Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67222.t1 | BAU98053.1 | 99.4 | 358 | 2 | 0 | 1 | 358 | 1 | 358 | 4.20E-199 | 703.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67222.t1 | Q9XHP0 | 22.5 | 395 | 234 | 11 | 10 | 335 | 42 | 433 | 1.3e-23 | 112.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67222.t1 | A0A161JQR4 | 99.4 | 358 | 2 | 0 | 1 | 358 | 1 | 358 | 3.1e-199 | 703.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050082 | MS.gene67222 | 0.840618 | 7.80E-58 | -1.69E-46 |
| MS.gene050170 | MS.gene67222 | -0.804976 | 1.67E-49 | -1.69E-46 |
| MS.gene050338 | MS.gene67222 | 0.847988 | 8.16E-60 | -1.69E-46 |
| MS.gene050496 | MS.gene67222 | -0.811589 | 6.49E-51 | -1.69E-46 |
| MS.gene050521 | MS.gene67222 | 0.808857 | 2.52E-50 | -1.69E-46 |
| MS.gene051364 | MS.gene67222 | 0.82543 | 4.71E-54 | -1.69E-46 |
| MS.gene051366 | MS.gene67222 | 0.822963 | 1.79E-53 | -1.69E-46 |
| MS.gene051367 | MS.gene67222 | 0.83396 | 3.95E-56 | -1.69E-46 |
| MS.gene051422 | MS.gene67222 | 0.854672 | 1.05E-61 | -1.69E-46 |
| MS.gene051648 | MS.gene67222 | 0.804983 | 1.66E-49 | -1.69E-46 |
| MS.gene051651 | MS.gene67222 | 0.800028 | 1.75E-48 | -1.69E-46 |
| MS.gene051718 | MS.gene67222 | 0.838662 | 2.52E-57 | -1.69E-46 |
| MS.gene052383 | MS.gene67222 | 0.810367 | 1.19E-50 | -1.69E-46 |
| MS.gene052707 | MS.gene67222 | 0.825553 | 4.40E-54 | -1.69E-46 |
| MS.gene052708 | MS.gene67222 | 0.801272 | 9.74E-49 | -1.69E-46 |
| MS.gene052710 | MS.gene67222 | 0.825928 | 3.59E-54 | -1.69E-46 |
| MS.gene053568 | MS.gene67222 | 0.800516 | 1.39E-48 | -1.69E-46 |
| MS.gene055251 | MS.gene67222 | 0.857478 | 1.59E-62 | -1.69E-46 |
| MS.gene05589 | MS.gene67222 | -0.806528 | 7.87E-50 | -1.69E-46 |
| MS.gene056266 | MS.gene67222 | -0.803844 | 2.87E-49 | -1.69E-46 |
| MS.gene056354 | MS.gene67222 | 0.825226 | 5.26E-54 | -1.69E-46 |
| MS.gene056697 | MS.gene67222 | 0.802461 | 5.55E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene67222 | 0.8268 | 2.22E-54 | -1.69E-46 |
| MS.gene057549 | MS.gene67222 | 0.804965 | 1.68E-49 | -1.69E-46 |
| MS.gene058015 | MS.gene67222 | 0.827897 | 1.21E-54 | -1.69E-46 |
| MS.gene058334 | MS.gene67222 | 0.826652 | 2.41E-54 | -1.69E-46 |
| MS.gene058382 | MS.gene67222 | 0.878668 | 2.33E-69 | -1.69E-46 |
| MS.gene058386 | MS.gene67222 | 0.842339 | 2.75E-58 | -1.69E-46 |
| MS.gene059685 | MS.gene67222 | 0.807314 | 5.37E-50 | -1.69E-46 |
| MS.gene060076 | MS.gene67222 | 0.827167 | 1.82E-54 | -1.69E-46 |
| MS.gene06042 | MS.gene67222 | 0.819104 | 1.38E-52 | -1.69E-46 |
| MS.gene060561 | MS.gene67222 | 0.815879 | 7.37E-52 | -1.69E-46 |
| MS.gene060823 | MS.gene67222 | 0.806419 | 8.30E-50 | -1.69E-46 |
| MS.gene061044 | MS.gene67222 | 0.842042 | 3.29E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67222.t1 | MTR_8g088860 | 93.872 | 359 | 21 | 1 | 1 | 358 | 1 | 359 | 0.0 | 674 |
