Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27943.t1 | BAU98053.1 | 96.6 | 358 | 12 | 0 | 1 | 358 | 1 | 358 | 4.50E-193 | 683.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27943.t1 | P07730 | 22.6 | 389 | 213 | 9 | 35 | 338 | 80 | 465 | 5.0e-23 | 110.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27943.t1 | A0A161JQR4 | 96.6 | 358 | 12 | 0 | 1 | 358 | 1 | 358 | 3.3e-193 | 683.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050082 | MS.gene27943 | 0.8468 | 1.73E-59 | -1.69E-46 |
| MS.gene050338 | MS.gene27943 | 0.854302 | 1.35E-61 | -1.69E-46 |
| MS.gene050521 | MS.gene27943 | 0.801246 | 9.86E-49 | -1.69E-46 |
| MS.gene051364 | MS.gene27943 | 0.819447 | 1.16E-52 | -1.69E-46 |
| MS.gene051366 | MS.gene27943 | 0.822832 | 1.92E-53 | -1.69E-46 |
| MS.gene051367 | MS.gene27943 | 0.832692 | 8.18E-56 | -1.69E-46 |
| MS.gene051422 | MS.gene27943 | 0.835472 | 1.65E-56 | -1.69E-46 |
| MS.gene051648 | MS.gene27943 | 0.804001 | 2.66E-49 | -1.69E-46 |
| MS.gene051718 | MS.gene27943 | 0.863358 | 2.64E-64 | -1.69E-46 |
| MS.gene052383 | MS.gene27943 | 0.822194 | 2.70E-53 | -1.69E-46 |
| MS.gene052707 | MS.gene27943 | 0.816473 | 5.43E-52 | -1.69E-46 |
| MS.gene052708 | MS.gene27943 | 0.818692 | 1.72E-52 | -1.69E-46 |
| MS.gene052710 | MS.gene27943 | 0.836461 | 9.23E-57 | -1.69E-46 |
| MS.gene055251 | MS.gene27943 | 0.852443 | 4.60E-61 | -1.69E-46 |
| MS.gene056856 | MS.gene27943 | 0.829778 | 4.26E-55 | -1.69E-46 |
| MS.gene058015 | MS.gene27943 | 0.816937 | 4.27E-52 | -1.69E-46 |
| MS.gene058334 | MS.gene27943 | 0.802569 | 5.27E-49 | -1.69E-46 |
| MS.gene058382 | MS.gene27943 | 0.861508 | 9.77E-64 | -1.69E-46 |
| MS.gene058386 | MS.gene27943 | 0.828189 | 1.03E-54 | -1.69E-46 |
| MS.gene059685 | MS.gene27943 | 0.809025 | 2.32E-50 | -1.69E-46 |
| MS.gene060561 | MS.gene27943 | 0.811016 | 8.64E-51 | -1.69E-46 |
| MS.gene060823 | MS.gene27943 | 0.83552 | 1.60E-56 | -1.69E-46 |
| MS.gene061044 | MS.gene27943 | 0.811647 | 6.30E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27943.t1 | MTR_8g088860 | 94.150 | 359 | 20 | 1 | 1 | 358 | 1 | 359 | 0.0 | 675 |
| MS.gene27943.t1 | MTR_8g088880 | 84.637 | 358 | 55 | 0 | 1 | 358 | 1 | 358 | 0.0 | 603 |
| MS.gene27943.t1 | MTR_8g088890 | 71.477 | 298 | 85 | 0 | 31 | 328 | 3 | 300 | 1.23e-152 | 432 |
| MS.gene27943.t1 | MTR_4g062570 | 41.292 | 356 | 207 | 2 | 1 | 356 | 1 | 354 | 1.09e-101 | 304 |
| MS.gene27943.t1 | MTR_4g072780 | 41.011 | 356 | 208 | 2 | 1 | 356 | 1 | 354 | 1.46e-100 | 301 |
| MS.gene27943.t1 | MTR_4g062550 | 40.730 | 356 | 209 | 2 | 1 | 356 | 1 | 354 | 4.28e-100 | 300 |
