Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063101.t1 | XP_024635160.1 | 94 | 533 | 26 | 3 | 5 | 534 | 30 | 559 | 1.00E-297 | 1031.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063101.t1 | A0A1P8B8F8 | 36.5 | 469 | 281 | 10 | 64 | 521 | 89 | 551 | 2.4e-85 | 317.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063101.t1 | A0A396J1W7 | 94.0 | 533 | 26 | 3 | 5 | 534 | 30 | 559 | 7.3e-298 | 1031.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050099 | MS.gene063101 | 0.806381 | 8.46E-50 | -1.69E-46 |
| MS.gene051471 | MS.gene063101 | 0.808581 | 2.89E-50 | -1.69E-46 |
| MS.gene051662 | MS.gene063101 | 0.801334 | 9.46E-49 | -1.69E-46 |
| MS.gene060476 | MS.gene063101 | 0.830339 | 3.10E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063101 | MS.gene003507 | PPI |
| MS.gene063101 | MS.gene032541 | PPI |
| MS.gene99993 | MS.gene063101 | PPI |
| MS.gene054660 | MS.gene063101 | PPI |
| MS.gene90963 | MS.gene063101 | PPI |
| MS.gene063101 | MS.gene75410 | PPI |
| MS.gene063101 | MS.gene53185 | PPI |
| MS.gene62099 | MS.gene063101 | PPI |
| MS.gene044959 | MS.gene063101 | PPI |
| MS.gene063101 | MS.gene59021 | PPI |
| MS.gene74061 | MS.gene063101 | PPI |
| MS.gene057723 | MS.gene063101 | PPI |
| MS.gene062453 | MS.gene063101 | PPI |
| MS.gene52090 | MS.gene063101 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063101.t1 | MTR_3g117800 | 94.019 | 535 | 24 | 4 | 4 | 534 | 5 | 535 | 0.0 | 1035 |
| MS.gene063101.t1 | MTR_3g117800 | 97.095 | 482 | 13 | 1 | 53 | 534 | 4 | 484 | 0.0 | 979 |
| MS.gene063101.t1 | MTR_3g117800 | 97.582 | 455 | 10 | 1 | 80 | 534 | 1 | 454 | 0.0 | 932 |
| MS.gene063101.t1 | MTR_4g074070 | 39.630 | 540 | 281 | 11 | 13 | 521 | 22 | 547 | 1.23e-130 | 392 |
| MS.gene063101.t1 | MTR_5g049180 | 39.662 | 532 | 279 | 8 | 13 | 513 | 22 | 542 | 3.32e-130 | 391 |
| MS.gene063101.t1 | MTR_7g024420 | 39.130 | 529 | 280 | 8 | 13 | 510 | 22 | 539 | 3.00e-129 | 389 |
| MS.gene063101.t1 | MTR_1g106200 | 38.986 | 513 | 274 | 9 | 13 | 493 | 31 | 536 | 1.50e-115 | 354 |
| MS.gene063101.t1 | MTR_1g106910 | 38.041 | 531 | 287 | 11 | 13 | 510 | 31 | 552 | 3.98e-114 | 350 |
| MS.gene063101.t1 | MTR_1g106770 | 35.337 | 549 | 311 | 10 | 20 | 532 | 4 | 544 | 2.37e-111 | 342 |
| MS.gene063101.t1 | MTR_1g106790 | 36.911 | 531 | 293 | 11 | 13 | 510 | 31 | 552 | 3.53e-110 | 340 |
| MS.gene063101.t1 | MTR_1g106200 | 36.257 | 513 | 255 | 9 | 13 | 493 | 37 | 509 | 4.98e-103 | 320 |
| MS.gene063101.t1 | MTR_3g103610 | 33.714 | 525 | 308 | 14 | 25 | 534 | 241 | 740 | 2.28e-77 | 258 |
| MS.gene063101.t1 | MTR_1g017020 | 32.079 | 505 | 322 | 9 | 39 | 534 | 411 | 903 | 2.78e-76 | 258 |
| MS.gene063101.t1 | MTR_4g121520 | 31.373 | 204 | 110 | 5 | 276 | 477 | 223 | 398 | 1.82e-24 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063101.t1 | AT4G38650 | 65.434 | 541 | 180 | 3 | 1 | 534 | 22 | 562 | 0.0 | 754 |
| MS.gene063101.t1 | AT4G38300 | 71.483 | 263 | 64 | 2 | 163 | 424 | 12 | 264 | 9.51e-138 | 400 |
| MS.gene063101.t1 | AT4G33840 | 37.163 | 557 | 305 | 9 | 13 | 534 | 25 | 571 | 3.97e-132 | 396 |
| MS.gene063101.t1 | AT4G33830 | 38.768 | 552 | 292 | 11 | 13 | 529 | 26 | 566 | 1.17e-129 | 390 |
| MS.gene063101.t1 | AT4G33860 | 39.130 | 529 | 283 | 10 | 13 | 510 | 25 | 545 | 8.51e-128 | 385 |
| MS.gene063101.t1 | AT2G14690 | 35.622 | 539 | 317 | 12 | 13 | 530 | 32 | 561 | 2.84e-102 | 319 |
