Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061004.t1 | XP_013466655.1 | 98.1 | 270 | 5 | 0 | 1 | 270 | 1 | 270 | 2.00E-148 | 535 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061004.t1 | Q42565 | 69.8 | 278 | 71 | 3 | 1 | 269 | 1 | 274 | 1.4e-107 | 390.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061004.t1 | B7FJB9 | 98.1 | 270 | 5 | 0 | 1 | 270 | 1 | 270 | 1.4e-148 | 535.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055174 | MS.gene061004 | 0.806686 | 7.29E-50 | -1.69E-46 |
| MS.gene057451 | MS.gene061004 | -0.80471 | 1.90E-49 | -1.69E-46 |
| MS.gene057452 | MS.gene061004 | -0.809546 | 1.79E-50 | -1.69E-46 |
| MS.gene061004 | MS.gene24227 | 0.800075 | 1.71E-48 | -1.69E-46 |
| MS.gene061004 | MS.gene56493 | 0.814598 | 1.42E-51 | -1.69E-46 |
| MS.gene061004 | MS.gene82350 | 0.824692 | 7.03E-54 | -1.69E-46 |
| MS.gene061004 | MS.gene82352 | 0.826163 | 3.15E-54 | -1.69E-46 |
| MS.gene061004 | MS.gene82624 | 0.800002 | 1.77E-48 | -1.69E-46 |
| MS.gene061004 | MS.gene82976 | 0.814748 | 1.32E-51 | -1.69E-46 |
| MS.gene061004 | MS.gene82978 | 0.830053 | 3.65E-55 | -1.69E-46 |
| MS.gene061004 | MS.gene82992 | 0.971916 | 6.38E-134 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene061004 | MS.gene057327 | PPI |
| MS.gene008073 | MS.gene061004 | PPI |
| MS.gene99044 | MS.gene061004 | PPI |
| MS.gene93130 | MS.gene061004 | PPI |
| MS.gene061004 | MS.gene82992 | PPI |
| MS.gene026451 | MS.gene061004 | PPI |
| MS.gene69241 | MS.gene061004 | PPI |
| MS.gene031993 | MS.gene061004 | PPI |
| MS.gene037363 | MS.gene061004 | PPI |
| MS.gene50265 | MS.gene061004 | PPI |
| MS.gene040899 | MS.gene061004 | PPI |
| MS.gene029210 | MS.gene061004 | PPI |
| MS.gene061004 | MS.gene040883 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061004.t1 | MTR_1g033480 | 98.148 | 270 | 5 | 0 | 1 | 270 | 1 | 270 | 0.0 | 547 |
| MS.gene061004.t1 | MTR_1g095360 | 35.747 | 221 | 107 | 10 | 71 | 263 | 83 | 296 | 6.02e-27 | 110 |
| MS.gene061004.t1 | MTR_1g095360 | 31.641 | 256 | 105 | 11 | 71 | 263 | 83 | 331 | 2.63e-22 | 96.7 |
| MS.gene061004.t1 | MTR_4g103830 | 27.225 | 191 | 126 | 5 | 81 | 270 | 243 | 421 | 3.82e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061004.t1 | AT1G25220 | 69.784 | 278 | 71 | 3 | 1 | 269 | 1 | 274 | 7.42e-141 | 397 |
| MS.gene061004.t1 | AT1G25220 | 66.667 | 291 | 71 | 4 | 1 | 269 | 1 | 287 | 5.38e-137 | 388 |
| MS.gene061004.t1 | AT1G25155 | 79.358 | 218 | 45 | 0 | 52 | 269 | 3 | 220 | 2.05e-135 | 381 |
| MS.gene061004.t1 | AT1G25083 | 79.358 | 218 | 45 | 0 | 52 | 269 | 3 | 220 | 2.05e-135 | 381 |
| MS.gene061004.t1 | AT1G24909 | 79.358 | 218 | 45 | 0 | 52 | 269 | 3 | 220 | 2.05e-135 | 381 |
| MS.gene061004.t1 | AT5G57890 | 68.613 | 274 | 78 | 3 | 1 | 269 | 1 | 271 | 2.07e-134 | 380 |
| MS.gene061004.t1 | AT1G24807 | 74.892 | 231 | 45 | 1 | 52 | 269 | 3 | 233 | 1.85e-131 | 372 |
| MS.gene061004.t1 | AT2G28880 | 31.349 | 252 | 102 | 10 | 71 | 258 | 88 | 332 | 7.35e-23 | 98.2 |
| MS.gene061004.t1 | AT3G27740 | 28.191 | 188 | 122 | 5 | 82 | 268 | 182 | 357 | 1.40e-13 | 70.1 |
| MS.gene061004.t1 | AT3G27740 | 28.191 | 188 | 122 | 5 | 82 | 268 | 254 | 429 | 2.54e-13 | 69.7 |
