Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064807.t1 | XP_003603845.1 | 87 | 423 | 55 | 0 | 1 | 423 | 1 | 423 | 5.00E-215 | 756.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064807.t1 | P50134 | 57.9 | 413 | 173 | 1 | 11 | 423 | 19 | 430 | 5.8e-135 | 482.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064807.t1 | G7J5X8 | 87.0 | 423 | 55 | 0 | 1 | 423 | 1 | 423 | 3.6e-215 | 756.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04925 | MS.gene064807 | 0.804399 | 2.20E-49 | -1.69E-46 |
| MS.gene049549 | MS.gene064807 | 0.843043 | 1.79E-58 | -1.69E-46 |
| MS.gene050133 | MS.gene064807 | 0.814291 | 1.66E-51 | -1.69E-46 |
| MS.gene051131 | MS.gene064807 | 0.814356 | 1.61E-51 | -1.69E-46 |
| MS.gene051996 | MS.gene064807 | 0.810405 | 1.17E-50 | -1.69E-46 |
| MS.gene052211 | MS.gene064807 | 0.810869 | 9.30E-51 | -1.69E-46 |
| MS.gene05240 | MS.gene064807 | 0.824619 | 7.32E-54 | -1.69E-46 |
| MS.gene052705 | MS.gene064807 | 0.815618 | 8.43E-52 | -1.69E-46 |
| MS.gene054146 | MS.gene064807 | 0.808542 | 2.94E-50 | -1.69E-46 |
| MS.gene054277 | MS.gene064807 | 0.857215 | 1.90E-62 | -1.69E-46 |
| MS.gene054742 | MS.gene064807 | 0.844907 | 5.65E-59 | -1.69E-46 |
| MS.gene055240 | MS.gene064807 | 0.852968 | 3.26E-61 | -1.69E-46 |
| MS.gene056748 | MS.gene064807 | 0.829555 | 4.82E-55 | -1.69E-46 |
| MS.gene056920 | MS.gene064807 | 0.841952 | 3.48E-58 | -1.69E-46 |
| MS.gene056922 | MS.gene064807 | 0.831907 | 1.28E-55 | -1.69E-46 |
| MS.gene056923 | MS.gene064807 | 0.807358 | 5.26E-50 | -1.69E-46 |
| MS.gene057820 | MS.gene064807 | 0.815702 | 8.07E-52 | -1.69E-46 |
| MS.gene059891 | MS.gene064807 | 0.800455 | 1.43E-48 | -1.69E-46 |
| MS.gene059892 | MS.gene064807 | 0.811208 | 7.85E-51 | -1.69E-46 |
| MS.gene060087 | MS.gene064807 | 0.838881 | 2.21E-57 | -1.69E-46 |
| MS.gene061038 | MS.gene064807 | 0.815088 | 1.11E-51 | -1.69E-46 |
| MS.gene061092 | MS.gene064807 | 0.82785 | 1.25E-54 | -1.69E-46 |
| MS.gene061094 | MS.gene064807 | 0.828779 | 7.43E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064807.t1 | MTR_3g114870 | 86.998 | 423 | 55 | 0 | 1 | 423 | 1 | 423 | 0.0 | 768 |
| MS.gene064807.t1 | MTR_3g114890 | 81.527 | 406 | 49 | 3 | 22 | 427 | 54 | 433 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 94 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGCAGCTTCATCAAATT+TGG | 0.134844 | 3.4:+98338620 | None:intergenic |
| TGGGCTTCAGGTTGGCAATT+TGG | 0.174820 | 3.4:+98339372 | None:intergenic |
| TTGGCTTGTGTTTCCAAATA+TGG | 0.194285 | 3.4:-98338241 | MS.gene064807:CDS |
| CATTTAGCGTCCTTGATTTA+AGG | 0.195088 | 3.4:-98339235 | MS.gene064807:CDS |