| MS.gene063101.t1 | AT4G33810 | 36.674 | 469 | 280 | 10 | 64 | 521 | 49 | 511 | 2.20e-100 | 313 |
| MS.gene063101.t1 | AT4G33810 | 36.674 | 469 | 280 | 10 | 64 | 521 | 49 | 511 | 2.20e-100 | 313 |
| MS.gene063101.t1 | AT4G33810 | 36.674 | 469 | 280 | 10 | 64 | 521 | 89 | 551 | 1.02e-99 | 313 |
| MS.gene063101.t1 | AT4G33810 | 36.674 | 469 | 280 | 10 | 64 | 521 | 89 | 551 | 1.02e-99 | 313 |
| MS.gene063101.t1 | AT4G33810 | 36.674 | 469 | 280 | 10 | 64 | 521 | 89 | 551 | 1.02e-99 | 313 |
| MS.gene063101.t1 | AT4G33820 | 37.063 | 429 | 258 | 7 | 64 | 486 | 89 | 511 | 2.98e-93 | 296 |
| MS.gene063101.t1 | AT1G58370 | 32.016 | 506 | 322 | 10 | 39 | 534 | 421 | 914 | 1.25e-78 | 265 |
| MS.gene063101.t1 | AT1G58370 | 32.016 | 506 | 322 | 10 | 39 | 534 | 449 | 942 | 2.39e-78 | 265 |
| MS.gene063101.t1 | AT1G10050 | 33.543 | 477 | 301 | 10 | 65 | 534 | 628 | 1095 | 6.62e-74 | 254 |
| MS.gene063101.t1 | AT1G10050 | 33.543 | 477 | 301 | 10 | 65 | 534 | 596 | 1063 | 6.72e-74 | 254 |
| MS.gene063101.t1 | AT1G10050 | 33.543 | 477 | 301 | 10 | 65 | 534 | 596 | 1063 | 6.72e-74 | 254 |
| MS.gene063101.t1 | AT4G08160 | 30.989 | 526 | 331 | 11 | 25 | 534 | 240 | 749 | 1.49e-69 | 238 |
| MS.gene063101.t1 | AT4G08160 | 33.489 | 427 | 266 | 8 | 25 | 442 | 240 | 657 | 5.40e-63 | 218 |
Find 105 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGGAGAATATAGAATT+AGG | 0.197889 | 3.3:+95703628 | MS.gene063101:CDS |
| TTATTTGTAGGCAATTTATT+TGG | 0.199684 | 3.3:+95703389 | MS.gene063101:intron |
| ACCCATGCAGGATTGTATTT+AGG | 0.215174 | 3.3:-95702807 | None:intergenic |
| GGGGTTTCTTCTTCTTTCTA+TGG | 0.261359 | 3.3:+95701537 | MS.gene063101:CDS |
| CCCATGCAGGATTGTATTTA+GGG | 0.265487 | 3.3:-95702806 | None:intergenic |
| TCTTTGAAAACGAGCTTAAA+TGG | 0.282741 | 3.3:+95702670 | MS.gene063101:CDS |
| GCATGGGTTCTTAACCTTAC+AGG | 0.285919 | 3.3:+95702822 | MS.gene063101:CDS |
| CTCCATTGGTGGTGAGTAAA+TGG | 0.299076 | 3.3:-95702353 | None:intergenic |
| CTCTAACAAATTGCATCATT+TGG | 0.305368 | 3.3:-95702740 | None:intergenic |
| CCTTGTAATTTCCTTCCATT+AGG | 0.307008 | 3.3:-95702528 | None:intergenic |
| TTCACAAACCAATTCTGATA+TGG | 0.315882 | 3.3:-95702630 | None:intergenic |
| AAGAGCTATCCTAGACAAAT+TGG | 0.323111 | 3.3:+95703187 | MS.gene063101:CDS |
| TGTAAGCAGTAGAGTCATAT+AGG | 0.332357 | 3.3:-95701644 | None:intergenic |
| GCGATAGCAAAGACCATTCT+TGG | 0.334413 | 3.3:+95702600 | MS.gene063101:CDS |
| CTTGTAATTTCCTTCCATTA+GGG | 0.341062 | 3.3:-95702527 | None:intergenic |
| CATTGTCTGTGAGGCACATT+TGG | 0.350045 | 3.3:-95703494 | None:intergenic |
| ATATCAAAAGACTTTCCTAT+TGG | 0.362210 | 3.3:+95702573 | MS.gene063101:CDS |
| GCAACATACCATATCAGAAT+TGG | 0.364428 | 3.3:+95702622 | MS.gene063101:CDS |
| GTAAGCAGTAGAGTCATATA+GGG | 0.368725 | 3.3:-95701643 | None:intergenic |
| GCTCTTATAAGTGGAAGATT+TGG | 0.368945 | 3.3:-95703170 | None:intergenic |
| CCACCGTAAAGTGGCTTCTC+TGG | 0.371358 | 3.3:-95701785 | None:intergenic |
| ATGAGACATATAACTGTATT+GGG | 0.377080 | 3.3:+95702186 | MS.gene063101:CDS |
| TACAGATTCAGTTATGATAA+AGG | 0.377300 | 3.3:+95702145 | MS.gene063101:CDS |
| TGGACAGCACTTCATCCATA+TGG | 0.380084 | 3.3:+95703465 | MS.gene063101:CDS |
| AATGAGACATATAACTGTAT+TGG | 0.393839 | 3.3:+95702185 | MS.gene063101:CDS |
| CATCCAGAGAAGCCACTTTA+CGG | 0.403538 | 3.3:+95701782 | MS.gene063101:CDS |
| CTTAGGAGAATATAGAATTA+GGG | 0.404134 | 3.3:+95703629 | MS.gene063101:CDS |
| ATCAGAATTGGTTTGTGAAA+CGG | 0.414114 | 3.3:+95702634 | MS.gene063101:CDS |
