Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063368.t1 | XP_003596200.1 | 94.8 | 249 | 13 | 0 | 1 | 249 | 1 | 249 | 1.60E-128 | 468.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063368.t1 | Q9LDY9 | 60.2 | 244 | 79 | 3 | 4 | 237 | 3 | 238 | 1.5e-71 | 270.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063368.t1 | G7IJA0 | 94.8 | 249 | 13 | 0 | 1 | 249 | 1 | 249 | 1.2e-128 | 468.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050060 | MS.gene063368 | 0.810182 | 1.31E-50 | -1.69E-46 |
| MS.gene050404 | MS.gene063368 | 0.834097 | 3.65E-56 | -1.69E-46 |
| MS.gene050406 | MS.gene063368 | 0.834349 | 3.16E-56 | -1.69E-46 |
| MS.gene050426 | MS.gene063368 | -0.818087 | 2.35E-52 | -1.69E-46 |
| MS.gene050529 | MS.gene063368 | 0.815774 | 7.78E-52 | -1.69E-46 |
| MS.gene050812 | MS.gene063368 | 0.837568 | 4.81E-57 | -1.69E-46 |
| MS.gene051171 | MS.gene063368 | 0.862044 | 6.70E-64 | -1.69E-46 |
| MS.gene051242 | MS.gene063368 | 0.855232 | 7.24E-62 | -1.69E-46 |
| MS.gene051244 | MS.gene063368 | 0.849166 | 3.85E-60 | -1.69E-46 |
| MS.gene052469 | MS.gene063368 | 0.851421 | 8.98E-61 | -1.69E-46 |
| MS.gene053330 | MS.gene063368 | 0.842865 | 1.99E-58 | -1.69E-46 |
| MS.gene053971 | MS.gene063368 | 0.826574 | 2.52E-54 | -1.69E-46 |
| MS.gene054884 | MS.gene063368 | -0.810846 | 9.41E-51 | -1.69E-46 |
| MS.gene055370 | MS.gene063368 | 0.83483 | 2.39E-56 | -1.69E-46 |
| MS.gene055539 | MS.gene063368 | 0.815161 | 1.07E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene063368 | 0.80918 | 2.15E-50 | -1.69E-46 |
| MS.gene056305 | MS.gene063368 | 0.812178 | 4.83E-51 | -1.69E-46 |
| MS.gene056633 | MS.gene063368 | 0.867745 | 1.09E-65 | -1.69E-46 |
| MS.gene056664 | MS.gene063368 | 0.869976 | 2.07E-66 | -1.69E-46 |
| MS.gene056796 | MS.gene063368 | 0.809062 | 2.28E-50 | -1.69E-46 |
| MS.gene056903 | MS.gene063368 | 0.817477 | 3.23E-52 | -1.69E-46 |
| MS.gene058142 | MS.gene063368 | 0.808498 | 3.01E-50 | -1.69E-46 |
| MS.gene058158 | MS.gene063368 | -0.82547 | 4.61E-54 | -1.69E-46 |
| MS.gene058233 | MS.gene063368 | 0.803618 | 3.20E-49 | -1.69E-46 |
| MS.gene058276 | MS.gene063368 | 0.858137 | 1.01E-62 | -1.69E-46 |
| MS.gene058743 | MS.gene063368 | 0.877962 | 4.12E-69 | -1.69E-46 |
| MS.gene058746 | MS.gene063368 | 0.859796 | 3.23E-63 | -1.69E-46 |
| MS.gene059512 | MS.gene063368 | 0.807371 | 5.22E-50 | -1.69E-46 |
| MS.gene060407 | MS.gene063368 | 0.848849 | 4.72E-60 | -1.69E-46 |
| MS.gene060717 | MS.gene063368 | 0.829797 | 4.21E-55 | -1.69E-46 |
| MS.gene061231 | MS.gene063368 | 0.859814 | 3.19E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063368.t1 | MTR_2g069470 | 94.779 | 249 | 13 | 0 | 1 | 249 | 1 | 249 | 9.49e-176 | 483 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063368.t1 | AT3G12930 | 59.756 | 246 | 81 | 3 | 2 | 237 | 1 | 238 | 2.47e-96 | 282 |
Find 69 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAGAGCTTTCTATAATT+TGG | 0.135819 | 2.4:-26089279 | MS.gene063368:CDS |
| CATACCCGATAGCATCAATT+TGG | 0.241247 | 2.4:+26089917 | None:intergenic |
| TTGTGAAGCCACTTGTTTAC+TGG | 0.250083 | 2.4:-26089978 | MS.gene063368:CDS |
| TCTCTGCACTTGCAGGCTTT+TGG | 0.287492 | 2.4:+26090286 | None:intergenic |
| GATGAATTATTAAATAACTA+TGG | 0.298468 | 2.4:-26090333 | MS.gene063368:CDS |