Find 0 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTCTTTCATTTAATTAA+TGG | - | 10364:17448-17467 | MS.gene061004:intron | 10.0% |
| !!! | AAAATTTTACATTGAATTAT+AGG | + | 10364:19080-19099 | None:intergenic | 10.0% |
| !!! | AAATTATTTGTGTTTTTTTA+CGG | - | 10364:17592-17611 | MS.gene061004:intron | 10.0% |
| !!! | TTATTTTCTTAAGTTATTAT+CGG | - | 10364:20008-20027 | MS.gene061004:intron | 10.0% |
| !!! | TTTAATTTCACATTAAATTT+AGG | + | 10364:18323-18342 | None:intergenic | 10.0% |
| !! | AAAAGAACATTATTGATAAA+AGG | + | 10364:17170-17189 | None:intergenic | 15.0% |
| !! | AAAGAACATTATTGATAAAA+GGG | + | 10364:17169-17188 | None:intergenic | 15.0% |
| !! | ATAAAAATTAAAACCTACTT+TGG | + | 10364:19363-19382 | None:intergenic | 15.0% |
| !! | TTCATTTAATTAATGGTTAA+TGG | - | 10364:17455-17474 | MS.gene061004:intron | 15.0% |
| !!! | AAAGTAGGTTTTAATTTTTA+TGG | - | 10364:19362-19381 | MS.gene061004:intron | 15.0% |
| !!! | ATGGTTTTAAATTACATTTA+TGG | - | 10364:19381-19400 | MS.gene061004:intron | 15.0% |
| !!! | GTTACAATTTTTTCTTTTTT+CGG | + | 10364:19050-19069 | None:intergenic | 15.0% |
| !! | ATTTATATTGAGGTAAAATG+CGG | - | 10364:19424-19443 | MS.gene061004:intron | 20.0% |
| !! | TAGTTATCAATAACAACAAT+TGG | + | 10364:17355-17374 | None:intergenic | 20.0% |
| !! | TATTAAACTAGTAGATTAAC+TGG | - | 10364:20054-20073 | MS.gene061004:intron | 20.0% |
| !! | TCTTAACATGCATTTATATT+AGG | - | 10364:19856-19875 | MS.gene061004:intron | 20.0% |
| !! | TGCAAAATTCAATGTATTTA+GGG | + | 10364:17896-17915 | None:intergenic | 20.0% |
| !! | TTAACTTCATTATTCATACA+CGG | - | 10364:20095-20114 | MS.gene061004:intron | 20.0% |
| !! | TTGCAAAATTCAATGTATTT+AGG | + | 10364:17897-17916 | None:intergenic | 20.0% |
| !!! | AATTCAAAGTCAATGTTTTA+GGG | + | 10364:17972-17991 | None:intergenic | 20.0% |
| !!! | AGAATATTTTATTGTACTTG+TGG | - | 10364:18445-18464 | MS.gene061004:intron | 20.0% |
| !!! | ATAATCGAAAATTTTGAAGA+AGG | + | 10364:18748-18767 | None:intergenic | 20.0% |
| !!! | ATCTGTTCTTTTTAGAAAAT+CGG | - | 10364:18471-18490 | MS.gene061004:intron | 20.0% |
| !!! | GAATATGAGTACATAATTTT+TGG | - | 10364:17531-17550 | MS.gene061004:intron | 20.0% |
| !!! | GAATTTTTATTGCAGATTTA+CGG | - | 10364:17224-17243 | MS.gene061004:intron | 20.0% |
| !!! | TAATTCAAAGTCAATGTTTT+AGG | + | 10364:17973-17992 | None:intergenic | 20.0% |
| !!! | TATTTTGACTATTTGAGTAA+AGG | + | 10364:20185-20204 | None:intergenic | 20.0% |
| !!! | TCTGTTTTATTATTTTCAAC+AGG | - | 10364:18675-18694 | MS.gene061004:CDS | 20.0% |
| !!! | TTATTGATGAAACTGTTTTT+GGG | - | 10364:18610-18629 | MS.gene061004:intron | 20.0% |
| !!! | TTGAATTAGAAAAAGTATTG+TGG | - | 10364:17699-17718 | MS.gene061004:intron | 20.0% |
| ! | AAAGTTTAGTATGTGAGAAA+AGG | + | 10364:20448-20467 | None:intergenic | 25.0% |
| ! | AACAATGTGAAAGATAAGAT+AGG | + | 10364:20336-20355 | None:intergenic | 25.0% |
| ! | AACGGTAAAAGTTAAAATGT+AGG | + | 10364:19164-19183 | None:intergenic | 25.0% |
| ! | AAGAAAAAATTGTAACGAAC+AGG | - | 10364:19054-19073 | MS.gene061004:CDS | 25.0% |
| ! | AAGTTTAGTATGTGAGAAAA+GGG | + | 10364:20447-20466 | None:intergenic | 25.0% |
