Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067571.t1 | GAY33737.1 | 82.7 | 214 | 34 | 1 | 4 | 214 | 2 | 215 | 5.40E-96 | 360.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067571.t1 | Q9ZTW3 | 80.1 | 171 | 34 | 0 | 5 | 175 | 3 | 173 | 4.0e-76 | 285.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067571.t1 | A0A2H5N1D7 | 82.7 | 214 | 34 | 1 | 4 | 214 | 2 | 215 | 3.9e-96 | 360.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049129 | MS.gene067571 | -0.821069 | 4.91E-53 | -1.69E-46 |
MS.gene049140 | MS.gene067571 | 0.817369 | 3.42E-52 | -1.69E-46 |
MS.gene049235 | MS.gene067571 | -0.802779 | 4.77E-49 | -1.69E-46 |
MS.gene049411 | MS.gene067571 | 0.854777 | 9.82E-62 | -1.69E-46 |
MS.gene049580 | MS.gene067571 | 0.819217 | 1.30E-52 | -1.69E-46 |
MS.gene049674 | MS.gene067571 | 0.818019 | 2.44E-52 | -1.69E-46 |
MS.gene049680 | MS.gene067571 | 0.838345 | 3.04E-57 | -1.69E-46 |
MS.gene05029 | MS.gene067571 | 0.835354 | 1.76E-56 | -1.69E-46 |
MS.gene050320 | MS.gene067571 | 0.813557 | 2.41E-51 | -1.69E-46 |
MS.gene050437 | MS.gene067571 | 0.803544 | 3.31E-49 | -1.69E-46 |
MS.gene050646 | MS.gene067571 | 0.817554 | 3.11E-52 | -1.69E-46 |
MS.gene050689 | MS.gene067571 | 0.800681 | 1.29E-48 | -1.69E-46 |
MS.gene050752 | MS.gene067571 | 0.901949 | 1.60E-78 | -1.69E-46 |
MS.gene050838 | MS.gene067571 | 0.827618 | 1.42E-54 | -1.69E-46 |
MS.gene050945 | MS.gene067571 | 0.834297 | 3.25E-56 | -1.69E-46 |
MS.gene050955 | MS.gene067571 | 0.877145 | 7.95E-69 | -1.69E-46 |
MS.gene051003 | MS.gene067571 | 0.854815 | 9.57E-62 | -1.69E-46 |
MS.gene051043 | MS.gene067571 | 0.821827 | 3.28E-53 | -1.69E-46 |
MS.gene051234 | MS.gene067571 | 0.857165 | 1.97E-62 | -1.69E-46 |
MS.gene051343 | MS.gene067571 | 0.834705 | 2.57E-56 | -1.69E-46 |
MS.gene051642 | MS.gene067571 | 0.805831 | 1.10E-49 | -1.69E-46 |
MS.gene051676 | MS.gene067571 | 0.816495 | 5.37E-52 | -1.69E-46 |
MS.gene051746 | MS.gene067571 | 0.818221 | 2.19E-52 | -1.69E-46 |
MS.gene051748 | MS.gene067571 | 0.826009 | 3.43E-54 | -1.69E-46 |
MS.gene051756 | MS.gene067571 | 0.811997 | 5.29E-51 | -1.69E-46 |
MS.gene051902 | MS.gene067571 | 0.81854 | 1.86E-52 | -1.69E-46 |
MS.gene051903 | MS.gene067571 | 0.837927 | 3.89E-57 | -1.69E-46 |
MS.gene051975 | MS.gene067571 | 0.822849 | 1.90E-53 | -1.69E-46 |
