATATATT+GGG | 0.250485 | 5.4:-61850834 | None:intergenic |
| TTTGGTGTGCTTGGAAGTTC+TGG | 0.252911 | 5.4:+61850320 | MS.gene54163:CDS |
| TGCATTTAGGACCTGCCTTT+TGG | 0.256502 | 5.4:+61846558 | MS.gene54163:CDS |
| ATCTATAACTCTTGCACTTC+CGG | 0.274595 | 5.4:-61850551 | None:intergenic |
| ATTCAATTCTATACTCTTAT+GGG | 0.280484 | 5.4:+61848990 | MS.gene54163:CDS |
| GCAAACTATCTTGGGCTTAT+AGG | 0.284137 | 5.4:+61848673 | MS.gene54163:CDS |
| AACTTCTTTACCATTAACTA+TGG | 0.324145 | 5.4:-61848635 | None:intergenic |
| GGCCCACATACCATAGTTAA+TGG | 0.336802 | 5.4:+61848625 | MS.gene54163:CDS |
| GTTGTAAAATTCAAGAATTT+AGG | 0.340530 | 5.4:+61846599 | MS.gene54163:CDS |
| GCTATAGCCTATGGCGGCTA+GGG | 0.345415 | 5.4:-61846927 | None:intergenic |
| AGAACAACATTGCTGTGTTA+TGG | 0.375479 | 5.4:+61850856 | MS.gene54163:CDS |
| TTTAATCTCAAATAAACAAT+TGG | 0.376539 | 5.4:-61851105 | None:intergenic |
| TTATATCACATTCTTGGTTG+AGG | 0.385958 | 5.4:-61846951 | None:intergenic |
| TTTCCTCAGCAAACTATCTT+GGG | 0.388101 | 5.4:+61848665 | MS.gene54163:CDS |
| TATATCACATTCTTGGTTGA+GGG | 0.391631 | 5.4:-61846950 | None:intergenic |
| ACTTCTGCTCTAGAGAAATA+TGG | 0.391710 | 5.4:+61848805 | MS.gene54163:CDS |
| TATGGCGGCTAGGGGCTGCT+TGG | 0.399787 | 5.4:-61846918 | None:intergenic |
| CACAGCAATTCTTACACGTT+CGG | 0.407510 | 5.4:-61851178 | None:intergenic |
| ATAAGATTGTTTGTTTCTGC+AGG | 0.409979 | 5.4:+61851332 | MS.gene54163:CDS |
| AGCAACTCATTTGGTGTGCT+TGG | 0.418751 | 5.4:+61850311 | MS.gene54163:CDS |
| AGATGATATCATTAAATTGA+AGG | 0.426232 | 5.4:+61850256 | MS.gene54163:CDS |
| CAGTGCTTCTAGAAAGATAA+AGG | 0.430339 | 5.4:-61849588 | None:intergenic |
| GAAAGAAGATTCTGTATTTG+TGG | 0.431444 | 5.4:+61851262 | MS.gene54163:CDS |
| AGGCATCTGAATCATTGAAA+AGG | 0.432396 | 5.4:+61851378 | MS.gene54163:CDS |
| TTGGATGAGAGCAACTCATT+TGG | 0.436722 | 5.4:+61850302 | MS.gene54163:CDS |
| GGCTATAGCCTATGGCGGCT+AGG | 0.449256 | 5.4:-61846928 | None:intergenic |
| TAAGAGTATAGAATTGAATC+AGG | 0.451302 | 5.4:-61848986 | None:intergenic |
| TTACCATTAACTATGGTATG+TGG | 0.452309 | 5.4:-61848628 | None:intergenic |
| TTGATGAGTTATGTGATGAA+TGG | 0.460291 | 5.4:+61847768 | MS.gene54163:CDS |
| AATTTCTTATGCAGTGCTGC+TGG | 0.466285 | 5.4:+61848604 | MS.gene54163:intron |
| AGATCTTATAACGGCTGCTA+TGG | 0.467186 | 5.4:+61850495 | MS.gene54163:CDS |
| AAATAAACAATTGGTGACTC+TGG | 0.467192 | 5.4:-61851096 | None:intergenic |
| AAGCAGCCCCTAGCCGCCAT+AGG | 0.480277 | 5.4:+61846920 | MS.gene54163:CDS |
| AGAGGTCTCACTGAACACTA+TGG | 0.480877 | 5.4:+61850344 | MS.gene54163:CDS |
| GCACTATGAACCACCAGTGC+TGG | 0.487834 | 5.4:+61847829 | MS.gene54163:CDS |
| TTGAGATTAAAGAAGTCAAC+GGG | 0.490251 | 5.4:+61851117 | MS.gene54163:CDS |
| GGCATCTGAATCATTGAAAA+GGG | 0.490844 | 5.4:+61851379 | MS.gene54163:CDS |
| ATTGGCTACTGCAGGGTTGT+TGG | 0.493292 | 5.4:+61851044 | MS.gene54163:intron |
| GGCTGCTATGGGACATGCAT+TGG | 0.498301 | 5.4:+61850507 | MS.gene54163:CDS |
| TGATGAGTTATGTGATGAAT+GGG | 0.510790 | 5.4:+61847769 | MS.gene54163:CDS |
| TTACAGCGATTGAGTAGCTC+TGG | 0.523021 | 5.4:+61850735 | MS.gene54163:intron |
| AGAGAAGGAATAAGCGGTTG+TGG | 0.527869 | 5.4:-61847794 | None:intergenic |
| ATCTTATTCCTACAGGCAAA+CGG | 0.529325 | 5.4:-61851316 | None:intergenic |
| GATCTTATAACGGCTGCTAT+GGG | 0.532654 | 5.4:+61850496 | MS.gene54163:CDS |
| TGTAATCACCTCTCCAGCAC+TGG | 0.535327 | 5.4:-61847842 | None:intergenic |
| GTGCTTGGAAGTTCTGGAAG+AGG | 0.536425 | 5.4:+61850326 | MS.gene54163:CDS |
| GCTCTAGAGAAATATGGTGT+TGG | 0.536576 | 5.4:+61848811 | MS.gene54163:CDS |
| TGAGAAGTTAGATCTTATAA+CGG | 0.537678 | 5.4:+61850486 | MS.gene54163:CDS |
| TGCTATTGAACCACCGACCA+TGG | 0.539561 | 5.4:-61846522 | None:intergenic |
| CAGGGATGAAGGAGTCCACT+GGG | 0.540737 | 5.4:+61849552 | MS.gene54163:intron |
| ATTGCAGCGCTTGCAAGATA+CGG | 0.544886 | 5.4:-61850783 | None:intergenic |
| GGTATAGACAATCACCCAAA+AGG | 0.548264 | 5.4:-61846573 | None:intergenic |
| ATATCACATTCTTGGTTGAG+GGG | 0.551510 | 5.4:-61846949 | None:intergenic |
| TGTTGTTGAAGCTCTCTACC+AGG | 0.553954 | 5.4:+61849708 | MS.gene54163:CDS |
| TAGACAATCACCCAAAAGGC+AGG | 0.558082 | 5.4:-61846569 | None:intergenic |
| TACCATTAACTATGGTATGT+GGG | 0.558768 | 5.4:-61848627 | None:intergenic |
| ACAAACAATCTTATTCCTAC+AGG | 0.559718 | 5.4:-61851323 | None:intergenic |
| ACAGGGATGAAGGAGTCCAC+TGG | 0.559845 | 5.4:+61849551 | MS.gene54163:intron |
| CAATTGTTCCATAAAACCCA+CGG | 0.560580 | 5.4:-61848846 | None:intergenic |
| GGTTGAGGGGCTATAGCCTA+TGG | 0.562770 | 5.4:-61846936 | None:intergenic |
| TGACTCGCAATCGTGAAGCC+TGG | 0.563804 | 5.4:-61851072 | None:intergenic |
| TTGGGTGATTGTCTATACCA+AGG | 0.564840 | 5.4:+61846577 | MS.gene54163:CDS |
| TGCATATCTTTATCAAGAGA+AGG | 0.565672 | 5.4:-61847809 | None:intergenic |
| AACATTGCTGTGTTATGGAA+AGG | 0.565817 | 5.4:+61850861 | MS.gene54163:CDS |
| TGCAAGAGTTATAGATCACC+AGG | 0.568076 | 5.4:+61850558 | MS.gene54163:CDS |
