AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062660.t1 MTR_6g065270 92.398 342 22 1 1 338 1 342 0.0 660
MS.gene062660.t1 MTR_6g065370 80.480 333 65 0 6 338 8 340 0.0 573
MS.gene062660.t1 MTR_6g065400 78.979 333 70 0 6 338 8 340 0.0 566
MS.gene062660.t1 MTR_6g065120 77.844 334 73 1 6 338 9 342 0.0 560
MS.gene062660.t1 MTR_6g065340 80.781 333 48 1 6 338 19 335 0.0 538
MS.gene062660.t1 MTR_6g065110 68.182 330 104 1 8 336 11 340 1.56e-177 495
MS.gene062660.t1 MTR_6g065430 57.057 333 134 2 3 333 4 329 3.02e-142 405
MS.gene062660.t1 MTR_1g082210 37.910 335 201 3 2 332 10 341 6.57e-75 234
MS.gene062660.t1 MTR_7g093950 37.059 340 205 4 1 332 9 347 1.33e-74 234
MS.gene062660.t1 MTR_1g089310 36.795 337 204 3 1 332 9 341 1.80e-72 228
MS.gene062660.t1 MTR_1g089310 36.795 337 204 3 1 332 25 357 2.90e-72 228
MS.gene062660.t1 MTR_6g464280 36.861 274 159 5 30 296 24 290 5.59e-51 172
MS.gene062660.t1 MTR_8g035540 32.803 314 190 6 29 331 13 316 1.07e-46 161
MS.gene062660.t1 MTR_6g464510 36.232 276 158 8 29 296 27 292 9.57e-46 159
MS.gene062660.t1 MTR_7g406880 32.907 313 181 9 44 333 45 351 1.01e-45 159
MS.gene062660.t1 MTR_8g035500 32.492 317 197 6 23 331 10 317 1.50e-45 158
MS.gene062660.t1 MTR_4g050140 31.210 314 194 5 29 333 17 317 3.38e-45 157
MS.gene062660.t1 MTR_0007s0520 39.171 217 117 4 44 254 37 244 5.15e-44 154
MS.gene062660.t1 MTR_6g464320 34.397 282 171 5 22 296 17 291 6.69e-44 154
MS.gene062660.t1 MTR_8g035520 33.445 299 177 6 47 334 40 327 1.21e-43 153
MS.gene062660.t1 MTR_1g102160 37.269 271 143 10 29 285 23 280 2.11e-42 150
MS.gene062660.t1 MTR_1g012430 32.258 310 190 8 29 333 15 309 1.62e-41 147
MS.gene062660.t1 MTR_1g111280 33.003 303 172 11 45 331 51 338 1.96e-40 145
MS.gene062660.t1 MTR_1g102170 33.333 234 130 5 30 254 43 259 5.76e-40 144
MS.gene062660.t1 MTR_3g012440 29.938 324 208 4 29 333 19 342 6.17e-40 144
MS.gene062660.t1 MTR_7g107040 31.633 294 180 5 53 336 39 321 7.57e-40 143
MS.gene062660.t1 MTR_3g101420 32.226 301 172 9 47 333 34 316 3.55e-38 138
MS.gene062660.t1 MTR_6g464120 34.914 232 130 6 30 254 29 246 3.84e-37 140
MS.gene062660.t1 MTR_4g086540 30.164 305 179 7 36 335 33 308 4.18e-36 133
MS.gene062660.t1 MTR_4g086510 30.847 295 184 7 47 332 35 318 1.80e-35 131
MS.gene062660.t1 MTR_4g086480 31.186 295 178 9 47 331 39 318 1.91e-34 129
MS.gene062660.t1 MTR_7g056207 30.743 296 183 8 47 332 67 350 2.07e-33 127
MS.gene062660.t1 MTR_4g086470 30.640 297 181 9 47 333 38 319 2.85e-30 117
MS.gene062660.t1 MTR_6g022710 30.182 275 146 5 89 322 156 425 1.18e-29 118
MS.gene062660.t1 MTR_1g105020 28.716 296 183 8 51 331 40 322 1.91e-29 115
MS.gene062660.t1 MTR_3g450680 28.179 291 181 7 51 326 48 325 5.29e-27 108
MS.gene062660.t1 MTR_5g005850 28.523 298 182 8 51 331 45 328 7.60e-26 105
MS.gene062660.t1 MTR_5g005900 28.049 328 193 10 29 333 21 328 1.05e-25 105
MS.gene062660.t1 MTR_5g005920 26.769 325 201 11 29 333 25 332 2.49e-25 104