MS.gene052072 | MS.gene067571 | 0.863377 | 2.60E-64 | -1.69E-46 |
MS.gene052296 | MS.gene067571 | 0.853742 | 1.95E-61 | -1.69E-46 |
MS.gene052370 | MS.gene067571 | 0.813627 | 2.33E-51 | -1.69E-46 |
MS.gene052479 | MS.gene067571 | 0.820741 | 5.84E-53 | -1.69E-46 |
MS.gene052793 | MS.gene067571 | 0.805024 | 1.63E-49 | -1.69E-46 |
MS.gene052818 | MS.gene067571 | -0.814467 | 1.52E-51 | -1.69E-46 |
MS.gene052947 | MS.gene067571 | 0.827594 | 1.44E-54 | -1.69E-46 |
MS.gene053058 | MS.gene067571 | 0.819323 | 1.23E-52 | -1.69E-46 |
MS.gene053109 | MS.gene067571 | 0.800209 | 1.60E-48 | -1.69E-46 |
MS.gene053564 | MS.gene067571 | 0.805837 | 1.10E-49 | -1.69E-46 |
MS.gene053879 | MS.gene067571 | 0.856442 | 3.21E-62 | -1.69E-46 |
MS.gene053952 | MS.gene067571 | 0.834628 | 2.68E-56 | -1.69E-46 |
MS.gene054004 | MS.gene067571 | 0.829163 | 6.00E-55 | -1.69E-46 |
MS.gene054403 | MS.gene067571 | 0.902516 | 8.96E-79 | -1.69E-46 |
MS.gene054413 | MS.gene067571 | 0.839375 | 1.65E-57 | -1.69E-46 |
MS.gene05469 | MS.gene067571 | 0.865434 | 5.92E-65 | -1.69E-46 |
MS.gene055162 | MS.gene067571 | 0.804552 | 2.04E-49 | -1.69E-46 |
MS.gene056986 | MS.gene067571 | 0.84123 | 5.39E-58 | -1.69E-46 |
MS.gene057094 | MS.gene067571 | 0.810173 | 1.31E-50 | -1.69E-46 |
MS.gene057102 | MS.gene067571 | 0.830385 | 3.03E-55 | -1.69E-46 |
MS.gene057130 | MS.gene067571 | 0.82859 | 8.26E-55 | -1.69E-46 |
MS.gene057234 | MS.gene067571 | 0.839024 | 2.03E-57 | -1.69E-46 |
MS.gene057694 | MS.gene067571 | 0.804522 | 2.07E-49 | -1.69E-46 |
MS.gene057705 | MS.gene067571 | 0.833859 | 4.19E-56 | -1.69E-46 |
MS.gene05781 | MS.gene067571 | 0.848267 | 6.83E-60 | -1.69E-46 |
MS.gene057999 | MS.gene067571 | 0.86595 | 4.07E-65 | -1.69E-46 |
MS.gene058054 | MS.gene067571 | 0.81127 | 7.61E-51 | -1.69E-46 |
MS.gene058055 | MS.gene067571 | 0.810667 | 1.03E-50 | -1.69E-46 |
MS.gene058074 | MS.gene067571 | 0.835568 | 1.56E-56 | -1.69E-46 |
MS.gene058245 | MS.gene067571 | 0.803244 | 3.82E-49 | -1.69E-46 |
MS.gene059146 | MS.gene067571 | 0.85981 | 3.20E-63 | -1.69E-46 |
MS.gene059227 | MS.gene067571 | 0.834933 | 2.25E-56 | -1.69E-46 |
MS.gene059360 | MS.gene067571 | 0.800271 | 1.56E-48 | -1.69E-46 |
MS.gene059590 | MS.gene067571 | 0.812371 | 4.38E-51 | -1.69E-46 |
MS.gene059802 | MS.gene067571 | 0.831289 | 1.82E-55 | -1.69E-46 |
MS.gene06011 | MS.gene067571 | 0.838322 | 3.08E-57 | -1.69E-46 |