| MS.gene27943.t1 | MTR_4g032360 | 41.011 | 356 | 208 | 2 | 1 | 356 | 1 | 354 | 7.44e-100 | 300 |
| MS.gene27943.t1 | MTR_5g022720 | 33.721 | 258 | 139 | 4 | 96 | 348 | 33 | 263 | 1.94e-40 | 144 |
| MS.gene27943.t1 | MTR_4g076710 | 74.419 | 43 | 11 | 0 | 73 | 115 | 1 | 43 | 5.04e-17 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27943.t1 | AT1G07750 | 40.563 | 355 | 207 | 3 | 1 | 355 | 1 | 351 | 2.98e-95 | 288 |
| MS.gene27943.t1 | AT2G28680 | 40.336 | 357 | 211 | 2 | 1 | 357 | 1 | 355 | 9.12e-95 | 286 |
| MS.gene27943.t1 | AT1G03890 | 24.679 | 389 | 223 | 13 | 32 | 357 | 67 | 448 | 1.70e-19 | 89.7 |
| MS.gene27943.t1 | AT2G28490 | 22.782 | 417 | 244 | 14 | 8 | 357 | 89 | 494 | 1.68e-17 | 84.0 |
| MS.gene27943.t1 | AT1G03880 | 21.975 | 405 | 244 | 10 | 13 | 351 | 43 | 441 | 3.82e-17 | 82.8 |
| MS.gene27943.t1 | AT5G44120 | 22.705 | 414 | 237 | 14 | 13 | 351 | 49 | 454 | 2.04e-16 | 80.5 |
| MS.gene27943.t1 | AT5G44120 | 32.653 | 147 | 96 | 2 | 206 | 351 | 123 | 267 | 1.76e-13 | 70.5 |
| MS.gene27943.t1 | AT5G44120 | 32.653 | 147 | 96 | 2 | 206 | 351 | 206 | 350 | 3.54e-13 | 70.5 |
| MS.gene27943.t1 | AT4G28520 | 30.612 | 147 | 101 | 1 | 205 | 351 | 289 | 434 | 1.45e-12 | 68.9 |
| MS.gene27943.t1 | AT4G28520 | 30.612 | 147 | 101 | 1 | 205 | 351 | 360 | 505 | 1.72e-12 | 68.9 |
Find 79 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTTAACATTATATTTCT+TGG | 0.148846 | 4.4:-12196709 | MS.gene27943:CDS |
| TCGTGACTAATCCCACATTT+TGG | 0.192541 | 4.4:+12196425 | None:intergenic |
| ACTTGAACCTAATGCTATTA+AGG | 0.231472 | 4.4:-12196341 | MS.gene27943:CDS |
| AACCCAACATCCTTAATAAA+AGG | 0.256810 | 4.4:+12196382 | None:intergenic |
| TGTTGGGTTAAGTGTGATTA+GGG | 0.277054 | 4.4:-12196368 | MS.gene27943:CDS |
| AAGCTAACACAAAGCCAAAA+AGG | 0.292183 | 4.4:-12196556 | MS.gene27943:CDS |
| ATGTTGGGTTAAGTGTGATT+AGG | 0.298094 | 4.4:-12196369 | MS.gene27943:CDS |
| TGCTAAAACACCATATATTA+AGG | 0.317069 | 4.4:-12196449 | MS.gene27943:CDS |
| AGTTTAATCAAATATGGATT+TGG | 0.320782 | 4.4:-12197276 | None:intergenic |
| TATAAACAAGTCAAACTAAA+TGG | 0.330642 | 4.4:+12195704 | None:intergenic |
| GTGATAATCAAGTTAGAAAA+AGG | 0.339715 | 4.4:-12196529 | MS.gene27943:CDS |
| AGGAAAATCTTTATCCGTTA+AGG | 0.342094 | 4.4:+12196402 | None:intergenic |
| TACCTATTGGAGGTGTTTCA+TGG | 0.356456 | 4.4:-12196753 | MS.gene27943:CDS |
| ACTGAATCCCAGGGGTAGTT+AGG | 0.358988 | 4.4:+12196308 | None:intergenic |
| ATGGTGGTGGTTACTACATT+TGG | 0.379198 | 4.4:-12197214 | MS.gene27943:CDS |
| ATAGAAATTGTGGGATTGAA+TGG | 0.390973 | 4.4:-12196256 | MS.gene27943:CDS |