MS.gene062660.t1 MTR_8g040860 27.302 315 192 12 29 326 28 322 2.61e-24 101
MS.gene062660.t1 MTR_7g051020 30.312 320 192 9 29 333 24 327 1.20e-23 99.8
MS.gene062660.t1 MTR_6g065470 33.529 170 81 3 6 157 7 162 2.90e-22 92.0
MS.gene062660.t1 MTR_1g104930 28.840 319 195 11 29 333 24 324 1.79e-18 85.1
MS.gene062660.t1 MTR_1g104933 27.931 290 179 8 57 333 46 318 7.79e-17 80.5
MS.gene062660.t1 MTR_6g065480 53.448 58 26 1 231 288 1 57 2.78e-15 69.7
MS.gene062660.t1 MTR_0007s0480 38.462 91 50 2 169 254 1 90 3.28e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062660.t1 AT5G23530 54.118 340 134 5 2 333 3 328 2.27e-139 398
MS.gene062660.t1 AT5G27320 37.910 335 202 2 1 332 9 340 3.05e-78 243
MS.gene062660.t1 AT3G63010 35.652 345 210 5 1 338 9 348 1.43e-70 224
MS.gene062660.t1 AT3G05120 35.312 337 210 2 1 332 9 342 2.41e-70 223
MS.gene062660.t1 AT5G62180 34.505 313 190 10 30 334 21 326 1.95e-51 173
MS.gene062660.t1 AT5G16080 33.003 303 173 9 46 332 54 342 1.86e-45 158
MS.gene062660.t1 AT2G45600 32.542 295 175 6 56 337 38 321 3.59e-45 157
MS.gene062660.t1 AT5G06570 35.673 342 185 9 9 335 23 344 1.43e-44 156
MS.gene062660.t1 AT5G06570 35.673 342 185 9 9 335 23 344 1.43e-44 156
MS.gene062660.t1 AT5G06570 35.673 342 185 9 9 335 8 329 1.48e-44 155
MS.gene062660.t1 AT5G06570 35.673 342 185 9 9 335 8 329 1.48e-44 155
MS.gene062660.t1 AT2G45610 33.571 280 169 5 30 300 22 293 9.15e-43 150
MS.gene062660.t1 AT1G68620 30.662 287 178 7 54 332 57 330 9.04e-42 148
MS.gene062660.t1 AT1G47480 31.307 329 200 10 11 334 5 312 1.01e-41 147
MS.gene062660.t1 AT1G19190 31.546 317 185 14 30 333 18 315 2.38e-32 123
MS.gene062660.t1 AT3G48700 30.097 309 179 12 47 332 32 326 6.41e-32 122
MS.gene062660.t1 AT2G03550 31.987 297 176 9 47 333 32 312 1.66e-30 118
MS.gene062660.t1 AT3G27320 27.895 380 181 9 23 322 37 403 1.88e-30 120
MS.gene062660.t1 AT3G48690 29.900 301 185 9 47 332 32 321 3.42e-30 117
MS.gene062660.t1 AT5G14310 31.752 274 140 6 93 322 151 421 3.67e-30 119
MS.gene062660.t1 AT3G27320 30.225 311 165 8 54 322 135 435 1.69e-29 118
MS.gene062660.t1 AT1G49640 31.760 233 146 8 50 279 36 258 5.26e-27 108
MS.gene062660.t1 AT1G49660 28.990 307 194 10 35 331 22 314 2.46e-26 107
MS.gene062660.t1 AT1G49650 30.888 259 156 9 51 299 92 337 6.87e-22 95.5

Find 103 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAGGAAGGGAGGCTGTTT+TGG 0.273074 6.4:-46066652 None:intergenic
TGCGGAGGATTTGTCGGGTT+TGG 0.280062 6.4:+46067166 MS.gene062660:CDS
CTCTTTACTCCCACTGTTGC+CGG 0.296074 6.4:+46066603 MS.gene062660:CDS
AGCACATCACCTTGCAGTTC+GGG 0.298353 6.4:+46066938 MS.gene062660:CDS
GGCGTTAACGGTAATGTCTT+TGG 0.307568 6.4:-46066559 None:intergenic
GCAGTTCGGGTTTGTAAAGC+TGG 0.329901 6.4:+46066951 MS.gene062660:CDS
AATAATCAATCATTTAGAAT+TGG 0.363723 6.4:-46067393 None:intergenic
GGCAAAAGAGGTATTATGAT+TGG 0.376841 6.4:+46067240 MS.gene062660:CDS