| GCAGGGTTGTTGGAAATACC+AGG | 0.569040 | 5.4:+61851054 | MS.gene54163:intron |
| TTGGTTCATGTGGTCCCCGT+GGG | 0.570350 | 5.4:+61848830 | MS.gene54163:CDS |
| CGCTGTCCTTCCATGGTCGG+TGG | 0.570920 | 5.4:+61846512 | None:intergenic |
| TAAGATTGTTTGTTTCTGCA+GGG | 0.573662 | 5.4:+61851333 | MS.gene54163:CDS |
| CTATAGCCTATGGCGGCTAG+GGG | 0.576546 | 5.4:-61846926 | None:intergenic |
| TTTGAGATTAAAGAAGTCAA+CGG | 0.584081 | 5.4:+61851116 | MS.gene54163:CDS |
| AATTTAATGATATCATCTAA+GGG | 0.585413 | 5.4:-61850251 | None:intergenic |
| AGCAGGAATAGCACTGAACA+TGG | 0.585997 | 5.4:-61849020 | None:intergenic |
| CATGCATTGGCCACAGAAGG+AGG | 0.588651 | 5.4:+61850520 | MS.gene54163:CDS |
| AATCGCTGTCCTTCCATGGT+CGG | 0.589671 | 5.4:+61846509 | None:intergenic |
| AATTGTTCCATAAAACCCAC+GGG | 0.590052 | 5.4:-61848845 | None:intergenic |
| GGACATGCATTGGCCACAGA+AGG | 0.590206 | 5.4:+61850517 | MS.gene54163:CDS |
| GTCCACTGGGGAATACAGAA+TGG | 0.593062 | 5.4:+61849565 | MS.gene54163:CDS |
| ATGAACCACCAGTGCTGGAG+AGG | 0.602723 | 5.4:+61847834 | MS.gene54163:CDS |
| ACAGAAGGAGGATTCTGCAC+CGG | 0.604655 | 5.4:+61850532 | MS.gene54163:CDS |
| GGTGCAGAATCCTCCTTCTG+TGG | 0.610091 | 5.4:-61850530 | None:intergenic |
| GACAAGTGCCGTTTGCCTGT+AGG | 0.612786 | 5.4:+61851308 | MS.gene54163:CDS |
| AATCACCTCTCCAGCACTGG+TGG | 0.628042 | 5.4:-61847839 | None:intergenic |
| AAATATGGTGTTGGTTCATG+TGG | 0.629485 | 5.4:+61848820 | MS.gene54163:CDS |
| GTTGGTTCATGTGGTCCCCG+TGG | 0.636228 | 5.4:+61848829 | MS.gene54163:CDS |
| TTATCAAGAGAAGGAATAAG+CGG | 0.647888 | 5.4:-61847800 | None:intergenic |
| TTCAGAGTCTGATCTTCACA+AGG | 0.660377 | 5.4:+61851358 | MS.gene54163:CDS |
| GCAGCGCTTGCAAGATACGG+AGG | 0.673580 | 5.4:-61850780 | None:intergenic |
| AAGCCCAAGATAGTTTGCTG+AGG | 0.686766 | 5.4:-61848668 | None:intergenic |
| GGCCATTCTGTATTCCCCAG+TGG | 0.696448 | 5.4:-61849567 | None:intergenic |
| AGGAATAGCACTGAACATGG+TGG | 0.728012 | 5.4:-61849017 | None:intergenic |
| TGAGGGGCTATAGCCTATGG+CGG | 0.749476 | 5.4:-61846933 | None:intergenic |
| AGGGATGAAGGAGTCCACTG+GGG | 0.777778 | 5.4:+61849553 | MS.gene54163:intron |
| ATTGTTCCATAAAACCCACG+GGG | 0.815269 | 5.4:-61848844 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATTAGAAACTAAA+GGG | - | chr5.4:61848184-61848203 | None:intergenic | 10.0% |
| !! | TAGATAATTATTGAAATAAT+TGG | - | chr5.4:61849253-61849272 | None:intergenic | 10.0% |
| !! | TCCAAATAAATAAATTAAAA+AGG | + | chr5.4:61850974-61850993 | MS.gene54163:intron | 10.0% |
| !! | TTATATTTACTTTATATTGT+AGG | + | chr5.4:61848774-61848793 | MS.gene54163:intron | 10.0% |
| !!! | ATAATTTTGTATTTTTTAAC+AGG | + | chr5.4:61849533-61849552 | MS.gene54163:intron | 10.0% |
| !!! | TAATTTTGTATTTTTTAACA+GGG | + | chr5.4:61849534-61849553 | MS.gene54163:intron | 10.0% |
| !!! | TATTTTAAAAAATGGAAAAT+TGG | - | chr5.4:61848572-61848591 | None:intergenic | 10.0% |
| !! | AACTATTAAATTACAATGTT+AGG | + | chr5.4:61846981-61847000 | MS.gene54163:intron | 15.0% |
| !! | AATTTAATGATATCATCTAA+GGG | - | chr5.4:61850254-61850273 | None:intergenic | 15.0% |
| !! | ACTATTAAATTACAATGTTA+GGG | + | chr5.4:61846982-61847001 | MS.gene54163:intron | 15.0% |
| !! | AGAAAAAGAATTTATTGATA+TGG | - | chr5.4:61848729-61848748 | None:intergenic | 15.0% |
| !! | ATTGAAGTTAAAAATAAAGA+AGG | + | chr5.4:61848346-61848365 | MS.gene54163:intron | 15.0% |
| !! | ATTTAACAATAAAATGTCAT+AGG | + | chr5.4:61847392-61847411 | MS.gene54163:intron | 15.0% |
| !! | GAAAAAAAATTAGAAACTAA+AGG | - | chr5.4:61848185-61848204 | None:intergenic | 15.0% |
| !! | GAAAAAGAATTTATTGATAT+GGG | - | chr5.4:61848728-61848747 | None:intergenic | 15.0% |
| !! | TAAAATGATAAAAATAGATG+AGG | - | chr5.4:61847887-61847906 | None:intergenic | 15.0% |
| !! | TTAAATTGAAGGAAAAATAT+CGG | + | chr5.4:61850267-61850286 | MS.gene54163:CDS | 15.0% |
| !! | TTCAACTTTGTTAATATATT+GGG | - | chr5.4:61850837-61850856 | None:intergenic | 15.0% |
| !! | TTTAATCTCAAATAAACAAT+TGG | - | chr5.4:61851108-61851127 | None:intergenic | 15.0% |
| !!! | AATATTAAAGTTTGTTTTTG+AGG | + | chr5.4:61848878-61848897 | MS.gene54163:intron | 15.0% |
| !!! | ACAATCAGTATTTTAAAAAA+TGG | - | chr5.4:61848580-61848599 | None:intergenic | 15.0% |
| !!! | AGAATTCTGAAAATTATAAA+AGG | - | chr5.4:61850219-61850238 | None:intergenic | 15.0% |
| !!! | GCCTTTTTAATTTATTTATT+TGG | - | chr5.4:61850978-61850997 | None:intergenic | 15.0% |
| !!! | GTATATATTATAGGTTTTTT+AGG | - | chr5.4:61846675-61846694 | None:intergenic | 15.0% |
| !!! | TAAATTCATGAACTTTTTTT+AGG | + | chr5.4:61848026-61848045 | MS.gene54163:intron | 15.0% |
| !!! | TCTTTACTTTTTTATTACAA+TGG | + | chr5.4:61849436-61849455 | MS.gene54163:intron | 15.0% |
| !!! | TTTTATAATTTTCAGAATTC+TGG | + | chr5.4:61850218-61850237 | MS.gene54163:intron | 15.0% |
| !!! | TTTTTGGTTATAAATTAATG+TGG | + | chr5.4:61847660-61847679 | MS.gene54163:intron | 15.0% |