| MS.gene67222.t1 | MTR_8g088880 | 84.916 | 358 | 54 | 0 | 1 | 358 | 1 | 358 | 0.0 | 608 |
| MS.gene67222.t1 | MTR_8g088890 | 71.667 | 300 | 85 | 0 | 29 | 328 | 1 | 300 | 5.38e-156 | 441 |
| MS.gene67222.t1 | MTR_4g062570 | 42.697 | 356 | 202 | 2 | 1 | 356 | 1 | 354 | 1.10e-105 | 314 |
| MS.gene67222.t1 | MTR_4g072780 | 42.416 | 356 | 203 | 2 | 1 | 356 | 1 | 354 | 1.60e-104 | 311 |
| MS.gene67222.t1 | MTR_4g062550 | 42.135 | 356 | 204 | 2 | 1 | 356 | 1 | 354 | 3.39e-104 | 310 |
| MS.gene67222.t1 | MTR_4g032360 | 42.416 | 356 | 203 | 2 | 1 | 356 | 1 | 354 | 7.75e-104 | 310 |
| MS.gene67222.t1 | MTR_5g022720 | 34.884 | 258 | 136 | 4 | 96 | 348 | 33 | 263 | 1.18e-42 | 149 |
| MS.gene67222.t1 | MTR_4g076710 | 74.419 | 43 | 11 | 0 | 73 | 115 | 1 | 43 | 5.91e-17 | 74.3 |
| MS.gene67222.t1 | MTR_7g097000 | 30.435 | 138 | 95 | 1 | 199 | 336 | 367 | 503 | 1.13e-12 | 69.3 |
| MS.gene67222.t1 | MTR_1g072630 | 31.944 | 144 | 87 | 3 | 200 | 333 | 410 | 552 | 7.70e-12 | 67.0 |
| MS.gene67222.t1 | MTR_1g072600 | 35.185 | 108 | 69 | 1 | 200 | 307 | 426 | 532 | 1.34e-11 | 66.2 |
| MS.gene67222.t1 | MTR_1g072610 | 34.545 | 110 | 71 | 1 | 198 | 307 | 393 | 501 | 1.59e-11 | 65.9 |
| MS.gene67222.t1 | MTR_2g093550 | 27.746 | 173 | 110 | 7 | 191 | 358 | 66 | 228 | 2.19e-11 | 63.5 |
| MS.gene67222.t1 | MTR_7g096990 | 28.671 | 143 | 101 | 1 | 194 | 336 | 356 | 497 | 4.69e-11 | 64.3 |
| MS.gene67222.t1 | MTR_2g093630 | 28.488 | 172 | 108 | 7 | 191 | 357 | 55 | 216 | 5.17e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67222.t1 | AT1G07750 | 41.972 | 355 | 202 | 3 | 1 | 355 | 1 | 351 | 1.78e-99 | 298 |
| MS.gene67222.t1 | AT2G28680 | 41.737 | 357 | 206 | 2 | 1 | 357 | 1 | 355 | 1.26e-98 | 296 |
| MS.gene67222.t1 | AT1G03890 | 25.616 | 406 | 225 | 14 | 17 | 352 | 53 | 451 | 3.06e-22 | 97.8 |
| MS.gene67222.t1 | AT5G44120 | 23.245 | 413 | 236 | 12 | 13 | 351 | 49 | 454 | 7.79e-20 | 90.9 |
| MS.gene67222.t1 | AT1G03880 | 22.469 | 405 | 242 | 10 | 13 | 351 | 43 | 441 | 1.05e-19 | 90.5 |
| MS.gene67222.t1 | AT2G28490 | 23.373 | 415 | 244 | 14 | 8 | 357 | 89 | 494 | 3.78e-16 | 80.1 |
| MS.gene67222.t1 | AT5G44120 | 32.484 | 157 | 105 | 1 | 195 | 351 | 112 | 267 | 4.78e-16 | 77.8 |
| MS.gene67222.t1 | AT5G44120 | 32.484 | 157 | 105 | 1 | 195 | 351 | 195 | 350 | 1.20e-15 | 77.8 |
| MS.gene67222.t1 | AT4G28520 | 31.847 | 157 | 106 | 1 | 195 | 351 | 350 | 505 | 1.67e-14 | 75.1 |
| MS.gene67222.t1 | AT4G28520 | 32.484 | 157 | 105 | 1 | 195 | 351 | 279 | 434 | 4.12e-14 | 73.6 |
Find 77 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTTAACATTATATTTCT+TGG | 0.148846 | 4.2:-12497542 | MS.gene67222:CDS |
| TTGTGACTAATCCCACATTT+TGG | 0.188452 | 4.2:+12497258 | None:intergenic |
| ACTTGAACCTAATGCTATTA+AGG | 0.231472 | 4.2:-12497174 | MS.gene67222:CDS |
| AACCCAACATCCTTAATAAA+AGG | 0.256810 | 4.2:+12497215 | None:intergenic |