GTGGTGGAAGGTGTTCTTAC+CGG 0.381206 6.4:+46067097 MS.gene062660:CDS
CTCCGGGAAATCCGGATTAT+CGG 0.399962 6.4:+46066975 MS.gene062660:CDS
GGGTTTGTAAAGCTGGGCTC+CGG 0.403578 6.4:+46066958 MS.gene062660:CDS
TTCCTTGCCGGAGACAGTTC+CGG 0.404209 6.4:+46066906 MS.gene062660:CDS
ATCATTTACTTCCACGGCGG+CGG 0.407976 6.4:+46066675 MS.gene062660:CDS
GATTTGATCCTTTGAATGAT+TGG 0.409071 6.4:+46067219 MS.gene062660:CDS
GCCGAATGCGGAGGATTTGT+CGG 0.409294 6.4:+46067160 MS.gene062660:CDS
ACTCAACACCTCTTCTTCCT+TGG 0.411552 6.4:+46066397 MS.gene062660:CDS
TAGCACATCACCTTGCAGTT+CGG 0.416358 6.4:+46066937 MS.gene062660:CDS
ACCCGATAATCCGGATTTCC+CGG 0.425872 6.4:-46066977 None:intergenic
TTTGGTGGAAACGCCGTTAA+CGG 0.430126 6.4:-46066541 None:intergenic
TCCGGGAAATCCGGATTATC+GGG 0.432121 6.4:+46066976 MS.gene062660:CDS
AAGCTGGGCTCCGGGAAATC+CGG 0.437572 6.4:+46066967 MS.gene062660:CDS
CCGAATGCGGAGGATTTGTC+GGG 0.438724 6.4:+46067161 MS.gene062660:CDS
TAAAAGTGAAAGAAGTGAAA+TGG 0.440270 6.4:-46066433 None:intergenic
CCCGACAAATCCTCCGCATT+CGG 0.445071 6.4:-46067161 None:intergenic
CCTAACGCCACTCCCGTTAA+CGG 0.446230 6.4:+46066528 MS.gene062660:CDS
TGAGTAGATTCAGGCAGATC+AGG 0.446887 6.4:-46067332 None:intergenic
TGGATACCAACCCGATAATC+CGG 0.449037 6.4:-46066986 None:intergenic
GTGTCAAAATGTTTCCTTGC+CGG 0.452264 6.4:+46066894 MS.gene062660:CDS
CATTCACCGCGTCATGATCT+CGG 0.452710 6.4:-46067130 None:intergenic
TTGGTGGAAACGCCGTTAAC+GGG 0.454826 6.4:-46066540 None:intergenic
CGCCGTTGGTGTCGATGGTA+AGG 0.455201 6.4:+46067066 MS.gene062660:CDS
GATATCGATGCTCCGGTGTA+AGG 0.456817 6.4:-46066794 None:intergenic
TATGATTGGTTAAAGAAATG+TGG 0.458980 6.4:+46067254 MS.gene062660:CDS
CTTTATGCCGTAGACTCTGC+AGG 0.467753 6.4:+46066736 MS.gene062660:CDS
TTAACGCCGAAAATAACGTT+TGG 0.477196 6.4:+46066574 MS.gene062660:CDS
ATTTGCACCGGAACTGTCTC+CGG 0.477878 6.4:-46066913 None:intergenic
GATGCGGAGATTAAACTTGA+TGG 0.483734 6.4:+46067041 MS.gene062660:CDS
CCGTTAACGGGAGTGGCGTT+AGG 0.486028 6.4:-46066528 None:intergenic
CTTTGAATGATTGGCAAAAG+AGG 0.487397 6.4:+46067228 MS.gene062660:CDS
CCTGTCATCATTTACTTCCA+CGG 0.488327 6.4:+46066669 MS.gene062660:CDS
ATGATTGGTTAAAGAAATGT+GGG 0.488530 6.4:+46067255 MS.gene062660:CDS
TCATTTACTTCCACGGCGGC+GGG 0.488815 6.4:+46066676 MS.gene062660:CDS
AAGAAGTGAAATGGTAGCTC+TGG 0.489575 6.4:-46066424 None:intergenic
GTTAATGAGACGGCGATTGA+CGG 0.502882 6.4:-46066484 None:intergenic
CAGTTCGGGTTTGTAAAGCT+GGG 0.506658 6.4:+46066952 MS.gene062660:CDS
GGAAACGCCGTTAACGGGAG+TGG 0.511016 6.4:-46066535 None:intergenic
GGTTTGTAAAGCTGGGCTCC+GGG 0.520514 6.4:+46066959 MS.gene062660:CDS
CGATGGTAAGGACGGATTGG+TGG 0.521258 6.4:+46067078 MS.gene062660:CDS
AAATTTCCCTGCAGAGTCTA+CGG 0.521782 6.4:-46066743 None:intergenic
ATAATCATCTGAGTAGATTC+AGG 0.526163 6.4:-46067341 None:intergenic
TGGTAAGGACGGATTGGTGG+TGG 0.530541 6.4:+46067081 MS.gene062660:CDS
TGATCTCGGTTTGATCCCTC+CGG 0.539668 6.4:-46067116 None:intergenic
