Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47902.t1 | BAU98053.1 | 96.6 | 358 | 12 | 0 | 1 | 358 | 1 | 358 | 3.50E-193 | 684.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47902.t1 | P07730 | 22.6 | 389 | 213 | 9 | 35 | 338 | 80 | 465 | 5.0e-23 | 110.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47902.t1 | A0A161JQR4 | 96.6 | 358 | 12 | 0 | 1 | 358 | 1 | 358 | 2.5e-193 | 684.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04921 | MS.gene47902 | 0.802813 | 4.69E-49 | -1.69E-46 |
| MS.gene049281 | MS.gene47902 | 0.800498 | 1.40E-48 | -1.69E-46 |
| MS.gene050082 | MS.gene47902 | 0.858438 | 8.24E-63 | -1.69E-46 |
| MS.gene050170 | MS.gene47902 | -0.81514 | 1.08E-51 | -1.69E-46 |
| MS.gene050338 | MS.gene47902 | 0.864476 | 1.18E-64 | -1.69E-46 |
| MS.gene050496 | MS.gene47902 | -0.821271 | 4.41E-53 | -1.69E-46 |
| MS.gene050521 | MS.gene47902 | 0.810568 | 1.08E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene47902 | -0.805356 | 1.39E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene47902 | -0.804021 | 2.64E-49 | -1.69E-46 |
| MS.gene050904 | MS.gene47902 | -0.81268 | 3.75E-51 | -1.69E-46 |
| MS.gene051044 | MS.gene47902 | 0.800401 | 1.47E-48 | -1.69E-46 |
| MS.gene051138 | MS.gene47902 | 0.805905 | 1.07E-49 | -1.69E-46 |
| MS.gene051364 | MS.gene47902 | 0.842504 | 2.48E-58 | -1.69E-46 |
| MS.gene051366 | MS.gene47902 | 0.846457 | 2.15E-59 | -1.69E-46 |
| MS.gene051367 | MS.gene47902 | 0.842353 | 2.72E-58 | -1.69E-46 |
| MS.gene051422 | MS.gene47902 | 0.851367 | 9.29E-61 | -1.69E-46 |
| MS.gene051651 | MS.gene47902 | 0.811199 | 7.89E-51 | -1.69E-46 |
| MS.gene051718 | MS.gene47902 | 0.841721 | 4.00E-58 | -1.69E-46 |
| MS.gene052383 | MS.gene47902 | 0.824182 | 9.27E-54 | -1.69E-46 |
| MS.gene052606 | MS.gene47902 | 0.816703 | 4.82E-52 | -1.69E-46 |
| MS.gene052707 | MS.gene47902 | 0.820349 | 7.19E-53 | -1.69E-46 |
| MS.gene052710 | MS.gene47902 | 0.830122 | 3.51E-55 | -1.69E-46 |
| MS.gene053957 | MS.gene47902 | 0.804218 | 2.40E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene47902 | -0.804599 | 2.00E-49 | -1.69E-46 |
| MS.gene055251 | MS.gene47902 | 0.871116 | 8.73E-67 | -1.69E-46 |
| MS.gene055748 | MS.gene47902 | -0.800603 | 1.33E-48 | -1.69E-46 |
| MS.gene055751 | MS.gene47902 | -0.818314 | 2.09E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene47902 | -0.829259 | 5.69E-55 | -1.69E-46 |
| MS.gene055942 | MS.gene47902 | 0.816742 | 4.73E-52 | -1.69E-46 |
| MS.gene056198 | MS.gene47902 | 0.80176 | 7.73E-49 | -1.69E-46 |
| MS.gene056200 | MS.gene47902 | 0.80484 | 1.78E-49 | -1.69E-46 |
| MS.gene056354 | MS.gene47902 | 0.826121 | 3.23E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene47902 | -0.822833 | 1.92E-53 | -1.69E-46 |
| MS.gene056692 | MS.gene47902 | -0.818492 | 1.91E-52 | -1.69E-46 |
| MS.gene056694 | MS.gene47902 | 0.824337 | 8.52E-54 | -1.69E-46 |