| ACTGAATCGCAGGGGTAATT+AGG | 0.266264 | 4.2:+12497141 | None:intergenic |
| AAGCTCACACAAAGCCAAAA+AGG | 0.266595 | 4.2:-12497389 | MS.gene67222:CDS |
| TGTTGGGTTAAGTGTGATTA+GGG | 0.277054 | 4.2:-12497201 | MS.gene67222:CDS |
| ATGTTGGGTTAAGTGTGATT+AGG | 0.298094 | 4.2:-12497202 | MS.gene67222:CDS |
| AGGAAAATCTTTATCCGTTA+AGG | 0.313076 | 4.2:+12497235 | None:intergenic |
| TATAAACAAGTCAAACTAAA+TGG | 0.330642 | 4.2:+12496537 | None:intergenic |
| CTAGAAGAAATCAATGGATT+TGG | 0.338018 | 4.2:-12498281 | None:intergenic |
| GTGATAATCAAGTTAGAAAA+AGG | 0.339715 | 4.2:-12497362 | MS.gene67222:CDS |
| TACCTATTGGAGGTGTTTCA+TGG | 0.356456 | 4.2:-12497586 | MS.gene67222:CDS |
| TTTGTGGTTGCTAAAGTTGC+TGG | 0.378074 | 4.2:-12497008 | MS.gene67222:CDS |
| ATGGTGGTGGTTACTACATT+TGG | 0.379198 | 4.2:-12498219 | MS.gene67222:CDS |
| ACATTAGTCTTAGCCAAAAC+TGG | 0.384648 | 4.2:+12498181 | None:intergenic |
| ATAGAAATTGTGGGATTGAA+TGG | 0.390973 | 4.2:-12497089 | MS.gene67222:CDS |
| GAAGGTGCCTTAATAGCATT+AGG | 0.400052 | 4.2:+12497167 | None:intergenic |
| CATAAACAAAGTCTTTAGTT+AGG | 0.401436 | 4.2:+12497312 | None:intergenic |
| ACTTCAATAGCTCATGTTCC+AGG | 0.412111 | 4.2:-12497515 | MS.gene67222:CDS |
| ATTTACATTGCTAGAGGAAG+TGG | 0.419131 | 4.2:-12497116 | MS.gene67222:CDS |
| ACCTATGCCTAAGCCACAAT+TGG | 0.420447 | 4.2:-12497336 | MS.gene67222:CDS |
| AAGTTCTCAAGTTCCAGTTT+TGG | 0.422771 | 4.2:-12498194 | MS.gene67222:CDS |
| TAGCCGGAGAGACATCAGTA+TGG | 0.435918 | 4.2:-12496666 | MS.gene67222:CDS |
| GTTAGGTCCAATTGTGGCTT+AGG | 0.462868 | 4.2:+12497329 | None:intergenic |
| GTCAACTTGTTCTTCAGCCA+AGG | 0.466314 | 4.2:-12498150 | MS.gene67222:CDS |
| GGGATTAGTCACAACCTTAA+CGG | 0.468943 | 4.2:-12497249 | MS.gene67222:CDS |
| AGCAATGGTTGTGCTGTCTT+CGG | 0.471177 | 4.2:+12498250 | None:intergenic |
| GATGTCATACCTGTACCTAT+TGG | 0.485348 | 4.2:-12497599 | MS.gene67222:CDS |
| GCAGGGACTGATGGTGTAGT+TGG | 0.493416 | 4.2:-12497674 | MS.gene67222:intron |
| TGTCTTGGATGCTCAAGTTA+AGG | 0.494376 | 4.2:-12497060 | MS.gene67222:CDS |
| GCTAAAGTTGCTGGTGAAGA+TGG | 0.496979 | 4.2:-12496999 | MS.gene67222:CDS |
| ATGTAAATCAACTGAATCGC+AGG | 0.497055 | 4.2:+12497131 | None:intergenic |
| AAAGTGGGTTATGTCATAGA+AGG | 0.498483 | 4.2:-12498094 | MS.gene67222:intron |
| GCAGGGGTAATTAGGTTTGA+AGG | 0.504754 | 4.2:+12497149 | None:intergenic |
| CACCATGAAACACCTCCAAT+AGG | 0.508936 | 4.2:+12497584 | None:intergenic |
| AGCCGGAGAGACATCAGTAT+GGG | 0.531399 | 4.2:-12496665 | MS.gene67222:CDS |
| AACAAGTCAAACTAAATGGT+AGG | 0.531603 | 4.2:+12496541 | None:intergenic |
| AAAGACACTTGTTGCACAGT+AGG | 0.532747 | 4.2:+12496631 | None:intergenic |
| GTTTCATGGTGGTTCAATGA+TGG | 0.534589 | 4.2:-12497572 | MS.gene67222:CDS |
| GCTAAGACTAATGTTGGTGC+TGG | 0.541420 | 4.2:-12498172 | MS.gene67222:CDS |
| CAACCATTGCTTGAGGGAGA+TGG | 0.544530 | 4.2:-12498238 | MS.gene67222:CDS |