TGGATCGCCGTTGGTGTCGA+TGG 0.540273 6.4:+46067061 MS.gene062660:CDS
TAAAGCATCGTGGTAGATTG+AGG 0.544373 6.4:-46066718 None:intergenic
ATCGTGGTAGATTGAGGAAG+GGG 0.546376 6.4:-46066712 None:intergenic
AAGGACGGATTGGTGGTGGA+AGG 0.550023 6.4:+46067085 MS.gene062660:CDS
GCCGGAGAAGTCATCGGAGA+TGG 0.551507 6.4:+46066621 MS.gene062660:CDS
ACCATCTCCGATGACTTCTC+CGG 0.551868 6.4:-46066622 None:intergenic
TGCGACGGATATCGATGCTC+CGG 0.555954 6.4:-46066801 None:intergenic
CCGTGGAAGTAAATGATGAC+AGG 0.560772 6.4:-46066669 None:intergenic
CTGGCTTTCCAAGGAAGAAG+AGG 0.565695 6.4:-46066405 None:intergenic
GCATCGTGGTAGATTGAGGA+AGG 0.566906 6.4:-46066714 None:intergenic
GGCGCTTCTTCTCGCTCTAA+CGG 0.569447 6.4:+46066459 MS.gene062660:CDS
TATCCGTCGCAATATGATGA+TGG 0.571005 6.4:+46066813 MS.gene062660:CDS
TGTCGATGGTAAGGACGGAT+TGG 0.572977 6.4:+46067075 MS.gene062660:CDS
TAAACTTGATGGATCGCCGT+TGG 0.573185 6.4:+46067052 MS.gene062660:CDS
GGAAATCCGGATTATCGGGT+TGG 0.574486 6.4:+46066980 MS.gene062660:CDS
GATGACTTCTCCGGCAACAG+TGG 0.577971 6.4:-46066613 None:intergenic
ATGACGCGGTGAATGTAAGC+GGG 0.586945 6.4:+46067138 MS.gene062660:CDS
ATGGTAGCTCTGGCTTTCCA+AGG 0.587238 6.4:-46066414 None:intergenic
ATCAAGTTTAATCTCCGCAT+CGG 0.589980 6.4:-46067039 None:intergenic
GGAAGTAAATGATGACAGGA+AGG 0.590018 6.4:-46066665 None:intergenic
GTTAACGGTAATGTCTTTGG+TGG 0.590282 6.4:-46066556 None:intergenic
CACCGGAACTGTCTCCGGCA+AGG 0.591057 6.4:-46066908 None:intergenic
GACTGAAGAAGTTAATGAGA+CGG 0.593190 6.4:-46066494 None:intergenic
GTGGAAGGTGTTCTTACCGG+AGG 0.596371 6.4:+46067100 MS.gene062660:CDS
ATGACTTCTCCGGCAACAGT+GGG 0.596379 6.4:-46066612 None:intergenic
TCAGATGATTATGCAAGTCA+AGG 0.601932 6.4:+46067352 MS.gene062660:CDS
ATCGATGCTCCGGTGTAAGG+CGG 0.602490 6.4:-46066791 None:intergenic
ACTGTTGCCGGAGAAGTCAT+CGG 0.603429 6.4:+46066615 MS.gene062660:CDS
AACGGGAGTGGCGTTAGGTG+AGG 0.608356 6.4:-46066523 None:intergenic
TGTAAGCGGGCCGAATGCGG+AGG 0.609279 6.4:+46067151 MS.gene062660:CDS
GAAAACTGAACCCGCCGCCG+TGG 0.611082 6.4:-46066686 None:intergenic
GTGATGTGCTAAATTTGCAC+CGG 0.617230 6.4:-46066925 None:intergenic
GAATGTAAGCGGGCCGAATG+CGG 0.618920 6.4:+46067148 MS.gene062660:CDS
GTCCTTACCATCGACACCAA+CGG 0.621799 6.4:-46067068 None:intergenic
TGGAAGGTGTTCTTACCGGA+GGG 0.627234 6.4:+46067101 MS.gene062660:CDS
GGAGAAGTCATCGGAGATGG+TGG 0.629162 6.4:+46066624 MS.gene062660:CDS
GTTGGTGTCGATGGTAAGGA+CGG 0.629245 6.4:+46067070 MS.gene062660:CDS
GTAAATGATGACAGGAAGGG+AGG 0.632046 6.4:-46066661 None:intergenic
TGTCAACTACCGCCTTACAC+CGG 0.636801 6.4:+46066782 MS.gene062660:CDS
CATCGTGGTAGATTGAGGAA+GGG 0.643584 6.4:-46066713 None:intergenic
CTTTACAAACCCGAACTGCA+AGG 0.652824 6.4:-46066947 None:intergenic
GAAGTAAATGATGACAGGAA+GGG 0.653090 6.4:-46066664 None:intergenic
TCTCCATCATCATATTGCGA+CGG 0.653123 6.4:-46066816 None:intergenic
TTTATGCCGTAGACTCTGCA+GGG 0.653194 6.4:+46066737 MS.gene062660:CDS
CGGCGAGGAACGGACCGATG+CGG 0.653580 6.4:+46067025 MS.gene062660:CDS