| TTTCACCAGTTTCTACAAAA+AGG | 0.300032 | 2.4:-26091648 | MS.gene063368:CDS |
| TCGTCAATCTCTGCACTTGC+AGG | 0.326105 | 2.4:+26090279 | None:intergenic |
| GGTCACCTTCTCCGGCGAAA+TGG | 0.354058 | 2.4:-26091711 | MS.gene063368:CDS |
| ATACCCGATAGCATCAATTT+GGG | 0.374377 | 2.4:+26089918 | None:intergenic |
| GTCACCTTCTCCGGCGAAAT+GGG | 0.375268 | 2.4:-26091710 | MS.gene063368:CDS |
| TTGTTATCAGCTTACATGAT+AGG | 0.394608 | 2.4:+26090244 | None:intergenic |
| GACCGGGCTGAAAAGAAATA+TGG | 0.400591 | 2.4:-26089786 | MS.gene063368:CDS |
| CGACGGCGCCGGCGAGGGAT+AGG | 0.405615 | 2.4:+26091738 | None:intergenic |
| CCTCGCCGGCGCCGTCGCTC+CGG | 0.413496 | 2.4:-26091732 | MS.gene063368:CDS |
| ATGACTTACCGAAGTCCAAC+AGG | 0.413851 | 2.4:+26089724 | None:intergenic |
| GCATCTAGTTGCTGTGGAAC+TGG | 0.415804 | 2.4:-26090046 | MS.gene063368:intron |
| GTCGCTCCGGTCACCTTCTC+CGG | 0.416466 | 2.4:-26091719 | MS.gene063368:CDS |
| AGCCAATGACAACTCTTTCT+CGG | 0.422824 | 2.4:-26091543 | MS.gene063368:intron |
| CACGGTTGCAAGTGAGGTTA+AGG | 0.426301 | 2.4:-26090022 | MS.gene063368:CDS |
| TCCAACAGGGTCCATGAGTT+GGG | 0.438380 | 2.4:+26089738 | None:intergenic |
| TACCGAGAAAGAGTTGTCAT+TGG | 0.438957 | 2.4:+26091541 | None:intergenic |
| AATTATAGAAAGCTCTTTGT+GGG | 0.448717 | 2.4:+26089282 | None:intergenic |
| ATGGTTTGAATTTGAAGAGA+AGG | 0.472298 | 2.4:-26091598 | MS.gene063368:CDS |
| AAACTGGTGAAAACCTTTGT+GGG | 0.475275 | 2.4:+26091659 | None:intergenic |
| CCGGAGCGACGGCGCCGGCG+AGG | 0.481869 | 2.4:+26091732 | None:intergenic |
| CGTCCCCAAATTGATGCTAT+CGG | 0.492807 | 2.4:-26089922 | MS.gene063368:CDS |
| GTCCAACAGGGTCCATGAGT+TGG | 0.493640 | 2.4:+26089737 | None:intergenic |
| TTACAACGCCACAGCATCAA+TGG | 0.495551 | 2.4:-26091617 | MS.gene063368:CDS |
| GTCCCCAAATTGATGCTATC+GGG | 0.500874 | 2.4:-26089921 | MS.gene063368:intron |
| GGTTAAGGCAGGGGATATAA+AGG | 0.507409 | 2.4:-26090007 | MS.gene063368:CDS |
| AAATATGGTAAAATTCCAAA+TGG | 0.510572 | 2.4:-26089771 | MS.gene063368:CDS |
| TAGGCTCCCTCATTGCGAAA+TGG | 0.511514 | 2.4:+26089203 | None:intergenic |
| AAATTATAGAAAGCTCTTTG+TGG | 0.514327 | 2.4:+26089281 | None:intergenic |
| CGGAGCGACGGCGCCGGCGA+GGG | 0.517385 | 2.4:+26091733 | None:intergenic |
| ATGACCCATTTCGCCGGAGA+AGG | 0.518592 | 2.4:+26091706 | None:intergenic |
| ATGAATTATTAAATAACTAT+GGG | 0.519880 | 2.4:-26090332 | MS.gene063368:CDS |
| GAAACTGGTGAAAACCTTTG+TGG | 0.522843 | 2.4:+26091658 | None:intergenic |
| GGTGACCGGAGCGACGGCGC+CGG | 0.532076 | 2.4:+26091727 | None:intergenic |
| ATTTCGCCGGAGAAGGTGAC+CGG | 0.541431 | 2.4:+26091713 | None:intergenic |
| GTTGCAAGTGAGGTTAAGGC+AGG | 0.541952 | 2.4:-26090018 | MS.gene063368:CDS |
| ACCCAACTCATGGACCCTGT+TGG | 0.542471 | 2.4:-26089739 | MS.gene063368:CDS |
| CTCTTCTTCAAAACCCACAA+AGG | 0.543400 | 2.4:-26091672 | MS.gene063368:CDS |
| TTTCGCAATGAGGGAGCCTA+CGG | 0.547079 | 2.4:-26089200 | MS.gene063368:CDS |
| AGTTGCTGTGGAACTGGCCA+CGG | 0.547501 | 2.4:-26090040 | MS.gene063368:CDS |
| GAAGGTCGAGAATTAGAGAC+CGG | 0.554519 | 2.4:-26089803 | MS.gene063368:intron |
| GAGACTCAAAACCCAACTCA+TGG | 0.554759 | 2.4:-26089749 | MS.gene063368:CDS |
| TGCAAGTGAGGTTAAGGCAG+GGG | 0.558585 | 2.4:-26090016 | MS.gene063368:CDS |
| CAACCACCATTTCGCAATGA+GGG | 0.563409 | 2.4:-26089209 | MS.gene063368:CDS |