| TCAACTTGTTCTTCAGCCAA+GGG | 0.545644 | 4.2:-12498149 | MS.gene67222:CDS |
| ATTGAATGGAAAACGTGTCT+TGG | 0.545710 | 4.2:-12497075 | MS.gene67222:CDS |
| TTGTCAAACGCAGGGACTGA+TGG | 0.552548 | 4.2:-12497683 | MS.gene67222:intron |
| TTGGATGCTCAAGTTAAGGC+TGG | 0.552687 | 4.2:-12497056 | MS.gene67222:CDS |
| AGATATTAAGGCCCAAAATG+TGG | 0.553793 | 4.2:-12497270 | MS.gene67222:CDS |
| TTGTTCGAATCTGCATAATG+AGG | 0.553966 | 4.2:+12498115 | None:intergenic |
| CCTTTGTTTGAAGAGTTAGC+CGG | 0.556322 | 4.2:-12496682 | MS.gene67222:CDS |
| GTCATACCTGTACCTATTGG+AGG | 0.560557 | 4.2:-12497596 | MS.gene67222:CDS |
| TCCAATTGTGGCTTAGGCAT+AGG | 0.563240 | 4.2:+12497335 | None:intergenic |
| TTGCTTGAGGGAGATGGTGG+TGG | 0.563550 | 4.2:-12498232 | MS.gene67222:CDS |
| TCCCCATACTGATGTCTCTC+CGG | 0.565683 | 4.2:+12496663 | None:intergenic |
| GGAATGGTACTCCCCAGCAC+TGG | 0.566146 | 4.2:-12497653 | MS.gene67222:CDS |
| ACAGCACAACCATTGCTTGA+GGG | 0.569100 | 4.2:-12498244 | MS.gene67222:CDS |
| AAAGTCCTTGAACACCACTT+AGG | 0.569759 | 4.2:+12497474 | None:intergenic |
| GAAACACCTCCAATAGGTAC+AGG | 0.571470 | 4.2:+12497590 | None:intergenic |
| ACAAGTCAAACTAAATGGTA+GGG | 0.575189 | 4.2:+12496542 | None:intergenic |
| TCTTTAGTTAGGTCCAATTG+TGG | 0.584862 | 4.2:+12497323 | None:intergenic |
| AGTTGCTGGTGAAGATGGAA+TGG | 0.592132 | 4.2:-12496994 | MS.gene67222:CDS |
| GATATTAAGGCCCAAAATGT+GGG | 0.596263 | 4.2:-12497269 | MS.gene67222:CDS |
| CAGTTGATTTACATTGCTAG+AGG | 0.600562 | 4.2:-12497122 | MS.gene67222:CDS |
| TGTAAATCAACTGAATCGCA+GGG | 0.608323 | 4.2:+12497132 | None:intergenic |
| CCACCATCTCCCTCAAGCAA+TGG | 0.609709 | 4.2:+12498235 | None:intergenic |
| TGAGGAAGAGCAAATCCCCT+TGG | 0.612076 | 4.2:+12498133 | None:intergenic |
| TATGCAGATTCGAACAAAGT+GGG | 0.614043 | 4.2:-12498109 | MS.gene67222:CDS |
| GACTGATGGTGTAGTTGGAA+TGG | 0.615110 | 4.2:-12497669 | MS.gene67222:CDS |
| GGTAGGGAGAATGAGACTTG+TGG | 0.625569 | 4.2:+12496558 | None:intergenic |
| TTATGCAGATTCGAACAAAG+TGG | 0.626214 | 4.2:-12498110 | MS.gene67222:CDS |
| CAACTTGTTCTTCAGCCAAG+GGG | 0.631432 | 4.2:-12498148 | MS.gene67222:CDS |
| CCGGCTAACTCTTCAAACAA+AGG | 0.634501 | 4.2:+12496682 | None:intergenic |
| GACAGCACAACCATTGCTTG+AGG | 0.639965 | 4.2:-12498245 | MS.gene67222:CDS |
| CTATTGGAGGTGTTTCATGG+TGG | 0.653727 | 4.2:-12497583 | MS.gene67222:CDS |
| CCATTGCTTGAGGGAGATGG+TGG | 0.656696 | 4.2:-12498235 | MS.gene67222:CDS |
| TTGTTGCACAGTAGGTGACA+AGG | 0.665977 | 4.2:+12496639 | None:intergenic |
| GCCGGAGAGACATCAGTATG+GGG | 0.687095 | 4.2:-12496664 | MS.gene67222:CDS |
| GTAAATCAACTGAATCGCAG+GGG | 0.708656 | 4.2:+12497133 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATAATTTTTTAATAAT+TGG | + | chr4.2:12496856-12496875 | None:intergenic | 0.0% |