| GAAGGTGCCTTAATAGCATT+AGG | 0.400052 | 4.4:+12196334 | None:intergenic |
| CATAAACAAAGTCTTTAGTT+AGG | 0.401436 | 4.4:+12196479 | None:intergenic |
| ACTTCAATAGCTCATGTTCC+AGG | 0.412111 | 4.4:-12196682 | MS.gene27943:CDS |
| ATTTACATTGCTAGAGGAAG+TGG | 0.419131 | 4.4:-12196283 | MS.gene27943:CDS |
| GCTAAAGTTGCTGGTGAAGA+AGG | 0.419914 | 4.4:-12196166 | MS.gene27943:CDS |
| ACCTATGCCTAAGCCACAAT+TGG | 0.420447 | 4.4:-12196503 | MS.gene27943:CDS |
| AAGTTCTCAAGTTCAAGTTT+TGG | 0.426929 | 4.4:-12197189 | MS.gene27943:CDS |
| TAGCCGGAGAGACATCAGTA+TGG | 0.435918 | 4.4:-12195833 | MS.gene27943:CDS |
| CCAGGGGTAGTTAGGTTTGA+AGG | 0.446656 | 4.4:+12196316 | None:intergenic |
| GTTAGGTCCAATTGTGGCTT+AGG | 0.462868 | 4.4:+12196496 | None:intergenic |
| CCTTCAAACCTAACTACCCC+TGG | 0.463501 | 4.4:-12196316 | MS.gene27943:CDS |
| GTCAACTTGTTCTTCAGCCA+AGG | 0.466314 | 4.4:-12197145 | MS.gene27943:CDS |
| AGCAATGGTTGTGCTGTCTT+CGG | 0.471177 | 4.4:+12197245 | None:intergenic |
| GATGTCATACCTGTACCTAT+TGG | 0.485348 | 4.4:-12196766 | MS.gene27943:CDS |
| GCAGGGACTGATGGTGTAGT+TGG | 0.493416 | 4.4:-12196841 | MS.gene27943:intron |
| TGTCTTGGATGCTCAAGTTA+AGG | 0.494376 | 4.4:-12196227 | MS.gene27943:CDS |
| AAAGTGGGTTATGTCATAGA+AGG | 0.498483 | 4.4:-12197089 | MS.gene27943:intron |
| GGGATTAGTCACGACCTTAA+CGG | 0.507459 | 4.4:-12196416 | MS.gene27943:CDS |
| CACCATGAAACACCTCCAAT+AGG | 0.508936 | 4.4:+12196751 | None:intergenic |
| ATGTAAATCAACTGAATCCC+AGG | 0.510868 | 4.4:+12196298 | None:intergenic |
| AGCCGGAGAGACATCAGTAT+GGG | 0.531399 | 4.4:-12195832 | MS.gene27943:CDS |
| AACAAGTCAAACTAAATGGT+AGG | 0.531603 | 4.4:+12195708 | None:intergenic |
| AAAGACACTTGTTGCACAGT+AGG | 0.532747 | 4.4:+12195798 | None:intergenic |
| GTTTCATGGTGGTTCAATGA+TGG | 0.534589 | 4.4:-12196739 | MS.gene27943:CDS |
| CAACCATTGCTTGAGGGAGA+TGG | 0.544530 | 4.4:-12197233 | MS.gene27943:CDS |
| GCTAAGACCAATGTTGGTGC+TGG | 0.545292 | 4.4:-12197167 | MS.gene27943:CDS |
| TCAACTTGTTCTTCAGCCAA+GGG | 0.545644 | 4.4:-12197144 | MS.gene27943:CDS |
| ATTGAATGGAAAACGTGTCT+TGG | 0.545710 | 4.4:-12196242 | MS.gene27943:CDS |
| TTGGATGCTCAAGTTAAGGC+TGG | 0.552687 | 4.4:-12196223 | MS.gene27943:CDS |
| TTGTTCGAATCTGCATAATG+AGG | 0.553966 | 4.4:+12197110 | None:intergenic |
| CCTTTGTTTGAAGAGTTAGC+CGG | 0.556322 | 4.4:-12195849 | MS.gene27943:CDS |
| TTGGCAAACGCAGGGACTGA+TGG | 0.559734 | 4.4:-12196850 | MS.gene27943:intron |
| GTCATACCTGTACCTATTGG+AGG | 0.560557 | 4.4:-12196763 | MS.gene27943:CDS |
| TCCAATTGTGGCTTAGGCAT+AGG | 0.563240 | 4.4:+12196502 | None:intergenic |
| TTGCTTGAGGGAGATGGTGG+TGG | 0.563550 | 4.4:-12197227 | MS.gene27943:CDS |