| TGGCAAACTGGTCGTGTAGA+AGG | 0.419661 | 3.3:+95703567 | MS.gene063101:CDS |
| CTTCTTCAAGAGTGGCAAAC+TGG | 0.421800 | 3.3:+95703555 | MS.gene063101:CDS |
| CAGTGAATGGGATAATGCTT+TGG | 0.423472 | 3.3:+95703445 | MS.gene063101:CDS |
| TTCTCACACCCTTCAGTGAA+TGG | 0.434692 | 3.3:+95703432 | MS.gene063101:CDS |
| CACATTTGGTAGCACCCATA+TGG | 0.442952 | 3.3:-95703480 | None:intergenic |
| CAACACTAGATCTTCCCGTT+TGG | 0.443376 | 3.3:+95703210 | MS.gene063101:CDS |
| ATAAGAGAACTAAGACAATA+TGG | 0.448976 | 3.3:+95703104 | MS.gene063101:CDS |
| TGCTACATTTCATTTCTTTG+AGG | 0.453293 | 3.3:+95702977 | MS.gene063101:CDS |
| AAGAAATGAAATGTAGCATT+GGG | 0.454110 | 3.3:-95702972 | None:intergenic |
| CAGTGTTGATGATATATTGT+TGG | 0.461856 | 3.3:-95702382 | None:intergenic |
| ATCAATCTCAGTAAGCCAAA+CGG | 0.466197 | 3.3:-95703225 | None:intergenic |
| ATCTTAACTGTGTACCTGTA+AGG | 0.467889 | 3.3:-95702836 | None:intergenic |
| TCAATCTCAGTAAGCCAAAC+GGG | 0.472110 | 3.3:-95703224 | None:intergenic |
| AAAGAAATGAAATGTAGCAT+TGG | 0.480004 | 3.3:-95702973 | None:intergenic |
| CAAAACAGAATTCATACATT+GGG | 0.480784 | 3.3:+95702899 | MS.gene063101:CDS |
| GATTTCTACGAACAAAGGCT+TGG | 0.482875 | 3.3:+95702948 | MS.gene063101:CDS |
| CCACTTTACGGTGGAGGAGG+AGG | 0.484097 | 3.3:+95701794 | MS.gene063101:CDS |
| GTTCATGTATCAGACCCTAA+TGG | 0.488462 | 3.3:+95702513 | MS.gene063101:CDS |
| TTTGCTATCGCAGAGCCAAT+AGG | 0.489645 | 3.3:-95702588 | None:intergenic |
| TTTATTTGGAACAAGTATTG+AGG | 0.493659 | 3.3:+95703403 | MS.gene063101:CDS |
| AAATGACCAACATCCACGTT+TGG | 0.493661 | 3.3:-95702219 | None:intergenic |
| AAATTAAGTCACAGTGTCAC+AGG | 0.494605 | 3.3:-95703720 | None:intergenic |
| GGACAGCACTTCATCCATAT+GGG | 0.495243 | 3.3:+95703466 | MS.gene063101:CDS |
| TCTAGGATAGCTCTTATAAG+TGG | 0.496749 | 3.3:-95703179 | None:intergenic |
| GATTTCAACAACTTACCATC+AGG | 0.497916 | 3.3:+95703516 | MS.gene063101:CDS |
| AAGCCACTTTACGGTGGAGG+AGG | 0.499159 | 3.3:+95701791 | MS.gene063101:CDS |
| TTCATAAACAAAGTTGCTAA+AGG | 0.499339 | 3.3:-95703017 | None:intergenic |
| GTTGGTTGATTCTCCATTGG+TGG | 0.504409 | 3.3:-95702364 | None:intergenic |
| CCTCCTCCTCCACCGTAAAG+TGG | 0.507893 | 3.3:-95701794 | None:intergenic |
| ATTGTTGGTTGATTCTCCAT+TGG | 0.513327 | 3.3:-95702367 | None:intergenic |
| TGTTGGTCATTTCTCAAAGG+TGG | 0.513377 | 3.3:+95702230 | MS.gene063101:CDS |
| TCTCACACCCTTCAGTGAAT+GGG | 0.515758 | 3.3:+95703433 | MS.gene063101:CDS |
| TTATTTGGAACAAGTATTGA+GGG | 0.519096 | 3.3:+95703404 | MS.gene063101:CDS |
| ATCTGAGTTGTGAAAGAAGA+TGG | 0.523796 | 3.3:-95702285 | None:intergenic |
| CTAGTGTTGCCAATTTGTCT+AGG | 0.527390 | 3.3:-95703196 | None:intergenic |
| ATATGGTATGTTGCCAAGAA+TGG | 0.540598 | 3.3:-95702613 | None:intergenic |
| ACTTTGATTTCTACGAACAA+AGG | 0.545752 | 3.3:+95702943 | MS.gene063101:CDS |
| ACAAAACAGAATTCATACAT+TGG | 0.546953 | 3.3:+95702898 | MS.gene063101:CDS |
| AAGATGGTAGATGAATTTGA+AGG | 0.553423 | 3.3:-95702269 | None:intergenic |
| GAGAAGCCACTTTACGGTGG+AGG | 0.555307 | 3.3:+95701788 | MS.gene063101:CDS |
| TTGGAACAAGTATTGAGGGA+AGG | 0.561612 | 3.3:+95703408 | MS.gene063101:CDS |
| AGCATTATCCCATTCACTGA+AGG | 0.566045 | 3.3:-95703441 | None:intergenic |
| ATCTTCTTTCACAACTCAGA+TGG | 0.566431 | 3.3:+95702287 | MS.gene063101:CDS |
| AGATTATAGAAGACAAGTGA+AGG | 0.569889 | 3.3:-95701866 | None:intergenic |
| ACCCTAAATACAATCCTGCA+TGG | 0.572180 | 3.3:+95702805 | MS.gene063101:CDS |