| ACTGGCCACGGTTGCAAGTG+AGG | 0.566137 | 2.4:-26090028 | MS.gene063368:CDS |
| AATTCAAACCATTGATGCTG+TGG | 0.573736 | 2.4:+26091609 | None:intergenic |
| TTGATGCTGTGGCGTTGTAA+AGG | 0.575062 | 2.4:+26091620 | None:intergenic |
| TCATGGACCCTGTTGGACTT+CGG | 0.575861 | 2.4:-26089732 | MS.gene063368:intron |
| TTGGGGATGACCCATTTCGC+CGG | 0.581448 | 2.4:+26091700 | None:intergenic |
| GGAGAAGGTGACCGGAGCGA+CGG | 0.582053 | 2.4:+26091721 | None:intergenic |
| CTTAACCTCACTTGCAACCG+TGG | 0.590346 | 2.4:+26090023 | None:intergenic |
| AATCGAGTCCAGTAAACAAG+TGG | 0.595838 | 2.4:+26089970 | None:intergenic |
| GCTCCCTCATTGCGAAATGG+TGG | 0.600231 | 2.4:+26089206 | None:intergenic |
| TCAACCACCATTTCGCAATG+AGG | 0.606311 | 2.4:-26089210 | MS.gene063368:CDS |
| TTTGAAGAAGAGTTGGTTTG+GGG | 0.609746 | 2.4:+26091683 | None:intergenic |
| TTATAGAAAGCTCTTTGTGG+GGG | 0.611682 | 2.4:+26089284 | None:intergenic |
| TTGCAAGTGAGGTTAAGGCA+GGG | 0.616058 | 2.4:-26090017 | MS.gene063368:CDS |
| TCAACTCTCCTATCCCTCGC+CGG | 0.619293 | 2.4:-26091746 | MS.gene063368:CDS |
| TGTTGTGCATCTAGTTGCTG+TGG | 0.619390 | 2.4:-26090052 | MS.gene063368:intron |
| ATTATAGAAAGCTCTTTGTG+GGG | 0.619735 | 2.4:+26089283 | None:intergenic |
| TACCCGATAGCATCAATTTG+GGG | 0.655032 | 2.4:+26089919 | None:intergenic |
| AAGGTCGAGAATTAGAGACC+GGG | 0.675691 | 2.4:-26089802 | MS.gene063368:CDS |
| TGCATCATCTGAGAAACCGT+AGG | 0.677693 | 2.4:+26089184 | None:intergenic |
| AGGGATAGGAGAGTTGAAGA+CGG | 0.682989 | 2.4:+26091752 | None:intergenic |
| TGACTTACCGAAGTCCAACA+GGG | 0.707635 | 2.4:+26089725 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAATTATTAAATAACTAT+GGG | - | chr2.4:26090601-26090620 | MS.gene063368:intron | 10.0% |
| !! | TTTAATGTTTATACATTATT+TGG | - | chr2.4:26089894-26089913 | MS.gene063368:intron | 10.0% |
| !! | AAAATATGAATACATAACAA+TGG | + | chr2.4:26089806-26089825 | None:intergenic | 15.0% |
| !! | ATGAATTTATATAATCACAA+TGG | - | chr2.4:26090440-26090459 | MS.gene063368:intron | 15.0% |
| !! | GATGAATTATTAAATAACTA+TGG | - | chr2.4:26090600-26090619 | MS.gene063368:intron | 15.0% |
| !! | TTTAATCCTATTTATATTGA+AGG | - | chr2.4:26091112-26091131 | MS.gene063368:intron | 15.0% |
| !!! | TTACTTTAAGTTATTATTAC+CGG | - | chr2.4:26089673-26089692 | MS.gene063368:intron | 15.0% |
| !! | AAAGTAATTGAATATAACCA+AGG | + | chr2.4:26089660-26089679 | None:intergenic | 20.0% |
| !! | AAATATGGTAAAATTCCAAA+TGG | - | chr2.4:26091162-26091181 | MS.gene063368:intron | 20.0% |
| !! | AATATATAAAGATCAATGAC+AGG | + | chr2.4:26091045-26091064 | None:intergenic | 20.0% |
| !! | TAAAAGAAAAACAACTACAT+AGG | + | chr2.4:26089777-26089796 | None:intergenic | 20.0% |
| !! | TAAGAATCAACATTAAACAA+AGG | + | chr2.4:26090332-26090351 | None:intergenic | 20.0% |
| !! | TGTAAAAAGAAATGTAAACA+AGG | + | chr2.4:26090739-26090758 | None:intergenic | 20.0% |
| !!! | TAACAAACTGTATAATTTTC+AGG | - | chr2.4:26090548-26090567 | MS.gene063368:intron | 20.0% |
| !!! | TATAATTTGGAAGAGTTTTA+TGG | - | chr2.4:26091667-26091686 | MS.gene063368:CDS | 20.0% |
| !!! | TTTATGTTGATTGATTTAGA+AGG | + | chr2.4:26091440-26091459 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTCTTTGCTCAA+AGG | - | chr2.4:26091082-26091101 | MS.gene063368:intron | 20.0% |
