Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065735.t1 | XP_013467964.1 | 98 | 306 | 5 | 1 | 1 | 306 | 1 | 305 | 2.70E-146 | 528.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065735.t1 | Q8VYD8 | 69.2 | 305 | 82 | 3 | 5 | 306 | 20 | 315 | 4.3e-92 | 339.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065735.t1 | A0A072VK52 | 98.0 | 306 | 5 | 1 | 1 | 306 | 1 | 305 | 2.0e-146 | 528.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050670 | MS.gene065735 | 0.821112 | 4.80E-53 | -1.69E-46 |
| MS.gene051582 | MS.gene065735 | 0.834556 | 2.80E-56 | -1.69E-46 |
| MS.gene052188 | MS.gene065735 | 0.8152 | 1.04E-51 | -1.69E-46 |
| MS.gene052253 | MS.gene065735 | 0.807648 | 4.56E-50 | -1.69E-46 |
| MS.gene052322 | MS.gene065735 | 0.806588 | 7.65E-50 | -1.69E-46 |
| MS.gene053928 | MS.gene065735 | 0.828623 | 8.11E-55 | -1.69E-46 |
| MS.gene054102 | MS.gene065735 | 0.823667 | 1.22E-53 | -1.69E-46 |
| MS.gene054123 | MS.gene065735 | 0.818194 | 2.23E-52 | -1.69E-46 |
| MS.gene05412 | MS.gene065735 | 0.821467 | 3.98E-53 | -1.69E-46 |
| MS.gene05553 | MS.gene065735 | 0.835307 | 1.81E-56 | -1.69E-46 |
| MS.gene056407 | MS.gene065735 | 0.804686 | 1.92E-49 | -1.69E-46 |
| MS.gene056497 | MS.gene065735 | 0.850335 | 1.82E-60 | -1.69E-46 |
| MS.gene056659 | MS.gene065735 | 0.800673 | 1.29E-48 | -1.69E-46 |
| MS.gene056723 | MS.gene065735 | 0.831104 | 2.02E-55 | -1.69E-46 |
| MS.gene05702 | MS.gene065735 | 0.807861 | 4.11E-50 | -1.69E-46 |
| MS.gene057124 | MS.gene065735 | 0.839684 | 1.37E-57 | -1.69E-46 |
| MS.gene057396 | MS.gene065735 | 0.810269 | 1.25E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene065735 | 0.806214 | 9.17E-50 | -1.69E-46 |
| MS.gene057825 | MS.gene065735 | 0.819433 | 1.16E-52 | -1.69E-46 |
| MS.gene058142 | MS.gene065735 | 0.83954 | 1.49E-57 | -1.69E-46 |
| MS.gene058276 | MS.gene065735 | 0.808966 | 2.39E-50 | -1.69E-46 |
| MS.gene05886 | MS.gene065735 | 0.825968 | 3.51E-54 | -1.69E-46 |
| MS.gene058949 | MS.gene065735 | 0.80058 | 1.35E-48 | -1.69E-46 |
| MS.gene059234 | MS.gene065735 | 0.822895 | 1.85E-53 | -1.69E-46 |
| MS.gene059247 | MS.gene065735 | 0.802596 | 5.20E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene065735 | 0.812567 | 3.97E-51 | -1.69E-46 |
| MS.gene061159 | MS.gene065735 | 0.814608 | 1.41E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045698 | MS.gene065735 | PPI |
| MS.gene065735 | MS.gene75750 | PPI |
| MS.gene065735 | MS.gene78047 | PPI |
| MS.gene065735 | MS.gene77754 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065735.t1 | MTR_1g059670 | 98.039 | 306 | 5 | 1 | 1 | 306 | 1 | 305 | 0.0 | 610 |
| MS.gene065735.t1 | MTR_4g035650 | 69.231 | 247 | 74 | 1 | 60 | 306 | 68 | 312 | 1.53e-124 | 358 |
| MS.gene065735.t1 | MTR_4g035650 | 68.016 | 247 | 75 | 2 | 60 | 306 | 68 | 310 | 1.01e-120 | 349 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065735.t1 | AT5G06130 | 68.874 | 302 | 88 | 3 | 10 | 306 | 15 | 315 | 3.58e-144 | 409 |
| MS.gene065735.t1 | AT5G06130 | 77.155 | 232 | 52 | 1 | 75 | 306 | 1 | 231 | 1.15e-129 | 369 |
| MS.gene065735.t1 | AT5G61670 | 69.880 | 249 | 73 | 1 | 58 | 306 | 61 | 307 | 6.37e-125 | 359 |