| ATGGATGGAATTGGTCTCGA+GGG | 0.573124 | 3.3:+95703134 | MS.gene063101:CDS |
| CTCAGATGGTAAAGATCATG+TGG | 0.575507 | 3.3:+95702301 | MS.gene063101:CDS |
| CACACTTGATCATGATACTC+AGG | 0.577347 | 3.3:+95703256 | MS.gene063101:CDS |
| CCTAATGGAAGGAAATTACA+AGG | 0.585093 | 3.3:+95702528 | MS.gene063101:CDS |
| TCAACTTTCTCTCTATGTAG+AGG | 0.586344 | 3.3:+95703678 | MS.gene063101:CDS |
| GCATTATCCCATTCACTGAA+GGG | 0.590706 | 3.3:-95703440 | None:intergenic |
| CAACTTACCATCAGGTGATG+TGG | 0.598575 | 3.3:+95703524 | MS.gene063101:CDS |
| CCCTAAATACAATCCTGCAT+GGG | 0.602674 | 3.3:+95702806 | MS.gene063101:CDS |
| GGATGTTGGTCATTTCTCAA+AGG | 0.605842 | 3.3:+95702227 | MS.gene063101:CDS |
| GTCTGATACATGAACAGTGA+CGG | 0.610322 | 3.3:-95702505 | None:intergenic |
| TATGGATGGAATTGGTCTCG+AGG | 0.616485 | 3.3:+95703133 | MS.gene063101:CDS |
| GCCAACAAAATCATAGCTAG+AGG | 0.617131 | 3.3:+95702762 | MS.gene063101:CDS |
| CAACAACACCAACACGAACA+CGG | 0.618184 | 3.3:+95701838 | MS.gene063101:CDS |
| TCTGCCTTCATGAGGCTCTG+TGG | 0.618660 | 3.3:-95702697 | None:intergenic |
| ATGTATCAGACCCTAATGGA+AGG | 0.621861 | 3.3:+95702517 | MS.gene063101:CDS |
| TAGTTGACTCTGCCTTCATG+AGG | 0.625434 | 3.3:-95702705 | None:intergenic |
| TGGATAAACTTCTTCAAGAG+TGG | 0.627938 | 3.3:+95703547 | MS.gene063101:CDS |
| AATTAAGTCACAGTGTCACA+GGG | 0.628706 | 3.3:-95703719 | None:intergenic |
| TATGCCACAGAGCCTCATGA+AGG | 0.641188 | 3.3:+95702693 | MS.gene063101:CDS |
| TTATCCACCACATCACCTGA+TGG | 0.643051 | 3.3:-95703531 | None:intergenic |
| CTTACCATCAGGTGATGTGG+TGG | 0.645932 | 3.3:+95703527 | MS.gene063101:CDS |
| AGCCATTTACTCACCACCAA+TGG | 0.646406 | 3.3:+95702351 | MS.gene063101:CDS |
| ATTCAGTTATGATAAAGGCA+AGG | 0.650648 | 3.3:+95702150 | MS.gene063101:CDS |
| GAAGGTATCACAGATGAGCA+TGG | 0.651877 | 3.3:+95703585 | MS.gene063101:CDS |
| AGGTGAAGCCGTGTTCGTGT+TGG | 0.662305 | 3.3:-95701846 | None:intergenic |
| GTAAGGTTAAGAACCCATGC+AGG | 0.663112 | 3.3:-95702819 | None:intergenic |
| TAAGCAGTAGAGTCATATAG+GGG | 0.663519 | 3.3:-95701642 | None:intergenic |
| TGACTCTACTGCTTACACTC+AGG | 0.668323 | 3.3:+95701650 | MS.gene063101:CDS |
| GGCTGCTACAGTATGGGTGA+AGG | 0.668347 | 3.3:+95702115 | MS.gene063101:intron |
| GCGTTGACGCTTATATCTCA+CGG | 0.669191 | 3.3:+95703081 | MS.gene063101:CDS |
| CCAGAGAAGCCACTTTACGG+TGG | 0.680549 | 3.3:+95701785 | MS.gene063101:CDS |
| TGTTGAAATCATTGTCTGTG+AGG | 0.726848 | 3.3:-95703503 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATGAATTGAATCAATAAA+AGG | - | chr3.3:95701575-95701594 | None:intergenic | 20.0% |
| !! | TTATTTGTAGGCAATTTATT+TGG | + | chr3.3:95703389-95703408 | MS.gene063101:intron | 20.0% |
| ! | AAAGAAATGAAATGTAGCAT+TGG | - | chr3.3:95702976-95702995 | None:intergenic | 25.0% |
| ! | AAGAAATGAAATGTAGCATT+GGG | - | chr3.3:95702975-95702994 | None:intergenic | 25.0% |
| ! | AATGAGACATATAACTGTAT+TGG | + | chr3.3:95702185-95702204 | MS.gene063101:CDS | 25.0% |
| ! | ACAAAACAGAATTCATACAT+TGG | + | chr3.3:95702898-95702917 | MS.gene063101:CDS | 25.0% |
| ! | ATAAGAGAACTAAGACAATA+TGG | + | chr3.3:95703104-95703123 | MS.gene063101:CDS | 25.0% |
| ! | ATATCAAAAGACTTTCCTAT+TGG | + | chr3.3:95702573-95702592 | MS.gene063101:CDS | 25.0% |
| ! | ATGAGACATATAACTGTATT+GGG | + | chr3.3:95702186-95702205 | MS.gene063101:CDS | 25.0% |
| ! | CAAAACAGAATTCATACATT+GGG | + | chr3.3:95702899-95702918 | MS.gene063101:CDS | 25.0% |