| !! | AACTTATATCATAGCATATA+GGG | + | chr5.4:61848309-61848328 | MS.gene54163:intron | 20.0% |
| !! | AGAAAACATAAGATTATTTC+AGG | - | chr5.4:61847967-61847986 | None:intergenic | 20.0% |
| !! | AGATGATATCATTAAATTGA+AGG | + | chr5.4:61850256-61850275 | MS.gene54163:CDS | 20.0% |
| !! | ATTCAATTCTATACTCTTAT+GGG | + | chr5.4:61848990-61849009 | MS.gene54163:CDS | 20.0% |
| !! | CAATTTAATGATATCATCTA+AGG | - | chr5.4:61850255-61850274 | None:intergenic | 20.0% |
| !! | CTTAAAAATATAATACCATC+AGG | + | chr5.4:61846694-61846713 | MS.gene54163:intron | 20.0% |
| !! | CTTCAACTTTGTTAATATAT+TGG | - | chr5.4:61850838-61850857 | None:intergenic | 20.0% |
| !! | GAAAACATAAGATTATTTCA+GGG | - | chr5.4:61847966-61847985 | None:intergenic | 20.0% |
| !! | GAAATATCAGTTATATAAAG+TGG | - | chr5.4:61849492-61849511 | None:intergenic | 20.0% |
| !! | GACAAAAAATTGAACAAAAA+TGG | - | chr5.4:61849106-61849125 | None:intergenic | 20.0% |
| !! | GTTGTAAAATTCAAGAATTT+AGG | + | chr5.4:61846599-61846618 | MS.gene54163:CDS | 20.0% |
| !! | GTTTGATCTTATCTATTATT+GGG | - | chr5.4:61846806-61846825 | None:intergenic | 20.0% |
| !! | TAAAAAAGGAGATATAATTG+TGG | + | chr5.4:61849048-61849067 | MS.gene54163:CDS | 20.0% |
| !! | TAAAATCAAATTTGTAGTTG+AGG | - | chr5.4:61847471-61847490 | None:intergenic | 20.0% |
| !! | TAAAGATAGTAATAAAACCA+GGG | - | chr5.4:61849422-61849441 | None:intergenic | 20.0% |
| !! | TAACTTATATCATAGCATAT+AGG | + | chr5.4:61848308-61848327 | MS.gene54163:intron | 20.0% |
| !! | TAGAAATTTGAATGCATTAA+CGG | - | chr5.4:61850432-61850451 | None:intergenic | 20.0% |
| !! | TATGATATAAGTTAACAAGT+CGG | - | chr5.4:61848302-61848321 | None:intergenic | 20.0% |
| !! | TGTTTGATCTTATCTATTAT+TGG | - | chr5.4:61846807-61846826 | None:intergenic | 20.0% |
| !! | TTTAAAAAATGGAAAATTGG+TGG | - | chr5.4:61848569-61848588 | None:intergenic | 20.0% |
| !!! | AACAATTTTCCTATTTTCAT+TGG | - | chr5.4:61847546-61847565 | None:intergenic | 20.0% |
| !!! | AACTTTTATATGAAATGCAT+TGG | + | chr5.4:61851026-61851045 | MS.gene54163:intron | 20.0% |
| !!! | CAATGTTTATTTCTTACTTT+CGG | + | chr5.4:61851202-61851221 | MS.gene54163:intron | 20.0% |
| !!! | TACTTTGATTTATTATGAAG+TGG | - | chr5.4:61846740-61846759 | None:intergenic | 20.0% |
| !!! | TCTTGGTATTTTACTATTTT+AGG | + | chr5.4:61847013-61847032 | MS.gene54163:intron | 20.0% |
| !!! | TCTTTTTTATATCACATTCT+TGG | - | chr5.4:61846960-61846979 | None:intergenic | 20.0% |
| ! | AAAGATAGTAATAAAACCAG+GGG | - | chr5.4:61849421-61849440 | None:intergenic | 25.0% |
| ! | AACAAATGTTATCAATCTCT+TGG | + | chr5.4:61846823-61846842 | MS.gene54163:intron | 25.0% |
| ! | AACTTCTTTACCATTAACTA+TGG | - | chr5.4:61848638-61848657 | None:intergenic | 25.0% |
| ! | ACCACATATATAGAACTATT+TGG | + | chr5.4:61849160-61849179 | MS.gene54163:intron | 25.0% |
| ! | ACTTCGTTTATATCTTCAAT+TGG | - | chr5.4:61849997-61850016 | None:intergenic | 25.0% |
| ! | ATATAACTGATATTTCAAGC+AGG | + | chr5.4:61849496-61849515 | MS.gene54163:intron | 25.0% |
| ! | ATATTAGATTGTGATGATTG+AGG | + | chr5.4:61848372-61848391 | MS.gene54163:intron | 25.0% |
| ! | ATTCTTAATTTCAGTACACT+TGG | - | chr5.4:61850631-61850650 | None:intergenic | 25.0% |
| ! | CATATATAGAACTATTTGGA+TGG | + | chr5.4:61849164-61849183 | MS.gene54163:intron | 25.0% |
| ! | GATTCAATTCTATACTCTTA+TGG | + | chr5.4:61848989-61849008 | MS.gene54163:CDS | 25.0% |
| ! | GTAAAGATAGTAATAAAACC+AGG | - | chr5.4:61849423-61849442 | None:intergenic | 25.0% |
| ! | GTATTGTAGTGTCTATTATT+TGG | + | chr5.4:61850925-61850944 | MS.gene54163:intron | 25.0% |
| ! | GTTATATGAACTACTATTTC+TGG | + | chr5.4:61849945-61849964 | MS.gene54163:intron | 25.0% |
| ! | TATTAGATTGTGATGATTGA+GGG | + | chr5.4:61848373-61848392 | MS.gene54163:intron | 25.0% |
| ! | TGAGAAGTTAGATCTTATAA+CGG | + | chr5.4:61850486-61850505 | MS.gene54163:CDS | 25.0% |
| !! | AATAAAAATATAGAAGCGCA+CGG | - | chr5.4:61849753-61849772 | None:intergenic | 25.0% |
| !! | AATATAACGCCTCAAATTTT+TGG | - | chr5.4:61849689-61849708 | None:intergenic | 25.0% |
| !! | AGGTAATCTTTTACACATTT+AGG | - | chr5.4:61846655-61846674 | None:intergenic | 25.0% |
| !! | ATATATTGGGATTTTCATCA+AGG | - | chr5.4:61850824-61850843 | None:intergenic | 25.0% |
| !! | ATTCTTGAATTTTACAACCT+TGG | - | chr5.4:61846597-61846616 | None:intergenic | 25.0% |
| !! | ATTTTCATGATCAAAACAGT+TGG | + | chr5.4:61847624-61847643 | MS.gene54163:intron | 25.0% |
| !! | GCAAGAATAGCAAAATTTTT+AGG | + | chr5.4:61848959-61848978 | MS.gene54163:CDS | 25.0% |
| !! | GGTAATCTTTTACACATTTA+GGG | - | chr5.4:61846654-61846673 | None:intergenic | 25.0% |
| !! | GTAATCTTTTACACATTTAG+GGG | - | chr5.4:61846653-61846672 | None:intergenic | 25.0% |
| !! | TAAGAGTATAGAATTGAATC+AGG | - | chr5.4:61848989-61849008 | None:intergenic | 25.0% |
| !! | TCCAAATAGTTCTATATATG+TGG | - | chr5.4:61849164-61849183 | None:intergenic | 25.0% |