| TCCCCATACTGATGTCTCTC+CGG | 0.565683 | 4.4:+12195830 | None:intergenic |
| ATATATTAAGGCCCAAAATG+TGG | 0.568201 | 4.4:-12196437 | MS.gene27943:CDS |
| ACAGCACAACCATTGCTTGA+GGG | 0.569100 | 4.4:-12197239 | MS.gene27943:CDS |
| AAAGTCCTTGAACACCACTT+AGG | 0.569759 | 4.4:+12196641 | None:intergenic |
| AGTTGCTGGTGAAGAAGGAA+TGG | 0.570497 | 4.4:-12196161 | MS.gene27943:CDS |
| GAAACACCTCCAATAGGTAC+AGG | 0.571470 | 4.4:+12196757 | None:intergenic |
| ACAAGTCAAACTAAATGGTA+GGG | 0.575189 | 4.4:+12195709 | None:intergenic |
| TCTTTAGTTAGGTCCAATTG+TGG | 0.584862 | 4.4:+12196490 | None:intergenic |
| TATATTAAGGCCCAAAATGT+GGG | 0.592612 | 4.4:-12196436 | MS.gene27943:CDS |
| CAGTTGATTTACATTGCTAG+AGG | 0.600562 | 4.4:-12196289 | MS.gene27943:CDS |
| CTTCAAACCTAACTACCCCT+GGG | 0.606286 | 4.4:-12196315 | MS.gene27943:CDS |
| CCACCATCTCCCTCAAGCAA+TGG | 0.609709 | 4.4:+12197230 | None:intergenic |
| GGAATGGTACTCCCCAGCAC+CGG | 0.611093 | 4.4:-12196820 | MS.gene27943:CDS |
| TGAGGAAGAGCAAATCCCCT+TGG | 0.612076 | 4.4:+12197128 | None:intergenic |
| TATGCAGATTCGAACAAAGT+GGG | 0.614043 | 4.4:-12197104 | MS.gene27943:CDS |
| GACTGATGGTGTAGTTGGAA+TGG | 0.615110 | 4.4:-12196836 | MS.gene27943:CDS |
| TGTAAATCAACTGAATCCCA+GGG | 0.616370 | 4.4:+12196299 | None:intergenic |
| GGTAGGGAGAATGAGACTTG+TGG | 0.625569 | 4.4:+12195725 | None:intergenic |
| TTATGCAGATTCGAACAAAG+TGG | 0.626214 | 4.4:-12197105 | MS.gene27943:CDS |
| CAACTTGTTCTTCAGCCAAG+GGG | 0.631432 | 4.4:-12197143 | MS.gene27943:CDS |
| AAGTTGACCAGCACCAACAT+TGG | 0.633587 | 4.4:+12197160 | None:intergenic |
| CCGGCTAACTCTTCAAACAA+AGG | 0.634501 | 4.4:+12195849 | None:intergenic |
| GACAGCACAACCATTGCTTG+AGG | 0.639965 | 4.4:-12197240 | MS.gene27943:CDS |
| CTATTGGAGGTGTTTCATGG+TGG | 0.653727 | 4.4:-12196750 | MS.gene27943:CDS |
| CCATTGCTTGAGGGAGATGG+TGG | 0.656696 | 4.4:-12197230 | MS.gene27943:CDS |
| TTGTTGCACAGTAGGTGACA+AGG | 0.665977 | 4.4:+12195806 | None:intergenic |
| GCCGGAGAGACATCAGTATG+GGG | 0.687095 | 4.4:-12195831 | MS.gene27943:CDS |
| GTAAATCAACTGAATCCCAG+GGG | 0.756773 | 4.4:+12196300 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACAATTTTAATAAAGATG+AGG | - | chr4.4:12196398-12196417 | MS.gene27943:CDS | 15.0% |
| !!! | TAAAGATTTTCCTTTTATTA+AGG | - | chr4.4:12196590-12196609 | MS.gene27943:CDS | 15.0% |
| !! | GATCTTAACATTATATTTCT+TGG | - | chr4.4:12196273-12196292 | MS.gene27943:CDS | 20.0% |
| !! | TTAGCAAAAACAAAAAAATG+TGG | + | chr4.4:12196801-12196820 | None:intergenic | 20.0% |
| !!! | ATTTGAAATTATTTTCGATC+TGG | - | chr4.4:12197046-12197065 | MS.gene27943:intron | 20.0% |