| ! | AAATTATAGAAAGCTCTTTG+TGG | + | chr2.4:26091655-26091674 | None:intergenic | 25.0% |
| ! | AATTATAGAAAGCTCTTTGT+GGG | + | chr2.4:26091654-26091673 | None:intergenic | 25.0% |
| ! | ACAAAGAGCTTTCTATAATT+TGG | - | chr2.4:26091654-26091673 | MS.gene063368:CDS | 25.0% |
| ! | AGATAAGAGTTTATAAAGAG+AGG | - | chr2.4:26090109-26090128 | MS.gene063368:intron | 25.0% |
| ! | ATAAAATGCAGACAATTAGA+GGG | + | chr2.4:26091252-26091271 | None:intergenic | 25.0% |
| ! | CAAATACTCTATAAGATTGA+AGG | - | chr2.4:26089572-26089591 | MS.gene063368:intron | 25.0% |
| ! | CTTCTGATTATGTCAAATAT+AGG | + | chr2.4:26091488-26091507 | None:intergenic | 25.0% |
| ! | GACTAAAACAAATACGTAAT+AGG | + | chr2.4:26090399-26090418 | None:intergenic | 25.0% |
| ! | GATTCAGAATAAGATGTTTA+AGG | - | chr2.4:26089840-26089859 | MS.gene063368:intron | 25.0% |
| ! | GTAAAATGTTAACTGAGATA+AGG | - | chr2.4:26089946-26089965 | MS.gene063368:CDS | 25.0% |
| ! | TATAAAATGCAGACAATTAG+AGG | + | chr2.4:26091253-26091272 | None:intergenic | 25.0% |
| !! | AATGAGTTCAGTTTAGATTT+TGG | - | chr2.4:26089467-26089486 | MS.gene063368:intron | 25.0% |
| !! | ATGAGTTCAGTTTAGATTTT+GGG | - | chr2.4:26089468-26089487 | MS.gene063368:intron | 25.0% |
| !! | TTATGTCAAATATAGGCTTT+TGG | + | chr2.4:26091481-26091500 | None:intergenic | 25.0% |
| !!! | AGTTTTGGTAGTTAAAATTC+AGG | + | chr2.4:26090359-26090378 | None:intergenic | 25.0% |
| !!! | TGATTTAGAAGGTTTTGATA+GGG | + | chr2.4:26091429-26091448 | None:intergenic | 25.0% |
| !!! | TTGATTTAGAAGGTTTTGAT+AGG | + | chr2.4:26091430-26091449 | None:intergenic | 25.0% |
| AAACAATCATAAGATGAACC+TGG | + | chr2.4:26091592-26091611 | None:intergenic | 30.0% | |
| AAATAACCGAACCATAGTAA+AGG | + | chr2.4:26089988-26090007 | None:intergenic | 30.0% | |
| AATGTTAACTGAGATAAGGT+TGG | - | chr2.4:26089950-26089969 | MS.gene063368:CDS | 30.0% | |
| ACATGTATGTGTCTTATATC+AGG | - | chr2.4:26090771-26090790 | MS.gene063368:intron | 30.0% | |
| ATGCAATTTAGAAAACCTTG+AGG | - | chr2.4:26089546-26089565 | MS.gene063368:intron | 30.0% | |
| ATGGTTTGAATTTGAAGAGA+AGG | - | chr2.4:26089335-26089354 | MS.gene063368:intron | 30.0% | |
| ATTATAGAAAGCTCTTTGTG+GGG | + | chr2.4:26091653-26091672 | None:intergenic | 30.0% | |
| TAACACCTAAACATAAACAC+CGG | + | chr2.4:26089695-26089714 | None:intergenic | 30.0% | |
| TACCAAACAAGATACATGAT+AGG | + | chr2.4:26091544-26091563 | None:intergenic | 30.0% | |
| TATTACCGGTGTTTATGTTT+AGG | - | chr2.4:26089687-26089706 | MS.gene063368:intron | 30.0% | |
| TATTGCAACATGAATTGCAT+CGG | - | chr2.4:26091510-26091529 | MS.gene063368:intron | 30.0% | |
| TCTCGACCTTCAATATAAAT+AGG | + | chr2.4:26091121-26091140 | None:intergenic | 30.0% | |
| TGATTGGCAATTCTCATTAA+GGG | - | chr2.4:26090517-26090536 | MS.gene063368:intron | 30.0% | |
| TTAACTACCAAAACTGAGAA+TGG | - | chr2.4:26090364-26090383 | MS.gene063368:CDS | 30.0% | |
| TTAATGAGAATTGCCAATCA+CGG | + | chr2.4:26090517-26090536 | None:intergenic | 30.0% | |
| TTAGGTGTTAATGTTGTGTT+CGG | - | chr2.4:26089705-26089724 | MS.gene063368:intron | 30.0% | |
| TTGTTATCAGCTTACATGAT+AGG | + | chr2.4:26090692-26090711 | None:intergenic | 30.0% | |
| TTTCACCAGTTTCTACAAAA+AGG | - | chr2.4:26089285-26089304 | MS.gene063368:CDS | 30.0% | |
| ! | ACAATTTCTAGACACTAAAG+AGG | + | chr2.4:26090284-26090303 | None:intergenic | 30.0% |