| AACTTCTTTAGCTGATAATA+TGG | 0.239934 | 3.4:+98338716 | None:intergenic |
| GTTGTATATGCACCCATATT+TGG | 0.244783 | 3.4:+98338228 | None:intergenic |
| CGGAGGAGGAGCTCACATTT+TGG | 0.255015 | 3.4:+98338912 | None:intergenic |
| GGGCTTCAGGTTGGCAATTT+GGG | 0.261179 | 3.4:+98339373 | None:intergenic |
| GACAAGGATCTTGTTGTTAT+TGG | 0.275664 | 3.4:-98338561 | MS.gene064807:CDS |
| AAAATGAAAATTCTTGATAT+TGG | 0.275753 | 3.4:-98338663 | MS.gene064807:CDS |
| GGAGCAAAACCCATTGAAAT+TGG | 0.277439 | 3.4:+98338194 | None:intergenic |
| TTACACTTAACAGCGTAAAA+AGG | 0.288780 | 3.4:+98339161 | None:intergenic |
| ATTGGTGGTGGATTCACTTC+TGG | 0.295664 | 3.4:-98338645 | MS.gene064807:CDS |
| CTTAAATCAAGGACGCTAAA+TGG | 0.304128 | 3.4:+98339236 | None:intergenic |
| GGTGCATATACAACTTCTTC+TGG | 0.309142 | 3.4:-98338219 | MS.gene064807:CDS |
| GCGGCTGGCGCAGTCGAAAT+TGG | 0.315367 | 3.4:+98339097 | None:intergenic |
| TGGATCAATGATGGAATTTA+CGG | 0.338014 | 3.4:-98338450 | MS.gene064807:CDS |
| GGATAAAACGGATTCAATTT+CGG | 0.338625 | 3.4:+98339073 | None:intergenic |
| TAACTACCTTTGACTCTGTT+GGG | 0.347714 | 3.4:-98338962 | MS.gene064807:CDS |
| GCATCTTTGAGTGTCAAATA+TGG | 0.350668 | 3.4:-98338858 | MS.gene064807:CDS |
| ATTTAGCGTCCTTGATTTAA+GGG | 0.350890 | 3.4:-98339234 | MS.gene064807:CDS |
| CAATCGTTCACCTCAAGTTC+AGG | 0.366769 | 3.4:+98338261 | None:intergenic |
| AATCCAAACATTTCACTTGT+AGG | 0.370462 | 3.4:-98339140 | MS.gene064807:CDS |
| TCTTCTGGAACCAATTTCAA+TGG | 0.383904 | 3.4:-98338204 | MS.gene064807:CDS |
| ACATGCACCCCACTTAGGTT+TGG | 0.403271 | 3.4:-98338390 | MS.gene064807:CDS |
| ATCAGCAGCTTTGAGAAGCT+TGG | 0.407701 | 3.4:+98338815 | None:intergenic |
| AATTTGGGATAGGGATTCTT+CGG | 0.416647 | 3.4:+98339388 | None:intergenic |
| CTTGTTGTTATTGGTGAACC+TGG | 0.425304 | 3.4:-98338552 | MS.gene064807:CDS |
| GGATTCAATTTCGGTGCGGC+TGG | 0.426884 | 3.4:+98339082 | None:intergenic |
| GTGGCGGGACTTAAAGTAAC+TGG | 0.439278 | 3.4:-98338792 | MS.gene064807:CDS |
| CTTCTGGAACCAATTTCAAT+GGG | 0.439459 | 3.4:-98338203 | MS.gene064807:CDS |
| ATAATTTATTCTTGCCCGAC+AGG | 0.443813 | 3.4:+98338138 | None:intergenic |
| TCAGGTTGGCAATTTGGGAT+AGG | 0.448215 | 3.4:+98339378 | None:intergenic |
| TTAACTACCTTTGACTCTGT+TGG | 0.451047 | 3.4:-98338963 | MS.gene064807:CDS |
| CAGGTTGGCAATTTGGGATA+GGG | 0.452166 | 3.4:+98339379 | None:intergenic |
| GTGCCTACAAGTGAAATGTT+TGG | 0.453016 | 3.4:+98339137 | None:intergenic |
| TGGCTTGTGTTTCCAAATAT+GGG | 0.454466 | 3.4:-98338240 | MS.gene064807:CDS |
| TAATTGATCTTATGAACAAA+TGG | 0.458554 | 3.4:-98339208 | MS.gene064807:CDS |