| !!! | TTTTGATTCACAAATCAATT+TGG | - | chr4.4:12197012-12197031 | MS.gene27943:intron | 20.0% |
| ! | AAAAAATAAGTGAATTCTCC+TGG | + | chr4.4:12196321-12196340 | None:intergenic | 25.0% |
| ! | AAGTGGAAAAATAGAAATTG+TGG | - | chr4.4:12196716-12196735 | MS.gene27943:CDS | 25.0% |
| ! | AGTGGAAAAATAGAAATTGT+GGG | - | chr4.4:12196717-12196736 | MS.gene27943:CDS | 25.0% |
| ! | ATCACTTATTTGGTCAAATT+TGG | - | chr4.4:12196113-12196132 | MS.gene27943:intron | 25.0% |
| ! | CATAAACAAAGTCTTTAGTT+AGG | + | chr4.4:12196506-12196525 | None:intergenic | 25.0% |
| ! | GTGATAATCAAGTTAGAAAA+AGG | - | chr4.4:12196453-12196472 | MS.gene27943:CDS | 25.0% |
| ! | TGCTAAAACACCATATATTA+AGG | - | chr4.4:12196533-12196552 | MS.gene27943:CDS | 25.0% |
| ! | TTATCTAAATGATGATCTCT+TGG | - | chr4.4:12195958-12195977 | MS.gene27943:intron | 25.0% |
| !! | TTCCTTTTATTAAGGATGTT+GGG | - | chr4.4:12196598-12196617 | MS.gene27943:CDS | 25.0% |
| !! | TTTCCTTTTATTAAGGATGT+TGG | - | chr4.4:12196597-12196616 | MS.gene27943:CDS | 25.0% |
| !!! | TTCACTTATTTTTTCCTAAG+TGG | - | chr4.4:12196327-12196346 | MS.gene27943:CDS | 25.0% |
| AACCCAACATCCTTAATAAA+AGG | + | chr4.4:12196603-12196622 | None:intergenic | 30.0% | |
| ACTTGAACCTAATGCTATTA+AGG | - | chr4.4:12196641-12196660 | MS.gene27943:CDS | 30.0% | |
| AGGAAAATCTTTATCCGTTA+AGG | + | chr4.4:12196583-12196602 | None:intergenic | 30.0% | |
| ATAGAAATTGTGGGATTGAA+TGG | - | chr4.4:12196726-12196745 | MS.gene27943:CDS | 30.0% | |
| ATATATTAAGGCCCAAAATG+TGG | - | chr4.4:12196545-12196564 | MS.gene27943:CDS | 30.0% | |
| GTATCACAACATCACTTATT+TGG | - | chr4.4:12196103-12196122 | MS.gene27943:intron | 30.0% | |
| TATATTAAGGCCCAAAATGT+GGG | - | chr4.4:12196546-12196565 | MS.gene27943:CDS | 30.0% | |
| ! | ACATTTTGGGCCTTAATATA+TGG | + | chr4.4:12196546-12196565 | None:intergenic | 30.0% |
| ! | CTTCAAAACAACTTCTTTTC+CGG | + | chr4.4:12196184-12196203 | None:intergenic | 30.0% |
| ! | GTTTAAAACTCCAACTTACT+TGG | + | chr4.4:12196871-12196890 | None:intergenic | 30.0% |
| !! | AAGTTCTCAAGTTCAAGTTT+TGG | - | chr4.4:12195793-12195812 | MS.gene27943:CDS | 30.0% |
| !!! | GTTGTTTTGAAGCTTAAGAA+AGG | - | chr4.4:12196192-12196211 | MS.gene27943:CDS | 30.0% |
| !!! | TTTGTTTTTGCTAAAGTTGC+TGG | - | chr4.4:12196807-12196826 | MS.gene27943:CDS | 30.0% |
| AAGCTAACACAAAGCCAAAA+AGG | - | chr4.4:12196426-12196445 | MS.gene27943:CDS | 35.0% | |
| AGCTAACACAAAGCCAAAAA+GGG | - | chr4.4:12196427-12196446 | MS.gene27943:CDS | 35.0% | |
| ATGTAAATCAACTGAATCCC+AGG | + | chr4.4:12196687-12196706 | None:intergenic | 35.0% | |