| !!! | AAAACAAAATTTTAACAATA+TGG | + | chr4.2:12497038-12497057 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTGACAAAAAAT+GGG | + | chr4.2:12496895-12496914 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTGACAAAAAA+TGG | + | chr4.2:12496896-12496915 | None:intergenic | 10.0% |
| !!! | ATACAATTTTAATAAAGATG+AGG | - | chr4.2:12497403-12497422 | MS.gene67222:CDS | 15.0% |
| !!! | ATTTGAAATTATTTTCGATT+TGG | - | chr4.2:12498051-12498070 | MS.gene67222:intron | 15.0% |
| !!! | TAAAGATTTTCCTTTTATTA+AGG | - | chr4.2:12497595-12497614 | MS.gene67222:CDS | 15.0% |
| !! | GATCTTAACATTATATTTCT+TGG | - | chr4.2:12497278-12497297 | MS.gene67222:CDS | 20.0% |
| !! | TGAATGAAAATTGAATTCTT+CGG | + | chr4.2:12497986-12498005 | None:intergenic | 20.0% |
| !!! | TTTTGATTCACAAATCAATT+TGG | - | chr4.2:12498017-12498036 | MS.gene67222:intron | 20.0% |
| ! | AAAAAATAAGTGAATTCTCC+TGG | + | chr4.2:12497326-12497345 | None:intergenic | 25.0% |
| ! | AAGTGGAAAAATAGAAATTG+TGG | - | chr4.2:12497721-12497740 | MS.gene67222:intron | 25.0% |
| ! | AGTGGAAAAATAGAAATTGT+GGG | - | chr4.2:12497722-12497741 | MS.gene67222:intron | 25.0% |
| ! | ATCTCTTAGATTTAATCTGT+TGG | - | chr4.2:12496783-12496802 | MS.gene67222:intron | 25.0% |
| ! | CATAAACAAAGTCTTTAGTT+AGG | + | chr4.2:12497511-12497530 | None:intergenic | 25.0% |
| ! | GTGATAATCAAGTTAGAAAA+AGG | - | chr4.2:12497458-12497477 | MS.gene67222:CDS | 25.0% |
| ! | TATGGAAAATCTTCATTCTA+GGG | + | chr4.2:12497082-12497101 | None:intergenic | 25.0% |
| ! | TGCTAAAAAACCAGATATTA+AGG | - | chr4.2:12497538-12497557 | MS.gene67222:CDS | 25.0% |
| ! | TTATGGAAAATCTTCATTCT+AGG | + | chr4.2:12497083-12497102 | None:intergenic | 25.0% |
| !! | ATGTTGCGATACATATTTTA+TGG | + | chr4.2:12497100-12497119 | None:intergenic | 25.0% |
| !! | TTCCTTTTATTAAGGATGTT+GGG | - | chr4.2:12497603-12497622 | MS.gene67222:CDS | 25.0% |
| !! | TTTCCTTTTATTAAGGATGT+TGG | - | chr4.2:12497602-12497621 | MS.gene67222:CDS | 25.0% |
| !!! | CAATAGAAACATCCATTTTT+AGG | + | chr4.2:12496939-12496958 | None:intergenic | 25.0% |
| !!! | CCATTTTTAGGTACTTAAAT+GGG | + | chr4.2:12496927-12496946 | None:intergenic | 25.0% |
| !!! | TCCATTTTTAGGTACTTAAA+TGG | + | chr4.2:12496928-12496947 | None:intergenic | 25.0% |
| !!! | TTCACTTATTTTTTCCTAAG+TGG | - | chr4.2:12497332-12497351 | MS.gene67222:CDS | 25.0% |
| AACCCAACATCCTTAATAAA+AGG | + | chr4.2:12497608-12497627 | None:intergenic | 30.0% | |
| ACTTGAACCTAATGCTATTA+AGG | - | chr4.2:12497646-12497665 | MS.gene67222:CDS | 30.0% | |
| AGGAAAATCTTTATCCGTTA+AGG | + | chr4.2:12497588-12497607 | None:intergenic | 30.0% | |
| ATAGAAATTGTGGGATTGAA+TGG | - | chr4.2:12497731-12497750 | MS.gene67222:intron | 30.0% | |
| CCCATTTAAGTACCTAAAAA+TGG | - | chr4.2:12496924-12496943 | MS.gene67222:intron | 30.0% | |
| TTAGCAACCACAAAAAATTG+TGG | + | chr4.2:12497806-12497825 | None:intergenic | 30.0% | |
| ! | GTTTAAAACTCCAACTTACT+TGG | + | chr4.2:12497876-12497895 | None:intergenic | 30.0% |