| ! | ACTCTTTTGAACTTTGCTTT+GGG | - | chr2.4:26089361-26089380 | MS.gene063368:intron | 30.0% |
| ! | ATAGTCCTATCTTTTAAACG+TGG | + | chr2.4:26090089-26090108 | None:intergenic | 30.0% |
| ! | TAGTCCTATCTTTTAAACGT+GGG | + | chr2.4:26090088-26090107 | None:intergenic | 30.0% |
| ! | TATGATTGTTTCTTGATCAC+AGG | - | chr2.4:26091601-26091620 | MS.gene063368:CDS | 30.0% |
| ! | TATTTGGATGTTGACTATAG+AGG | - | chr2.4:26089910-26089929 | MS.gene063368:intron | 30.0% |
| !! | AATGGTGGTTGATTTTCAAA+AGG | + | chr2.4:26091715-26091734 | None:intergenic | 30.0% |
| !! | GTTTTATGGTAATGCAACAT+CGG | - | chr2.4:26091681-26091700 | MS.gene063368:CDS | 30.0% |
| !! | TACTTTAAAGCGCTCAAATT+GGG | + | chr2.4:26090034-26090053 | None:intergenic | 30.0% |
| !! | TTTTGAAGAAGAGTTGGTTT+GGG | + | chr2.4:26089254-26089273 | None:intergenic | 30.0% |
| !!! | AGTTTAGATTTTGGGTTCTA+TGG | - | chr2.4:26089476-26089495 | MS.gene063368:intron | 30.0% |
| !!! | GGGTTTGGTTTTTAAAACAT+TGG | - | chr2.4:26090220-26090239 | MS.gene063368:intron | 30.0% |
| !!! | TTACTATGGTTCGGTTATTT+TGG | - | chr2.4:26089988-26090007 | MS.gene063368:CDS | 30.0% |
| AAACTGGTGAAAACCTTTGT+GGG | + | chr2.4:26089277-26089296 | None:intergenic | 35.0% | |
| AAGAGGTTAGAATCATGTTG+AGG | + | chr2.4:26091403-26091422 | None:intergenic | 35.0% | |
| AAGTCCCACGTTTAAAAGAT+AGG | - | chr2.4:26090081-26090100 | MS.gene063368:intron | 35.0% | |
| AATTCAAACCATTGATGCTG+TGG | + | chr2.4:26089327-26089346 | None:intergenic | 35.0% | |
| ATAATCAGAAGCAAAGATGC+AGG | - | chr2.4:26091374-26091393 | MS.gene063368:intron | 35.0% | |
| ATACCCGATAGCATCAATTT+GGG | + | chr2.4:26091018-26091037 | None:intergenic | 35.0% | |
| GTCCTATCATGTATCTTGTT+TGG | - | chr2.4:26091539-26091558 | MS.gene063368:intron | 35.0% | |
| GTGATTGGCAATTCTCATTA+AGG | - | chr2.4:26090516-26090535 | MS.gene063368:intron | 35.0% | |
| TCAGACTGTATTCAGAAACA+CGG | + | chr2.4:26091568-26091587 | None:intergenic | 35.0% | |
| TCTAGAAGTTATGTCTTTGC+TGG | + | chr2.4:26091326-26091345 | None:intergenic | 35.0% | |
| TTATAGAAAGCTCTTTGTGG+GGG | + | chr2.4:26091652-26091671 | None:intergenic | 35.0% | |
| TTTGTGGGGGAAGAAATAAA+TGG | + | chr2.4:26091639-26091658 | None:intergenic | 35.0% | |
| ! | ATAGAGTATTTGTCTCCTCA+AGG | + | chr2.4:26089564-26089583 | None:intergenic | 35.0% |
| ! | ATCTTTTAAACGTGGGACTT+GGG | + | chr2.4:26090081-26090100 | None:intergenic | 35.0% |
| ! | CACTCTTTTGAACTTTGCTT+TGG | - | chr2.4:26089360-26089379 | MS.gene063368:intron | 35.0% |
| ! | CTAGATTCCATTCTCAGTTT+TGG | + | chr2.4:26090374-26090393 | None:intergenic | 35.0% |
| ! | TACCATATTTCTTTTCAGCC+CGG | + | chr2.4:26091152-26091171 | None:intergenic | 35.0% |
| ! | TATCTTTTAAACGTGGGACT+TGG | + | chr2.4:26090082-26090101 | None:intergenic | 35.0% |
| !! | CTACTTTAAAGCGCTCAAAT+TGG | + | chr2.4:26090035-26090054 | None:intergenic | 35.0% |
| !! | TTTGAAGAAGAGTTGGTTTG+GGG | + | chr2.4:26089253-26089272 | None:intergenic | 35.0% |
| !!! | CAAATATAGGCTTTTGGAAC+TGG | + | chr2.4:26091475-26091494 | None:intergenic | 35.0% |
| !!! | GTTTTGAAGAAGAGTTGGTT+TGG | + | chr2.4:26089255-26089274 | None:intergenic | 35.0% |
| !!! | TATTTTGGCAGTTTGATCAG+TGG | - | chr2.4:26090003-26090022 | MS.gene063368:CDS | 35.0% |