| ! | CTTAGGAGAATATAGAATTA+GGG | + | chr3.3:95703629-95703648 | MS.gene063101:CDS | 25.0% |
| ! | TACAGATTCAGTTATGATAA+AGG | + | chr3.3:95702145-95702164 | MS.gene063101:CDS | 25.0% |
| ! | TCTTAGGAGAATATAGAATT+AGG | + | chr3.3:95703628-95703647 | MS.gene063101:CDS | 25.0% |
| ! | TTCATAAACAAAGTTGCTAA+AGG | - | chr3.3:95703020-95703039 | None:intergenic | 25.0% |
| !! | GTATGAATTCTGTTTTGTAT+TGG | - | chr3.3:95702896-95702915 | None:intergenic | 25.0% |
| !! | TTTATTTGGAACAAGTATTG+AGG | + | chr3.3:95703403-95703422 | MS.gene063101:CDS | 25.0% |
| !!! | AAGACAATATGGTGTTTTTA+TGG | + | chr3.3:95703115-95703134 | MS.gene063101:CDS | 25.0% |
| !!! | GCATCAATTTATGTTGTTTT+TGG | - | chr3.3:95702415-95702434 | None:intergenic | 25.0% |
| !!! | TTATTTGGAACAAGTATTGA+GGG | + | chr3.3:95703404-95703423 | MS.gene063101:CDS | 25.0% |
| AAGATGGTAGATGAATTTGA+AGG | - | chr3.3:95702272-95702291 | None:intergenic | 30.0% | |
| AGATTATAGAAGACAAGTGA+AGG | - | chr3.3:95701869-95701888 | None:intergenic | 30.0% | |
| ATTAAAAATGATTCCGTTGC+CGG | + | chr3.3:95701982-95702001 | MS.gene063101:intron | 30.0% | |
| ATTCAGTTATGATAAAGGCA+AGG | + | chr3.3:95702150-95702169 | MS.gene063101:CDS | 30.0% | |
| CTCTAACAAATTGCATCATT+TGG | - | chr3.3:95702743-95702762 | None:intergenic | 30.0% | |
| CTTGTAATTTCCTTCCATTA+GGG | - | chr3.3:95702530-95702549 | None:intergenic | 30.0% | |
| GGATTATTGTTGATGTCATT+GGG | + | chr3.3:95702063-95702082 | MS.gene063101:intron | 30.0% | |
| TGCCTACAAATAAAGAATGA+AGG | - | chr3.3:95703382-95703401 | None:intergenic | 30.0% | |
| TGCTACATTTCATTTCTTTG+AGG | + | chr3.3:95702977-95702996 | MS.gene063101:CDS | 30.0% | |
| TTCACAAACCAATTCTGATA+TGG | - | chr3.3:95702633-95702652 | None:intergenic | 30.0% | |
| ! | ACTTTGATTTCTACGAACAA+AGG | + | chr3.3:95702943-95702962 | MS.gene063101:CDS | 30.0% |
| ! | ATGGTTCACATAGCTTTTAT+GGG | + | chr3.3:95703604-95703623 | MS.gene063101:CDS | 30.0% |
| ! | GACACTATCTATTCTTTTTC+TGG | + | chr3.3:95701896-95701915 | MS.gene063101:CDS | 30.0% |
| ! | TAGAGGACACAATATTTTCT+GGG | + | chr3.3:95702779-95702798 | MS.gene063101:CDS | 30.0% |
| ! | TCTTTGAAAACGAGCTTAAA+TGG | + | chr3.3:95702670-95702689 | MS.gene063101:CDS | 30.0% |
| ! | TGCCTTCATTCTTTATTTGT+AGG | + | chr3.3:95703377-95703396 | MS.gene063101:intron | 30.0% |
| !! | ATCAGAATTGGTTTGTGAAA+CGG | + | chr3.3:95702634-95702653 | MS.gene063101:CDS | 30.0% |
| !! | CAATATGGTGTTTTTATGGA+TGG | + | chr3.3:95703119-95703138 | MS.gene063101:CDS | 30.0% |
| !! | CAGTGTTGATGATATATTGT+TGG | - | chr3.3:95702385-95702404 | None:intergenic | 30.0% |
| AAGAGCTATCCTAGACAAAT+TGG | + | chr3.3:95703187-95703206 | MS.gene063101:CDS | 35.0% | |
| ATAATCCGTTGTAGTCTAGT+TGG | - | chr3.3:95702050-95702069 | None:intergenic | 35.0% | |
| ATATGGTATGTTGCCAAGAA+TGG | - | chr3.3:95702616-95702635 | None:intergenic | 35.0% | |
| ATCAATCTCAGTAAGCCAAA+CGG | - | chr3.3:95703228-95703247 | None:intergenic | 35.0% | |
| ATCTGAGTTGTGAAAGAAGA+TGG | - | chr3.3:95702288-95702307 | None:intergenic | 35.0% | |
| ATCTTAACTGTGTACCTGTA+AGG | - | chr3.3:95702839-95702858 | None:intergenic | 35.0% | |
| ATCTTCTTTCACAACTCAGA+TGG | + | chr3.3:95702287-95702306 | MS.gene063101:CDS | 35.0% | |
| CCTAATGGAAGGAAATTACA+AGG | + | chr3.3:95702528-95702547 | MS.gene063101:CDS | 35.0% | |
| CCTTGTAATTTCCTTCCATT+AGG | - | chr3.3:95702531-95702550 | None:intergenic | 35.0% | |