MS.gene060763 | MS.gene067571 | 0.860854 | 1.55E-63 | -1.69E-46 |
MS.gene060935 | MS.gene067571 | 0.809618 | 1.73E-50 | -1.69E-46 |
MS.gene060937 | MS.gene067571 | 0.815546 | 8.75E-52 | -1.69E-46 |
MS.gene06118 | MS.gene067571 | 0.833136 | 6.34E-56 | -1.69E-46 |
MS.gene061243 | MS.gene067571 | 0.800638 | 1.31E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067571.t1 | MTR_4g083490 | 100.000 | 175 | 0 | 0 | 1 | 175 | 1 | 175 | 1.54e-130 | 366 |
MS.gene067571.t1 | MTR_2g028790 | 90.751 | 173 | 16 | 0 | 3 | 175 | 5 | 177 | 1.74e-119 | 338 |
MS.gene067571.t1 | MTR_4g022570 | 73.057 | 193 | 48 | 1 | 5 | 197 | 3 | 191 | 2.99e-106 | 305 |
MS.gene067571.t1 | MTR_1g047720 | 75.543 | 184 | 41 | 1 | 5 | 188 | 3 | 182 | 1.45e-105 | 303 |
MS.gene067571.t1 | MTR_7g058900 | 75.275 | 182 | 39 | 1 | 5 | 180 | 3 | 184 | 2.17e-101 | 293 |
MS.gene067571.t1 | MTR_7g058640 | 68.421 | 171 | 54 | 0 | 5 | 175 | 3 | 173 | 4.07e-88 | 259 |
MS.gene067571.t1 | MTR_2g436870 | 61.340 | 194 | 71 | 1 | 4 | 197 | 2 | 191 | 6.20e-88 | 259 |
MS.gene067571.t1 | MTR_7g058640 | 67.836 | 171 | 55 | 0 | 5 | 175 | 3 | 173 | 1.66e-87 | 256 |
MS.gene067571.t1 | MTR_1g111890 | 53.991 | 213 | 76 | 3 | 4 | 194 | 2 | 214 | 2.68e-81 | 243 |
MS.gene067571.t1 | MTR_1g047710 | 74.167 | 120 | 27 | 1 | 66 | 185 | 12 | 127 | 1.96e-61 | 188 |
MS.gene067571.t1 | MTR_4g022470 | 79.439 | 107 | 22 | 0 | 66 | 172 | 10 | 116 | 9.73e-59 | 181 |
MS.gene067571.t1 | MTR_7g058640 | 71.579 | 95 | 27 | 0 | 81 | 175 | 1 | 95 | 1.11e-45 | 148 |
MS.gene067571.t1 | MTR_5g089370 | 39.759 | 166 | 97 | 3 | 8 | 172 | 3 | 166 | 9.09e-38 | 131 |
MS.gene067571.t1 | MTR_4g052550 | 35.119 | 168 | 104 | 4 | 7 | 172 | 2 | 166 | 1.22e-35 | 125 |
MS.gene067571.t1 | MTR_4g115390 | 32.941 | 170 | 107 | 3 | 8 | 172 | 3 | 170 | 4.99e-29 | 108 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067571.t1 | AT1G04760 | 74.611 | 193 | 45 | 1 | 5 | 197 | 3 | 191 | 2.93e-106 | 305 |
MS.gene067571.t1 | AT1G04760 | 74.611 | 193 | 45 | 1 | 5 | 197 | 3 | 191 | 2.93e-106 | 305 |
MS.gene067571.t1 | AT2G33120 | 77.717 | 184 | 37 | 1 | 5 | 188 | 3 | 182 | 1.13e-105 | 303 |
MS.gene067571.t1 | AT2G32670 | 74.093 | 193 | 46 | 1 | 5 | 197 | 68 | 256 | 3.16e-105 | 305 |
MS.gene067571.t1 | AT1G04750 | 76.087 | 184 | 40 | 1 | 5 | 188 | 3 | 182 | 1.26e-103 | 298 |