| !!! | GTTGTTTTGAAGCTTAAGAA+AGG | - | chr4.2:12497197-12497216 | MS.gene67222:CDS | 30.0% |
| AGATATTAAGGCCCAAAATG+TGG | - | chr4.2:12497550-12497569 | MS.gene67222:CDS | 35.0% | |
| ATGTAAATCAACTGAATCGC+AGG | + | chr4.2:12497692-12497711 | None:intergenic | 35.0% | |
| ATGTTGGGTTAAGTGTGATT+AGG | - | chr4.2:12497618-12497637 | MS.gene67222:CDS | 35.0% | |
| ATTGAATGGAAAACGTGTCT+TGG | - | chr4.2:12497745-12497764 | MS.gene67222:intron | 35.0% | |
| ATTTACATTGCTAGAGGAAG+TGG | - | chr4.2:12497704-12497723 | MS.gene67222:intron | 35.0% | |
| GATATTAAGGCCCAAAATGT+GGG | - | chr4.2:12497551-12497570 | MS.gene67222:CDS | 35.0% | |
| GTATCGCAACATCACTTATT+TGG | - | chr4.2:12497108-12497127 | MS.gene67222:CDS | 35.0% | |
| TATGCAGATTCGAACAAAGT+GGG | - | chr4.2:12496711-12496730 | MS.gene67222:intron | 35.0% | |
| TCTTTAGTTAGGTCCAATTG+TGG | + | chr4.2:12497500-12497519 | None:intergenic | 35.0% | |
| TGTAAATCAACTGAATCGCA+GGG | + | chr4.2:12497691-12497710 | None:intergenic | 35.0% | |
| TGTTGGGTTAAGTGTGATTA+GGG | - | chr4.2:12497619-12497638 | MS.gene67222:CDS | 35.0% | |
| TTATGCAGATTCGAACAAAG+TGG | - | chr4.2:12496710-12496729 | MS.gene67222:intron | 35.0% | |
| TTGTTCGAATCTGCATAATG+AGG | + | chr4.2:12496708-12496727 | None:intergenic | 35.0% | |
| ! | AAGTTCTCAAGTTCCAGTTT+TGG | - | chr4.2:12496626-12496645 | MS.gene67222:CDS | 35.0% |
| ! | ACATTTTGGGCCTTAATATC+TGG | + | chr4.2:12497551-12497570 | None:intergenic | 35.0% |
| ! | CAGTTGATTTACATTGCTAG+AGG | - | chr4.2:12497698-12497717 | MS.gene67222:intron | 35.0% |
| ! | CGATTTGGAGTACGTTATTA+AGG | - | chr4.2:12498066-12498085 | MS.gene67222:intron | 35.0% |
| ! | GGACTTTTATCAAGTTTCTC+TGG | - | chr4.2:12497362-12497381 | MS.gene67222:CDS | 35.0% |
| ! | TGATTATCACAACCCCTTTT+TGG | + | chr4.2:12497448-12497467 | None:intergenic | 35.0% |
| ! | TGTGACTAATCCCACATTTT+GGG | + | chr4.2:12497564-12497583 | None:intergenic | 35.0% |
| ! | TTGTGACTAATCCCACATTT+TGG | + | chr4.2:12497565-12497584 | None:intergenic | 35.0% |
| ! | TTTTTCCTAAGTGGTGTTCA+AGG | - | chr4.2:12497341-12497360 | MS.gene67222:CDS | 35.0% |
| !! | AAAGTGGGTTATGTCATAGA+AGG | - | chr4.2:12496726-12496745 | MS.gene67222:intron | 35.0% |
| !! | ACATTAGTCTTAGCCAAAAC+TGG | + | chr4.2:12496642-12496661 | None:intergenic | 35.0% |
| !!! | GTTTTGGCTAAGACTAATGT+TGG | - | chr4.2:12496642-12496661 | MS.gene67222:CDS | 35.0% |
| !!! | TGTTGTGCCACAATTTTTTG+TGG | - | chr4.2:12497796-12497815 | MS.gene67222:intron | 35.0% |
| AAAGTCCTTGAACACCACTT+AGG | + | chr4.2:12497349-12497368 | None:intergenic | 40.0% | |
| AAGCTCACACAAAGCCAAAA+AGG | - | chr4.2:12497431-12497450 | MS.gene67222:CDS | 40.0% | |
| ACTTCAATAGCTCATGTTCC+AGG | - | chr4.2:12497305-12497324 | MS.gene67222:CDS | 40.0% | |
| AGCTCACACAAAGCCAAAAA+GGG | - | chr4.2:12497432-12497451 | MS.gene67222:CDS | 40.0% | |
| GATGTCATACCTGTACCTAT+TGG | - | chr4.2:12497221-12497240 | MS.gene67222:CDS | 40.0% | |