| MS.gene056697 | MS.gene47902 | 0.817717 | 2.85E-52 | -1.69E-46 |
| MS.gene056856 | MS.gene47902 | 0.853452 | 2.37E-61 | -1.69E-46 |
| MS.gene057549 | MS.gene47902 | 0.810818 | 9.54E-51 | -1.69E-46 |
| MS.gene057768 | MS.gene47902 | 0.814407 | 1.57E-51 | -1.69E-46 |
| MS.gene058015 | MS.gene47902 | 0.831457 | 1.65E-55 | -1.69E-46 |
| MS.gene058111 | MS.gene47902 | 0.809422 | 1.91E-50 | -1.69E-46 |
| MS.gene058268 | MS.gene47902 | 0.833701 | 4.59E-56 | -1.69E-46 |
| MS.gene058269 | MS.gene47902 | 0.81069 | 1.02E-50 | -1.69E-46 |
| MS.gene058334 | MS.gene47902 | 0.835809 | 1.35E-56 | -1.69E-46 |
| MS.gene058382 | MS.gene47902 | 0.879512 | 1.17E-69 | -1.69E-46 |
| MS.gene058386 | MS.gene47902 | 0.820869 | 5.46E-53 | -1.69E-46 |
| MS.gene05926 | MS.gene47902 | 0.811332 | 7.38E-51 | -1.69E-46 |
| MS.gene059685 | MS.gene47902 | 0.811753 | 5.98E-51 | -1.69E-46 |
| MS.gene059703 | MS.gene47902 | 0.800121 | 1.67E-48 | -1.69E-46 |
| MS.gene059865 | MS.gene47902 | -0.80187 | 7.34E-49 | -1.69E-46 |
| MS.gene060076 | MS.gene47902 | 0.821211 | 4.55E-53 | -1.69E-46 |
| MS.gene060096 | MS.gene47902 | 0.806065 | 9.86E-50 | -1.69E-46 |
| MS.gene060405 | MS.gene47902 | 0.816874 | 4.42E-52 | -1.69E-46 |
| MS.gene060561 | MS.gene47902 | 0.803037 | 4.22E-49 | -1.69E-46 |
| MS.gene060595 | MS.gene47902 | 0.810759 | 9.83E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene47902 | -0.815676 | 8.18E-52 | -1.69E-46 |
| MS.gene060823 | MS.gene47902 | 0.846241 | 2.46E-59 | -1.69E-46 |
| MS.gene060982 | MS.gene47902 | -0.824518 | 7.73E-54 | -1.69E-46 |
| MS.gene061044 | MS.gene47902 | 0.85197 | 6.27E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47902.t1 | MTR_8g088860 | 94.150 | 359 | 20 | 1 | 1 | 358 | 1 | 359 | 0.0 | 675 |
| MS.gene47902.t1 | MTR_8g088880 | 84.637 | 358 | 55 | 0 | 1 | 358 | 1 | 358 | 0.0 | 603 |
| MS.gene47902.t1 | MTR_8g088890 | 71.333 | 300 | 86 | 0 | 29 | 328 | 1 | 300 | 1.61e-153 | 434 |
| MS.gene47902.t1 | MTR_4g062570 | 41.854 | 356 | 205 | 2 | 1 | 356 | 1 | 354 | 4.40e-104 | 310 |
| MS.gene47902.t1 | MTR_4g072780 | 41.573 | 356 | 206 | 2 | 1 | 356 | 1 | 354 | 5.42e-103 | 307 |
| MS.gene47902.t1 | MTR_4g062550 | 41.292 | 356 | 207 | 2 | 1 | 356 | 1 | 354 | 1.28e-102 | 306 |
| MS.gene47902.t1 | MTR_4g032360 | 41.573 | 356 | 206 | 2 | 1 | 356 | 1 | 354 | 2.86e-102 | 306 |
| MS.gene47902.t1 | MTR_5g022720 | 33.721 | 258 | 139 | 4 | 96 | 348 | 33 | 263 | 2.37e-40 | 143 |
| MS.gene47902.t1 | MTR_4g076710 | 74.419 | 43 | 11 | 0 | 73 | 115 | 1 | 43 | 5.35e-17 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47902.t1 | AT1G07750 | 41.127 | 355 | 205 | 3 | 1 | 355 | 1 | 351 | 1.18e-97 | 294 |
| MS.gene47902.t1 | AT2G28680 | 40.896 | 357 | 209 | 2 | 1 | 357 | 1 | 355 | 4.67e-97 | 292 |
| MS.gene47902.t1 | AT1G03890 | 24.505 | 404 | 234 | 14 | 17 | 357 | 53 | 448 | 1.89e-20 | 92.4 |
| MS.gene47902.t1 | AT1G03880 | 21.975 | 405 | 244 | 10 | 13 | 351 | 43 | 441 | 5.97e-18 | 85.1 |