GTCGCAATATGATGATGGAG+AGG 0.653832 6.4:+46066818 MS.gene062660:CDS
CATGACGCGGTGAATGTAAG+CGG 0.656915 6.4:+46067137 MS.gene062660:CDS
GTTGATTGAATATCCAAACA+TGG 0.659983 6.4:+46067289 MS.gene062660:CDS
GTCATCATTTACTTCCACGG+CGG 0.732442 6.4:+46066672 MS.gene062660:CDS
GTCTACGGCATAAAGCATCG+TGG 0.766027 6.4:-46066728 None:intergenic
ATCAAACCGAGATCATGACG+CGG 0.774799 6.4:+46067124 MS.gene062660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TAAAAAACATGAACCATGTT+TGG - chr6.4:46067305-46067324 None:intergenic 25.0%
! TAAAAGTGAAAGAAGTGAAA+TGG - chr6.4:46066436-46066455 None:intergenic 25.0%
!! ATGATTGGTTAAAGAAATGT+GGG + chr6.4:46067255-46067274 MS.gene062660:CDS 25.0%
!! TATGATTGGTTAAAGAAATG+TGG + chr6.4:46067254-46067273 MS.gene062660:CDS 25.0%
!!! ATTTTTGGAAGAGAATAGAA+AGG + chr6.4:46066851-46066870 MS.gene062660:CDS 25.0%
!!! TCACTTCTTTCACTTTTATT+CGG + chr6.4:46066438-46066457 MS.gene062660:CDS 25.0%
ATAATCATCTGAGTAGATTC+AGG - chr6.4:46067344-46067363 None:intergenic 30.0%
GATTTGATCCTTTGAATGAT+TGG + chr6.4:46067219-46067238 MS.gene062660:CDS 30.0%
GTTGATTGAATATCCAAACA+TGG + chr6.4:46067289-46067308 MS.gene062660:CDS 30.0%
! AGAGAATAGAAAGGTTTTAC+CGG + chr6.4:46066860-46066879 MS.gene062660:CDS 30.0%
!! ACGAAACCAAACGTTATTTT+CGG - chr6.4:46066583-46066602 None:intergenic 30.0%
ATCAAGTTTAATCTCCGCAT+CGG - chr6.4:46067042-46067061 None:intergenic 35.0%
CCAATAAAAACAAGCGTATC+CGG - chr6.4:46067197-46067216 None:intergenic 35.0%
CTTTGAATGATTGGCAAAAG+AGG + chr6.4:46067228-46067247 MS.gene062660:CDS 35.0%
GAAGTAAATGATGACAGGAA+GGG - chr6.4:46066667-46066686 None:intergenic 35.0%
GACTGAAGAAGTTAATGAGA+CGG - chr6.4:46066497-46066516 None:intergenic 35.0%
TCAGATGATTATGCAAGTCA+AGG + chr6.4:46067352-46067371 MS.gene062660:CDS 35.0%
TTAACGCCGAAAATAACGTT+TGG + chr6.4:46066574-46066593 MS.gene062660:CDS 35.0%
! CTCTTTTGCCAATCATTCAA+AGG - chr6.4:46067230-46067249 None:intergenic 35.0%
! TTTGACACATCAGCATTTTC+CGG - chr6.4:46066882-46066901 None:intergenic 35.0%
!! AACGTTATTTTCGGCGTTAA+CGG - chr6.4:46066574-46066593 None:intergenic 35.0%
!! GGCAAAAGAGGTATTATGAT+TGG + chr6.4:46067240-46067259 MS.gene062660:CDS 35.0%
!!! GATACGCTTGTTTTTATTGG+TGG + chr6.4:46067197-46067216 MS.gene062660:CDS 35.0%
AAATTTCCCTGCAGAGTCTA+CGG - chr6.4:46066746-46066765 None:intergenic 40.0%
AAGAAGTGAAATGGTAGCTC+TGG - chr6.4:46066427-46066446 None:intergenic 40.0%
CCTGTCATCATTTACTTCCA+CGG + chr6.4:46066669-46066688 MS.gene062660:CDS 40.0%
GATGCGGAGATTAAACTTGA+TGG + chr6.4:46067041-46067060 MS.gene062660:CDS 40.0%
GGAAGTAAATGATGACAGGA+AGG - chr6.4:46066668-46066687 None:intergenic 40.0%
GTGATGTGCTAAATTTGCAC+CGG - chr6.4:46066928-46066947 None:intergenic 40.0%
GTGTCAAAATGTTTCCTTGC+CGG + chr6.4:46066894-46066913 MS.gene062660:CDS 40.0%
GTTAACGGTAATGTCTTTGG+TGG - chr6.4:46066559-46066578 None:intergenic 40.0%
TATCCGTCGCAATATGATGA+TGG + chr6.4:46066813-46066832 MS.gene062660:CDS 40.0%