| AAGGGGAAAAAGTTGTGGTT+TGG | + | chr2.4:26090256-26090275 | None:intergenic | 40.0% | |
| AATCGAGTCCAGTAAACAAG+TGG | + | chr2.4:26090966-26090985 | None:intergenic | 40.0% | |
| ACACTAAAGAGGAGATGAAG+GGG | + | chr2.4:26090273-26090292 | None:intergenic | 40.0% | |
| AGACACTAAAGAGGAGATGA+AGG | + | chr2.4:26090275-26090294 | None:intergenic | 40.0% | |
| AGATGAAGGGGAAAAAGTTG+TGG | + | chr2.4:26090261-26090280 | None:intergenic | 40.0% | |
| AGCCAATGACAACTCTTTCT+CGG | - | chr2.4:26089390-26089409 | MS.gene063368:intron | 40.0% | |
| AGGGGAAAAAGTTGTGGTTT+GGG | + | chr2.4:26090255-26090274 | None:intergenic | 40.0% | |
| AGTGCAATGGGAAACTTCAA+TGG | + | chr2.4:26091284-26091303 | None:intergenic | 40.0% | |
| CAAATTGATGCTATCGGGTA+TGG | - | chr2.4:26091017-26091036 | MS.gene063368:intron | 40.0% | |
| CATACCCGATAGCATCAATT+TGG | + | chr2.4:26091019-26091038 | None:intergenic | 40.0% | |
| CCTTACAAAACCAGCTTGTA+AGG | + | chr2.4:26090144-26090163 | None:intergenic | 40.0% | |
| CTCTTCTTCAAAACCCACAA+AGG | - | chr2.4:26089261-26089280 | MS.gene063368:CDS | 40.0% | |
| GAAACTGGTGAAAACCTTTG+TGG | + | chr2.4:26089278-26089297 | None:intergenic | 40.0% | |
| GACACTAAAGAGGAGATGAA+GGG | + | chr2.4:26090274-26090293 | None:intergenic | 40.0% | |
| TACCCGATAGCATCAATTTG+GGG | + | chr2.4:26091017-26091036 | None:intergenic | 40.0% | |
| TACCGAGAAAGAGTTGTCAT+TGG | + | chr2.4:26089395-26089414 | None:intergenic | 40.0% | |
| TGACATTGACACTGATACCT+TGG | - | chr2.4:26089640-26089659 | MS.gene063368:intron | 40.0% | |
| TGGAGCGTAACGTTGAAATT+GGG | + | chr2.4:26090178-26090197 | None:intergenic | 40.0% | |
| TTCTGAATACAGTCTGATCC+AGG | - | chr2.4:26091571-26091590 | MS.gene063368:CDS | 40.0% | |
| TTGTGAAGCCACTTGTTTAC+TGG | - | chr2.4:26090955-26090974 | MS.gene063368:intron | 40.0% | |
| ! | ATGCGCCTTTTTGTAGAAAC+TGG | + | chr2.4:26089293-26089312 | None:intergenic | 40.0% |
| !! | AGGTTTTGATAGGGACAAAG+AGG | + | chr2.4:26091420-26091439 | None:intergenic | 40.0% |
| !!! | CCTTACAAGCTGGTTTTGTA+AGG | - | chr2.4:26090141-26090160 | MS.gene063368:intron | 40.0% |
| !!! | TGTGGGTTTTGAAGAAGAGT+TGG | + | chr2.4:26089260-26089279 | None:intergenic | 40.0% |
| !!! | TTGGGTTTTGAGTCTCCATT+TGG | + | chr2.4:26091180-26091199 | None:intergenic | 40.0% |
| AAGGTCGAGAATTAGAGACC+GGG | - | chr2.4:26091131-26091150 | MS.gene063368:intron | 45.0% | |
| ACCATAGTAAAGGCCACGAT+CGG | + | chr2.4:26089978-26089997 | None:intergenic | 45.0% | |
| AGGGATAGGAGAGTTGAAGA+CGG | + | chr2.4:26089184-26089203 | None:intergenic | 45.0% | |
| AGTGCTTCATAGTTCACAGG+AGG | - | chr2.4:26089742-26089761 | MS.gene063368:CDS | 45.0% | |
| ATCTCTCACTGGTGTGTTGT+CGG | - | chr2.4:26090199-26090218 | MS.gene063368:intron | 45.0% | |
| ATGACTTACCGAAGTCCAAC+AGG | + | chr2.4:26091212-26091231 | None:intergenic | 45.0% | |
| CAAAACCAGCTTGTAAGGTG+TGG | + | chr2.4:26090139-26090158 | None:intergenic | 45.0% | |
| CAACCACCATTTCGCAATGA+GGG | - | chr2.4:26091724-26091743 | MS.gene063368:CDS | 45.0% | |
| CGTCCCCAAATTGATGCTAT+CGG | - | chr2.4:26091011-26091030 | MS.gene063368:intron | 45.0% | |
| CTGGAGCGTAACGTTGAAAT+TGG | + | chr2.4:26090179-26090198 | None:intergenic | 45.0% | |
| GAAGGTCGAGAATTAGAGAC+CGG | - | chr2.4:26091130-26091149 | MS.gene063368:intron | 45.0% | |