| TCAGCAGCTTTGAGAAGCTT+GGG | 0.462319 | 3.4:+98338816 | None:intergenic |
| CTCTTTGAGAACCGTATCAA+TGG | 0.466778 | 3.4:+98338293 | None:intergenic |
| AAAATTCTTGATATTGGTGG+TGG | 0.474122 | 3.4:-98338657 | MS.gene064807:CDS |
| TACCTTCCTCCGTCTTAATA+CGG | 0.482251 | 3.4:+98338892 | None:intergenic |
| CGGCTCCTCCACTGCCTATG+TGG | 0.490949 | 3.4:+98338760 | None:intergenic |
| CTCAAAGCTGCTGATGTGGC+GGG | 0.492245 | 3.4:-98338807 | MS.gene064807:CDS |
| TTTGAAACAGCTACACGGCT+TGG | 0.493170 | 3.4:-98338693 | MS.gene064807:CDS |
| AGAGAGTATTGGATCAATGA+TGG | 0.510313 | 3.4:-98338459 | MS.gene064807:CDS |
| ATGAAAATTCTTGATATTGG+TGG | 0.524512 | 3.4:-98338660 | MS.gene064807:CDS |
| GGGATGAGTTGAGAGAGTAT+TGG | 0.525387 | 3.4:-98338470 | MS.gene064807:CDS |
| TGAAACGCCAAGGGATAAAA+CGG | 0.525559 | 3.4:+98339061 | None:intergenic |
| ATTAAGACGGAGGAAGGTAG+TGG | 0.527699 | 3.4:-98338888 | MS.gene064807:CDS |
| TTTGGTGCTTCAGGAGTGAA+AGG | 0.530590 | 3.4:-98339347 | MS.gene064807:CDS |
| AACTTGTGATGCCATTGATA+CGG | 0.532310 | 3.4:-98338304 | MS.gene064807:CDS |
| TTCTGTCGGGTGAAACGCCA+AGG | 0.534531 | 3.4:+98339051 | None:intergenic |
| TTGCATGTTCAAGTCCTGTC+GGG | 0.538581 | 3.4:-98338152 | MS.gene064807:CDS |
| TCACCTCAAGTTCAGGTAGC+AGG | 0.539377 | 3.4:+98338268 | None:intergenic |
| GCTTCTCAAAGCTGCTGATG+TGG | 0.545870 | 3.4:-98338811 | MS.gene064807:CDS |
| TTCTCACATGCACCCCACTT+AGG | 0.546355 | 3.4:-98338395 | MS.gene064807:CDS |
| TAACTCTGATTTACACGGGT+TGG | 0.547050 | 3.4:+98339019 | None:intergenic |
| CTCCGTATTAAGACGGAGGA+AGG | 0.550571 | 3.4:-98338894 | MS.gene064807:CDS |
| CTTGCATGTTCAAGTCCTGT+CGG | 0.550768 | 3.4:-98338153 | MS.gene064807:CDS |
| GTAGGCACATTAGCTTCACT+TGG | 0.550820 | 3.4:-98339122 | MS.gene064807:CDS |
| CAATTACAACCCTTAAATCA+AGG | 0.551290 | 3.4:+98339225 | None:intergenic |
| TCTCAAAGCTGCTGATGTGG+CGG | 0.552805 | 3.4:-98338808 | MS.gene064807:CDS |
| ATGTGTAACTCTGATTTACA+CGG | 0.553353 | 3.4:+98339014 | None:intergenic |
| ATTAAATATGCTGCAAGTGT+CGG | 0.554694 | 3.4:-98338993 | MS.gene064807:CDS |
| GTTTCCGAAAAGTAACGGCC+AGG | 0.558733 | 3.4:+98338534 | None:intergenic |
| AATCTCCCCAACAGAGTCAA+AGG | 0.560154 | 3.4:+98338956 | None:intergenic |
| TCCTAAAACTTACCCATCAA+CGG | 0.560643 | 3.4:-98338337 | MS.gene064807:CDS |
| AGTTACAACTTTGTCATCAG+AGG | 0.563388 | 3.4:-98339318 | MS.gene064807:CDS |
| AACTACCTTTGACTCTGTTG+GGG | 0.567385 | 3.4:-98338961 | MS.gene064807:CDS |
| CTGAACTTGAGGTGAACGAT+TGG | 0.567508 | 3.4:-98338260 | MS.gene064807:CDS |
| TTGGCATAGATGATTCTGTC+GGG | 0.569299 | 3.4:+98339038 | None:intergenic |