TCTCCATCATCATATTGCGA+CGG - chr6.4:46066819-46066838 None:intergenic 40.0%
! AGAGGCTGTGCTGAAATTTT+TGG + chr6.4:46066836-46066855 MS.gene062660:CDS 40.0%
! TTTGTCGGGTTTGGATTTTC+CGG + chr6.4:46067175-46067194 MS.gene062660:CDS 40.0%
!! TAAAGCATCGTGGTAGATTG+AGG - chr6.4:46066721-46066740 None:intergenic 40.0%
!!! CCGGATACGCTTGTTTTTAT+TGG + chr6.4:46067194-46067213 MS.gene062660:CDS 40.0%
!!! GTATCCATTCAGCCGTTTTT+TGG + chr6.4:46067002-46067021 MS.gene062660:CDS 40.0%
ACTCAACACCTCTTCTTCCT+TGG + chr6.4:46066397-46066416 MS.gene062660:CDS 45.0%
ATCAAACCGAGATCATGACG+CGG + chr6.4:46067124-46067143 MS.gene062660:CDS 45.0%
ATCGTGGTAGATTGAGGAAG+GGG - chr6.4:46066715-46066734 None:intergenic 45.0%
CATCGTGGTAGATTGAGGAA+GGG - chr6.4:46066716-46066735 None:intergenic 45.0%
CCGTGGAAGTAAATGATGAC+AGG - chr6.4:46066672-46066691 None:intergenic 45.0%
CTTTACAAACCCGAACTGCA+AGG - chr6.4:46066950-46066969 None:intergenic 45.0%
GGCGTTAACGGTAATGTCTT+TGG - chr6.4:46066562-46066581 None:intergenic 45.0%
GTAAATGATGACAGGAAGGG+AGG - chr6.4:46066664-46066683 None:intergenic 45.0%
GTCATCATTTACTTCCACGG+CGG + chr6.4:46066672-46066691 MS.gene062660:CDS 45.0%
GTTAATGAGACGGCGATTGA+CGG - chr6.4:46066487-46066506 None:intergenic 45.0%
TAGCACATCACCTTGCAGTT+CGG + chr6.4:46066937-46066956 MS.gene062660:CDS 45.0%
TGAGTAGATTCAGGCAGATC+AGG - chr6.4:46067335-46067354 None:intergenic 45.0%
TGGATACCAACCCGATAATC+CGG - chr6.4:46066989-46067008 None:intergenic 45.0%
TTTATGCCGTAGACTCTGCA+GGG + chr6.4:46066737-46066756 MS.gene062660:CDS 45.0%
TTTGGTGGAAACGCCGTTAA+CGG - chr6.4:46066544-46066563 None:intergenic 45.0%
! CAGTTCGGGTTTGTAAAGCT+GGG + chr6.4:46066952-46066971 MS.gene062660:CDS 45.0%
! TAAACTTGATGGATCGCCGT+TGG + chr6.4:46067052-46067071 MS.gene062660:CDS 45.0%
!! GTCGCAATATGATGATGGAG+AGG + chr6.4:46066818-46066837 MS.gene062660:CDS 45.0%
!!! TCCATTCAGCCGTTTTTTGG+CGG + chr6.4:46067005-46067024 MS.gene062660:CDS 45.0%
ACCATCTCCGATGACTTCTC+CGG - chr6.4:46066625-46066644 None:intergenic 50.0%
ACCCGATAATCCGGATTTCC+CGG - chr6.4:46066980-46066999 None:intergenic 50.0%
ACTGTTGCCGGAGAAGTCAT+CGG + chr6.4:46066615-46066634 MS.gene062660:CDS 50.0%
AGCACATCACCTTGCAGTTC+GGG + chr6.4:46066938-46066957 MS.gene062660:CDS 50.0%
ATCATTTACTTCCACGGCGG+CGG + chr6.4:46066675-46066694 MS.gene062660:CDS 50.0%
ATGACGCGGTGAATGTAAGC+GGG + chr6.4:46067138-46067157 MS.gene062660:CDS 50.0%
ATGACTTCTCCGGCAACAGT+GGG - chr6.4:46066615-46066634 None:intergenic 50.0%
ATTTGCACCGGAACTGTCTC+CGG - chr6.4:46066916-46066935 None:intergenic 50.0%
CATGACGCGGTGAATGTAAG+CGG + chr6.4:46067137-46067156 MS.gene062660:CDS 50.0%
CATTCACCGCGTCATGATCT+CGG - chr6.4:46067133-46067152 None:intergenic 50.0%
CTCCGGGAAATCCGGATTAT+CGG + chr6.4:46066975-46066994 MS.gene062660:CDS 50.0%
CTCTTTACTCCCACTGTTGC+CGG + chr6.4:46066603-46066622 MS.gene062660:CDS 50.0%
CTTTATGCCGTAGACTCTGC+AGG + chr6.4:46066736-46066755 MS.gene062660:CDS 50.0%