| !! | TTTCTTGCAATTTGAAGTAT+TGG | + | chr5.4:61849916-61849935 | MS.gene54163:intron | 25.0% |
| !! | TTTGAGATTAAAGAAGTCAA+CGG | + | chr5.4:61851116-61851135 | MS.gene54163:CDS | 25.0% |
| !! | TTTTCATTCATAATTTCTGC+AGG | + | chr5.4:61847742-61847761 | MS.gene54163:intron | 25.0% |
| !!! | AACTGTTTTGATCATGAAAA+TGG | - | chr5.4:61847625-61847644 | None:intergenic | 25.0% |
| !!! | ACAATTTTAATGTTTCTTCC+GGG | - | chr5.4:61849224-61849243 | None:intergenic | 25.0% |
| !!! | ACTGTTTTGATCATGAAAAT+GGG | - | chr5.4:61847624-61847643 | None:intergenic | 25.0% |
| !!! | ATATCGGTTTCGTATTTTAT+TGG | + | chr5.4:61850283-61850302 | MS.gene54163:CDS | 25.0% |
| !!! | CACAATTTTAATGTTTCTTC+CGG | - | chr5.4:61849225-61849244 | None:intergenic | 25.0% |
| !!! | TACTGATTCATAAACAAACT+TGG | + | chr5.4:61850601-61850620 | MS.gene54163:intron | 25.0% |
| AAACACAAATTGTGAGCATA+TGG | + | chr5.4:61850022-61850041 | MS.gene54163:intron | 30.0% | |
| AAGTTCTCATGTGATTTCAT+AGG | + | chr5.4:61848242-61848261 | MS.gene54163:intron | 30.0% | |
| AATCACGTAAATCAGACATT+AGG | + | chr5.4:61848471-61848490 | MS.gene54163:intron | 30.0% | |
| ACAAACAATCTTATTCCTAC+AGG | - | chr5.4:61851326-61851345 | None:intergenic | 30.0% | |
| ACATAAGATTATTTCAGGGA+AGG | - | chr5.4:61847962-61847981 | None:intergenic | 30.0% | |
| ACTTATTGTTCTGTATTCAC+AGG | + | chr5.4:61851235-61851254 | MS.gene54163:intron | 30.0% | |
| AGAATGTACAAGAACTAACA+TGG | - | chr5.4:61847704-61847723 | None:intergenic | 30.0% | |
| AGTTCTATATATGTGGTGTA+TGG | - | chr5.4:61849157-61849176 | None:intergenic | 30.0% | |
| AGTTCTTGTACATTCTTATC+TGG | + | chr5.4:61847708-61847727 | MS.gene54163:intron | 30.0% | |
| ATGTACCAAAAATCTCTGTT+TGG | + | chr5.4:61850376-61850395 | MS.gene54163:intron | 30.0% | |
| ATTCAAATTTCTACTGCTGT+TGG | + | chr5.4:61850439-61850458 | MS.gene54163:intron | 30.0% | |
| CCTTTGACATCTCAAAAAAA+TGG | - | chr5.4:61847520-61847539 | None:intergenic | 30.0% | |
| CTTCTATATTGTGTTTCGAA+TGG | + | chr5.4:61849859-61849878 | MS.gene54163:intron | 30.0% | |
| GAAAGAAGATTCTGTATTTG+TGG | + | chr5.4:61851262-61851281 | MS.gene54163:CDS | 30.0% | |
| GGAAAATGTATGACATACAA+GGG | - | chr5.4:61848281-61848300 | None:intergenic | 30.0% | |
| GTCATCAAAAGTTACTTGTA+AGG | + | chr5.4:61848695-61848714 | MS.gene54163:intron | 30.0% | |
| GTTCTTGTACATTCTTATCT+GGG | + | chr5.4:61847709-61847728 | MS.gene54163:intron | 30.0% | |
| GTTGTAATTGATCAGTGAAA+TGG | - | chr5.4:61847108-61847127 | None:intergenic | 30.0% | |
| TAATATAGACAAGATCTACC+TGG | - | chr5.4:61849729-61849748 | None:intergenic | 30.0% | |
| TACCATTAACTATGGTATGT+GGG | - | chr5.4:61848630-61848649 | None:intergenic | 30.0% | |
| TATATCACATTCTTGGTTGA+GGG | - | chr5.4:61846953-61846972 | None:intergenic | 30.0% | |
| TGATGAGTTATGTGATGAAT+GGG | + | chr5.4:61847769-61847788 | MS.gene54163:CDS | 30.0% | |
| TGCATATCTTTATCAAGAGA+AGG | - | chr5.4:61847812-61847831 | None:intergenic | 30.0% | |
| TGTACCAAAAATCTCTGTTT+GGG | + | chr5.4:61850377-61850396 | MS.gene54163:intron | 30.0% | |
| TGTCTGATGACATTTATGTT+GGG | + | chr5.4:61849122-61849141 | MS.gene54163:intron | 30.0% | |
| TTACCATTAACTATGGTATG+TGG | - | chr5.4:61848631-61848650 | None:intergenic | 30.0% | |
| TTATATCACATTCTTGGTTG+AGG | - | chr5.4:61846954-61846973 | None:intergenic | 30.0% | |
| TTATCAAGAGAAGGAATAAG+CGG | - | chr5.4:61847803-61847822 | None:intergenic | 30.0% | |
| TTGAGATTAAAGAAGTCAAC+GGG | + | chr5.4:61851117-61851136 | MS.gene54163:CDS | 30.0% | |
| TTGATGAGTTATGTGATGAA+TGG | + | chr5.4:61847768-61847787 | MS.gene54163:CDS | 30.0% | |
| TTGTCTGATGACATTTATGT+TGG | + | chr5.4:61849121-61849140 | MS.gene54163:intron | 30.0% | |
| ! | AAATAAACAATTGGTGACTC+TGG | - | chr5.4:61851099-61851118 | None:intergenic | 30.0% |
| ! | ACACTAATTTTCTTTATCGC+AGG | - | chr5.4:61848215-61848234 | None:intergenic | 30.0% |
| ! | ATTACAATGTTAGGGCTTTT+TGG | + | chr5.4:61846990-61847009 | MS.gene54163:intron | 30.0% |
| ! | ATTCCTGCTTTCTCTAAAAA+AGG | + | chr5.4:61849034-61849053 | MS.gene54163:CDS | 30.0% |
| ! | GGTGATTACATTTTATCTTG+TGG | + | chr5.4:61847855-61847874 | MS.gene54163:intron | 30.0% |
| ! | GTTTTATGGAACAATTGGTA+AGG | + | chr5.4:61848852-61848871 | MS.gene54163:intron | 30.0% |
| ! | TCTTTGTTTGTGATGCATTT+AGG | + | chr5.4:61846545-61846564 | MS.gene54163:CDS | 30.0% |
| !! | ATAAGATTGTTTGTTTCTGC+AGG | + | chr5.4:61851332-61851351 | MS.gene54163:CDS | 30.0% |
| !! | CAATTTTAATGTTTCTTCCG+GGG | - | chr5.4:61849223-61849242 | None:intergenic | 30.0% |
| !! | GTATTTTAAGCACAATGACA+TGG | + | chr5.4:61849615-61849634 | MS.gene54163:CDS | 30.0% |
| !! | TAAGATTGTTTGTTTCTGCA+GGG | + | chr5.4:61851333-61851352 | MS.gene54163:CDS | 30.0% |
| !! | TTGAATTTTTGTTGTCCTGA+TGG | - | chr5.4:61846712-61846731 | None:intergenic | 30.0% |
| !!! | CCATTTTTTTGAGATGTCAA+AGG | + | chr5.4:61847517-61847536 | MS.gene54163:intron | 30.0% |