| CGGATTATTGTTGATGTCAT+TGG | + | chr3.3:95702062-95702081 | MS.gene063101:intron | 35.0% | |
| GATTTCAACAACTTACCATC+AGG | + | chr3.3:95703516-95703535 | MS.gene063101:CDS | 35.0% | |
| GCAACATACCATATCAGAAT+TGG | + | chr3.3:95702622-95702641 | MS.gene063101:CDS | 35.0% | |
| GCTCTTATAAGTGGAAGATT+TGG | - | chr3.3:95703173-95703192 | None:intergenic | 35.0% | |
| GTAAGCAGTAGAGTCATATA+GGG | - | chr3.3:95701646-95701665 | None:intergenic | 35.0% | |
| TAAGCAGTAGAGTCATATAG+GGG | - | chr3.3:95701645-95701664 | None:intergenic | 35.0% | |
| TCAACTTTCTCTCTATGTAG+AGG | + | chr3.3:95703678-95703697 | MS.gene063101:CDS | 35.0% | |
| TGGATAAACTTCTTCAAGAG+TGG | + | chr3.3:95703547-95703566 | MS.gene063101:CDS | 35.0% | |
| TGTAAGCAGTAGAGTCATAT+AGG | - | chr3.3:95701647-95701666 | None:intergenic | 35.0% | |
| TGTTGAAATCATTGTCTGTG+AGG | - | chr3.3:95703506-95703525 | None:intergenic | 35.0% | |
| TTAAAAATGATTCCGTTGCC+GGG | + | chr3.3:95701983-95702002 | MS.gene063101:intron | 35.0% | |
| ! | ATTGTTGGTTGATTCTCCAT+TGG | - | chr3.3:95702370-95702389 | None:intergenic | 35.0% |
| ! | CATAGCTTTTATGGGTTCTT+AGG | + | chr3.3:95703612-95703631 | MS.gene063101:CDS | 35.0% |
| ! | CATGGTTCACATAGCTTTTA+TGG | + | chr3.3:95703603-95703622 | MS.gene063101:CDS | 35.0% |
| ! | CTAGAGGACACAATATTTTC+TGG | + | chr3.3:95702778-95702797 | MS.gene063101:CDS | 35.0% |
| ! | TCCTCTAGCTATGATTTTGT+TGG | - | chr3.3:95702766-95702785 | None:intergenic | 35.0% |
| ! | TCTAGGATAGCTCTTATAAG+TGG | - | chr3.3:95703182-95703201 | None:intergenic | 35.0% |
| !! | CGATATTGTTTTGTTGCAGA+TGG | + | chr3.3:95701618-95701637 | MS.gene063101:intron | 35.0% |
| !! | GGTGTTTTTATGGATGGAAT+TGG | + | chr3.3:95703125-95703144 | MS.gene063101:CDS | 35.0% |
| AAATGACCAACATCCACGTT+TGG | - | chr3.3:95702222-95702241 | None:intergenic | 40.0% | |
| ACCCATGCAGGATTGTATTT+AGG | - | chr3.3:95702810-95702829 | None:intergenic | 40.0% | |
| ACCCTAAATACAATCCTGCA+TGG | + | chr3.3:95702805-95702824 | MS.gene063101:CDS | 40.0% | |
| AGCATTATCCCATTCACTGA+AGG | - | chr3.3:95703444-95703463 | None:intergenic | 40.0% | |
| ATGTATCAGACCCTAATGGA+AGG | + | chr3.3:95702517-95702536 | MS.gene063101:CDS | 40.0% | |
| CACACTTGATCATGATACTC+AGG | + | chr3.3:95703256-95703275 | MS.gene063101:CDS | 40.0% | |
| CACGTCAGCATATATAACGA+TGG | - | chr3.3:95702096-95702115 | None:intergenic | 40.0% | |
| CAGTGAATGGGATAATGCTT+TGG | + | chr3.3:95703445-95703464 | MS.gene063101:CDS | 40.0% | |
| CATCGTTATATATGCTGACG+TGG | + | chr3.3:95702094-95702113 | MS.gene063101:intron | 40.0% | |
| CCCATGCAGGATTGTATTTA+GGG | - | chr3.3:95702809-95702828 | None:intergenic | 40.0% | |
| CCCTAAATACAATCCTGCAT+GGG | + | chr3.3:95702806-95702825 | MS.gene063101:CDS | 40.0% | |
| CCTAACCAACTAGACTACAA+CGG | + | chr3.3:95702042-95702061 | MS.gene063101:intron | 40.0% | |
| CTAGTGTTGCCAATTTGTCT+AGG | - | chr3.3:95703199-95703218 | None:intergenic | 40.0% | |
| CTCAGATGGTAAAGATCATG+TGG | + | chr3.3:95702301-95702320 | MS.gene063101:CDS | 40.0% | |
| GATTTCTACGAACAAAGGCT+TGG | + | chr3.3:95702948-95702967 | MS.gene063101:CDS | 40.0% | |
| GCATTATCCCATTCACTGAA+GGG | - | chr3.3:95703443-95703462 | None:intergenic | 40.0% | |
| GCCAACAAAATCATAGCTAG+AGG | + | chr3.3:95702762-95702781 | MS.gene063101:CDS | 40.0% | |
| GGATGTTGGTCATTTCTCAA+AGG | + | chr3.3:95702227-95702246 | MS.gene063101:CDS | 40.0% | |
| GGGGTTTCTTCTTCTTTCTA+TGG | + | chr3.3:95701537-95701556 | MS.gene063101:CDS | 40.0% | |