| GACCGGGCTGAAAAGAAATA+TGG | - | chr2.4:26091147-26091166 | MS.gene063368:intron | 45.0% | |
| GAGACTCAAAACCCAACTCA+TGG | - | chr2.4:26091184-26091203 | MS.gene063368:intron | 45.0% | |
| GCTAGTGCTTCATAGTTCAC+AGG | - | chr2.4:26089739-26089758 | MS.gene063368:CDS | 45.0% | |
| GGTTAAGGCAGGGGATATAA+AGG | - | chr2.4:26090926-26090945 | MS.gene063368:intron | 45.0% | |
| GTCCCCAAATTGATGCTATC+GGG | - | chr2.4:26091012-26091031 | MS.gene063368:intron | 45.0% | |
| TCAACCACCATTTCGCAATG+AGG | - | chr2.4:26091723-26091742 | MS.gene063368:CDS | 45.0% | |
| TCGTGGCCTTTACTATGGTT+CGG | - | chr2.4:26089979-26089998 | MS.gene063368:CDS | 45.0% | |
| TGACTTACCGAAGTCCAACA+GGG | + | chr2.4:26091211-26091230 | None:intergenic | 45.0% | |
| TGCATCATCTGAGAAACCGT+AGG | + | chr2.4:26091752-26091771 | None:intergenic | 45.0% | |
| TGTTGTGCATCTAGTTGCTG+TGG | - | chr2.4:26090881-26090900 | MS.gene063368:intron | 45.0% | |
| TTACAACGCCACAGCATCAA+TGG | - | chr2.4:26089316-26089335 | MS.gene063368:intron | 45.0% | |
| TTGATGCTGTGGCGTTGTAA+AGG | + | chr2.4:26089316-26089335 | None:intergenic | 45.0% | |
| TTGCAAGTGAGGTTAAGGCA+GGG | - | chr2.4:26090916-26090935 | MS.gene063368:intron | 45.0% | |
| ! | GCCTCTTCTAGAAGTGCAAT+GGG | + | chr2.4:26091296-26091315 | None:intergenic | 45.0% |
| ! | TCCCATTGCACTTCTAGAAG+AGG | - | chr2.4:26091292-26091311 | MS.gene063368:intron | 45.0% |
| ! | TGCCTCTTCTAGAAGTGCAA+TGG | + | chr2.4:26091297-26091316 | None:intergenic | 45.0% |
| !!! | ACGTGGGACTTGGGTTTTTT+CGG | + | chr2.4:26090072-26090091 | None:intergenic | 45.0% |
| ATTGCCAATCACGGAACGTG+TGG | + | chr2.4:26090508-26090527 | None:intergenic | 50.0% | |
| CAACACACCAGTGAGAGATC+TGG | + | chr2.4:26090198-26090217 | None:intergenic | 50.0% | |
| CACGGTTGCAAGTGAGGTTA+AGG | - | chr2.4:26090911-26090930 | MS.gene063368:intron | 50.0% | |
| CTTAACCTCACTTGCAACCG+TGG | + | chr2.4:26090913-26090932 | None:intergenic | 50.0% | |
| GCATCTAGTTGCTGTGGAAC+TGG | - | chr2.4:26090887-26090906 | MS.gene063368:intron | 50.0% | |
| GCATTCCACACCTTACAAGC+TGG | - | chr2.4:26090131-26090150 | MS.gene063368:intron | 50.0% | |
| GTTGCAAGTGAGGTTAAGGC+AGG | - | chr2.4:26090915-26090934 | MS.gene063368:intron | 50.0% | |
| TAGGCTCCCTCATTGCGAAA+TGG | + | chr2.4:26091733-26091752 | None:intergenic | 50.0% | |
| TCATGGACCCTGTTGGACTT+CGG | - | chr2.4:26091201-26091220 | MS.gene063368:intron | 50.0% | |
| TCCAACAGGGTCCATGAGTT+GGG | + | chr2.4:26091198-26091217 | None:intergenic | 50.0% | |
| TCCGATCGTGGCCTTTACTA+TGG | - | chr2.4:26089974-26089993 | MS.gene063368:CDS | 50.0% | |
| TCGTCAATCTCTGCACTTGC+AGG | + | chr2.4:26090657-26090676 | None:intergenic | 50.0% | |
| TCTCTCACTGGTGTGTTGTC+GGG | - | chr2.4:26090200-26090219 | MS.gene063368:intron | 50.0% | |
| TGCAAGTGAGGTTAAGGCAG+GGG | - | chr2.4:26090917-26090936 | MS.gene063368:intron | 50.0% | |
| TTACGCTCCAGATCTCTCAC+TGG | - | chr2.4:26090188-26090207 | MS.gene063368:intron | 50.0% | |
| TTTCGCAATGAGGGAGCCTA+CGG | - | chr2.4:26091733-26091752 | MS.gene063368:CDS | 50.0% | |
| ! | GATAAGGTTGGTTCCGATCG+TGG | - | chr2.4:26089962-26089981 | MS.gene063368:CDS | 50.0% |
| ! | TCTCTGCACTTGCAGGCTTT+TGG | + | chr2.4:26090650-26090669 | None:intergenic | 50.0% |
| !!! | CGTGGGACTTGGGTTTTTTC+GGG | + | chr2.4:26090071-26090090 | None:intergenic | 50.0% |