MS.gene067571.t1 | AT2G33120 | 73.958 | 192 | 38 | 2 | 5 | 188 | 3 | 190 | 4.96e-102 | 295 |
MS.gene067571.t1 | AT4G15780 | 68.023 | 172 | 54 | 1 | 5 | 175 | 3 | 174 | 7.72e-87 | 254 |
MS.gene067571.t1 | AT2G33110 | 68.750 | 160 | 50 | 0 | 5 | 164 | 3 | 162 | 1.98e-81 | 241 |
MS.gene067571.t1 | AT3G54300 | 59.896 | 192 | 56 | 2 | 4 | 175 | 2 | 192 | 2.81e-81 | 243 |
MS.gene067571.t1 | AT3G54300 | 59.896 | 192 | 56 | 2 | 4 | 175 | 2 | 192 | 2.81e-81 | 243 |
MS.gene067571.t1 | AT3G54300 | 59.896 | 192 | 56 | 2 | 4 | 175 | 2 | 192 | 2.81e-81 | 243 |
MS.gene067571.t1 | AT2G33110 | 68.750 | 160 | 50 | 0 | 5 | 164 | 3 | 162 | 1.19e-80 | 240 |
MS.gene067571.t1 | AT1G04750 | 84.211 | 95 | 15 | 0 | 81 | 175 | 1 | 95 | 2.74e-53 | 168 |
MS.gene067571.t1 | AT1G04750 | 84.211 | 95 | 15 | 0 | 81 | 175 | 1 | 95 | 2.74e-53 | 168 |
MS.gene067571.t1 | AT1G04750 | 84.211 | 95 | 15 | 0 | 81 | 175 | 1 | 95 | 2.74e-53 | 168 |
MS.gene067571.t1 | AT5G11150 | 42.262 | 168 | 93 | 3 | 7 | 172 | 2 | 167 | 1.10e-40 | 138 |
MS.gene067571.t1 | AT5G11150 | 42.262 | 168 | 93 | 3 | 7 | 172 | 2 | 167 | 2.36e-40 | 138 |
MS.gene067571.t1 | AT4G32150 | 41.317 | 167 | 95 | 3 | 7 | 172 | 2 | 166 | 4.23e-40 | 137 |
MS.gene067571.t1 | AT5G22360 | 36.686 | 169 | 101 | 4 | 7 | 172 | 2 | 167 | 3.99e-35 | 124 |
MS.gene067571.t1 | AT2G25340 | 37.725 | 167 | 101 | 3 | 7 | 172 | 2 | 166 | 5.17e-35 | 124 |
MS.gene067571.t1 | AT2G33120 | 67.188 | 64 | 17 | 1 | 125 | 188 | 41 | 100 | 5.81e-19 | 80.1 |
MS.gene067571.t1 | AT3G24890 | 60.000 | 55 | 22 | 0 | 112 | 166 | 11 | 65 | 4.95e-16 | 70.5 |
MS.gene067571.t1 | AT3G24890 | 60.000 | 55 | 22 | 0 | 112 | 166 | 11 | 65 | 4.95e-16 | 70.5 |
MS.gene067571.t1 | AT3G24890 | 60.000 | 55 | 22 | 0 | 112 | 166 | 11 | 65 | 4.95e-16 | 70.5 |
MS.gene067571.t1 | AT3G24890 | 60.000 | 55 | 22 | 0 | 112 | 166 | 11 | 65 | 4.95e-16 | 70.5 |
MS.gene067571.t1 | AT3G24890 | 63.462 | 52 | 19 | 0 | 115 | 166 | 14 | 65 | 6.88e-16 | 71.6 |
Find 51 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCATATGTTCCTTCAATTT+TGG | 0.127814 | 4.1:-24172274 | None:intergenic |
AACAGCTTGAATAAGGAATT+TGG | 0.135464 | 4.1:+24172149 | MS.gene067571:CDS |
TTCAATTACCTCGTCGATAA+TGG | 0.314519 | 4.1:+24171725 | MS.gene067571:CDS |
TGCACCTAACAGCTTGAATA+AGG | 0.338054 | 4.1:+24172142 | MS.gene067571:CDS |
GTGAATTTGTTGTTAGAAGC+TGG | 0.366183 | 4.1:-24171680 | None:intergenic |