| MS.gene065735.t1 | AT5G61670 | 69.880 | 249 | 73 | 1 | 58 | 306 | 61 | 307 | 6.37e-125 | 359 |
Find 65 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATAAAATCTTTCTTCTTA+TGG | 0.155230 | 1.2:+46052581 | MS.gene065735:CDS |
| ATATCTGCAATAATTGTATT+TGG | 0.197063 | 1.2:+46053499 | MS.gene065735:CDS |
| ATGGCAGCTGGAGCTGAAAT+TGG | 0.211679 | 1.2:+46054731 | MS.gene065735:intron |
| GGAATAGATGATGGAATTTC+CGG | 0.218058 | 1.2:-46053107 | None:intergenic |
| TTTGAACATTAATCCGATTT+CGG | 0.296746 | 1.2:+46055228 | MS.gene065735:CDS |
| TTTCCAGCACCAGAGCAATT+TGG | 0.301546 | 1.2:-46055301 | None:intergenic |
| TTTAAAAGGGGCAAAGAAAA+TGG | 0.310012 | 1.2:-46052273 | None:intergenic |
| TGCATTTGCCTTTGCAACTA+AGG | 0.340206 | 1.2:+46054793 | MS.gene065735:CDS |
| TAACTTCGGTGTGATTTCAT+TGG | 0.379581 | 1.2:-46052369 | None:intergenic |
| CCAGAAAAGGATGCCACAAT+TGG | 0.390313 | 1.2:-46054956 | None:intergenic |
| TGTCCAACCTGCCTTTGCAC+TGG | 0.394247 | 1.2:+46055434 | MS.gene065735:CDS |
| ATTAATCCGATTTCGGCATC+TGG | 0.402233 | 1.2:+46055235 | MS.gene065735:CDS |
| GAAGGAGAGAAAGTATTCAT+TGG | 0.405939 | 1.2:-46052212 | None:intergenic |
| TTGAAGAAGCTCTATCTAAC+AGG | 0.406814 | 1.2:+46053466 | MS.gene065735:CDS |
| ACAAAATCCTGAACCGTCTC+TGG | 0.410773 | 1.2:-46052513 | None:intergenic |
| TGAAGGGCCAGAGACGGTTC+AGG | 0.422644 | 1.2:+46052506 | MS.gene065735:CDS |
| TTTGGACACCTTGTCGTTGT+AGG | 0.425866 | 1.2:-46055283 | None:intergenic |
| CTCACCACATGAGGAAGAAA+AGG | 0.428649 | 1.2:-46053128 | None:intergenic |
| GAAGTACCAGATGCCGAAAT+CGG | 0.441052 | 1.2:-46055241 | None:intergenic |
| TTCAGTACTGATGTTAATTG+AGG | 0.445259 | 1.2:+46054997 | MS.gene065735:CDS |
| TGTCCAAATTGCTCTGGTGC+TGG | 0.448257 | 1.2:+46055298 | MS.gene065735:CDS |
| TAGAGCTTCTTCAAAGTGTT+GGG | 0.450361 | 1.2:-46053457 | None:intergenic |
| CTGGAGCTGAAATTGGGTAT+AGG | 0.452466 | 1.2:+46054738 | MS.gene065735:CDS |
| AATCTTTCTTCTTATGGAAG+AGG | 0.457917 | 1.2:+46052587 | MS.gene065735:CDS |
| TGCTCTTCTCCACAGGATGC+AGG | 0.457995 | 1.2:+46052344 | MS.gene065735:CDS |
| TGCAAGTATTGCCTTGGAAC+TGG | 0.458275 | 1.2:+46055052 | MS.gene065735:CDS |
| TACTTCTGTTAGACCCCTGC+AGG | 0.461988 | 1.2:+46055258 | MS.gene065735:CDS |
| CATGTAAAGAATTAGTCAAA+TGG | 0.467029 | 1.2:-46055494 | None:intergenic |
| GCCAACTGCTCCACCAGAAA+AGG | 0.470825 | 1.2:-46054969 | None:intergenic |
| ATAGAGCTTCTTCAAAGTGT+TGG | 0.477201 | 1.2:-46053458 | None:intergenic |
| CTGCAATAATTGTATTTGGC+GGG | 0.477772 | 1.2:+46053503 | MS.gene065735:CDS |
| CAGGTTACTTGGCTTGCGCT+CGG | 0.481171 | 1.2:+46055185 | MS.gene065735:intron |
| GTCCAACCTGCCTTTGCACT+GGG | 0.482552 | 1.2:+46055435 | MS.gene065735:CDS |
| TGGCAGCTGGAGCTGAAATT+GGG | 0.494726 | 1.2:+46054732 | MS.gene065735:intron |
| TATAGGTGGCACGTCATATG+AGG | 0.498079 | 1.2:+46054755 | MS.gene065735:CDS |
| GGAAGAAAAGGAATAGATGA+TGG | 0.501221 | 1.2:-46053116 | None:intergenic |
| TTGTCGTTGTAGGAACCTGC+AGG | 0.508146 | 1.2:-46055273 | None:intergenic |
| AAAGGTAGAATTGTGGAGGA+AGG | 0.517842 | 1.2:-46052230 | None:intergenic |
| CAGAAAAGGATGCCACAATT+GGG | 0.522263 | 1.2:-46054955 | None:intergenic |