| ATGTTGGGTTAAGTGTGATT+AGG | - | chr4.4:12196613-12196632 | MS.gene27943:CDS | 35.0% | |
| ATTGAATGGAAAACGTGTCT+TGG | - | chr4.4:12196740-12196759 | MS.gene27943:CDS | 35.0% | |
| ATTTACATTGCTAGAGGAAG+TGG | - | chr4.4:12196699-12196718 | MS.gene27943:CDS | 35.0% | |
| TATGCAGATTCGAACAAAGT+GGG | - | chr4.4:12195878-12195897 | MS.gene27943:intron | 35.0% | |
| TCTTTAGTTAGGTCCAATTG+TGG | + | chr4.4:12196495-12196514 | None:intergenic | 35.0% | |
| TGTAAATCAACTGAATCCCA+GGG | + | chr4.4:12196686-12196705 | None:intergenic | 35.0% | |
| TGTTGGGTTAAGTGTGATTA+GGG | - | chr4.4:12196614-12196633 | MS.gene27943:CDS | 35.0% | |
| TTATGCAGATTCGAACAAAG+TGG | - | chr4.4:12195877-12195896 | MS.gene27943:intron | 35.0% | |
| TTGTTCGAATCTGCATAATG+AGG | + | chr4.4:12195875-12195894 | None:intergenic | 35.0% | |
| ! | CAGTTGATTTACATTGCTAG+AGG | - | chr4.4:12196693-12196712 | MS.gene27943:CDS | 35.0% |
| ! | TGATTATCACAACCCCTTTT+TGG | + | chr4.4:12196443-12196462 | None:intergenic | 35.0% |
| ! | TTTTTCCTAAGTGGTGTTCA+AGG | - | chr4.4:12196336-12196355 | MS.gene27943:CDS | 35.0% |
| !! | AAAGTGGGTTATGTCATAGA+AGG | - | chr4.4:12195893-12195912 | MS.gene27943:intron | 35.0% |
| AAAGTCCTTGAACACCACTT+AGG | + | chr4.4:12196344-12196363 | None:intergenic | 40.0% | |
| ACTTCAATAGCTCATGTTCC+AGG | - | chr4.4:12196300-12196319 | MS.gene27943:CDS | 40.0% | |
| GATGTCATACCTGTACCTAT+TGG | - | chr4.4:12196216-12196235 | MS.gene27943:CDS | 40.0% | |
| GCTAACACAAAGCCAAAAAG+GGG | - | chr4.4:12196428-12196447 | MS.gene27943:CDS | 40.0% | |
| GTAAATCAACTGAATCCCAG+GGG | + | chr4.4:12196685-12196704 | None:intergenic | 40.0% | |
| GTGACAACTACCAAGTAAGT+TGG | - | chr4.4:12196858-12196877 | MS.gene27943:intron | 40.0% | |
| GTTTCATGGTGGTTCAATGA+TGG | - | chr4.4:12196243-12196262 | MS.gene27943:CDS | 40.0% | |
| TGTCTTGGATGCTCAAGTTA+AGG | - | chr4.4:12196755-12196774 | MS.gene27943:CDS | 40.0% | |
| ! | AAAGACACTTGTTGCACAGT+AGG | + | chr4.4:12197187-12197206 | None:intergenic | 40.0% |
| ! | CCTTTGTTTGAAGAGTTAGC+CGG | - | chr4.4:12197133-12197152 | MS.gene27943:CDS | 40.0% |
| ! | CGATCTGGAGTACGTTATTA+AGG | - | chr4.4:12197061-12197080 | MS.gene27943:intron | 40.0% |
| ! | CGTGACTAATCCCACATTTT+GGG | + | chr4.4:12196559-12196578 | None:intergenic | 40.0% |
| ! | GCAACAAGTGTCTTTTAACG+TGG | - | chr4.4:12197192-12197211 | MS.gene27943:CDS | 40.0% |
| ! | TCAACTTGTTCTTCAGCCAA+GGG | - | chr4.4:12195838-12195857 | MS.gene27943:CDS | 40.0% |
| ! | TCGTGACTAATCCCACATTT+TGG | + | chr4.4:12196560-12196579 | None:intergenic | 40.0% |
| !! | ATGGTGGTGGTTACTACATT+TGG | - | chr4.4:12195768-12195787 | MS.gene27943:CDS | 40.0% |