| ! | AATAACAACAATTGGATCAT+TGG | + | 10364:17347-17366 | None:intergenic | 25.0% |
| ! | AGAAAGTTTCTTATTACATC+AGG | + | 10364:18658-18677 | None:intergenic | 25.0% |
| ! | ATAATAGTAATCGCATGTAA+CGG | + | 10364:19992-20011 | None:intergenic | 25.0% |
| ! | ATAGTCAAAATAGTTGAACT+TGG | - | 10364:20193-20212 | MS.gene061004:intron | 25.0% |
| ! | CAAAAACAGTTTCATCAATA+AGG | + | 10364:18611-18630 | None:intergenic | 25.0% |
| ! | GGTAAAATGCATTTATATTG+AGG | - | 10364:19414-19433 | MS.gene061004:intron | 25.0% |
| ! | TAATAAAGTCGAATACAACA+GGG | + | 10364:20278-20297 | None:intergenic | 25.0% |
| ! | TAGATTAACTGGTTAAGTTA+CGG | - | 10364:20065-20084 | MS.gene061004:intron | 25.0% |
| ! | TAGTTCATTAATCGTGTTTA+AGG | + | 10364:18804-18823 | None:intergenic | 25.0% |
| ! | TTTAAAGAGTTGGAATCTTA+GGG | - | 10364:20402-20421 | MS.gene061004:intron | 25.0% |
| !! | AAAAGGGTGTATGAATAAAA+GGG | + | 10364:17153-17172 | None:intergenic | 25.0% |
| !! | ATCTTAGCATTCAATGATTT+TGG | - | 10364:20379-20398 | MS.gene061004:CDS | 25.0% |
| !! | ATTTACGTTTGAAGTATATG+GGG | - | 10364:18512-18531 | MS.gene061004:intron | 25.0% |
| !! | CAGAAGCATATAAAAATGAA+CGG | + | 10364:19571-19590 | None:intergenic | 25.0% |
| !! | CATTTACGTTTGAAGTATAT+GGG | - | 10364:18511-18530 | MS.gene061004:intron | 25.0% |
| !! | CTTATTGATGAAACTGTTTT+TGG | - | 10364:18609-18628 | MS.gene061004:intron | 25.0% |
| !! | TAAAAGGGTGTATGAATAAA+AGG | + | 10364:17154-17173 | None:intergenic | 25.0% |
| !! | TCATTTACGTTTGAAGTATA+TGG | - | 10364:18510-18529 | MS.gene061004:intron | 25.0% |
| !!! | AATAAACTTGGTTCTTTTGA+AGG | + | 10364:18139-18158 | None:intergenic | 25.0% |
| !!! | ATAAACTTGGTTCTTTTGAA+GGG | + | 10364:18138-18157 | None:intergenic | 25.0% |
| !!! | ATGATTTTGGTTTAAAGAGT+TGG | - | 10364:20392-20411 | MS.gene061004:intron | 25.0% |
| !!! | ATTCAAAGTCAATGTTTTAG+GGG | + | 10364:17971-17990 | None:intergenic | 25.0% |
| AAAGAACCAAGTTTATTTGC+TGG | - | 10364:18142-18161 | MS.gene061004:intron | 30.0% | |
| AACAATTGGATCATTGGATT+TGG | + | 10364:17341-17360 | None:intergenic | 30.0% | |
| AAGTCTTGATCCTATTGTAA+TGG | + | 10364:19225-19244 | None:intergenic | 30.0% | |
| AATCAATTCTTTGTAATCCC+AGG | - | 10364:18988-19007 | MS.gene061004:intron | 30.0% | |
| ACAAACCTGACAAAGATTAT+AGG | + | 10364:17389-17408 | None:intergenic | 30.0% | |
| AGTTTAACACTGGATTAACA+TGG | - | 10364:18238-18257 | MS.gene061004:intron | 30.0% | |
| ATCAATTCTTTGTAATCCCA+GGG | - | 10364:18989-19008 | MS.gene061004:intron | 30.0% | |
| ATGTTGTCATTGAGATGAAA+CGG | + | 10364:19182-19201 | None:intergenic | 30.0% | |
| ATTACAATAGGATCAAGACT+TGG | - | 10364:19224-19243 | MS.gene061004:intron | 30.0% | |
| ATTGCACTTCTCTTTAAACA+AGG | + | 10364:18399-18418 | None:intergenic | 30.0% | |
| CATGTCATTCATCATTAACT+TGG | - | 10364:19113-19132 | MS.gene061004:intron | 30.0% | |
| CTGGTTTATTATGATGAGAA+AGG | - | 10364:19312-19331 | MS.gene061004:intron | 30.0% | |
| CTTGGTTCATTATTGATATG+CGG | - | 10364:20211-20230 | MS.gene061004:intron | 30.0% | |
| CTTTACCTATAATCTTTGTC+AGG | - | 10364:17381-17400 | MS.gene061004:intron | 30.0% | |
| GTAATAAAGTCGAATACAAC+AGG | + | 10364:20279-20298 | None:intergenic | 30.0% | |