| !!! | GTATTTTTTAACAGGGATGA+AGG | + | chr5.4:61849541-61849560 | MS.gene54163:intron | 30.0% |
| !!! | TAGTTCACTAGAAGTACTTT+TGG | + | chr5.4:61848405-61848424 | MS.gene54163:intron | 30.0% |
| !!! | TATTTTTAAGGCGAAGTGAT+TGG | + | chr5.4:61850652-61850671 | MS.gene54163:intron | 30.0% |
| !!! | TGGTTGTCTTCTAACTTTTT+TGG | + | chr5.4:61847644-61847663 | MS.gene54163:intron | 30.0% |
| AAAAATCTCTGTTTGGGTGT+GGG | + | chr5.4:61850383-61850402 | MS.gene54163:intron | 35.0% | |
| AAAATACACCAGAACAGCAT+TGG | + | chr5.4:61847048-61847067 | MS.gene54163:intron | 35.0% | |
| AAATACACCAGAACAGCATT+GGG | + | chr5.4:61847049-61847068 | MS.gene54163:intron | 35.0% | |
| AACAGCAAGATAGCAAATAG+AGG | - | chr5.4:61847202-61847221 | None:intergenic | 35.0% | |
| AACATTGCTGTGTTATGGAA+AGG | + | chr5.4:61850861-61850880 | MS.gene54163:CDS | 35.0% | |
| AATTGTTCCATAAAACCCAC+GGG | - | chr5.4:61848848-61848867 | None:intergenic | 35.0% | |
| ACAAGCACACCAAAAATTTG+AGG | + | chr5.4:61849677-61849696 | MS.gene54163:CDS | 35.0% | |
| ACAGCAAGATAGCAAATAGA+GGG | - | chr5.4:61847201-61847220 | None:intergenic | 35.0% | |
| AGAACAACATTGCTGTGTTA+TGG | + | chr5.4:61850856-61850875 | MS.gene54163:CDS | 35.0% | |
| AGAACTAACATGGAACACTA+TGG | - | chr5.4:61847694-61847713 | None:intergenic | 35.0% | |
| AGGCATCTGAATCATTGAAA+AGG | + | chr5.4:61851378-61851397 | MS.gene54163:CDS | 35.0% | |
| AGTCTCTTAACACTTCTTTC+TGG | - | chr5.4:61846775-61846794 | None:intergenic | 35.0% | |
| ATATCACATTCTTGGTTGAG+GGG | - | chr5.4:61846952-61846971 | None:intergenic | 35.0% | |
| ATATGGTGGTACTATTAGAC+TGG | + | chr5.4:61850039-61850058 | MS.gene54163:intron | 35.0% | |
| ATCTACCACTGTTATCAATC+CGG | - | chr5.4:61847263-61847282 | None:intergenic | 35.0% | |
| ATCTATAACTCTTGCACTTC+CGG | - | chr5.4:61850554-61850573 | None:intergenic | 35.0% | |
| ATCTTATTCCTACAGGCAAA+CGG | - | chr5.4:61851319-61851338 | None:intergenic | 35.0% | |
| CAATTGTTCCATAAAACCCA+CGG | - | chr5.4:61848849-61848868 | None:intergenic | 35.0% | |
| CCATAGTTATTGCAAGGTTA+AGG | + | chr5.4:61848095-61848114 | MS.gene54163:intron | 35.0% | |
| CCTTAACCTTGCAATAACTA+TGG | - | chr5.4:61848098-61848117 | None:intergenic | 35.0% | |
| CGGAAAATGTATGACATACA+AGG | - | chr5.4:61848282-61848301 | None:intergenic | 35.0% | |
| GAAAACCTACCAATATGCTA+GGG | - | chr5.4:61848057-61848076 | None:intergenic | 35.0% | |
| GAATGCATTAACGGTAAATC+TGG | - | chr5.4:61850423-61850442 | None:intergenic | 35.0% | |
| GGCATCTGAATCATTGAAAA+GGG | + | chr5.4:61851379-61851398 | MS.gene54163:CDS | 35.0% | |
| GTTATCAATCTCTTGGATAG+TGG | + | chr5.4:61846830-61846849 | MS.gene54163:intron | 35.0% | |
| GTTGAAAACACAGACATTAG+CGG | - | chr5.4:61850713-61850732 | None:intergenic | 35.0% | |
| TATCAATCCGGAATAGAAGA+CGG | - | chr5.4:61847251-61847270 | None:intergenic | 35.0% | |
| TCCATTTAAGAAAGTAGCAG+CGG | - | chr5.4:61850902-61850921 | None:intergenic | 35.0% | |
| TGATAACAGTGGTAGATAGT+GGG | + | chr5.4:61847266-61847285 | MS.gene54163:intron | 35.0% | |
| TTAAAGAACGACATTGCGAT+AGG | - | chr5.4:61850067-61850086 | None:intergenic | 35.0% | |
| TTTCCTCAGCAAACTATCTT+GGG | + | chr5.4:61848665-61848684 | MS.gene54163:CDS | 35.0% | |
| ! | ATTCTTATCTGGGATTCATC+AGG | + | chr5.4:61847719-61847738 | MS.gene54163:intron | 35.0% |
| ! | CAGTGCTTCTAGAAAGATAA+AGG | - | chr5.4:61849591-61849610 | None:intergenic | 35.0% |
| ! | CTTTTTCTTGAACACTGCTT+TGG | + | chr5.4:61848741-61848760 | MS.gene54163:intron | 35.0% |
| ! | TTGATAACAGTGGTAGATAG+TGG | + | chr5.4:61847265-61847284 | MS.gene54163:intron | 35.0% |
| ! | TTTCTTACTTTCGGTTTTGC+TGG | + | chr5.4:61851211-61851230 | MS.gene54163:intron | 35.0% |
| ! | TTTTCCTCAGCAAACTATCT+TGG | + | chr5.4:61848664-61848683 | MS.gene54163:CDS | 35.0% |
| !! | AAATATGGTGTTGGTTCATG+TGG | + | chr5.4:61848820-61848839 | MS.gene54163:CDS | 35.0% |
| !! | ACTTCTGCTCTAGAGAAATA+TGG | + | chr5.4:61848805-61848824 | MS.gene54163:CDS | 35.0% |
| !! | CAAAGGTGTCCAATGAAAAT+AGG | + | chr5.4:61847534-61847553 | MS.gene54163:intron | 35.0% |
| !! | CTATTTCTGGTGAGATAGTA+TGG | + | chr5.4:61849958-61849977 | MS.gene54163:intron | 35.0% |
| !! | GGCATTCATCTACTACTTTT+TGG | - | chr5.4:61847589-61847608 | None:intergenic | 35.0% |
| !! | GTTTTGATCATGAAAATGGG+TGG | - | chr5.4:61847621-61847640 | None:intergenic | 35.0% |
| !!! | CAGAGATTTTTGGTACATAC+TGG | - | chr5.4:61850374-61850393 | None:intergenic | 35.0% |
| !!! | TCTCCTTTTTTAGAGAAAGC+AGG | - | chr5.4:61849040-61849059 | None:intergenic | 35.0% |
| !!! | TCTTGCTGTTGCATTTTTTG+TGG | + | chr5.4:61847212-61847231 | MS.gene54163:intron | 35.0% |
| !!! | TGGATGGTTTTATTCAGATC+CGG | + | chr5.4:61849180-61849199 | MS.gene54163:intron | 35.0% |
| AAAACACAGACATTAGCGGA+GGG | - | chr5.4:61850709-61850728 | None:intergenic | 40.0% | |
| AAGTGTTAAGAGACTCACAG+TGG | + | chr5.4:61846780-61846799 | MS.gene54163:intron | 40.0% | |