| GATTCTTCGGCTACTAGTGT+AGG | 0.578341 | 3.4:+98339401 | None:intergenic |
| CCTCCGTCTTAATACGGAGG+AGG | 0.581352 | 3.4:+98338898 | None:intergenic |
| TGTGTAACTCTGATTTACAC+GGG | 0.588484 | 3.4:+98339015 | None:intergenic |
| AATTATTGGAAAACGTGTGA+GGG | 0.589559 | 3.4:-98338490 | MS.gene064807:CDS |
| GTACCTGCTACCTGAACTTG+AGG | 0.601377 | 3.4:-98338271 | MS.gene064807:CDS |
| AAATTATTGGAAAACGTGTG+AGG | 0.602326 | 3.4:-98338491 | MS.gene064807:CDS |
| CGACAGGACTTGAACATGCA+AGG | 0.611121 | 3.4:+98338154 | None:intergenic |
| AACTCATTTCGGAAATGACA+AGG | 0.614579 | 3.4:-98338577 | MS.gene064807:CDS |
| GTATCGTTCCACATAGGCAG+TGG | 0.616728 | 3.4:-98338768 | MS.gene064807:CDS |
| ATGTCGTTTCCGAAAAGTAA+CGG | 0.625854 | 3.4:+98338529 | None:intergenic |
| GTATCAATGGCATCACAAGT+TGG | 0.627608 | 3.4:+98338306 | None:intergenic |
| TCGTTCCACATAGGCAGTGG+AGG | 0.632211 | 3.4:-98338765 | MS.gene064807:CDS |
| GCTCCTCCTCCGTATTAAGA+CGG | 0.645011 | 3.4:-98338901 | MS.gene064807:CDS |
| GTTGGCATAGATGATTCTGT+CGG | 0.646092 | 3.4:+98339037 | None:intergenic |
| AAGGTAAATGTCCTTAGCTG+TGG | 0.650676 | 3.4:+98338173 | None:intergenic |
| GCCGATGCAAAAGCTTACCA+CGG | 0.668156 | 3.4:-98338741 | MS.gene064807:CDS |
| TCTGTCGGGTGAAACGCCAA+GGG | 0.670155 | 3.4:+98339052 | None:intergenic |
| ACTGGCGTATCGTTCCACAT+AGG | 0.686836 | 3.4:-98338774 | MS.gene064807:CDS |
| CCTCCTCCGTATTAAGACGG+AGG | 0.688874 | 3.4:-98338898 | MS.gene064807:CDS |
| CTTCCTCCGTCTTAATACGG+AGG | 0.698108 | 3.4:+98338895 | None:intergenic |
| AAACGGATTCAATTTCGGTG+CGG | 0.707037 | 3.4:+98339078 | None:intergenic |
| TAGCTGATAATATGGCTCCG+TGG | 0.725730 | 3.4:+98338724 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAAAATTCTTGATAT+TGG | - | chr3.4:98338884-98338903 | MS.gene064807:CDS | 15.0% |
| !! | AGATTGAAAAGATAAAAAAA+TGG | - | chr3.4:98338609-98338628 | MS.gene064807:CDS | 15.0% |
| !!! | ATATCAAGAATTTTCATTTT+TGG | + | chr3.4:98338884-98338903 | None:intergenic | 15.0% |
| !! | ACATTAGCAACAAAAATTAT+TGG | - | chr3.4:98339043-98339062 | MS.gene064807:CDS | 20.0% |
| !! | TAATTGATCTTATGAACAAA+TGG | - | chr3.4:98338339-98338358 | MS.gene064807:CDS | 20.0% |
| ! | AACTTCTTTAGCTGATAATA+TGG | + | chr3.4:98338834-98338853 | None:intergenic | 25.0% |
| ! | ATGAAAATTCTTGATATTGG+TGG | - | chr3.4:98338887-98338906 | MS.gene064807:CDS | 25.0% |
| ! | GATGCAATAAAAACTCATTT+CGG | - | chr3.4:98338959-98338978 | MS.gene064807:CDS | 25.0% |
| AAAATTCTTGATATTGGTGG+TGG | - | chr3.4:98338890-98338909 | MS.gene064807:CDS | 30.0% | |
| AAATTATTGGAAAACGTGTG+AGG | - | chr3.4:98339056-98339075 | MS.gene064807:CDS | 30.0% | |