| GTTTAAAGAGTTGGAATCTT+AGG | - | 10364:20401-20420 | MS.gene061004:intron | 30.0% | |
| TCTCAAAAATCCCTATATTG+TGG | - | 10364:19482-19501 | MS.gene061004:intron | 30.0% | |
| TGTGAAGCTTATAGAGAAAA+AGG | - | 10364:20550-20569 | MS.gene061004:CDS | 30.0% | |
| TTCATTTGTTTGCAACTACA+GGG | - | 10364:20467-20486 | MS.gene061004:intron | 30.0% | |
| TTCTTTCTGACAGTCAATAA+AGG | - | 10364:20150-20169 | MS.gene061004:intron | 30.0% | |
| TTTCATTTGTTTGCAACTAC+AGG | - | 10364:20466-20485 | MS.gene061004:intron | 30.0% | |
| ! | GAAGGGTAACATTTTCAAAT+GGG | + | 10364:18121-18140 | None:intergenic | 30.0% |
| ! | TGAAGGGTAACATTTTCAAA+TGG | + | 10364:18122-18141 | None:intergenic | 30.0% |
| ! | TTCTGAGCTCTGATATAATT+TGG | - | 10364:19586-19605 | MS.gene061004:intron | 30.0% |
| ! | TTTACGTTTGAAGTATATGG+GGG | - | 10364:18513-18532 | MS.gene061004:intron | 30.0% |
| !! | GGTTAAAGTGTTTTAAATCG+TGG | - | 10364:17720-17739 | MS.gene061004:intron | 30.0% |
| !! | TATGAATAAAAGGGTACTTG+AGG | + | 10364:17144-17163 | None:intergenic | 30.0% |
| !!! | AACTTGGCTTTCTTTTTCAA+TGG | - | 10364:19129-19148 | MS.gene061004:intron | 30.0% |
| AAAATTATTCGTGCTCCTTC+TGG | - | 10364:19267-19286 | MS.gene061004:intron | 35.0% | |
| AAAGATATGCCTGAATCTTG+AGG | + | 10364:18876-18895 | None:intergenic | 35.0% | |
| ACGTTATGATCGTTAACGTT+AGG | - | 10364:17751-17770 | MS.gene061004:intron | 35.0% | |
| ATGAACTTGAAGTAACAGCA+TGG | - | 10364:19694-19713 | MS.gene061004:intron | 35.0% | |
| CAAAAATCCTTGAATGTGTG+GGG | - | 10364:17825-17844 | MS.gene061004:intron | 35.0% | |
| CCAAAAATCCTTGAATGTGT+GGG | - | 10364:17824-17843 | MS.gene061004:intron | 35.0% | |
| CGTTATGATCGTTAACGTTA+GGG | - | 10364:17752-17771 | MS.gene061004:intron | 35.0% | |
| CTATAAGCTTCACAAAGTTG+CGG | + | 10364:20544-20563 | None:intergenic | 35.0% | |
| GCAAACAATGTTACATTAGG+AGG | + | 10364:18839-18858 | None:intergenic | 35.0% | |
| GGAGCAAACAATGTTACATT+AGG | + | 10364:18842-18861 | None:intergenic | 35.0% | |
| GTTATGATCGTTAACGTTAG+GGG | - | 10364:17753-17772 | MS.gene061004:intron | 35.0% | |
| TAACATGGCAACGGAAAATA+TGG | - | 10364:18253-18272 | MS.gene061004:intron | 35.0% | |
| TAACATTGTTTGCTCCTTAC+AGG | - | 10364:18846-18865 | MS.gene061004:intron | 35.0% | |
| TACATTTATGGTCGCAATTG+CGG | - | 10364:19393-19412 | MS.gene061004:intron | 35.0% | |
| TATCATTTGCAGTCCTTTCT+TGG | - | 10364:19623-19642 | MS.gene061004:intron | 35.0% | |
| TATGATGAGAAAGGAGAAGA+TGG | - | 10364:19321-19340 | MS.gene061004:intron | 35.0% | |
| TATTGCAGATTTACGGTTTG+AGG | - | 10364:17231-17250 | MS.gene061004:intron | 35.0% | |
| TCATGACAGATAAGTACAAC+AGG | + | 10364:19789-19808 | None:intergenic | 35.0% | |
| TTGGAAGTGAATTCAAAGCA+AGG | - | 10364:17298-17317 | MS.gene061004:intron | 35.0% | |
| TTGTGCTAAAAGCTTCTTCT+GGG | - | 10364:17272-17291 | MS.gene061004:intron | 35.0% | |
| TTTGATGCTCCTATGGTAAA+GGG | - | 10364:18207-18226 | MS.gene061004:intron | 35.0% | |
| ! | AGCTCTCCTTTTCAATTACA+AGG | + | 10364:19665-19684 | None:intergenic | 35.0% |
| ! | CCACACATTCAAGGATTTTT+GGG | + | 10364:17826-17845 | None:intergenic | 35.0% |