| MS.gene47902.t1 | AT5G44120 | 22.705 | 414 | 237 | 14 | 13 | 351 | 49 | 454 | 2.92e-17 | 83.2 |
| MS.gene47902.t1 | AT2G28490 | 22.782 | 417 | 244 | 14 | 8 | 357 | 89 | 494 | 1.07e-16 | 81.6 |
| MS.gene47902.t1 | AT5G44120 | 32.653 | 147 | 96 | 2 | 206 | 351 | 123 | 267 | 1.51e-13 | 70.9 |
| MS.gene47902.t1 | AT5G44120 | 32.653 | 147 | 96 | 2 | 206 | 351 | 206 | 350 | 3.54e-13 | 70.5 |
| MS.gene47902.t1 | AT4G28520 | 30.822 | 146 | 100 | 1 | 206 | 351 | 290 | 434 | 1.43e-12 | 68.9 |
| MS.gene47902.t1 | AT4G28520 | 30.612 | 147 | 101 | 1 | 205 | 351 | 360 | 505 | 1.69e-12 | 68.9 |
Find 77 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTTAACATTATATTTCT+TGG | 0.148846 | 4.1:-11733384 | MS.gene47902:CDS |
| TCGTGACTAATCCCACATTT+TGG | 0.192541 | 4.1:+11733100 | None:intergenic |
| ACTTGAACCTAATGCTATTA+AGG | 0.231472 | 4.1:-11733016 | MS.gene47902:CDS |
| AACCCAACATCCTTAATAAA+AGG | 0.256810 | 4.1:+11733057 | None:intergenic |
| TGTTGGGTTAAGTGTGATTA+GGG | 0.277054 | 4.1:-11733043 | MS.gene47902:CDS |
| AAGCTAACACAAAGCCAAAA+AGG | 0.292183 | 4.1:-11733231 | MS.gene47902:CDS |
| ATGTTGGGTTAAGTGTGATT+AGG | 0.298094 | 4.1:-11733044 | MS.gene47902:CDS |
| TGCTAAAACACCATATATTA+AGG | 0.317069 | 4.1:-11733124 | MS.gene47902:CDS |
| AGTTTAATCAAATATGGATT+TGG | 0.320782 | 4.1:-11733951 | None:intergenic |
| TATAAACAAGTCAAACTAAA+TGG | 0.330642 | 4.1:+11732379 | None:intergenic |
| GTGATAATCAAGTTAGAAAA+AGG | 0.339715 | 4.1:-11733204 | MS.gene47902:CDS |
| AGGAAAATCTTTATCCGTTA+AGG | 0.342094 | 4.1:+11733077 | None:intergenic |
| TACCTATTGGAGGTGTTTCA+TGG | 0.356456 | 4.1:-11733428 | MS.gene47902:CDS |
| ACTGAATCCCAGGGGTAGTT+AGG | 0.358988 | 4.1:+11732983 | None:intergenic |
| ATGGTGGTGGTTACTACATT+TGG | 0.379198 | 4.1:-11733889 | MS.gene47902:CDS |
| ACATTAGTCTTAGCCAAAAC+TGG | 0.384648 | 4.1:+11733851 | None:intergenic |
| ATAGAAATTGTGGGATTGAA+TGG | 0.390973 | 4.1:-11732931 | MS.gene47902:CDS |
| GAAGGTGCCTTAATAGCATT+AGG | 0.400052 | 4.1:+11733009 | None:intergenic |
| CATAAACAAAGTCTTTAGTT+AGG | 0.401436 | 4.1:+11733154 | None:intergenic |
| ACTTCAATAGCTCATGTTCC+AGG | 0.412111 | 4.1:-11733357 | MS.gene47902:CDS |
| ATTTACATTGCTAGAGGAAG+TGG | 0.419131 | 4.1:-11732958 | MS.gene47902:CDS |
| GCTAAAGTTGCTGGTGAAGA+AGG | 0.419914 | 4.1:-11732841 | MS.gene47902:CDS |
| ACCTATGCCTAAGCCACAAT+TGG | 0.420447 | 4.1:-11733178 | MS.gene47902:CDS |
| AAGTTCTCAAGTTCCAGTTT+TGG | 0.422771 | 4.1:-11733864 | MS.gene47902:CDS |
| TAGCCGGAGAGACATCAGTA+TGG | 0.435918 | 4.1:-11732508 | MS.gene47902:CDS |
| GCAGGGACTGATGGCGTAGT+TGG | 0.443394 | 4.1:-11733516 | MS.gene47902:intron |
| AGACAGCACAACCATTGCTT+GGG | 0.444520 | 4.1:-11733916 | MS.gene47902:CDS |
| CCAGGGGTAGTTAGGTTTGA+AGG | 0.446656 | 4.1:+11732991 | None:intergenic |
| GTTAGGTCCAATTGTGGCTT+AGG | 0.462868 | 4.1:+11733171 | None:intergenic |
| CCTTCAAACCTAACTACCCC+TGG | 0.463501 | 4.1:-11732991 | MS.gene47902:CDS |