| AATCCAAACATTTCACTTGT+AGG | - | chr3.4:98338407-98338426 | MS.gene064807:CDS | 30.0% | |
| AATTATTGGAAAACGTGTGA+GGG | - | chr3.4:98339057-98339076 | MS.gene064807:CDS | 30.0% | |
| ATGTGTAACTCTGATTTACA+CGG | + | chr3.4:98338536-98338555 | None:intergenic | 30.0% | |
| ATTAAATATGCTGCAAGTGT+CGG | - | chr3.4:98338554-98338573 | MS.gene064807:CDS | 30.0% | |
| ATTTAGCGTCCTTGATTTAA+GGG | - | chr3.4:98338313-98338332 | MS.gene064807:CDS | 30.0% | |
| CAATTACAACCCTTAAATCA+AGG | + | chr3.4:98338325-98338344 | None:intergenic | 30.0% | |
| TTACACTTAACAGCGTAAAA+AGG | + | chr3.4:98338389-98338408 | None:intergenic | 30.0% | |
| ! | ATTTTGAACCAAACCTAAGT+GGG | + | chr3.4:98339168-98339187 | None:intergenic | 30.0% |
| ! | CTTAACAGTTGGAAGTTTTA+TGG | + | chr3.4:98338366-98338385 | None:intergenic | 30.0% |
| ! | GGATAAAACGGATTCAATTT+CGG | + | chr3.4:98338477-98338496 | None:intergenic | 30.0% |
| ! | TGGATCAATGATGGAATTTA+CGG | - | chr3.4:98339097-98339116 | MS.gene064807:CDS | 30.0% |
| !!! | AAGTTTTTGAAACAGCTACA+CGG | - | chr3.4:98338849-98338868 | MS.gene064807:CDS | 30.0% |
| !!! | AGCTGGTTTGGTTTTAATAA+CGG | + | chr3.4:98338279-98338298 | None:intergenic | 30.0% |
| AACTCATTTCGGAAATGACA+AGG | - | chr3.4:98338970-98338989 | MS.gene064807:CDS | 35.0% | |
| AACTTGTGATGCCATTGATA+CGG | - | chr3.4:98339243-98339262 | MS.gene064807:CDS | 35.0% | |
| AGTTACAACTTTGTCATCAG+AGG | - | chr3.4:98338229-98338248 | MS.gene064807:CDS | 35.0% | |
| CAATGCAGCTTCATCAAATT+TGG | + | chr3.4:98338930-98338949 | None:intergenic | 35.0% | |
| CATTTAGCGTCCTTGATTTA+AGG | - | chr3.4:98338312-98338331 | MS.gene064807:CDS | 35.0% | |
| CTTAAATCAAGGACGCTAAA+TGG | + | chr3.4:98338314-98338333 | None:intergenic | 35.0% | |
| GCATCTTTGAGTGTCAAATA+TGG | - | chr3.4:98338689-98338708 | MS.gene064807:CDS | 35.0% | |
| GTTGTATATGCACCCATATT+TGG | + | chr3.4:98339322-98339341 | None:intergenic | 35.0% | |
| TAACTACCTTTGACTCTGTT+GGG | - | chr3.4:98338585-98338604 | MS.gene064807:CDS | 35.0% | |
| TCCTAAAACTTACCCATCAA+CGG | - | chr3.4:98339210-98339229 | MS.gene064807:CDS | 35.0% | |
| TGTGTAACTCTGATTTACAC+GGG | + | chr3.4:98338535-98338554 | None:intergenic | 35.0% | |
| TTAACTACCTTTGACTCTGT+TGG | - | chr3.4:98338584-98338603 | MS.gene064807:CDS | 35.0% | |
| ! | AATTTGGGATAGGGATTCTT+CGG | + | chr3.4:98338162-98338181 | None:intergenic | 35.0% |
| ! | ATGTCGTTTCCGAAAAGTAA+CGG | + | chr3.4:98339021-98339040 | None:intergenic | 35.0% |
| ! | ATTGAATCCGTTTTATCCCT+TGG | - | chr3.4:98338479-98338498 | MS.gene064807:CDS | 35.0% |
| ! | GATTTTGAACCAAACCTAAG+TGG | + | chr3.4:98339169-98339188 | None:intergenic | 35.0% |