| ! | GAATTCAAAGCAAGGTGTTT+CGG | - | 10364:17306-17325 | MS.gene061004:intron | 35.0% |
| ! | GTATGAAATCAGCTTTAGCT+GGG | - | 10364:18168-18187 | MS.gene061004:intron | 35.0% |
| ! | GTTACTTCAAGTTCATCATC+AGG | + | 10364:19690-19709 | None:intergenic | 35.0% |
| ! | TATGAAATCAGCTTTAGCTG+GGG | - | 10364:18169-18188 | MS.gene061004:intron | 35.0% |
| ! | TCACAGCCTTGTAATTGAAA+AGG | - | 10364:19656-19675 | MS.gene061004:intron | 35.0% |
| ! | TTGCAAACAGTTTTCGAACT+TGG | - | 10364:18894-18913 | MS.gene061004:intron | 35.0% |
| ! | TTTTGATGCTCCTATGGTAA+AGG | - | 10364:18206-18225 | MS.gene061004:intron | 35.0% |
| !! | ATGCGATTTTGGTCTATTGT+AGG | - | 10364:19830-19849 | MS.gene061004:intron | 35.0% |
| !! | CACTTTTAGAAGTTTTCCCT+GGG | + | 10364:19008-19027 | None:intergenic | 35.0% |
| !! | TCACTTTTAGAAGTTTTCCC+TGG | + | 10364:19009-19028 | None:intergenic | 35.0% |
| !!! | GTGTTTTTTTACGGCGAAAT+TGG | - | 10364:17601-17620 | MS.gene061004:intron | 35.0% |
| !!! | TTTTTTACGGCGAAATTGGT+TGG | - | 10364:17605-17624 | MS.gene061004:intron | 35.0% |
| AAAGTCGAATACAACAGGGT+AGG | + | 10364:20274-20293 | None:intergenic | 40.0% | |
| ACACTGGATTAACATGGCAA+CGG | - | 10364:18244-18263 | MS.gene061004:intron | 40.0% | |
| ATACAACAGGGTAGGTATAC+TGG | + | 10364:20266-20285 | None:intergenic | 40.0% | |
| CAAGAAATATCGGCATATGC+AGG | - | 10364:19749-19768 | MS.gene061004:intron | 40.0% | |
| CCACAATGATATCGCAATTG+TGG | + | 10364:19459-19478 | None:intergenic | 40.0% | |
| CCACAATTGCGATATCATTG+TGG | - | 10364:19456-19475 | MS.gene061004:intron | 40.0% | |
| CCCAAAAATCCTTGAATGTG+TGG | - | 10364:17823-17842 | MS.gene061004:intron | 40.0% | |
| CTGCTCGTCACAAGAAATAT+CGG | - | 10364:19739-19758 | MS.gene061004:intron | 40.0% | |
| GAAAGTTGAGGAGATTGATG+AGG | + | 10364:17122-17141 | None:intergenic | 40.0% | |
| GACTGAAGATGGTCTCATAA+TGG | - | 10364:19716-19735 | MS.gene061004:intron | 40.0% | |
| GGAGATTCGAGAAATGAATG+TGG | + | 10364:17066-17085 | None:intergenic | 40.0% | |
| GTATACTGGTGTAGCTTCTA+TGG | + | 10364:20252-20271 | None:intergenic | 40.0% | |
| GTTGTGCTAAAAGCTTCTTC+TGG | - | 10364:17271-17290 | MS.gene061004:intron | 40.0% | |
| TAACTCTTCCCCTTTACCAT+AGG | + | 10364:18219-18238 | None:intergenic | 40.0% | |
| TGAAGAAGGCAATCTTTACC+TGG | + | 10364:18734-18753 | None:intergenic | 40.0% | |
| TGATATCTTCCAGCCAAGAA+AGG | + | 10364:19639-19658 | None:intergenic | 40.0% | |
| TGTGCTAAAAGCTTCTTCTG+GGG | - | 10364:17273-17292 | MS.gene061004:intron | 40.0% | |
| TTCAACAGGAAAAATCCGAG+AGG | - | 10364:18689-18708 | MS.gene061004:CDS | 40.0% | |
| TTGATGCTCCTATGGTAAAG+GGG | - | 10364:18208-18227 | MS.gene061004:intron | 40.0% | |
| ! | AACCAAGTTTATTTGCTGGC+GGG | - | 10364:18146-18165 | MS.gene061004:intron | 40.0% |
| ! | AATCTTGAGGTGTTCCTGTA+AGG | + | 10364:18863-18882 | None:intergenic | 40.0% |
| ! | AGATGGGTTTGGTTGAAGAA+GGG | + | 10364:17087-17106 | None:intergenic | 40.0% |
| ! | ATTTACGGTTTGAGGCCAAA+AGG | - | 10364:17239-17258 | MS.gene061004:intron | 40.0% |
| ! | CCCACACATTCAAGGATTTT+TGG | + | 10364:17827-17846 | None:intergenic | 40.0% |
| ! | CTACAACATCAAGGTTTTCG+AGG | + | 10364:18032-18051 | None:intergenic | 40.0% |