| AATTTCTTATGCAGTGCTGC+TGG | + | chr5.4:61848604-61848623 | MS.gene54163:intron | 40.0% | |
| ACAAATGACACTACCATACC+TGG | - | chr5.4:61850579-61850598 | None:intergenic | 40.0% | |
| ACTATGGCTACCATGTAAGA+AGG | - | chr5.4:61848082-61848101 | None:intergenic | 40.0% | |
| ACTTGTCAACTTCACTGCTA+TGG | + | chr5.4:61847987-61848006 | MS.gene54163:intron | 40.0% | |
| AGATCTTATAACGGCTGCTA+TGG | + | chr5.4:61850495-61850514 | MS.gene54163:CDS | 40.0% | |
| ATCAATCCGGAATAGAAGAC+GGG | - | chr5.4:61847250-61847269 | None:intergenic | 40.0% | |
| ATTGTTCCATAAAACCCACG+GGG | - | chr5.4:61848847-61848866 | None:intergenic | 40.0% | |
| CAAAAATCTCTGTTTGGGTG+TGG | + | chr5.4:61850382-61850401 | MS.gene54163:intron | 40.0% | |
| CACAAATTGTGAGCATATGG+TGG | + | chr5.4:61850025-61850044 | MS.gene54163:intron | 40.0% | |
| CACAGCAATTCTTACACGTT+CGG | - | chr5.4:61851181-61851200 | None:intergenic | 40.0% | |
| CACAGTCAAGATGTACATCT+GGG | - | chr5.4:61848937-61848956 | None:intergenic | 40.0% | |
| CACTGCTATCTAATATGCCA+TGG | - | chr5.4:61846865-61846884 | None:intergenic | 40.0% | |
| CTATCTAATATGCCATGGTG+CGG | - | chr5.4:61846860-61846879 | None:intergenic | 40.0% | |
| GAGTTATAGATCACCAGGTA+TGG | + | chr5.4:61850563-61850582 | MS.gene54163:intron | 40.0% | |
| GATAGTAATAAAACCAGGGG+TGG | - | chr5.4:61849418-61849437 | None:intergenic | 40.0% | |
| GATCTTATAACGGCTGCTAT+GGG | + | chr5.4:61850496-61850515 | MS.gene54163:CDS | 40.0% | |
| GATTACAGTCGAAGTGTAAG+TGG | - | chr5.4:61847080-61847099 | None:intergenic | 40.0% | |
| GCAAACTATCTTGGGCTTAT+AGG | + | chr5.4:61848673-61848692 | MS.gene54163:CDS | 40.0% | |
| GCATTAACGGTAAATCTGGT+GGG | - | chr5.4:61850419-61850438 | None:intergenic | 40.0% | |
| GGAAAACCTACCAATATGCT+AGG | - | chr5.4:61848058-61848077 | None:intergenic | 40.0% | |
| GGTATAGACAATCACCCAAA+AGG | - | chr5.4:61846576-61846595 | None:intergenic | 40.0% | |
| GGTATCAAAAATCTTAGGGC+CGG | - | chr5.4:61849202-61849221 | None:intergenic | 40.0% | |
| TAGGATTACAGTTTGCACTC+TGG | + | chr5.4:61848490-61848509 | MS.gene54163:intron | 40.0% | |
| TCACAGTCAAGATGTACATC+TGG | - | chr5.4:61848938-61848957 | None:intergenic | 40.0% | |
| TGCAAGAGTTATAGATCACC+AGG | + | chr5.4:61850558-61850577 | MS.gene54163:CDS | 40.0% | |
| TGCATTAACGGTAAATCTGG+TGG | - | chr5.4:61850420-61850439 | None:intergenic | 40.0% | |
| TGGTAGCCATAGTTATTGCA+AGG | + | chr5.4:61848089-61848108 | MS.gene54163:intron | 40.0% | |
| TTCAGAGTCTGATCTTCACA+AGG | + | chr5.4:61851358-61851377 | MS.gene54163:CDS | 40.0% | |
| TTGCTGTGTTATGGAAAGGT+AGG | + | chr5.4:61850865-61850884 | MS.gene54163:intron | 40.0% | |
| TTGGATGAGAGCAACTCATT+TGG | + | chr5.4:61850302-61850321 | MS.gene54163:CDS | 40.0% | |
| TTGGGTGATTGTCTATACCA+AGG | + | chr5.4:61846577-61846596 | MS.gene54163:CDS | 40.0% | |
| ! | AGGTTTTCCACCTTCTTACA+TGG | + | chr5.4:61848069-61848088 | MS.gene54163:intron | 40.0% |
| ! | CACACCCAAACAGAGATTTT+TGG | - | chr5.4:61850384-61850403 | None:intergenic | 40.0% |
| ! | CCCTAAGATTTTTGATACCC+CGG | + | chr5.4:61849203-61849222 | MS.gene54163:intron | 40.0% |
| ! | CCGGGGTATCAAAAATCTTA+GGG | - | chr5.4:61849206-61849225 | None:intergenic | 40.0% |
| ! | CCTAGGGCAACATTTTCTTA+GGG | - | chr5.4:61849367-61849386 | None:intergenic | 40.0% |
| ! | CTAGGGCAACATTTTCTTAG+GGG | - | chr5.4:61849366-61849385 | None:intergenic | 40.0% |
| ! | CTATTCCGGATTGATAACAG+TGG | + | chr5.4:61847255-61847274 | MS.gene54163:intron | 40.0% |
| ! | TCCGGGGTATCAAAAATCTT+AGG | - | chr5.4:61849207-61849226 | None:intergenic | 40.0% |
| !! | ACCGCTGCTACTTTCTTAAA+TGG | + | chr5.4:61850898-61850917 | MS.gene54163:intron | 40.0% |
| !! | ATGTTAGGGCTTTTTGGTCT+TGG | + | chr5.4:61846996-61847015 | MS.gene54163:intron | 40.0% |
| !! | CAATATTTTCAAGCAGGCGT+AGG | - | chr5.4:61851158-61851177 | None:intergenic | 40.0% |
| !! | CGTGGGTTTTATGGAACAAT+TGG | + | chr5.4:61848847-61848866 | MS.gene54163:CDS | 40.0% |
| !! | GCTCTAGAGAAATATGGTGT+TGG | + | chr5.4:61848811-61848830 | MS.gene54163:CDS | 40.0% |
| !! | GTTCGGCAATATTTTCAAGC+AGG | - | chr5.4:61851164-61851183 | None:intergenic | 40.0% |
| AGAGAAGGAATAAGCGGTTG+TGG | - | chr5.4:61847797-61847816 | None:intergenic | 45.0% | |
| AGAGGTCTCACTGAACACTA+TGG | + | chr5.4:61850344-61850363 | MS.gene54163:CDS | 45.0% | |
| ATGAGCCCTAGCATATTGGT+AGG | + | chr5.4:61848049-61848068 | MS.gene54163:intron | 45.0% | |
| ATGGCTACCATGTAAGAAGG+TGG | - | chr5.4:61848079-61848098 | None:intergenic | 45.0% | |
| ATTGCAGCGCTTGCAAGATA+CGG | - | chr5.4:61850786-61850805 | None:intergenic | 45.0% | |
| CATCAAGTATGCAGTCGACA+TGG | - | chr5.4:61847446-61847465 | None:intergenic | 45.0% | |
| CCCTAAGAAAATGTTGCCCT+AGG | + | chr5.4:61849364-61849383 | MS.gene54163:intron | 45.0% | |
| GAAAACACAGACATTAGCGG+AGG | - | chr5.4:61850710-61850729 | None:intergenic | 45.0% | |
| GAAAATGGGTGGACAGACAA+AGG | - | chr5.4:61847610-61847629 | None:intergenic | 45.0% | |