| GGTCAAATTTGTCAAACGCA+GGG | - | chr4.2:12497129-12497148 | MS.gene67222:CDS | 40.0% | |
| GTAAATCAACTGAATCGCAG+GGG | + | chr4.2:12497690-12497709 | None:intergenic | 40.0% | |
| GTGACAACTACCAAGTAAGT+TGG | - | chr4.2:12497863-12497882 | MS.gene67222:intron | 40.0% | |
| GTTTCATGGTGGTTCAATGA+TGG | - | chr4.2:12497248-12497267 | MS.gene67222:CDS | 40.0% | |
| TGGTCAAATTTGTCAAACGC+AGG | - | chr4.2:12497128-12497147 | MS.gene67222:CDS | 40.0% | |
| TGTCTTGGATGCTCAAGTTA+AGG | - | chr4.2:12497760-12497779 | MS.gene67222:intron | 40.0% | |
| TTTGTGGTTGCTAAAGTTGC+TGG | - | chr4.2:12497812-12497831 | MS.gene67222:intron | 40.0% | |
| ! | AAAGACACTTGTTGCACAGT+AGG | + | chr4.2:12498192-12498211 | None:intergenic | 40.0% |
| ! | AACAACTTCTTTTCCAGTGC+TGG | + | chr4.2:12497183-12497202 | None:intergenic | 40.0% |
| ! | ACAACTTCTTTTCCAGTGCT+GGG | + | chr4.2:12497182-12497201 | None:intergenic | 40.0% |
| ! | CCTTTGTTTGAAGAGTTAGC+CGG | - | chr4.2:12498138-12498157 | MS.gene67222:CDS | 40.0% |
| ! | GCAACAAGTGTCTTTTAACG+TGG | - | chr4.2:12498197-12498216 | MS.gene67222:CDS | 40.0% |
| ! | TCAACTTGTTCTTCAGCCAA+GGG | - | chr4.2:12496671-12496690 | MS.gene67222:CDS | 40.0% |
| !! | ATGGTGGTGGTTACTACATT+TGG | - | chr4.2:12496601-12496620 | MS.gene67222:CDS | 40.0% |
| !! | GAAGGTGCCTTAATAGCATT+AGG | + | chr4.2:12497656-12497675 | None:intergenic | 40.0% |
| !! | GGGATTAGTCACAACCTTAA+CGG | - | chr4.2:12497571-12497590 | MS.gene67222:CDS | 40.0% |
| !! | TACCTATTGGAGGTGTTTCA+TGG | - | chr4.2:12497234-12497253 | MS.gene67222:CDS | 40.0% |
| !!! | TTTTTGGCTTTGTGTGAGCT+TGG | + | chr4.2:12497432-12497451 | None:intergenic | 40.0% |
| ACAGCACAACCATTGCTTGA+GGG | - | chr4.2:12496576-12496595 | MS.gene67222:CDS | 45.0% | |
| ACCTATGCCTAAGCCACAAT+TGG | - | chr4.2:12497484-12497503 | MS.gene67222:CDS | 45.0% | |
| ACTGAATCGCAGGGGTAATT+AGG | + | chr4.2:12497682-12497701 | None:intergenic | 45.0% | |
| AGCAATGGTTGTGCTGTCTT+CGG | + | chr4.2:12496573-12496592 | None:intergenic | 45.0% | |
| AGTTGCTGGTGAAGATGGAA+TGG | - | chr4.2:12497826-12497845 | MS.gene67222:intron | 45.0% | |
| CACCATGAAACACCTCCAAT+AGG | + | chr4.2:12497239-12497258 | None:intergenic | 45.0% | |
| CCGGCTAACTCTTCAAACAA+AGG | + | chr4.2:12498141-12498160 | None:intergenic | 45.0% | |
| GAAACACCTCCAATAGGTAC+AGG | + | chr4.2:12497233-12497252 | None:intergenic | 45.0% | |
| GCAGGGGTAATTAGGTTTGA+AGG | + | chr4.2:12497674-12497693 | None:intergenic | 45.0% | |
| GCTAAAGTTGCTGGTGAAGA+TGG | - | chr4.2:12497821-12497840 | MS.gene67222:intron | 45.0% | |
| GCTAAGACTAATGTTGGTGC+TGG | - | chr4.2:12496648-12496667 | MS.gene67222:CDS | 45.0% | |
| GCTCACACAAAGCCAAAAAG+GGG | - | chr4.2:12497433-12497452 | MS.gene67222:CDS | 45.0% | |
| GTCATACCTGTACCTATTGG+AGG | - | chr4.2:12497224-12497243 | MS.gene67222:CDS | 45.0% | |