| ! | GAACCAAGTTTATTTGCTGG+CGG | - | 10364:18145-18164 | MS.gene061004:intron | 40.0% |
| ! | GAAGTGTCAGTGTTACATGA+AGG | + | 10364:19907-19926 | None:intergenic | 40.0% |
| ! | GGGAAGAGTTAGTTTAACAC+TGG | - | 10364:18228-18247 | MS.gene061004:intron | 40.0% |
| ! | GGTATGAAATCAGCTTTAGC+TGG | - | 10364:18167-18186 | MS.gene061004:intron | 40.0% |
| ! | TCATGATAGCGTCCAAGAAA+GGG | - | 10364:19803-19822 | MS.gene061004:intron | 40.0% |
| ! | TGGTTCTTTTATCTCGTGCA+GGG | - | 10364:19244-19263 | MS.gene061004:intron | 40.0% |
| ! | TTTACGGTTTGAGGCCAAAA+GGG | - | 10364:17240-17259 | MS.gene061004:intron | 40.0% |
| !! | TTGGTTCTTTTATCTCGTGC+AGG | - | 10364:19243-19262 | MS.gene061004:intron | 40.0% |
| ACAATCGCGGCCACAATATA+GGG | + | 10364:19495-19514 | None:intergenic | 45.0% | |
| ACAGGAACACCTCAAGATTC+AGG | - | 10364:18864-18883 | MS.gene061004:intron | 45.0% | |
| ACCCTGTCACGACACAATTA+CGG | + | 10364:17936-17955 | None:intergenic | 45.0% | |
| AGAGTTGGAATCTTAGGGTC+TGG | - | 10364:20407-20426 | MS.gene061004:intron | 45.0% | |
| ATGCATGGGATTACAGTGCA+TGG | - | 10364:18941-18960 | MS.gene061004:intron | 45.0% | |
| ATTTGCAGTCCTTTCTTGGC+TGG | - | 10364:19627-19646 | MS.gene061004:intron | 45.0% | |
| CACAAGTGGCTACAACATCA+AGG | + | 10364:18041-18060 | None:intergenic | 45.0% | |
| CACATTCGACAACTCACAAG+TGG | + | 10364:18055-18074 | None:intergenic | 45.0% | |
| CTACCGAAATGACGAGCTAA+CGG | - | 10364:18558-18577 | MS.gene061004:intron | 45.0% | |
| GACAACATCATTTCTTCCCC+TGG | - | 10364:19194-19213 | MS.gene061004:intron | 45.0% | |
| GAGGTGAAAGAGAGAGAGAT+GGG | + | 10364:17103-17122 | None:intergenic | 45.0% | |
| GATGCATGGGAAAAGTTCTC+TGG | - | 10364:19293-19312 | MS.gene061004:intron | 45.0% | |
| GCTGTGATTGTTGCGTAACA+TGG | - | 10364:17861-17880 | MS.gene061004:intron | 45.0% | |
| GGAGCTAGGATTTCACTTTG+AGG | - | 10364:18534-18553 | MS.gene061004:intron | 45.0% | |
| GTTACGCAACAATCACAGCA+GGG | + | 10364:17860-17879 | None:intergenic | 45.0% | |
| TAACGGTGGAGGAGTTGAAA+AGG | - | 10364:18575-18594 | MS.gene061004:intron | 45.0% | |
| TACCCGCCAGCAAATAAACT+TGG | + | 10364:18151-18170 | None:intergenic | 45.0% | |
| TGAGGTGAAAGAGAGAGAGA+TGG | + | 10364:17104-17123 | None:intergenic | 45.0% | |
| TGCATGGGATTACAGTGCAT+GGG | - | 10364:18942-18961 | MS.gene061004:intron | 45.0% | |
| TGTTACGCAACAATCACAGC+AGG | + | 10364:17861-17880 | None:intergenic | 45.0% | |
| TTGAAGTATATGGGGGAGCT+AGG | - | 10364:18520-18539 | MS.gene061004:intron | 45.0% | |
| TTGAGGCCAAAAGGGGAAAA+GGG | - | 10364:17248-17267 | MS.gene061004:intron | 45.0% | |
| ! | ACTTGCTGGACTACCAAAGT+AGG | - | 10364:19347-19366 | MS.gene061004:intron | 45.0% |
| ! | AGGGTACTTGAGGAAAGTTG+AGG | + | 10364:17134-17153 | None:intergenic | 45.0% |
| ! | GAAAGAGAGAGAGATGGGTT+TGG | + | 10364:17098-17117 | None:intergenic | 45.0% |
| ! | GAGATGGGTTTGGTTGAAGA+AGG | + | 10364:17088-17107 | None:intergenic | 45.0% |
| ! | GCTATTTCCCCACACATTCA+AGG | + | 10364:17835-17854 | None:intergenic | 45.0% |
| ! | GTAACAGCATGGACTGAAGA+TGG | - | 10364:19705-19724 | MS.gene061004:intron | 45.0% |
| ! | GTCATGATAGCGTCCAAGAA+AGG | - | 10364:19802-19821 | MS.gene061004:intron | 45.0% |