| !! | GAAGGTGCCTTAATAGCATT+AGG | + | chr4.4:12196651-12196670 | None:intergenic | 40.0% |
| !! | TACCTATTGGAGGTGTTTCA+TGG | - | chr4.4:12196229-12196248 | MS.gene27943:CDS | 40.0% |
| !!! | GTTTTGGCTAAGACCAATGT+TGG | - | chr4.4:12195809-12195828 | MS.gene27943:CDS | 40.0% |
| AAGTTGACCAGCACCAACAT+TGG | + | chr4.4:12195825-12195844 | None:intergenic | 45.0% | |
| ACAGCACAACCATTGCTTGA+GGG | - | chr4.4:12195743-12195762 | MS.gene27943:CDS | 45.0% | |
| ACCTATGCCTAAGCCACAAT+TGG | - | chr4.4:12196479-12196498 | MS.gene27943:CDS | 45.0% | |
| AGCAATGGTTGTGCTGTCTT+CGG | + | chr4.4:12195740-12195759 | None:intergenic | 45.0% | |
| AGTTGCTGGTGAAGAAGGAA+TGG | - | chr4.4:12196821-12196840 | MS.gene27943:CDS | 45.0% | |
| CACCATGAAACACCTCCAAT+AGG | + | chr4.4:12196234-12196253 | None:intergenic | 45.0% | |
| CCGGCTAACTCTTCAAACAA+AGG | + | chr4.4:12197136-12197155 | None:intergenic | 45.0% | |
| CTTCAAACCTAACTACCCCT+GGG | - | chr4.4:12196667-12196686 | MS.gene27943:CDS | 45.0% | |
| GAAACACCTCCAATAGGTAC+AGG | + | chr4.4:12196228-12196247 | None:intergenic | 45.0% | |
| GCTAAAGTTGCTGGTGAAGA+AGG | - | chr4.4:12196816-12196835 | MS.gene27943:CDS | 45.0% | |
| GGTCAAATTTGGCAAACGCA+GGG | - | chr4.4:12196124-12196143 | MS.gene27943:intron | 45.0% | |
| GTCATACCTGTACCTATTGG+AGG | - | chr4.4:12196219-12196238 | MS.gene27943:CDS | 45.0% | |
| GTTAGGTCCAATTGTGGCTT+AGG | + | chr4.4:12196489-12196508 | None:intergenic | 45.0% | |
| TCCAATTGTGGCTTAGGCAT+AGG | + | chr4.4:12196483-12196502 | None:intergenic | 45.0% | |
| TGGTCAAATTTGGCAAACGC+AGG | - | chr4.4:12196123-12196142 | MS.gene27943:intron | 45.0% | |
| TTGGATGCTCAAGTTAAGGC+TGG | - | chr4.4:12196759-12196778 | MS.gene27943:CDS | 45.0% | |
| TTGTTGCACAGTAGGTGACA+AGG | + | chr4.4:12197179-12197198 | None:intergenic | 45.0% | |
| ! | AACAACTTCTTTTCCGGTGC+TGG | + | chr4.4:12196178-12196197 | None:intergenic | 45.0% |
| ! | ACAACTTCTTTTCCGGTGCT+GGG | + | chr4.4:12196177-12196196 | None:intergenic | 45.0% |
| ! | CAACTTGTTCTTCAGCCAAG+GGG | - | chr4.4:12195839-12195858 | MS.gene27943:CDS | 45.0% |
| ! | GACTGATGGTGTAGTTGGAA+TGG | - | chr4.4:12196146-12196165 | MS.gene27943:CDS | 45.0% |
| ! | GTCAACTTGTTCTTCAGCCA+AGG | - | chr4.4:12195837-12195856 | MS.gene27943:CDS | 45.0% |
| !! | CTATTGGAGGTGTTTCATGG+TGG | - | chr4.4:12196232-12196251 | MS.gene27943:CDS | 45.0% |
| !! | GGGATTAGTCACGACCTTAA+CGG | - | chr4.4:12196566-12196585 | MS.gene27943:CDS | 45.0% |
| !! | TTTAAATAGAATATATTTAT+CGG | - | chr4.4:12196958-12196977 | MS.gene27943:intron | 5.0% |