GATATCGATGCTCCGGTGTA+AGG - chr6.4:46066797-46066816 None:intergenic 50.0%
GCATCGTGGTAGATTGAGGA+AGG - chr6.4:46066717-46066736 None:intergenic 50.0%
GGAAATCCGGATTATCGGGT+TGG + chr6.4:46066980-46066999 MS.gene062660:CDS 50.0%
GTCCTTACCATCGACACCAA+CGG - chr6.4:46067071-46067090 None:intergenic 50.0%
TCCGGGAAATCCGGATTATC+GGG + chr6.4:46066976-46066995 MS.gene062660:CDS 50.0%
TGTCAACTACCGCCTTACAC+CGG + chr6.4:46066782-46066801 MS.gene062660:CDS 50.0%
TGTCGATGGTAAGGACGGAT+TGG + chr6.4:46067075-46067094 MS.gene062660:CDS 50.0%
TTGGTGGAAACGCCGTTAAC+GGG - chr6.4:46066543-46066562 None:intergenic 50.0%
! CTGGCTTTCCAAGGAAGAAG+AGG - chr6.4:46066408-46066427 None:intergenic 50.0%
! GCAGTTCGGGTTTGTAAAGC+TGG + chr6.4:46066951-46066970 MS.gene062660:CDS 50.0%
! TGATCTCGGTTTGATCCCTC+CGG - chr6.4:46067119-46067138 None:intergenic 50.0%
!! ATGGTAGCTCTGGCTTTCCA+AGG - chr6.4:46066417-46066436 None:intergenic 50.0%
!! GTCTACGGCATAAAGCATCG+TGG - chr6.4:46066731-46066750 None:intergenic 50.0%
!! GTGGTGGAAGGTGTTCTTAC+CGG + chr6.4:46067097-46067116 MS.gene062660:CDS 50.0%
!! GTTGGTGTCGATGGTAAGGA+CGG + chr6.4:46067070-46067089 MS.gene062660:CDS 50.0%
!! TGGAAGGTGTTCTTACCGGA+GGG + chr6.4:46067101-46067120 MS.gene062660:CDS 50.0%
ATCGATGCTCCGGTGTAAGG+CGG - chr6.4:46066794-46066813 None:intergenic 55.0%
CCCGACAAATCCTCCGCATT+CGG - chr6.4:46067164-46067183 None:intergenic 55.0%
CCGAATGCGGAGGATTTGTC+GGG + chr6.4:46067161-46067180 MS.gene062660:CDS 55.0%
CCTAACGCCACTCCCGTTAA+CGG + chr6.4:46066528-46066547 MS.gene062660:CDS 55.0%
CGTTCCTCGCCGCCAAAAAA+CGG - chr6.4:46067017-46067036 None:intergenic 55.0%
GAATGTAAGCGGGCCGAATG+CGG + chr6.4:46067148-46067167 MS.gene062660:CDS 55.0%
GATGACTTCTCCGGCAACAG+TGG - chr6.4:46066616-46066635 None:intergenic 55.0%
GCCGAATGCGGAGGATTTGT+CGG + chr6.4:46067160-46067179 MS.gene062660:CDS 55.0%
GCCGCCAAAAAACGGCTGAA+TGG - chr6.4:46067009-46067028 None:intergenic 55.0%
GGAGAAGTCATCGGAGATGG+TGG + chr6.4:46066624-46066643 MS.gene062660:CDS 55.0%
GGCGCTTCTTCTCGCTCTAA+CGG + chr6.4:46066459-46066478 MS.gene062660:CDS 55.0%
GGGTTTGTAAAGCTGGGCTC+CGG + chr6.4:46066958-46066977 MS.gene062660:CDS 55.0%
GGTTTGTAAAGCTGGGCTCC+GGG + chr6.4:46066959-46066978 MS.gene062660:CDS 55.0%
TCATTTACTTCCACGGCGGC+GGG + chr6.4:46066676-46066695 MS.gene062660:CDS 55.0%
TGCGACGGATATCGATGCTC+CGG - chr6.4:46066804-46066823 None:intergenic 55.0%
TGCGGAGGATTTGTCGGGTT+TGG + chr6.4:46067166-46067185 MS.gene062660:CDS 55.0%
TTCCTTGCCGGAGACAGTTC+CGG + chr6.4:46066906-46066925 MS.gene062660:CDS 55.0%
! GACAGGAAGGGAGGCTGTTT+TGG - chr6.4:46066655-46066674 None:intergenic 55.0%
!! AAGGACGGATTGGTGGTGGA+AGG + chr6.4:46067085-46067104 MS.gene062660:CDS 55.0%
!! AGGAAGGGAGGCTGTTTTGG+TGG - chr6.4:46066652-46066671 None:intergenic 55.0%
!! CGATGGTAAGGACGGATTGG+TGG + chr6.4:46067078-46067097 MS.gene062660:CDS 55.0%
!! GTGGAAGGTGTTCTTACCGG+AGG + chr6.4:46067100-46067119 MS.gene062660:CDS 55.0%