| GTTAGGTCCAATTGTGGCTT+AGG | + | chr4.2:12497494-12497513 | None:intergenic | 45.0% | |
| TCCAATTGTGGCTTAGGCAT+AGG | + | chr4.2:12497488-12497507 | None:intergenic | 45.0% | |
| TTGGATGCTCAAGTTAAGGC+TGG | - | chr4.2:12497764-12497783 | MS.gene67222:intron | 45.0% | |
| TTGTTGCACAGTAGGTGACA+AGG | + | chr4.2:12498184-12498203 | None:intergenic | 45.0% | |
| ! | CAACTTCTTTTCCAGTGCTG+GGG | + | chr4.2:12497181-12497200 | None:intergenic | 45.0% |
| ! | CAACTTGTTCTTCAGCCAAG+GGG | - | chr4.2:12496672-12496691 | MS.gene67222:CDS | 45.0% |
| ! | GACTGATGGTGTAGTTGGAA+TGG | - | chr4.2:12497151-12497170 | MS.gene67222:CDS | 45.0% |
| ! | GTCAACTTGTTCTTCAGCCA+AGG | - | chr4.2:12496670-12496689 | MS.gene67222:CDS | 45.0% |
| !! | CTATTGGAGGTGTTTCATGG+TGG | - | chr4.2:12497237-12497256 | MS.gene67222:CDS | 45.0% |
| AGCCGGAGAGACATCAGTAT+GGG | - | chr4.2:12498155-12498174 | MS.gene67222:CDS | 50.0% | |
| CAACCATTGCTTGAGGGAGA+TGG | - | chr4.2:12496582-12496601 | MS.gene67222:CDS | 50.0% | |
| GACAGCACAACCATTGCTTG+AGG | - | chr4.2:12496575-12496594 | MS.gene67222:CDS | 50.0% | |
| GGTAGGGAGAATGAGACTTG+TGG | + | chr4.2:12498265-12498284 | None:intergenic | 50.0% | |
| TAGCCGGAGAGACATCAGTA+TGG | - | chr4.2:12498154-12498173 | MS.gene67222:CDS | 50.0% | |
| TCCCCATACTGATGTCTCTC+CGG | + | chr4.2:12498160-12498179 | None:intergenic | 50.0% | |
| TGAGGAAGAGCAAATCCCCT+TGG | + | chr4.2:12496690-12496709 | None:intergenic | 50.0% | |
| TTGTCAAACGCAGGGACTGA+TGG | - | chr4.2:12497137-12497156 | MS.gene67222:CDS | 50.0% | |
| CCACCATCTCCCTCAAGCAA+TGG | + | chr4.2:12496588-12496607 | None:intergenic | 55.0% | |
| CCATTGCTTGAGGGAGATGG+TGG | - | chr4.2:12496585-12496604 | MS.gene67222:CDS | 55.0% | |
| GCCGGAGAGACATCAGTATG+GGG | - | chr4.2:12498156-12498175 | MS.gene67222:CDS | 55.0% | |
| ! | GCAGGGACTGATGGTGTAGT+TGG | - | chr4.2:12497146-12497165 | MS.gene67222:CDS | 55.0% |
| ! | TTGCTTGAGGGAGATGGTGG+TGG | - | chr4.2:12496588-12496607 | MS.gene67222:CDS | 55.0% |
| GGAATGGTACTCCCCAGCAC+TGG | - | chr4.2:12497167-12497186 | MS.gene67222:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 12496552 | 12498290 | 12496552 | ID=MS.gene67222 |
| chr4.2 | mRNA | 12496552 | 12498290 | 12496552 | ID=MS.gene67222.t1;Parent=MS.gene67222 |
| chr4.2 | exon | 12498095 | 12498290 | 12498095 | ID=MS.gene67222.t1.exon1;Parent=MS.gene67222.t1 |
| chr4.2 | CDS | 12498095 | 12498290 | 12498095 | ID=cds.MS.gene67222.t1;Parent=MS.gene67222.t1 |
| chr4.2 | exon | 12496966 | 12497692 | 12496966 | ID=MS.gene67222.t1.exon2;Parent=MS.gene67222.t1 |
| chr4.2 | CDS | 12496966 | 12497692 | 12496966 | ID=cds.MS.gene67222.t1;Parent=MS.gene67222.t1 |
| chr4.2 | exon | 12496552 | 12496705 | 12496552 | ID=MS.gene67222.t1.exon3;Parent=MS.gene67222.t1 |
| chr4.2 | CDS | 12496552 | 12496705 | 12496552 | ID=cds.MS.gene67222.t1;Parent=MS.gene67222.t1 |
| Gene Sequence |
| Protein sequence |