| ! | TGGCTTGTGTTTCCAAATAT+GGG | - | chr3.4:98339307-98339326 | MS.gene064807:CDS | 35.0% |
| ! | TTTTGAACCAAACCTAAGTG+GGG | + | chr3.4:98339167-98339186 | None:intergenic | 35.0% |
| !! | AGAGAGTATTGGATCAATGA+TGG | - | chr3.4:98339088-98339107 | MS.gene064807:CDS | 35.0% |
| !! | CTTCTGGAACCAATTTCAAT+GGG | - | chr3.4:98339344-98339363 | MS.gene064807:CDS | 35.0% |
| !! | GACAAGGATCTTGTTGTTAT+TGG | - | chr3.4:98338986-98339005 | MS.gene064807:CDS | 35.0% |
| !! | TCTTCTGGAACCAATTTCAA+TGG | - | chr3.4:98339343-98339362 | MS.gene064807:CDS | 35.0% |
| !! | TTGGCTTGTGTTTCCAAATA+TGG | - | chr3.4:98339306-98339325 | MS.gene064807:CDS | 35.0% |
| AACTACCTTTGACTCTGTTG+GGG | - | chr3.4:98338586-98338605 | MS.gene064807:CDS | 40.0% | |
| AAGGTAAATGTCCTTAGCTG+TGG | + | chr3.4:98339377-98339396 | None:intergenic | 40.0% | |
| GCGTAAAAAGGCTTAACAGT+TGG | + | chr3.4:98338377-98338396 | None:intergenic | 40.0% | |
| GGAGCAAAACCCATTGAAAT+TGG | + | chr3.4:98339356-98339375 | None:intergenic | 40.0% | |
| GGTGCATATACAACTTCTTC+TGG | - | chr3.4:98339328-98339347 | MS.gene064807:CDS | 40.0% | |
| GTATCAATGGCATCACAAGT+TGG | + | chr3.4:98339244-98339263 | None:intergenic | 40.0% | |
| GTGCCTACAAGTGAAATGTT+TGG | + | chr3.4:98338413-98338432 | None:intergenic | 40.0% | |
| GTTGGCATAGATGATTCTGT+CGG | + | chr3.4:98338513-98338532 | None:intergenic | 40.0% | |
| TAACTCTGATTTACACGGGT+TGG | + | chr3.4:98338531-98338550 | None:intergenic | 40.0% | |
| TACCTTCCTCCGTCTTAATA+CGG | + | chr3.4:98338658-98338677 | None:intergenic | 40.0% | |
| TGAAACGCCAAGGGATAAAA+CGG | + | chr3.4:98338489-98338508 | None:intergenic | 40.0% | |
| TTGGCATAGATGATTCTGTC+GGG | + | chr3.4:98338512-98338531 | None:intergenic | 40.0% | |
| TTGGTCCAAAAACCGTTGAT+GGG | + | chr3.4:98339225-98339244 | None:intergenic | 40.0% | |
| ! | AAACGGATTCAATTTCGGTG+CGG | + | chr3.4:98338472-98338491 | None:intergenic | 40.0% |
| ! | ACTCCTGAAGCACCAAAAAT+GGG | + | chr3.4:98338197-98338216 | None:intergenic | 40.0% |
| ! | ACTTACCCATCAACGGTTTT+TGG | - | chr3.4:98339217-98339236 | MS.gene064807:CDS | 40.0% |
| ! | CTCTTTGAGAACCGTATCAA+TGG | + | chr3.4:98339257-98339276 | None:intergenic | 40.0% |
| !! | AATGGTGAGTCATTTTCAGC+TGG | + | chr3.4:98338296-98338315 | None:intergenic | 40.0% |
| !! | ACCGTTGATGGGTAAGTTTT+AGG | + | chr3.4:98339214-98339233 | None:intergenic | 40.0% |
| !! | CTTGTTGTTATTGGTGAACC+TGG | - | chr3.4:98338995-98339014 | MS.gene064807:CDS | 40.0% |
| !! | TGAGTCATTTTCAGCTGGTT+TGG | + | chr3.4:98338291-98338310 | None:intergenic | 40.0% |