| GTCAACTTGTTCTTCAGCCA+AGG | 0.466314 | 4.1:-11733820 | MS.gene47902:CDS |
| GATGTCATACCTGTACCTAT+TGG | 0.485348 | 4.1:-11733441 | MS.gene47902:CDS |
| TGTCTTGGATGCTCAAGTTA+AGG | 0.494376 | 4.1:-11732902 | MS.gene47902:CDS |
| AAAGTGGGTTATGTCATAGA+AGG | 0.498483 | 4.1:-11733764 | MS.gene47902:intron |
| GGGATTAGTCACGACCTTAA+CGG | 0.507459 | 4.1:-11733091 | MS.gene47902:CDS |
| CACCATGAAACACCTCCAAT+AGG | 0.508936 | 4.1:+11733426 | None:intergenic |
| AGCAATGGTTGTGCTGTCTT+CGG | 0.510333 | 4.1:+11733920 | None:intergenic |
| ATGTAAATCAACTGAATCCC+AGG | 0.510868 | 4.1:+11732973 | None:intergenic |
| AAGACAGCACAACCATTGCT+TGG | 0.514961 | 4.1:-11733917 | MS.gene47902:CDS |
| AGCCGGAGAGACATCAGTAT+GGG | 0.531399 | 4.1:-11732507 | MS.gene47902:CDS |
| AACAAGTCAAACTAAATGGT+AGG | 0.531603 | 4.1:+11732383 | None:intergenic |
| AAAGACACTTGTTGCACAGT+AGG | 0.532747 | 4.1:+11732473 | None:intergenic |
| GTTTCATGGTGGTTCAATGA+TGG | 0.534589 | 4.1:-11733414 | MS.gene47902:CDS |
| GCTAAGACTAATGTTGGTGC+TGG | 0.541420 | 4.1:-11733842 | MS.gene47902:CDS |
| GACTGATGGCGTAGTTGGAA+TGG | 0.544651 | 4.1:-11733511 | MS.gene47902:CDS |
| TCAACTTGTTCTTCAGCCAA+GGG | 0.545644 | 4.1:-11733819 | MS.gene47902:CDS |
| ATTGAATGGAAAACGTGTCT+TGG | 0.545710 | 4.1:-11732917 | MS.gene47902:CDS |
| TTGGCAAACGCAGGGACTGA+TGG | 0.551265 | 4.1:-11733525 | MS.gene47902:intron |
| TTGGATGCTCAAGTTAAGGC+TGG | 0.552687 | 4.1:-11732898 | MS.gene47902:CDS |
| TTGTTCGAATCTGCATAATG+AGG | 0.553966 | 4.1:+11733785 | None:intergenic |
| CCTTTGTTTGAAGAGTTAGC+CGG | 0.556322 | 4.1:-11732524 | MS.gene47902:CDS |
| GTCATACCTGTACCTATTGG+AGG | 0.560557 | 4.1:-11733438 | MS.gene47902:CDS |
| TCCAATTGTGGCTTAGGCAT+AGG | 0.563240 | 4.1:+11733177 | None:intergenic |
| TCCCCATACTGATGTCTCTC+CGG | 0.565683 | 4.1:+11732505 | None:intergenic |
| GGAATGGTACTCCCCAGCAC+TGG | 0.566146 | 4.1:-11733495 | MS.gene47902:CDS |
| ATATATTAAGGCCCAAAATG+TGG | 0.568201 | 4.1:-11733112 | MS.gene47902:CDS |
| AAAGTCCTTGAACACCACTT+AGG | 0.569759 | 4.1:+11733316 | None:intergenic |
| AGTTGCTGGTGAAGAAGGAA+TGG | 0.570497 | 4.1:-11732836 | MS.gene47902:CDS |
| GAAACACCTCCAATAGGTAC+AGG | 0.571470 | 4.1:+11733432 | None:intergenic |
| ACAAGTCAAACTAAATGGTA+GGG | 0.575189 | 4.1:+11732384 | None:intergenic |
| TCTTTAGTTAGGTCCAATTG+TGG | 0.584862 | 4.1:+11733165 | None:intergenic |
| TATATTAAGGCCCAAAATGT+GGG | 0.592612 | 4.1:-11733111 | MS.gene47902:CDS |
| CAGTTGATTTACATTGCTAG+AGG | 0.600562 | 4.1:-11732964 | MS.gene47902:CDS |
| CTTCAAACCTAACTACCCCT+GGG | 0.606286 | 4.1:-11732990 | MS.gene47902:CDS |
| TGAGGAAGAGCAAATCCCCT+TGG | 0.612076 | 4.1:+11733803 | None:intergenic |
| TATGCAGATTCGAACAAAGT+GGG | 0.614043 | 4.1:-11733779 | MS.gene47902:CDS |
| TGTAAATCAACTGAATCCCA+GGG | 0.616370 | 4.1:+11732974 | None:intergenic |
| GGTAGGGAGAATGAGACTTG+TGG | 0.625569 | 4.1:+11732400 | None:intergenic |