| ! | TTACGGTTTGAGGCCAAAAG+GGG | - | 10364:17241-17260 | MS.gene061004:intron | 45.0% |
| ! | TTTGAGGCCAAAAGGGGAAA+AGG | - | 10364:17247-17266 | MS.gene061004:intron | 45.0% |
| !! | AAAAGCTTCTTCTGGGGCAT+TGG | - | 10364:17279-17298 | MS.gene061004:intron | 45.0% |
| !! | CTTCGCTTTTGATGCTCCTA+TGG | - | 10364:18200-18219 | MS.gene061004:intron | 45.0% |
| !! | GGAGAAGATGGATTACTTGC+TGG | - | 10364:19333-19352 | MS.gene061004:intron | 45.0% |
| AAATGACGAGCTAACGGTGG+AGG | - | 10364:18564-18583 | MS.gene061004:intron | 50.0% | |
| AATCGCATCCGACCCTTTCT+TGG | + | 10364:19818-19837 | None:intergenic | 50.0% | |
| ACATCATTTCTTCCCCTGGC+TGG | - | 10364:19198-19217 | MS.gene061004:intron | 50.0% | |
| ACGCCAAACACAGGGATAGT+TGG | + | 10364:18921-18940 | None:intergenic | 50.0% | |
| CACAATCGCGGCCACAATAT+AGG | + | 10364:19496-19515 | None:intergenic | 50.0% | |
| CATCATTTCTTCCCCTGGCT+GGG | - | 10364:19199-19218 | MS.gene061004:intron | 50.0% | |
| CCACCGTTAGCTCGTCATTT+CGG | + | 10364:18564-18583 | None:intergenic | 50.0% | |
| CCATGCATACGCCAAACACA+GGG | + | 10364:18929-18948 | None:intergenic | 50.0% | |
| CCTGTGTTTGGCGTATGCAT+GGG | - | 10364:18927-18946 | MS.gene061004:CDS | 50.0% | |
| CTATATTGTGGCCGCGATTG+TGG | - | 10364:19494-19513 | MS.gene061004:intron | 50.0% | |
| CTATTGTAATGGCCCAGCCA+GGG | + | 10364:19214-19233 | None:intergenic | 50.0% | |
| CTCCTTCTGGTGTGATGCAT+GGG | - | 10364:19280-19299 | MS.gene061004:intron | 50.0% | |
| CTGTCACGACACAATTACGG+CGG | + | 10364:17933-17952 | None:intergenic | 50.0% | |
| GAGTTGTCGAATGTGCAGCA+AGG | - | 10364:18060-18079 | MS.gene061004:intron | 50.0% | |
| GATAGCGTCCAAGAAAGGGT+CGG | - | 10364:19807-19826 | MS.gene061004:intron | 50.0% | |
| GCAGCAAGGCGAAGGTTTAA+CGG | - | 10364:18074-18093 | MS.gene061004:intron | 50.0% | |
| GCCGTAATTGTGTCGTGACA+GGG | - | 10364:17932-17951 | MS.gene061004:CDS | 50.0% | |
| GGACCAACTATCCCTGTGTT+TGG | - | 10364:18915-18934 | MS.gene061004:CDS | 50.0% | |
| GGTGATATCAGCACTCCTCT+CGG | + | 10364:18707-18726 | None:intergenic | 50.0% | |
| TATTGTAATGGCCCAGCCAG+GGG | + | 10364:19213-19232 | None:intergenic | 50.0% | |
| TCAGGGGTAATGATGCTCTC+TGG | + | 10364:20506-20525 | None:intergenic | 50.0% | |
| TCGCATGTAACGGCGTCTAT+CGG | + | 10364:19982-20001 | None:intergenic | 50.0% | |
| TGAGGCCAAAAGGGGAAAAG+GGG | - | 10364:17249-17268 | MS.gene061004:intron | 50.0% | |
| TTCCCATGCATCACACCAGA+AGG | + | 10364:19285-19304 | None:intergenic | 50.0% | |
| ! | CACAACCCCTTTTCCCCTTT+TGG | + | 10364:17257-17276 | None:intergenic | 50.0% |
| ! | GAAAGGGTCGGATGCGATTT+TGG | - | 10364:19819-19838 | MS.gene061004:intron | 50.0% |
| !! | AGAGGAGTGCTGATATCACC+TGG | - | 10364:18707-18726 | MS.gene061004:CDS | 50.0% |
| !! | GAGAGCATCATTACCCCTGA+CGG | - | 10364:20506-20525 | MS.gene061004:CDS | 50.0% |
| !! | GAGGAGTGCTGATATCACCT+GGG | - | 10364:18708-18727 | MS.gene061004:CDS | 50.0% |
| AGGCAATCTTTACCTGGCCC+AGG | + | 10364:18728-18747 | None:intergenic | 55.0% | |
| CAGTGCATGGGAGAGGCTTT+CGG | - | 10364:18954-18973 | MS.gene061004:intron | 55.0% | |
| CCCATGCATACGCCAAACAC+AGG | + | 10364:18930-18949 | None:intergenic | 55.0% | |