| GTCTAGTTGGTTAGGATACT+CGG | - | chr3.3:95702037-95702056 | None:intergenic | 40.0% | |
| GTCTGATACATGAACAGTGA+CGG | - | chr3.3:95702508-95702527 | None:intergenic | 40.0% | |
| GTTCATGTATCAGACCCTAA+TGG | + | chr3.3:95702513-95702532 | MS.gene063101:CDS | 40.0% | |
| TCAATCTCAGTAAGCCAAAC+GGG | - | chr3.3:95703227-95703246 | None:intergenic | 40.0% | |
| TGTTGGTCATTTCTCAAAGG+TGG | + | chr3.3:95702230-95702249 | MS.gene063101:CDS | 40.0% | |
| TTGATCATGATACTCAGGTG+AGG | + | chr3.3:95703261-95703280 | MS.gene063101:intron | 40.0% | |
| ! | TTTTAGCCAAACGTGGATGT+TGG | + | chr3.3:95702213-95702232 | MS.gene063101:CDS | 40.0% |
| !! | TTGGAACAAGTATTGAGGGA+AGG | + | chr3.3:95703408-95703427 | MS.gene063101:CDS | 40.0% |
| AGCCATTTACTCACCACCAA+TGG | + | chr3.3:95702351-95702370 | MS.gene063101:CDS | 45.0% | |
| CAACAACACCAACACGAACA+CGG | + | chr3.3:95701838-95701857 | MS.gene063101:CDS | 45.0% | |
| CAACACTAGATCTTCCCGTT+TGG | + | chr3.3:95703210-95703229 | MS.gene063101:CDS | 45.0% | |
| CAACTTACCATCAGGTGATG+TGG | + | chr3.3:95703524-95703543 | MS.gene063101:CDS | 45.0% | |
| CATTGTCTGTGAGGCACATT+TGG | - | chr3.3:95703497-95703516 | None:intergenic | 45.0% | |
| CCGTTGTAGTCTAGTTGGTT+AGG | - | chr3.3:95702045-95702064 | None:intergenic | 45.0% | |
| CTTCTTCAAGAGTGGCAAAC+TGG | + | chr3.3:95703555-95703574 | MS.gene063101:CDS | 45.0% | |
| GCATGGGTTCTTAACCTTAC+AGG | + | chr3.3:95702822-95702841 | MS.gene063101:CDS | 45.0% | |
| GCGATAGCAAAGACCATTCT+TGG | + | chr3.3:95702600-95702619 | MS.gene063101:CDS | 45.0% | |
| GGACAGCACTTCATCCATAT+GGG | + | chr3.3:95703466-95703485 | MS.gene063101:CDS | 45.0% | |
| GTAAGGTTAAGAACCCATGC+AGG | - | chr3.3:95702822-95702841 | None:intergenic | 45.0% | |
| TCTCACACCCTTCAGTGAAT+GGG | + | chr3.3:95703433-95703452 | MS.gene063101:CDS | 45.0% | |
| TGACTCTACTGCTTACACTC+AGG | + | chr3.3:95701650-95701669 | MS.gene063101:CDS | 45.0% | |
| TGGACAGCACTTCATCCATA+TGG | + | chr3.3:95703465-95703484 | MS.gene063101:CDS | 45.0% | |
| TTATCCACCACATCACCTGA+TGG | - | chr3.3:95703534-95703553 | None:intergenic | 45.0% | |
| TTCTCACACCCTTCAGTGAA+TGG | + | chr3.3:95703432-95703451 | MS.gene063101:CDS | 45.0% | |
| ! | ATGGATGGAATTGGTCTCGA+GGG | + | chr3.3:95703134-95703153 | MS.gene063101:CDS | 45.0% |
| ! | CACATTTGGTAGCACCCATA+TGG | - | chr3.3:95703483-95703502 | None:intergenic | 45.0% |
| ! | CATCCAGAGAAGCCACTTTA+CGG | + | chr3.3:95701782-95701801 | MS.gene063101:CDS | 45.0% |
| ! | GCGTTGACGCTTATATCTCA+CGG | + | chr3.3:95703081-95703100 | MS.gene063101:CDS | 45.0% |
| ! | GTTGGTTGATTCTCCATTGG+TGG | - | chr3.3:95702367-95702386 | None:intergenic | 45.0% |
| ! | TAGTTGACTCTGCCTTCATG+AGG | - | chr3.3:95702708-95702727 | None:intergenic | 45.0% |
| ! | TATGGATGGAATTGGTCTCG+AGG | + | chr3.3:95703133-95703152 | MS.gene063101:CDS | 45.0% |
| ! | TTTGCTATCGCAGAGCCAAT+AGG | - | chr3.3:95702591-95702610 | None:intergenic | 45.0% |
| !! | CTCCATTGGTGGTGAGTAAA+TGG | - | chr3.3:95702356-95702375 | None:intergenic | 45.0% |
| !! | GAAGGTATCACAGATGAGCA+TGG | + | chr3.3:95703585-95703604 | MS.gene063101:CDS | 45.0% |
| CTACTGCTTACACTCAGGTG+AGG | + | chr3.3:95701655-95701674 | MS.gene063101:intron | 50.0% | |
| CTTACCATCAGGTGATGTGG+TGG | + | chr3.3:95703527-95703546 | MS.gene063101:CDS | 50.0% | |
| GTAGCTAGCTAGCTAGCTAG+AGG | + | chr3.3:95703283-95703302 | MS.gene063101:intron | 50.0% | |