| TTATGCAGATTCGAACAAAG+TGG | 0.626214 | 4.1:-11733780 | MS.gene47902:CDS |
| CAACTTGTTCTTCAGCCAAG+GGG | 0.631432 | 4.1:-11733818 | MS.gene47902:CDS |
| CCGGCTAACTCTTCAAACAA+AGG | 0.634501 | 4.1:+11732524 | None:intergenic |
| GACAGCACAACCATTGCTTG+GGG | 0.653699 | 4.1:-11733915 | MS.gene47902:CDS |
| CTATTGGAGGTGTTTCATGG+TGG | 0.653727 | 4.1:-11733425 | MS.gene47902:CDS |
| TTGTTGCACAGTAGGTGACA+AGG | 0.665977 | 4.1:+11732481 | None:intergenic |
| GCCGGAGAGACATCAGTATG+GGG | 0.687095 | 4.1:-11732506 | MS.gene47902:CDS |
| ACAGCACAACCATTGCTTGG+GGG | 0.700728 | 4.1:-11733914 | MS.gene47902:CDS |
| GTAAATCAACTGAATCCCAG+GGG | 0.756773 | 4.1:+11732975 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACAATTTTAATAAAGATG+AGG | - | chr4.1:11733073-11733092 | MS.gene47902:CDS | 15.0% |
| !!! | TAAAGATTTTCCTTTTATTA+AGG | - | chr4.1:11733265-11733284 | MS.gene47902:CDS | 15.0% |
| !! | GATCTTAACATTATATTTCT+TGG | - | chr4.1:11732948-11732967 | MS.gene47902:CDS | 20.0% |
| !! | TTAGCAAAAACAAAAAAATG+TGG | + | chr4.1:11733476-11733495 | None:intergenic | 20.0% |
| !!! | ATTTGAAATTATTTTCGATC+TGG | - | chr4.1:11733721-11733740 | MS.gene47902:intron | 20.0% |
| !!! | TTTTGATTCACAAATCAATT+TGG | - | chr4.1:11733687-11733706 | MS.gene47902:intron | 20.0% |
| ! | AAAAAATAAGTGAATTCTCC+TGG | + | chr4.1:11732996-11733015 | None:intergenic | 25.0% |
| ! | AAGTGGAAAAATAGAAATTG+TGG | - | chr4.1:11733391-11733410 | MS.gene47902:CDS | 25.0% |
| ! | AGTGGAAAAATAGAAATTGT+GGG | - | chr4.1:11733392-11733411 | MS.gene47902:CDS | 25.0% |
| ! | ATCACTTATTTGGTCAAATT+TGG | - | chr4.1:11732788-11732807 | MS.gene47902:intron | 25.0% |
| ! | CATAAACAAAGTCTTTAGTT+AGG | + | chr4.1:11733181-11733200 | None:intergenic | 25.0% |
| ! | GTGATAATCAAGTTAGAAAA+AGG | - | chr4.1:11733128-11733147 | MS.gene47902:CDS | 25.0% |
| ! | TGCTAAAACACCATATATTA+AGG | - | chr4.1:11733208-11733227 | MS.gene47902:CDS | 25.0% |
| ! | TTATCTAAATGATGATCTCT+TGG | - | chr4.1:11732633-11732652 | MS.gene47902:intron | 25.0% |
| !! | TTCCTTTTATTAAGGATGTT+GGG | - | chr4.1:11733273-11733292 | MS.gene47902:CDS | 25.0% |
| !! | TTTCCTTTTATTAAGGATGT+TGG | - | chr4.1:11733272-11733291 | MS.gene47902:CDS | 25.0% |
| !!! | TTCACTTATTTTTTCCTAAG+TGG | - | chr4.1:11733002-11733021 | MS.gene47902:CDS | 25.0% |
| AACCCAACATCCTTAATAAA+AGG | + | chr4.1:11733278-11733297 | None:intergenic | 30.0% | |
| ACTTGAACCTAATGCTATTA+AGG | - | chr4.1:11733316-11733335 | MS.gene47902:CDS | 30.0% | |
| AGGAAAATCTTTATCCGTTA+AGG | + | chr4.1:11733258-11733277 | None:intergenic | 30.0% | |
| ATAGAAATTGTGGGATTGAA+TGG | - | chr4.1:11733401-11733420 | MS.gene47902:CDS | 30.0% | |
| ATATATTAAGGCCCAAAATG+TGG | - | chr4.1:11733220-11733239 | MS.gene47902:CDS | 30.0% | |
| GTATCACAACATCACTTATT+TGG | - | chr4.1:11732778-11732797 | MS.gene47902:intron | 30.0% | |
| TATATTAAGGCCCAAAATGT+GGG | - | chr4.1:11733221-11733240 | MS.gene47902:CDS | 30.0% | |