| GGCCCACATACCATAGTTAA+TGG | + | chr5.4:61848625-61848644 | MS.gene54163:CDS | 45.0% | |
| TACAGTCGAAGTGTAAGTGG+AGG | - | chr5.4:61847077-61847096 | None:intergenic | 45.0% | |
| TAGACAATCACCCAAAAGGC+AGG | - | chr5.4:61846572-61846591 | None:intergenic | 45.0% | |
| TAGGATGAGCCCTAGCATAT+TGG | + | chr5.4:61848045-61848064 | MS.gene54163:intron | 45.0% | |
| TGGTGAACAAGCAGCTCTAT+GGG | - | chr5.4:61847569-61847588 | None:intergenic | 45.0% | |
| TGTTGTTGAAGCTCTCTACC+AGG | + | chr5.4:61849708-61849727 | MS.gene54163:CDS | 45.0% | |
| TTACAGCGATTGAGTAGCTC+TGG | + | chr5.4:61850735-61850754 | MS.gene54163:intron | 45.0% | |
| TTGGTGAACAAGCAGCTCTA+TGG | - | chr5.4:61847570-61847589 | None:intergenic | 45.0% | |
| TTGTGATGATTGAGGGAGAC+TGG | + | chr5.4:61848380-61848399 | MS.gene54163:intron | 45.0% | |
| TTTAGGGGTTGAGTCTACAG+AGG | - | chr5.4:61846638-61846657 | None:intergenic | 45.0% | |
| ! | AACACTATTGCTGCTTGCTC+TGG | + | chr5.4:61850087-61850106 | MS.gene54163:intron | 45.0% |
| ! | AGCAGGAATAGCACTGAACA+TGG | - | chr5.4:61849023-61849042 | None:intergenic | 45.0% |
| ! | AGGAATAGCACTGAACATGG+TGG | - | chr5.4:61849020-61849039 | None:intergenic | 45.0% |
| ! | GCCTAGGGCAACATTTTCTT+AGG | - | chr5.4:61849368-61849387 | None:intergenic | 45.0% |
| ! | TTTGGTGTGCTTGGAAGTTC+TGG | + | chr5.4:61850320-61850339 | MS.gene54163:CDS | 45.0% |
| !! | AAGCCCAAGATAGTTTGCTG+AGG | - | chr5.4:61848671-61848690 | None:intergenic | 45.0% |
| !! | AGCAACTCATTTGGTGTGCT+TGG | + | chr5.4:61850311-61850330 | MS.gene54163:CDS | 45.0% |
| !! | GAAATGCATTGGCTACTGCA+GGG | + | chr5.4:61851037-61851056 | MS.gene54163:intron | 45.0% |
| !! | GCATTTAGGACCTGCCTTTT+GGG | + | chr5.4:61846559-61846578 | MS.gene54163:CDS | 45.0% |
| !! | TGAAATGCATTGGCTACTGC+AGG | + | chr5.4:61851036-61851055 | MS.gene54163:intron | 45.0% |
| !! | TGCATTTAGGACCTGCCTTT+TGG | + | chr5.4:61846558-61846577 | MS.gene54163:CDS | 45.0% |
| !! | ATTAAGTAAAAATAATAATT+TGG | + | chr5.4:61849338-61849357 | MS.gene54163:intron | 5.0% |
| !!! | AAATTAAGAATTTATTTTTA+AGG | + | chr5.4:61850640-61850659 | MS.gene54163:intron | 5.0% |
| !!! | TATTTTTAAGTATATATTAT+AGG | - | chr5.4:61846684-61846703 | None:intergenic | 5.0% |
| ACAAGACTGCCGTTGTAGTG+GGG | - | chr5.4:61848145-61848164 | None:intergenic | 50.0% | |
| ACAGAAGGAGGATTCTGCAC+CGG | + | chr5.4:61850532-61850551 | MS.gene54163:CDS | 50.0% | |
| ACTACGCCCGTCTTCTATTC+CGG | + | chr5.4:61847241-61847260 | MS.gene54163:intron | 50.0% | |
| ATTGGCTACTGCAGGGTTGT+TGG | + | chr5.4:61851044-61851063 | MS.gene54163:intron | 50.0% | |
| CAAGATGTACATCTGGGCAG+AGG | - | chr5.4:61848931-61848950 | None:intergenic | 50.0% | |
| CACAAGACTGCCGTTGTAGT+GGG | - | chr5.4:61848146-61848165 | None:intergenic | 50.0% | |
| GCAGGGTTGTTGGAAATACC+AGG | + | chr5.4:61851054-61851073 | MS.gene54163:intron | 50.0% | |
| GTCCACTGGGGAATACAGAA+TGG | + | chr5.4:61849565-61849584 | MS.gene54163:CDS | 50.0% | |
| TGATTGTGATCGTGTGCTGC+AGG | + | chr5.4:61850462-61850481 | MS.gene54163:intron | 50.0% | |
| TGTAATCACCTCTCCAGCAC+TGG | - | chr5.4:61847845-61847864 | None:intergenic | 50.0% | |
| ! | AAAACCAGGGGTGGCCTTAA+GGG | - | chr5.4:61849409-61849428 | None:intergenic | 50.0% |
| ! | TAAAACCAGGGGTGGCCTTA+AGG | - | chr5.4:61849410-61849429 | None:intergenic | 50.0% |
| !! | GTGCTTGGAAGTTCTGGAAG+AGG | + | chr5.4:61850326-61850345 | MS.gene54163:CDS | 50.0% |
| ACAGGGATGAAGGAGTCCAC+TGG | + | chr5.4:61849551-61849570 | MS.gene54163:intron | 55.0% | |
| AGGGATGAAGGAGTCCACTG+GGG | + | chr5.4:61849553-61849572 | MS.gene54163:intron | 55.0% | |
| CAGGGATGAAGGAGTCCACT+GGG | + | chr5.4:61849552-61849571 | MS.gene54163:intron | 55.0% | |
| CTACCTGGACCCCACTACAA+CGG | + | chr5.4:61848133-61848152 | MS.gene54163:intron | 55.0% | |
| CTATAGCCTATGGCGGCTAG+GGG | - | chr5.4:61846929-61846948 | None:intergenic | 55.0% | |
| CTGTCAGTTCAGACCCTACC+TGG | + | chr5.4:61848118-61848137 | MS.gene54163:intron | 55.0% | |
| GCACAAGACTGCCGTTGTAG+TGG | - | chr5.4:61848147-61848166 | None:intergenic | 55.0% | |
| GCACTATGAACCACCAGTGC+TGG | + | chr5.4:61847829-61847848 | MS.gene54163:CDS | 55.0% | |
| GCTATAGCCTATGGCGGCTA+GGG | - | chr5.4:61846930-61846949 | None:intergenic | 55.0% | |
| GGAATAGAAGACGGGCGTAG+TGG | - | chr5.4:61847242-61847261 | None:intergenic | 55.0% | |
| GGCCATTCTGTATTCCCCAG+TGG | - | chr5.4:61849570-61849589 | None:intergenic | 55.0% | |
| GGTGCAGAATCCTCCTTCTG+TGG | - | chr5.4:61850533-61850552 | None:intergenic | 55.0% | |
| GGTTGAGGGGCTATAGCCTA+TGG | - | chr5.4:61846939-61846958 | None:intergenic | 55.0% | |
| TGACTCGCAATCGTGAAGCC+TGG | - | chr5.4:61851075-61851094 | None:intergenic | 55.0% | |
| TGAGGGGCTATAGCCTATGG+CGG | - | chr5.4:61846936-61846955 | None:intergenic | 55.0% | |
| TTGGTTCATGTGGTCCCCGT+GGG | + | chr5.4:61848830-61848849 | MS.gene54163:CDS | 55.0% | |