TGAGGCAGGCACAAGACTTC+AGG | 0.377030 | 4.1:+24178701 | MS.gene067571:intron |
ACAGCTTGAATAAGGAATTT+GGG | 0.392757 | 4.1:+24172150 | MS.gene067571:CDS |
GCAAGCTTACTCACCTCCTC+CGG | 0.394354 | 4.1:-24172313 | None:intergenic |
GTTGAAGTTTCCGCTGAATT+CGG | 0.415620 | 4.1:-24171627 | None:intergenic |
AATTCCTTATTCAAGCTGTT+AGG | 0.425518 | 4.1:-24172146 | None:intergenic |
GAAGATAAAGCTGATTGTAT+TGG | 0.457650 | 4.1:+24178768 | MS.gene067571:CDS |
TATTTATTCTTAAGAACGAT+TGG | 0.463535 | 4.1:-24178826 | None:intergenic |
TTGTGGCAGGCCAAAATTGA+AGG | 0.466510 | 4.1:+24172264 | MS.gene067571:intron |
ATTTATTCTTAAGAACGATT+GGG | 0.491549 | 4.1:-24178825 | None:intergenic |
ACTTGATGTAGGTCCTGGAC+AGG | 0.498294 | 4.1:+24178381 | MS.gene067571:intron |
AATTACTAACCTGGTGATGA+AGG | 0.503755 | 4.1:-24178442 | None:intergenic |
CATGATGGAGAATATTGAAA+AGG | 0.507884 | 4.1:+24172372 | MS.gene067571:CDS |
TTGTGTTGTTGCGGATGAAA+CGG | 0.512801 | 4.1:+24172034 | MS.gene067571:CDS |
GCACAAGACTTCAGGAACTC+AGG | 0.526353 | 4.1:+24178709 | MS.gene067571:CDS |
CTTGATGTAGGTCCTGGACA+GGG | 0.526403 | 4.1:+24178382 | MS.gene067571:intron |
CGATTGGGAGGACAATTATG+AGG | 0.534617 | 4.1:-24178810 | None:intergenic |
GCTTGCTAAGGTGAAGGCTC+AGG | 0.546240 | 4.1:+24172330 | MS.gene067571:CDS |
CAAGCTTACTCACCTCCTCC+GGG | 0.549863 | 4.1:-24172312 | None:intergenic |
AACGGTTGGAAGACAAGTGC+CGG | 0.560243 | 4.1:+24172052 | MS.gene067571:CDS |
TTTGTTGCGAAATATGGTGG+TGG | 0.569761 | 4.1:+24172104 | MS.gene067571:CDS |
CTGAAGGCATTGAAAAGCGA+TGG | 0.572755 | 4.1:-24171651 | None:intergenic |
ATTATCGACGAGGTAATTGA+AGG | 0.574959 | 4.1:-24171723 | None:intergenic |
AAATTCACTTACAATTGTGA+TGG | 0.582315 | 4.1:+24171695 | MS.gene067571:CDS |
TGATGTAGGTCCTGGACAGG+GGG | 0.582640 | 4.1:+24178384 | MS.gene067571:intron |
TTGTGTTGATCACCCGGAGG+AGG | 0.583937 | 4.1:+24172300 | MS.gene067571:CDS |
CACAAGACTTCAGGAACTCA+GGG | 0.588787 | 4.1:+24178710 | MS.gene067571:CDS |
GCAGTATTGTGTTGATCACC+CGG | 0.590880 | 4.1:+24172294 | MS.gene067571:CDS |
TAGAAGCTGGAAGCTTCTGA+AGG | 0.592334 | 4.1:-24171667 | None:intergenic |
GACTGAGAACCTTCATCACC+AGG | 0.596496 | 4.1:+24178433 | MS.gene067571:CDS |
GAGTAAGCTTGCTAAGGTGA+AGG | 0.597551 | 4.1:+24172324 | MS.gene067571:CDS |
TTGATGTAGGTCCTGGACAG+GGG | 0.598139 | 4.1:+24178383 | MS.gene067571:intron |