| ! | ACATTTTGGGCCTTAATATA+TGG | + | chr4.1:11733221-11733240 | None:intergenic | 30.0% |
| ! | GTTTAAAACTCCAACTTACT+TGG | + | chr4.1:11733546-11733565 | None:intergenic | 30.0% |
| !!! | GTTGTTTTGAAGCTTAAGAA+AGG | - | chr4.1:11732867-11732886 | MS.gene47902:CDS | 30.0% |
| !!! | TTTGTTTTTGCTAAAGTTGC+TGG | - | chr4.1:11733482-11733501 | MS.gene47902:CDS | 30.0% |
| AAGCTAACACAAAGCCAAAA+AGG | - | chr4.1:11733101-11733120 | MS.gene47902:CDS | 35.0% | |
| AGCTAACACAAAGCCAAAAA+GGG | - | chr4.1:11733102-11733121 | MS.gene47902:CDS | 35.0% | |
| ATGTAAATCAACTGAATCCC+AGG | + | chr4.1:11733362-11733381 | None:intergenic | 35.0% | |
| ATGTTGGGTTAAGTGTGATT+AGG | - | chr4.1:11733288-11733307 | MS.gene47902:CDS | 35.0% | |
| ATTGAATGGAAAACGTGTCT+TGG | - | chr4.1:11733415-11733434 | MS.gene47902:CDS | 35.0% | |
| ATTTACATTGCTAGAGGAAG+TGG | - | chr4.1:11733374-11733393 | MS.gene47902:CDS | 35.0% | |
| TATGCAGATTCGAACAAAGT+GGG | - | chr4.1:11732553-11732572 | MS.gene47902:intron | 35.0% | |
| TCTTTAGTTAGGTCCAATTG+TGG | + | chr4.1:11733170-11733189 | None:intergenic | 35.0% | |
| TGTAAATCAACTGAATCCCA+GGG | + | chr4.1:11733361-11733380 | None:intergenic | 35.0% | |
| TGTTGGGTTAAGTGTGATTA+GGG | - | chr4.1:11733289-11733308 | MS.gene47902:CDS | 35.0% | |
| TTATGCAGATTCGAACAAAG+TGG | - | chr4.1:11732552-11732571 | MS.gene47902:intron | 35.0% | |
| TTGTTCGAATCTGCATAATG+AGG | + | chr4.1:11732550-11732569 | None:intergenic | 35.0% | |
| ! | AAGTTCTCAAGTTCCAGTTT+TGG | - | chr4.1:11732468-11732487 | MS.gene47902:CDS | 35.0% |
| ! | CAGTTGATTTACATTGCTAG+AGG | - | chr4.1:11733368-11733387 | MS.gene47902:CDS | 35.0% |
| ! | TGATTATCACAACCCCTTTT+TGG | + | chr4.1:11733118-11733137 | None:intergenic | 35.0% |
| ! | TTTTTCCTAAGTGGTGTTCA+AGG | - | chr4.1:11733011-11733030 | MS.gene47902:CDS | 35.0% |
| !! | AAAGTGGGTTATGTCATAGA+AGG | - | chr4.1:11732568-11732587 | MS.gene47902:intron | 35.0% |
| !! | ACATTAGTCTTAGCCAAAAC+TGG | + | chr4.1:11732484-11732503 | None:intergenic | 35.0% |
| !!! | GTTTTGGCTAAGACTAATGT+TGG | - | chr4.1:11732484-11732503 | MS.gene47902:CDS | 35.0% |
| AAAGTCCTTGAACACCACTT+AGG | + | chr4.1:11733019-11733038 | None:intergenic | 40.0% | |
| ACTTCAATAGCTCATGTTCC+AGG | - | chr4.1:11732975-11732994 | MS.gene47902:CDS | 40.0% | |
| GATGTCATACCTGTACCTAT+TGG | - | chr4.1:11732891-11732910 | MS.gene47902:CDS | 40.0% | |
| GCTAACACAAAGCCAAAAAG+GGG | - | chr4.1:11733103-11733122 | MS.gene47902:CDS | 40.0% | |
| GTAAATCAACTGAATCCCAG+GGG | + | chr4.1:11733360-11733379 | None:intergenic | 40.0% | |
| GTGACAACTACCAAGTAAGT+TGG | - | chr4.1:11733533-11733552 | MS.gene47902:intron | 40.0% | |
| GTTTCATGGTGGTTCAATGA+TGG | - | chr4.1:11732918-11732937 | MS.gene47902:CDS | 40.0% | |
| TGTCTTGGATGCTCAAGTTA+AGG | - | chr4.1:11733430-11733449 | MS.gene47902:CDS | 40.0% | |
| ! | AAAGACACTTGTTGCACAGT+AGG | + | chr4.1:11733862-11733881 | None:intergenic | 40.0% |