| CCCTGTGTTTGGCGTATGCA+TGG | - | 10364:18926-18945 | MS.gene061004:CDS | 55.0% | |
| CCGAAATGACGAGCTAACGG+TGG | - | 10364:18561-18580 | MS.gene061004:intron | 55.0% | |
| CCTATTGTAATGGCCCAGCC+AGG | + | 10364:19215-19234 | None:intergenic | 55.0% | |
| CCTGGCTGGGCCATTACAAT+AGG | - | 10364:19212-19231 | MS.gene061004:intron | 55.0% | |
| CGCCGTAATTGTGTCGTGAC+AGG | - | 10364:17931-17950 | MS.gene061004:CDS | 55.0% | |
| GACAATCGTCTTGCCGTCAG+GGG | + | 10364:20522-20541 | None:intergenic | 55.0% | |
| GCAGTACGCAACCACAATCG+CGG | + | 10364:19508-19527 | None:intergenic | 55.0% | |
| GCTCCTTCTGGTGTGATGCA+TGG | - | 10364:19279-19298 | MS.gene061004:intron | 55.0% | |
| GGACAATCGTCTTGCCGTCA+GGG | + | 10364:20523-20542 | None:intergenic | 55.0% | |
| GGGATTACAGTGCATGGGAG+AGG | - | 10364:18947-18966 | MS.gene061004:intron | 55.0% | |
| TCGAATGTGCAGCAAGGCGA+AGG | - | 10364:18066-18085 | MS.gene061004:intron | 55.0% | |
| TGCAATGCCGCGTCATGACA+TGG | - | 10364:17997-18016 | MS.gene061004:intron | 55.0% | |
| CGGACAATCGTCTTGCCGTC+AGG | + | 10364:20524-20543 | None:intergenic | 60.0% | |
| TCCGCGACCATGTCATGACG+CGG | + | 10364:18007-18026 | None:intergenic | 60.0% | |
| TGCATGGGAGAGGCTTTCGG+CGG | - | 10364:18957-18976 | MS.gene061004:intron | 60.0% | |
| ! | GTGCTGATATCACCTGGGCC+AGG | - | 10364:18713-18732 | MS.gene061004:CDS | 60.0% |
| GCCGCGTCATGACATGGTCG+CGG | - | 10364:18003-18022 | MS.gene061004:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10364 | gene | 17056 | 20589 | 17056 | ID=MS.gene061004 |
| 10364 | mRNA | 17056 | 20589 | 17056 | ID=MS.gene061004.t1;Parent=MS.gene061004 |
| 10364 | exon | 20499 | 20589 | 20499 | ID=MS.gene061004.t1.exon1;Parent=MS.gene061004.t1 |
| 10364 | CDS | 20499 | 20589 | 20499 | ID=cds.MS.gene061004.t1;Parent=MS.gene061004.t1 |
| 10364 | exon | 20243 | 20406 | 20243 | ID=MS.gene061004.t1.exon2;Parent=MS.gene061004.t1 |
| 10364 | CDS | 20243 | 20406 | 20243 | ID=cds.MS.gene061004.t1;Parent=MS.gene061004.t1 |
| 10364 | exon | 19049 | 19119 | 19049 | ID=MS.gene061004.t1.exon3;Parent=MS.gene061004.t1 |
| 10364 | CDS | 19049 | 19119 | 19049 | ID=cds.MS.gene061004.t1;Parent=MS.gene061004.t1 |
| 10364 | exon | 18911 | 18948 | 18911 | ID=MS.gene061004.t1.exon4;Parent=MS.gene061004.t1 |
| 10364 | CDS | 18911 | 18948 | 18911 | ID=cds.MS.gene061004.t1;Parent=MS.gene061004.t1 |
| 10364 | exon | 18667 | 18777 | 18667 | ID=MS.gene061004.t1.exon5;Parent=MS.gene061004.t1 |
| 10364 | CDS | 18667 | 18777 | 18667 | ID=cds.MS.gene061004.t1;Parent=MS.gene061004.t1 |
| 10364 | exon | 18281 | 18380 | 18281 | ID=MS.gene061004.t1.exon6;Parent=MS.gene061004.t1 |
| 10364 | CDS | 18281 | 18380 | 18281 | ID=cds.MS.gene061004.t1;Parent=MS.gene061004.t1 |
| 10364 | exon | 17875 | 18010 | 17875 | ID=MS.gene061004.t1.exon7;Parent=MS.gene061004.t1 |
| 10364 | CDS | 17875 | 18010 | 17875 | ID=cds.MS.gene061004.t1;Parent=MS.gene061004.t1 |
| 10364 | exon | 17056 | 17157 | 17056 | ID=MS.gene061004.t1.exon8;Parent=MS.gene061004.t1 |
| 10364 | CDS | 17056 | 17157 | 17056 | ID=cds.MS.gene061004.t1;Parent=MS.gene061004.t1 |
| Gene Sequence |
| Protein sequence |