| AATCTCCCCAACAGAGTCAA+AGG | + | chr3.4:98338594-98338613 | None:intergenic | 45.0% | |
| ATTAAGACGGAGGAAGGTAG+TGG | - | chr3.4:98338659-98338678 | MS.gene064807:CDS | 45.0% | |
| CAATCGTTCACCTCAAGTTC+AGG | + | chr3.4:98339289-98339308 | None:intergenic | 45.0% | |
| CTGAACTTGAGGTGAACGAT+TGG | - | chr3.4:98339287-98339306 | MS.gene064807:CDS | 45.0% | |
| CTTGCATGTTCAAGTCCTGT+CGG | - | chr3.4:98339394-98339413 | MS.gene064807:CDS | 45.0% | |
| GATTCTTCGGCTACTAGTGT+AGG | + | chr3.4:98338149-98338168 | None:intergenic | 45.0% | |
| GTTGGTCCAAAAACCGTTGA+TGG | + | chr3.4:98339226-98339245 | None:intergenic | 45.0% | |
| TAGCTGATAATATGGCTCCG+TGG | + | chr3.4:98338826-98338845 | None:intergenic | 45.0% | |
| TTGCATGTTCAAGTCCTGTC+GGG | - | chr3.4:98339395-98339414 | MS.gene064807:CDS | 45.0% | |
| ! | AAGCACCAAAAATGGGCTTC+AGG | + | chr3.4:98338190-98338209 | None:intergenic | 45.0% |
| ! | ACCAAAAATGGGCTTCAGGT+TGG | + | chr3.4:98338186-98338205 | None:intergenic | 45.0% |
| ! | CACTCCTGAAGCACCAAAAA+TGG | + | chr3.4:98338198-98338217 | None:intergenic | 45.0% |
| ! | CAGGTTGGCAATTTGGGATA+GGG | + | chr3.4:98338171-98338190 | None:intergenic | 45.0% |
| ! | GGGATGAGTTGAGAGAGTAT+TGG | - | chr3.4:98339077-98339096 | MS.gene064807:CDS | 45.0% |
| ! | GTAGGCACATTAGCTTCACT+TGG | - | chr3.4:98338425-98338444 | MS.gene064807:CDS | 45.0% |
| ! | TCCGTGGTAAGCTTTTGCAT+CGG | + | chr3.4:98338810-98338829 | None:intergenic | 45.0% |
| ! | TTTGAAACAGCTACACGGCT+TGG | - | chr3.4:98338854-98338873 | MS.gene064807:CDS | 45.0% |
| !! | ATCAGCAGCTTTGAGAAGCT+TGG | + | chr3.4:98338735-98338754 | None:intergenic | 45.0% |
| !! | ATTGGTGGTGGATTCACTTC+TGG | - | chr3.4:98338902-98338921 | MS.gene064807:CDS | 45.0% |
| !! | TCAGCAGCTTTGAGAAGCTT+GGG | + | chr3.4:98338734-98338753 | None:intergenic | 45.0% |
| !! | TCAGGTTGGCAATTTGGGAT+AGG | + | chr3.4:98338172-98338191 | None:intergenic | 45.0% |
| !! | TTTGGTGCTTCAGGAGTGAA+AGG | - | chr3.4:98338200-98338219 | MS.gene064807:CDS | 45.0% |
| !!! | AAGCCCATTTTTGGTGCTTC+AGG | - | chr3.4:98338191-98338210 | MS.gene064807:CDS | 45.0% |
| !!! | TGAACCTGGCCGTTACTTTT+CGG | - | chr3.4:98339009-98339028 | MS.gene064807:CDS | 45.0% |
| ACATGCACCCCACTTAGGTT+TGG | - | chr3.4:98339157-98339176 | MS.gene064807:CDS | 50.0% | |
| ACTGGCGTATCGTTCCACAT+AGG | - | chr3.4:98338773-98338792 | MS.gene064807:CDS | 50.0% | |
| CGACAGGACTTGAACATGCA+AGG | + | chr3.4:98339396-98339415 | None:intergenic | 50.0% | |
| CTCCGTATTAAGACGGAGGA+AGG | - | chr3.4:98338653-98338672 | MS.gene064807:CDS | 50.0% | |
| CTTCCTCCGTCTTAATACGG+AGG | + | chr3.4:98338655-98338674 | None:intergenic | 50.0% | |