| ! | AACAACTTCTTTTCCAGTGC+TGG | + | chr4.1:11732853-11732872 | None:intergenic | 40.0% |
| ! | ACAACTTCTTTTCCAGTGCT+GGG | + | chr4.1:11732852-11732871 | None:intergenic | 40.0% |
| ! | CCTTTGTTTGAAGAGTTAGC+CGG | - | chr4.1:11733808-11733827 | MS.gene47902:CDS | 40.0% |
| ! | CGATCTGGAGTACGTTATTA+AGG | - | chr4.1:11733736-11733755 | MS.gene47902:intron | 40.0% |
| ! | CGTGACTAATCCCACATTTT+GGG | + | chr4.1:11733234-11733253 | None:intergenic | 40.0% |
| ! | GCAACAAGTGTCTTTTAACG+TGG | - | chr4.1:11733867-11733886 | MS.gene47902:CDS | 40.0% |
| ! | TCAACTTGTTCTTCAGCCAA+GGG | - | chr4.1:11732513-11732532 | MS.gene47902:CDS | 40.0% |
| ! | TCGTGACTAATCCCACATTT+TGG | + | chr4.1:11733235-11733254 | None:intergenic | 40.0% |
| !! | ATGGTGGTGGTTACTACATT+TGG | - | chr4.1:11732443-11732462 | MS.gene47902:CDS | 40.0% |
| !! | GAAGGTGCCTTAATAGCATT+AGG | + | chr4.1:11733326-11733345 | None:intergenic | 40.0% |
| !! | TACCTATTGGAGGTGTTTCA+TGG | - | chr4.1:11732904-11732923 | MS.gene47902:CDS | 40.0% |
| AAGACAGCACAACCATTGCT+TGG | - | chr4.1:11732415-11732434 | MS.gene47902:CDS | 45.0% | |
| ACCTATGCCTAAGCCACAAT+TGG | - | chr4.1:11733154-11733173 | MS.gene47902:CDS | 45.0% | |
| AGACAGCACAACCATTGCTT+GGG | - | chr4.1:11732416-11732435 | MS.gene47902:CDS | 45.0% | |
| AGCAATGGTTGTGCTGTCTT+CGG | + | chr4.1:11732415-11732434 | None:intergenic | 45.0% | |
| AGTTGCTGGTGAAGAAGGAA+TGG | - | chr4.1:11733496-11733515 | MS.gene47902:CDS | 45.0% | |
| CACCATGAAACACCTCCAAT+AGG | + | chr4.1:11732909-11732928 | None:intergenic | 45.0% | |
| CCGGCTAACTCTTCAAACAA+AGG | + | chr4.1:11733811-11733830 | None:intergenic | 45.0% | |
| CTTCAAACCTAACTACCCCT+GGG | - | chr4.1:11733342-11733361 | MS.gene47902:CDS | 45.0% | |
| GAAACACCTCCAATAGGTAC+AGG | + | chr4.1:11732903-11732922 | None:intergenic | 45.0% | |
| GCTAAAGTTGCTGGTGAAGA+AGG | - | chr4.1:11733491-11733510 | MS.gene47902:CDS | 45.0% | |
| GCTAAGACTAATGTTGGTGC+TGG | - | chr4.1:11732490-11732509 | MS.gene47902:CDS | 45.0% | |
| GGTCAAATTTGGCAAACGCA+GGG | - | chr4.1:11732799-11732818 | MS.gene47902:intron | 45.0% | |
| GTCATACCTGTACCTATTGG+AGG | - | chr4.1:11732894-11732913 | MS.gene47902:CDS | 45.0% | |
| GTTAGGTCCAATTGTGGCTT+AGG | + | chr4.1:11733164-11733183 | None:intergenic | 45.0% | |
| TCCAATTGTGGCTTAGGCAT+AGG | + | chr4.1:11733158-11733177 | None:intergenic | 45.0% | |
| TGGTCAAATTTGGCAAACGC+AGG | - | chr4.1:11732798-11732817 | MS.gene47902:intron | 45.0% | |
| TTGGATGCTCAAGTTAAGGC+TGG | - | chr4.1:11733434-11733453 | MS.gene47902:CDS | 45.0% | |
| TTGTTGCACAGTAGGTGACA+AGG | + | chr4.1:11733854-11733873 | None:intergenic | 45.0% | |
| ! | CAACTTCTTTTCCAGTGCTG+GGG | + | chr4.1:11732851-11732870 | None:intergenic | 45.0% |
| ! | CAACTTGTTCTTCAGCCAAG+GGG | - | chr4.1:11732514-11732533 | MS.gene47902:CDS | 45.0% |
| ! | GTCAACTTGTTCTTCAGCCA+AGG | - | chr4.1:11732512-11732531 | MS.gene47902:CDS | 45.0% |