| TATGCCACAGAGCCTCATGA+AGG | + | chr3.3:95702693-95702712 | MS.gene063101:CDS | 50.0% | |
| TGACGTGGCTGCTACAGTAT+GGG | + | chr3.3:95702109-95702128 | MS.gene063101:intron | 50.0% | |
| TGGCAAACTGGTCGTGTAGA+AGG | + | chr3.3:95703567-95703586 | MS.gene063101:CDS | 50.0% | |
| !! | GGGACAGTTTTAGCCAAACG+TGG | + | chr3.3:95702206-95702225 | MS.gene063101:CDS | 50.0% |
| AGGTGAAGCCGTGTTCGTGT+TGG | - | chr3.3:95701849-95701868 | None:intergenic | 55.0% | |
| CCACCGTAAAGTGGCTTCTC+TGG | - | chr3.3:95701788-95701807 | None:intergenic | 55.0% | |
| CTGACGTGGCTGCTACAGTA+TGG | + | chr3.3:95702108-95702127 | MS.gene063101:intron | 55.0% | |
| GGCTGCTACAGTATGGGTGA+AGG | + | chr3.3:95702115-95702134 | MS.gene063101:intron | 55.0% | |
| TCTGCCTTCATGAGGCTCTG+TGG | - | chr3.3:95702700-95702719 | None:intergenic | 55.0% | |
| ! | AAGCCACTTTACGGTGGAGG+AGG | + | chr3.3:95701791-95701810 | MS.gene063101:CDS | 55.0% |
| ! | CCAGAGAAGCCACTTTACGG+TGG | + | chr3.3:95701785-95701804 | MS.gene063101:CDS | 55.0% |
| ! | GAGAAGCCACTTTACGGTGG+AGG | + | chr3.3:95701788-95701807 | MS.gene063101:CDS | 55.0% |
| AGAGACCCGGGTTCAAGTCC+CGG | - | chr3.3:95702004-95702023 | None:intergenic | 60.0% | |
| CCACTTTACGGTGGAGGAGG+AGG | + | chr3.3:95701794-95701813 | MS.gene063101:CDS | 60.0% | |
| CCTCCTCCTCCACCGTAAAG+TGG | - | chr3.3:95701797-95701816 | None:intergenic | 60.0% | |
| GACTTGAACCCGGGTCTCTC+GGG | + | chr3.3:95702005-95702024 | MS.gene063101:intron | 60.0% | |
| GGACTTGAACCCGGGTCTCT+CGG | + | chr3.3:95702004-95702023 | MS.gene063101:intron | 60.0% | |
| CCGGGTTCAAGTCCCGGCAA+CGG | - | chr3.3:95701998-95702017 | None:intergenic | 65.0% | |
| CCGTTGCCGGGACTTGAACC+CGG | + | chr3.3:95701995-95702014 | MS.gene063101:intron | 65.0% | |
| CGTTGCCGGGACTTGAACCC+GGG | + | chr3.3:95701996-95702015 | MS.gene063101:intron | 65.0% | |
| CGGCTCTCACCCGAGAGACC+CGG | - | chr3.3:95702017-95702036 | None:intergenic | 70.0% | |
| GGCTCTCACCCGAGAGACCC+GGG | - | chr3.3:95702016-95702035 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 95701534 | 95703734 | 95701534 | ID=MS.gene063101 |
| chr3.3 | mRNA | 95701534 | 95703734 | 95701534 | ID=MS.gene063101.t1;Parent=MS.gene063101 |
| chr3.3 | exon | 95701534 | 95701558 | 95701534 | ID=MS.gene063101.t1.exon1;Parent=MS.gene063101.t1 |
| chr3.3 | CDS | 95701534 | 95701558 | 95701534 | ID=cds.MS.gene063101.t1;Parent=MS.gene063101.t1 |
| chr3.3 | exon | 95701637 | 95701671 | 95701637 | ID=MS.gene063101.t1.exon2;Parent=MS.gene063101.t1 |
| chr3.3 | CDS | 95701637 | 95701671 | 95701637 | ID=cds.MS.gene063101.t1;Parent=MS.gene063101.t1 |
| chr3.3 | exon | 95701773 | 95701917 | 95701773 | ID=MS.gene063101.t1.exon3;Parent=MS.gene063101.t1 |
| chr3.3 | CDS | 95701773 | 95701917 | 95701773 | ID=cds.MS.gene063101.t1;Parent=MS.gene063101.t1 |
| chr3.3 | exon | 95702126 | 95702403 | 95702126 | ID=MS.gene063101.t1.exon4;Parent=MS.gene063101.t1 |
| chr3.3 | CDS | 95702126 | 95702403 | 95702126 | ID=cds.MS.gene063101.t1;Parent=MS.gene063101.t1 |
| chr3.3 | exon | 95702492 | 95703277 | 95702492 | ID=MS.gene063101.t1.exon5;Parent=MS.gene063101.t1 |
| chr3.3 | CDS | 95702492 | 95703277 | 95702492 | ID=cds.MS.gene063101.t1;Parent=MS.gene063101.t1 |
| chr3.3 | exon | 95703399 | 95703734 | 95703399 | ID=MS.gene063101.t1.exon6;Parent=MS.gene063101.t1 |
| chr3.3 | CDS | 95703399 | 95703734 | 95703399 | ID=cds.MS.gene063101.t1;Parent=MS.gene063101.t1 |
| Gene Sequence |
| Protein sequence |