| GCCGATGCAAAAGCTTACCA+CGG | - | chr3.4:98338806-98338825 | MS.gene064807:CDS | 50.0% | |
| GCTCCTCCTCCGTATTAAGA+CGG | - | chr3.4:98338646-98338665 | MS.gene064807:CDS | 50.0% | |
| GCTTCTCAAAGCTGCTGATG+TGG | - | chr3.4:98338736-98338755 | MS.gene064807:CDS | 50.0% | |
| GTACCTGCTACCTGAACTTG+AGG | - | chr3.4:98339276-98339295 | MS.gene064807:CDS | 50.0% | |
| GTATCGTTCCACATAGGCAG+TGG | - | chr3.4:98338779-98338798 | MS.gene064807:CDS | 50.0% | |
| GTTTCCGAAAAGTAACGGCC+AGG | + | chr3.4:98339016-98339035 | None:intergenic | 50.0% | |
| TCACCTCAAGTTCAGGTAGC+AGG | + | chr3.4:98339282-98339301 | None:intergenic | 50.0% | |
| TCTCAAAGCTGCTGATGTGG+CGG | - | chr3.4:98338739-98338758 | MS.gene064807:CDS | 50.0% | |
| TTCTCACATGCACCCCACTT+AGG | - | chr3.4:98339152-98339171 | MS.gene064807:CDS | 50.0% | |
| ! | GCCAACCTGAAGCCCATTTT+TGG | - | chr3.4:98338182-98338201 | MS.gene064807:CDS | 50.0% |
| ! | GTGGCGGGACTTAAAGTAAC+TGG | - | chr3.4:98338755-98338774 | MS.gene064807:CDS | 50.0% |
| ! | TGGGTTTTGCTCCACAGCTA+AGG | - | chr3.4:98339363-98339382 | MS.gene064807:CDS | 50.0% |
| !! | GGGCTTCAGGTTGGCAATTT+GGG | + | chr3.4:98338177-98338196 | None:intergenic | 50.0% |
| !! | TGGGCTTCAGGTTGGCAATT+TGG | + | chr3.4:98338178-98338197 | None:intergenic | 50.0% |
| CCTCCGTCTTAATACGGAGG+AGG | + | chr3.4:98338652-98338671 | None:intergenic | 55.0% | |
| CCTCCTCCGTATTAAGACGG+AGG | - | chr3.4:98338649-98338668 | MS.gene064807:CDS | 55.0% | |
| CTCAAAGCTGCTGATGTGGC+GGG | - | chr3.4:98338740-98338759 | MS.gene064807:CDS | 55.0% | |
| TCGTTCCACATAGGCAGTGG+AGG | - | chr3.4:98338782-98338801 | MS.gene064807:CDS | 55.0% | |
| TCTGTCGGGTGAAACGCCAA+GGG | + | chr3.4:98338498-98338517 | None:intergenic | 55.0% | |
| TTCTGTCGGGTGAAACGCCA+AGG | + | chr3.4:98338499-98338518 | None:intergenic | 55.0% | |
| ! | CGGAGGAGGAGCTCACATTT+TGG | + | chr3.4:98338638-98338657 | None:intergenic | 55.0% |
| ! | GGATTCAATTTCGGTGCGGC+TGG | + | chr3.4:98338468-98338487 | None:intergenic | 55.0% |
| CGGCTCCTCCACTGCCTATG+TGG | + | chr3.4:98338790-98338809 | None:intergenic | 65.0% | |
| GCGGCTGGCGCAGTCGAAAT+TGG | + | chr3.4:98338453-98338472 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 98338143 | 98339426 | 98338143 | ID=MS.gene064807 |
| chr3.4 | mRNA | 98338143 | 98339426 | 98338143 | ID=MS.gene064807.t1;Parent=MS.gene064807 |
| chr3.4 | exon | 98338143 | 98339426 | 98338143 | ID=MS.gene064807.t1.exon1;Parent=MS.gene064807.t1 |
| chr3.4 | CDS | 98338143 | 98339426 | 98338143 | ID=cds.MS.gene064807.t1;Parent=MS.gene064807.t1 |
| Gene Sequence |
| Protein sequence |