| !! | CTATTGGAGGTGTTTCATGG+TGG | - | chr4.1:11732907-11732926 | MS.gene47902:CDS | 45.0% |
| !! | GGGATTAGTCACGACCTTAA+CGG | - | chr4.1:11733241-11733260 | MS.gene47902:CDS | 45.0% |
| !! | TTTAAATAGAATATATTTAT+CGG | - | chr4.1:11733633-11733652 | MS.gene47902:intron | 5.0% |
| !!! | ATATTATAAACAAAATTTTA+TGG | + | chr4.1:11732758-11732777 | None:intergenic | 5.0% |
| ACAGCACAACCATTGCTTGG+GGG | - | chr4.1:11732418-11732437 | MS.gene47902:CDS | 50.0% | |
| ACTGAATCCCAGGGGTAGTT+AGG | + | chr4.1:11733352-11733371 | None:intergenic | 50.0% | |
| AGCCGGAGAGACATCAGTAT+GGG | - | chr4.1:11733825-11733844 | MS.gene47902:CDS | 50.0% | |
| CCAGGGGTAGTTAGGTTTGA+AGG | + | chr4.1:11733344-11733363 | None:intergenic | 50.0% | |
| CCTTCAAACCTAACTACCCC+TGG | - | chr4.1:11733341-11733360 | MS.gene47902:CDS | 50.0% | |
| GACAGCACAACCATTGCTTG+GGG | - | chr4.1:11732417-11732436 | MS.gene47902:CDS | 50.0% | |
| GGTAGGGAGAATGAGACTTG+TGG | + | chr4.1:11733935-11733954 | None:intergenic | 50.0% | |
| TAGCCGGAGAGACATCAGTA+TGG | - | chr4.1:11733824-11733843 | MS.gene47902:CDS | 50.0% | |
| TCCCCATACTGATGTCTCTC+CGG | + | chr4.1:11733830-11733849 | None:intergenic | 50.0% | |
| TGAGGAAGAGCAAATCCCCT+TGG | + | chr4.1:11732532-11732551 | None:intergenic | 50.0% | |
| ! | GACTGATGGCGTAGTTGGAA+TGG | - | chr4.1:11732821-11732840 | MS.gene47902:CDS | 50.0% |
| CAACCATTGCTTGGGGGAGA+TGG | - | chr4.1:11732424-11732443 | MS.gene47902:CDS | 55.0% | |
| GCCGGAGAGACATCAGTATG+GGG | - | chr4.1:11733826-11733845 | MS.gene47902:CDS | 55.0% | |
| TTGGCAAACGCAGGGACTGA+TGG | - | chr4.1:11732807-11732826 | MS.gene47902:intron | 55.0% | |
| CCACCATCTCCCCCAAGCAA+TGG | + | chr4.1:11732430-11732449 | None:intergenic | 60.0% | |
| CCATTGCTTGGGGGAGATGG+TGG | - | chr4.1:11732427-11732446 | MS.gene47902:CDS | 60.0% | |
| GGAATGGTACTCCCCAGCAC+TGG | - | chr4.1:11732837-11732856 | MS.gene47902:CDS | 60.0% | |
| ! | GCAGGGACTGATGGCGTAGT+TGG | - | chr4.1:11732816-11732835 | MS.gene47902:CDS | 60.0% |
| ! | TTGCTTGGGGGAGATGGTGG+TGG | - | chr4.1:11732430-11732449 | MS.gene47902:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 11732394 | 11733960 | 11732394 | ID=MS.gene47902 |
| chr4.1 | mRNA | 11732394 | 11733960 | 11732394 | ID=MS.gene47902.t1;Parent=MS.gene47902 |
| chr4.1 | exon | 11733765 | 11733960 | 11733765 | ID=MS.gene47902.t1.exon1;Parent=MS.gene47902.t1 |
| chr4.1 | CDS | 11733765 | 11733960 | 11733765 | ID=cds.MS.gene47902.t1;Parent=MS.gene47902.t1 |
| chr4.1 | exon | 11732808 | 11733534 | 11732808 | ID=MS.gene47902.t1.exon2;Parent=MS.gene47902.t1 |
| chr4.1 | CDS | 11732808 | 11733534 | 11732808 | ID=cds.MS.gene47902.t1;Parent=MS.gene47902.t1 |
| chr4.1 | exon | 11732394 | 11732547 | 11732394 | ID=MS.gene47902.t1.exon3;Parent=MS.gene47902.t1 |
| chr4.1 | CDS | 11732394 | 11732547 | 11732394 | ID=cds.MS.gene47902.t1;Parent=MS.gene47902.t1 |
| Gene Sequence |
| Protein sequence |