TTGTTGCGAAATATGGTGGT+GGG | 0.599780 | 4.1:+24172105 | MS.gene067571:CDS |
TGAAGTGAAAGGTGTCATGA+TGG | 0.602006 | 4.1:+24172357 | MS.gene067571:CDS |
GGAGGTGAGTAAGCTTGCTA+AGG | 0.602293 | 4.1:+24172318 | MS.gene067571:CDS |
TATTCTTAAGAACGATTGGG+AGG | 0.607627 | 4.1:-24178822 | None:intergenic |
GTTGTTGCGGATGAAACGGT+TGG | 0.620353 | 4.1:+24172038 | MS.gene067571:CDS |
GCTCAGGTGTCTGAAGTGAA+AGG | 0.620623 | 4.1:+24172346 | MS.gene067571:CDS |
TGTAGCGTATTGTGTTGTTG+CGG | 0.643271 | 4.1:+24172025 | MS.gene067571:intron |
TGCGAAATATGGTGGTGGGA+AGG | 0.648574 | 4.1:+24172109 | MS.gene067571:CDS |
TCTGAATACACCGAATTCAG+CGG | 0.660683 | 4.1:+24171617 | MS.gene067571:CDS |
ATCTACGCTTTCGTTTCTCG+CGG | 0.661937 | 4.1:+24171581 | MS.gene067571:CDS |
GGTTGGAAGACAAGTGCCGG+TGG | 0.663656 | 4.1:+24172055 | MS.gene067571:CDS |
ACACGTTCCAGAAAAGCCAC+CGG | 0.669559 | 4.1:-24172071 | None:intergenic |
GATGTAGGTCCTGGACAGGG+GGG | 0.679259 | 4.1:+24178385 | MS.gene067571:intron |
AACTGTAGCCATTATCGACG+AGG | 0.726012 | 4.1:-24171733 | None:intergenic |
GTATTGTGTTGATCACCCGG+AGG | 0.776651 | 4.1:+24172297 | MS.gene067571:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 24171557 | 24178839 | 24171557 | ID=MS.gene067571 |
chr4.1 | mRNA | 24171557 | 24178839 | 24171557 | ID=MS.gene067571.t1;Parent=MS.gene067571 |
chr4.1 | exon | 24171557 | 24171752 | 24171557 | ID=MS.gene067571.t1.exon1;Parent=MS.gene067571.t1 |
chr4.1 | CDS | 24171557 | 24171752 | 24171557 | ID=cds.MS.gene067571.t1;Parent=MS.gene067571.t1 |
chr4.1 | exon | 24172030 | 24172171 | 24172030 | ID=MS.gene067571.t1.exon2;Parent=MS.gene067571.t1 |
chr4.1 | CDS | 24172030 | 24172171 | 24172030 | ID=cds.MS.gene067571.t1;Parent=MS.gene067571.t1 |
chr4.1 | exon | 24172273 | 24172393 | 24172273 | ID=MS.gene067571.t1.exon3;Parent=MS.gene067571.t1 |
chr4.1 | CDS | 24172273 | 24172393 | 24172273 | ID=cds.MS.gene067571.t1;Parent=MS.gene067571.t1 |
chr4.1 | exon | 24178392 | 24178454 | 24178392 | ID=MS.gene067571.t1.exon4;Parent=MS.gene067571.t1 |
chr4.1 | CDS | 24178392 | 24178454 | 24178392 | ID=cds.MS.gene067571.t1;Parent=MS.gene067571.t1 |
chr4.1 | exon | 24178705 | 24178839 | 24178705 | ID=MS.gene067571.t1.exon5;Parent=MS.gene067571.t1 |
chr4.1 | CDS | 24178705 | 24178839 | 24178705 | ID=cds.MS.gene067571.t1;Parent=MS.gene067571.t1 |
Gene Sequence |
Protein sequence |