| ! | AATCACCTCTCCAGCACTGG+TGG | - | chr5.4:61847842-61847861 | None:intergenic | 55.0% |
| ! | ACAACGGCAGTCTTGTGCAC+TGG | + | chr5.4:61848149-61848168 | MS.gene54163:intron | 55.0% |
| ! | ATGAACCACCAGTGCTGGAG+AGG | + | chr5.4:61847834-61847853 | MS.gene54163:CDS | 55.0% |
| ! | GTTGTAGTGGGGTCCAGGTA+GGG | - | chr5.4:61848134-61848153 | None:intergenic | 55.0% |
| ! | TGTGGTCCCCGTGGGTTTTA+TGG | + | chr5.4:61848838-61848857 | MS.gene54163:CDS | 55.0% |
| !! | GACAAGTGCCGTTTGCCTGT+AGG | + | chr5.4:61851308-61851327 | MS.gene54163:CDS | 55.0% |
| GCAGCGCTTGCAAGATACGG+AGG | - | chr5.4:61850783-61850802 | None:intergenic | 60.0% | |
| GGAGGAGCCCAATGCTGTTC+TGG | - | chr5.4:61847059-61847078 | None:intergenic | 60.0% | |
| GGCTATAGCCTATGGCGGCT+AGG | - | chr5.4:61846931-61846950 | None:intergenic | 60.0% | |
| ! | CGTTGTAGTGGGGTCCAGGT+AGG | - | chr5.4:61848135-61848154 | None:intergenic | 60.0% |
| ! | GATAGTGGCTCACCGCACCA+TGG | + | chr5.4:61846845-61846864 | MS.gene54163:intron | 60.0% |
| ! | GTTGGTTCATGTGGTCCCCG+TGG | + | chr5.4:61848829-61848848 | MS.gene54163:CDS | 60.0% |
| AAGCAGCCCCTAGCCGCCAT+AGG | + | chr5.4:61846920-61846939 | MS.gene54163:CDS | 65.0% | |
| CTCACCCTTAAGGCCACCCC+TGG | + | chr5.4:61849402-61849421 | MS.gene54163:intron | 65.0% | |
| GCCTTAAGGGTGAGCGGGAG+GGG | - | chr5.4:61849396-61849415 | None:intergenic | 65.0% | |
| GGCCTTAAGGGTGAGCGGGA+GGG | - | chr5.4:61849397-61849416 | None:intergenic | 65.0% | |
| TATGGCGGCTAGGGGCTGCT+TGG | - | chr5.4:61846921-61846940 | None:intergenic | 65.0% | |
| TTAAGGGTGAGCGGGAGGGG+CGG | - | chr5.4:61849393-61849412 | None:intergenic | 65.0% | |
| ! | CTGCCGTTGTAGTGGGGTCC+AGG | - | chr5.4:61848139-61848158 | None:intergenic | 65.0% |
| ! | GGGGTGGCCTTAAGGGTGAG+CGG | - | chr5.4:61849402-61849421 | None:intergenic | 65.0% |
| ! | GGGTGGCCTTAAGGGTGAGC+GGG | - | chr5.4:61849401-61849420 | None:intergenic | 65.0% |
| ! | TGGCCTTAAGGGTGAGCGGG+AGG | - | chr5.4:61849398-61849417 | None:intergenic | 65.0% |
| GCCCCTCCCGCTCACCCTTA+AGG | + | chr5.4:61849392-61849411 | MS.gene54163:intron | 70.0% | |
| ! | AGCGGGAGGGGCGGCAGCCT+AGG | - | chr5.4:61849384-61849403 | None:intergenic | 80.0% |
| ! | GCGGGAGGGGCGGCAGCCTA+GGG | - | chr5.4:61849383-61849402 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 61846524 | 61851421 | 61846524 | ID=MS.gene54163 |
| chr5.4 | mRNA | 61846524 | 61851421 | 61846524 | ID=MS.gene54163.t1;Parent=MS.gene54163 |
| chr5.4 | exon | 61846524 | 61846620 | 61846524 | ID=MS.gene54163.t1.exon1;Parent=MS.gene54163.t1 |
| chr5.4 | CDS | 61846524 | 61846620 | 61846524 | ID=cds.MS.gene54163.t1;Parent=MS.gene54163.t1 |
| chr5.4 | exon | 61846876 | 61846964 | 61846876 | ID=MS.gene54163.t1.exon2;Parent=MS.gene54163.t1 |
| chr5.4 | CDS | 61846876 | 61846964 | 61846876 | ID=cds.MS.gene54163.t1;Parent=MS.gene54163.t1 |
| chr5.4 | exon | 61847764 | 61847855 | 61847764 | ID=MS.gene54163.t1.exon3;Parent=MS.gene54163.t1 |
| chr5.4 | CDS | 61847764 | 61847855 | 61847764 | ID=cds.MS.gene54163.t1;Parent=MS.gene54163.t1 |
| chr5.4 | exon | 61848618 | 61848711 | 61848618 | ID=MS.gene54163.t1.exon4;Parent=MS.gene54163.t1 |
| chr5.4 | CDS | 61848618 | 61848711 | 61848618 | ID=cds.MS.gene54163.t1;Parent=MS.gene54163.t1 |
| chr5.4 | exon | 61848796 | 61848868 | 61848796 | ID=MS.gene54163.t1.exon5;Parent=MS.gene54163.t1 |
| chr5.4 | CDS | 61848796 | 61848868 | 61848796 | ID=cds.MS.gene54163.t1;Parent=MS.gene54163.t1 |
| chr5.4 | exon | 61848939 | 61849071 | 61848939 | ID=MS.gene54163.t1.exon6;Parent=MS.gene54163.t1 |
| chr5.4 | CDS | 61848939 | 61849071 | 61848939 | ID=cds.MS.gene54163.t1;Parent=MS.gene54163.t1 |
| chr5.4 | exon | 61849555 | 61849729 | 61849555 | ID=MS.gene54163.t1.exon7;Parent=MS.gene54163.t1 |
| chr5.4 | CDS | 61849555 | 61849729 | 61849555 | ID=cds.MS.gene54163.t1;Parent=MS.gene54163.t1 |
| chr5.4 | exon | 61850233 | 61850373 | 61850233 | ID=MS.gene54163.t1.exon8;Parent=MS.gene54163.t1 |
| chr5.4 | CDS | 61850233 | 61850373 | 61850233 | ID=cds.MS.gene54163.t1;Parent=MS.gene54163.t1 |
| chr5.4 | exon | 61850484 | 61850579 | 61850484 | ID=MS.gene54163.t1.exon9;Parent=MS.gene54163.t1 |
| chr5.4 | CDS | 61850484 | 61850579 | 61850484 | ID=cds.MS.gene54163.t1;Parent=MS.gene54163.t1 |
| chr5.4 | exon | 61850741 | 61850882 | 61850741 | ID=MS.gene54163.t1.exon10;Parent=MS.gene54163.t1 |
| chr5.4 | CDS | 61850741 | 61850882 | 61850741 | ID=cds.MS.gene54163.t1;Parent=MS.gene54163.t1 |
| chr5.4 | exon | 61851058 | 61851185 | 61851058 | ID=MS.gene54163.t1.exon11;Parent=MS.gene54163.t1 |
| chr5.4 | CDS | 61851058 | 61851185 | 61851058 | ID=cds.MS.gene54163.t1;Parent=MS.gene54163.t1 |
| chr5.4 | exon | 61851257 | 61851421 | 61851257 | ID=MS.gene54163.t1.exon12;Parent=MS.gene54163.t1 |
| chr5.4 | CDS | 61851257 | 61851421 | 61851257 | ID=cds.MS.gene54163.t1;Parent=MS.gene54163.t1 |
| Gene Sequence |
| Protein sequence |