| !!! | ATATTATAAACAAAATTTTA+TGG | + | chr4.4:12196083-12196102 | None:intergenic | 5.0% |
| ACTGAATCCCAGGGGTAGTT+AGG | + | chr4.4:12196677-12196696 | None:intergenic | 50.0% | |
| AGCCGGAGAGACATCAGTAT+GGG | - | chr4.4:12197150-12197169 | MS.gene27943:CDS | 50.0% | |
| CAACCATTGCTTGAGGGAGA+TGG | - | chr4.4:12195749-12195768 | MS.gene27943:CDS | 50.0% | |
| CCAGGGGTAGTTAGGTTTGA+AGG | + | chr4.4:12196669-12196688 | None:intergenic | 50.0% | |
| CCTTCAAACCTAACTACCCC+TGG | - | chr4.4:12196666-12196685 | MS.gene27943:CDS | 50.0% | |
| GACAGCACAACCATTGCTTG+AGG | - | chr4.4:12195742-12195761 | MS.gene27943:CDS | 50.0% | |
| GCTAAGACCAATGTTGGTGC+TGG | - | chr4.4:12195815-12195834 | MS.gene27943:CDS | 50.0% | |
| GGTAGGGAGAATGAGACTTG+TGG | + | chr4.4:12197260-12197279 | None:intergenic | 50.0% | |
| TAGCCGGAGAGACATCAGTA+TGG | - | chr4.4:12197149-12197168 | MS.gene27943:CDS | 50.0% | |
| TCCCCATACTGATGTCTCTC+CGG | + | chr4.4:12197155-12197174 | None:intergenic | 50.0% | |
| TGAGGAAGAGCAAATCCCCT+TGG | + | chr4.4:12195857-12195876 | None:intergenic | 50.0% | |
| !! | CAACTTCTTTTCCGGTGCTG+GGG | + | chr4.4:12196176-12196195 | None:intergenic | 50.0% |
| CCACCATCTCCCTCAAGCAA+TGG | + | chr4.4:12195755-12195774 | None:intergenic | 55.0% | |
| CCATTGCTTGAGGGAGATGG+TGG | - | chr4.4:12195752-12195771 | MS.gene27943:CDS | 55.0% | |
| GCCGGAGAGACATCAGTATG+GGG | - | chr4.4:12197151-12197170 | MS.gene27943:CDS | 55.0% | |
| TTGGCAAACGCAGGGACTGA+TGG | - | chr4.4:12196132-12196151 | MS.gene27943:intron | 55.0% | |
| ! | GCAGGGACTGATGGTGTAGT+TGG | - | chr4.4:12196141-12196160 | MS.gene27943:CDS | 55.0% |
| ! | TTGCTTGAGGGAGATGGTGG+TGG | - | chr4.4:12195755-12195774 | MS.gene27943:CDS | 55.0% |
| GGAATGGTACTCCCCAGCAC+CGG | - | chr4.4:12196162-12196181 | MS.gene27943:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 12195719 | 12197285 | 12195719 | ID=MS.gene27943 |
| chr4.4 | mRNA | 12195719 | 12197285 | 12195719 | ID=MS.gene27943.t1;Parent=MS.gene27943 |
| chr4.4 | exon | 12197090 | 12197285 | 12197090 | ID=MS.gene27943.t1.exon1;Parent=MS.gene27943.t1 |
| chr4.4 | CDS | 12197090 | 12197285 | 12197090 | ID=cds.MS.gene27943.t1;Parent=MS.gene27943.t1 |
| chr4.4 | exon | 12196133 | 12196859 | 12196133 | ID=MS.gene27943.t1.exon2;Parent=MS.gene27943.t1 |
| chr4.4 | CDS | 12196133 | 12196859 | 12196133 | ID=cds.MS.gene27943.t1;Parent=MS.gene27943.t1 |
| chr4.4 | exon | 12195719 | 12195872 | 12195719 | ID=MS.gene27943.t1.exon3;Parent=MS.gene27943.t1 |
| chr4.4 | CDS | 12195719 | 12195872 | 12195719 | ID=cds.MS.gene27943.t1;Parent=MS.gene27943.t1 |
| Gene Sequence |
| Protein sequence |