| ACCCAACTCATGGACCCTGT+TGG | - | chr2.4:26091194-26091213 | MS.gene063368:intron | 55.0% | |
| AGTTGCTGTGGAACTGGCCA+CGG | - | chr2.4:26090893-26090912 | MS.gene063368:intron | 55.0% | |
| ATGACCCATTTCGCCGGAGA+AGG | + | chr2.4:26089230-26089249 | None:intergenic | 55.0% | |
| ATTTCGCCGGAGAAGGTGAC+CGG | + | chr2.4:26089223-26089242 | None:intergenic | 55.0% | |
| CACTGGTGTGTTGTCGGGTT+TGG | - | chr2.4:26090205-26090224 | MS.gene063368:intron | 55.0% | |
| CGTGTGGCAGGTAGAAAAGC+AGG | + | chr2.4:26090492-26090511 | None:intergenic | 55.0% | |
| GCTCCCTCATTGCGAAATGG+TGG | + | chr2.4:26091730-26091749 | None:intergenic | 55.0% | |
| GTCACCTTCTCCGGCGAAAT+GGG | - | chr2.4:26089223-26089242 | MS.gene063368:CDS | 55.0% | |
| GTCCAACAGGGTCCATGAGT+TGG | + | chr2.4:26091199-26091218 | None:intergenic | 55.0% | |
| TCAACTCTCCTATCCCTCGC+CGG | - | chr2.4:26089187-26089206 | MS.gene063368:CDS | 55.0% | |
| TTGGGGATGACCCATTTCGC+CGG | + | chr2.4:26089236-26089255 | None:intergenic | 55.0% | |
| ACTGGCCACGGTTGCAAGTG+AGG | - | chr2.4:26090905-26090924 | MS.gene063368:intron | 60.0% | |
| CCAATCACGGAACGTGTGGC+AGG | + | chr2.4:26090504-26090523 | None:intergenic | 60.0% | |
| CCTGCCACACGTTCCGTGAT+TGG | - | chr2.4:26090501-26090520 | MS.gene063368:intron | 60.0% | |
| GGTCACCTTCTCCGGCGAAA+TGG | - | chr2.4:26089222-26089241 | MS.gene063368:CDS | 60.0% | |
| GGAGAAGGTGACCGGAGCGA+CGG | + | chr2.4:26089215-26089234 | None:intergenic | 65.0% | |
| GTCGCTCCGGTCACCTTCTC+CGG | - | chr2.4:26089214-26089233 | MS.gene063368:CDS | 65.0% | |
| ! | GGTGACCGGAGCGACGGCGC+CGG | + | chr2.4:26089209-26089228 | None:intergenic | 80.0% |
| !!! | CGACGGCGCCGGCGAGGGAT+AGG | + | chr2.4:26089198-26089217 | None:intergenic | 80.0% |
| ! | CCTCGCCGGCGCCGTCGCTC+CGG | - | chr2.4:26089201-26089220 | MS.gene063368:CDS | 85.0% |
| !!! | CGGAGCGACGGCGCCGGCGA+GGG | + | chr2.4:26089203-26089222 | None:intergenic | 85.0% |
| !!! | CCGGAGCGACGGCGCCGGCG+AGG | + | chr2.4:26089204-26089223 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 26089175 | 26091780 | 26089175 | ID=MS.gene063368 |
| chr2.4 | mRNA | 26089175 | 26091780 | 26089175 | ID=MS.gene063368.t1;Parent=MS.gene063368 |
| chr2.4 | exon | 26091544 | 26091780 | 26091544 | ID=MS.gene063368.t1.exon1;Parent=MS.gene063368.t1 |
| chr2.4 | CDS | 26091544 | 26091780 | 26091544 | ID=cds.MS.gene063368.t1;Parent=MS.gene063368.t1 |
| chr2.4 | exon | 26090259 | 26090385 | 26090259 | ID=MS.gene063368.t1.exon2;Parent=MS.gene063368.t1 |
| chr2.4 | CDS | 26090259 | 26090385 | 26090259 | ID=cds.MS.gene063368.t1;Parent=MS.gene063368.t1 |
| chr2.4 | exon | 26089922 | 26090060 | 26089922 | ID=MS.gene063368.t1.exon3;Parent=MS.gene063368.t1 |
| chr2.4 | CDS | 26089922 | 26090060 | 26089922 | ID=cds.MS.gene063368.t1;Parent=MS.gene063368.t1 |
| chr2.4 | exon | 26089733 | 26089821 | 26089733 | ID=MS.gene063368.t1.exon4;Parent=MS.gene063368.t1 |
| chr2.4 | CDS | 26089733 | 26089821 | 26089733 | ID=cds.MS.gene063368.t1;Parent=MS.gene063368.t1 |
| chr2.4 | exon | 26089175 | 26089332 | 26089175 | ID=MS.gene063368.t1.exon5;Parent=MS.gene063368.t1 |
| chr2.4 | CDS | 26089175 | 26089332 | 26089175 | ID=cds.MS.gene063368.t1;Parent=MS.gene063368.t1 |
| Gene Sequence |
| Protein sequence |