!! TGGTAAGGACGGATTGGTGG+TGG + chr6.4:46067081-46067100 MS.gene062660:CDS 55.0%
!!! CGTTTTTTGGCGGCGAGGAA+CGG + chr6.4:46067015-46067034 MS.gene062660:CDS 55.0%
AACGGGAGTGGCGTTAGGTG+AGG - chr6.4:46066526-46066545 None:intergenic 60.0%
AAGCTGGGCTCCGGGAAATC+CGG + chr6.4:46066967-46066986 MS.gene062660:CDS 60.0%
CCGTTAACGGGAGTGGCGTT+AGG - chr6.4:46066531-46066550 None:intergenic 60.0%
GCCGGAGAAGTCATCGGAGA+TGG + chr6.4:46066621-46066640 MS.gene062660:CDS 60.0%
GGAAACGCCGTTAACGGGAG+TGG - chr6.4:46066538-46066557 None:intergenic 60.0%
!! CGCCGTTGGTGTCGATGGTA+AGG + chr6.4:46067066-46067085 MS.gene062660:CDS 60.0%
!! TGGATCGCCGTTGGTGTCGA+TGG + chr6.4:46067061-46067080 MS.gene062660:CDS 60.0%
!!! TCAGCCGTTTTTTGGCGGCG+AGG + chr6.4:46067010-46067029 MS.gene062660:CDS 60.0%
CACCGGAACTGTCTCCGGCA+AGG - chr6.4:46066911-46066930 None:intergenic 65.0%
GAAAACTGAACCCGCCGCCG+TGG - chr6.4:46066689-46066708 None:intergenic 65.0%
TGTAAGCGGGCCGAATGCGG+AGG + chr6.4:46067151-46067170 MS.gene062660:CDS 65.0%
CGGCGAGGAACGGACCGATG+CGG + chr6.4:46067025-46067044 MS.gene062660:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 46066390 46067406 46066390 ID=MS.gene062660
chr6.4 mRNA 46066390 46067406 46066390 ID=MS.gene062660.t1;Parent=MS.gene062660
chr6.4 exon 46066390 46067406 46066390 ID=MS.gene062660.t1.exon1;Parent=MS.gene062660.t1
chr6.4 CDS 46066390 46067406 46066390 ID=cds.MS.gene062660.t1;Parent=MS.gene062660.t1
Gene Sequence

>MS.gene062660

ATGTCAGACTCAACACCTCTTCTTCCTTGGAAAGCCAGAGCTACCATTTCACTTCTTTCACTTTTATTCGGCGCTTCTTCTCGCTCTAACGGCACCGTCAATCGCCGTCTCATTAACTTCTTCAGTCTCAATGCCTCACCTAACGCCACTCCCGTTAACGGCGTTTCCACCAAAGACATTACCGTTAACGCCGAAAATAACGTTTGGTTTCGTCTCTTTACTCCCACTGTTGCCGGAGAAGTCATCGGAGATGGTGGTGCCACCAAAACAGCCTCCCTTCCTGTCATCATTTACTTCCACGGCGGCGGGTTCAGTTTTCTTTCCCCTTCCTCAATCTACCACGATGCTTTATGCCGTAGACTCTGCAGGGAAATTTTTGCTGTTGTCGTCTCTGTCAACTACCGCCTTACACCGGAGCATCGATATCCGTCGCAATATGATGATGGAGAGGCTGTGCTGAAATTTTTGGAAGAGAATAGAAAGGTTTTACCGGAAAATGCTGATGTGTCAAAATGTTTCCTTGCCGGAGACAGTTCCGGTGCAAATTTAGCACATCACCTTGCAGTTCGGGTTTGTAAAGCTGGGCTCCGGGAAATCCGGATTATCGGGTTGGTATCCATTCAGCCGTTTTTTGGCGGCGAGGAACGGACCGATGCGGAGATTAAACTTGATGGATCGCCGTTGGTGTCGATGGTAAGGACGGATTGGTGGTGGAAGGTGTTCTTACCGGAGGGATCAAACCGAGATCATGACGCGGTGAATGTAAGCGGGCCGAATGCGGAGGATTTGTCGGGTTTGGATTTTCCGGATACGCTTGTTTTTATTGGTGGATTTGATCCTTTGAATGATTGGCAAAAGAGGTATTATGATTGGTTAAAGAAATGTGGGAAAAAAGCTGAGTTGATTGAATATCCAAACATGGTTCATGTTTTTTATGTTTTTCCTGATCTGCCTGAATCTACTCAGATGATTATGCAAGTCAAGGAGTTTGTCAACAAAGTGTCCAATTCTAAATGA
Protein sequence

>MS.gene062660.t1

MSDSTPLLPWKARATISLLSLLFGASSRSNGTVNRRLINFFSLNASPNATPVNGVSTKDITVNAENNVWFRLFTPTVAGEVIGDGGATKTASLPVIIYFHGGGFSFLSPSSIYHDALCRRLCREIFAVVVSVNYRLTPEHRYPSQYDDGEAVLKFLEENRKVLPENADVSKCFLAGDSSGANLAHHLAVRVCKAGLREIRIIGLVSIQPFFGGEERTDAEIKLDGSPLVSMVRTDWWWKVFLPEGSNRDHDAVNVSGPNAEDLSGLDFPDTLVFIGGFDPLNDWQKRYYDWLKKCGKKAELIEYPNMVHVFYVFPDLPESTQMIMQVKEFVNKVSNSK