| ACAAGGTGCAAGTATTGCCT+TGG | 0.523158 | 1.2:+46055046 | MS.gene065735:CDS |
| TGCGCTCGGTGTTCCACAAG+TGG | 0.528281 | 1.2:+46055199 | MS.gene065735:CDS |
| AATTGCGTGCTCTTCTCCAC+AGG | 0.533626 | 1.2:+46052337 | MS.gene065735:CDS |
| ACAAGGTGTCCAAATTGCTC+TGG | 0.537901 | 1.2:+46055292 | MS.gene065735:CDS |
| GTTCAAACATACACCACTTG+TGG | 0.537962 | 1.2:-46055212 | None:intergenic |
| CTTCATCCCAGTGCAAAGGC+AGG | 0.549940 | 1.2:-46055441 | None:intergenic |
| AAATTGCTCTGGTGCTGGAA+AGG | 0.553692 | 1.2:+46055303 | MS.gene065735:CDS |
| GGAAGATGCAAATGAGATGC+CGG | 0.556353 | 1.2:+46053088 | MS.gene065735:CDS |
| TCTGCAATAATTGTATTTGG+CGG | 0.560108 | 1.2:+46053502 | MS.gene065735:CDS |
| CATCATTGAAGGGCCAGAGA+CGG | 0.562395 | 1.2:+46052500 | MS.gene065735:CDS |
| GGAGATTGCGTGTGCAGCAG+CGG | 0.563072 | 1.2:+46053027 | MS.gene065735:CDS |
| ATAGCATACCTTAGTTGCAA+AGG | 0.566228 | 1.2:-46054801 | None:intergenic |
| TGAAGGGAAAGGTAGAATTG+TGG | 0.569401 | 1.2:-46052237 | None:intergenic |
| ATCCCAGTGCAAAGGCAGGT+TGG | 0.571963 | 1.2:-46055437 | None:intergenic |
| TGTCGTTGTAGGAACCTGCA+GGG | 0.577519 | 1.2:-46055272 | None:intergenic |
| CAGTCAAGTTGACCCAATTG+TGG | 0.589524 | 1.2:+46054943 | MS.gene065735:intron |
| GAGCTGAAATTGGGTATAGG+TGG | 0.607211 | 1.2:+46054741 | MS.gene065735:CDS |
| CCTTTGCACTGGGATGAAGA+TGG | 0.608589 | 1.2:+46055445 | MS.gene065735:CDS |
| TCATTGGAGCCTGCATCCTG+TGG | 0.609087 | 1.2:-46052353 | None:intergenic |
| AGGGAAAGGTAGAATTGTGG+AGG | 0.616825 | 1.2:-46052234 | None:intergenic |
| TGGCGGGCTTATTGCACCGA+CGG | 0.621713 | 1.2:+46053519 | MS.gene065735:CDS |
| CCATCTTCATCCCAGTGCAA+AGG | 0.623251 | 1.2:-46055445 | None:intergenic |
| TTGAGCAACAAGAGAAAACA+AGG | 0.624269 | 1.2:+46055029 | MS.gene065735:CDS |
| GTAGAAACATACCAGTTCCA+AGG | 0.632023 | 1.2:-46055063 | None:intergenic |
| GTCGTTGTAGGAACCTGCAG+GGG | 0.684640 | 1.2:-46055271 | None:intergenic |
| TGCAGGTTCCTACAACGACA+AGG | 0.684689 | 1.2:+46055275 | MS.gene065735:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAACTAACTT+CGG | - | chr1.2:46052386-46052405 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTGCTTATT+GGG | + | chr1.2:46052396-46052415 | MS.gene065735:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTGCTTAT+TGG | + | chr1.2:46052395-46052414 | MS.gene065735:intron | 10.0% |
| !! | AATTATAGAAAATAGCATAA+AGG | - | chr1.2:46054254-46054273 | None:intergenic | 15.0% |
| !! | ATTATAGAAAATAGCATAAA+GGG | - | chr1.2:46054253-46054272 | None:intergenic | 15.0% |
| !!! | AATTGTGACAATTTAAATTT+TGG | + | chr1.2:46054123-46054142 | MS.gene065735:intron | 15.0% |
| !!! | ATAAAAAGTTTTTGAAATCA+AGG | - | chr1.2:46054344-46054363 | None:intergenic | 15.0% |
| !!! | ATATGTGTTTTTTTTTGTTT+AGG | + | chr1.2:46055406-46055425 | MS.gene065735:intron | 15.0% |
| !!! | ATATTGAATCCTTATTTTAA+TGG | + | chr1.2:46054712-46054731 | MS.gene065735:intron | 15.0% |
| !!! | ATGTTAATGATTAATTTGTT+AGG | + | chr1.2:46054378-46054397 | MS.gene065735:intron | 15.0% |
| !!! | ATTGTGACAATTTAAATTTT+GGG | + | chr1.2:46054124-46054143 | MS.gene065735:intron | 15.0% |
| !!! | TTATTTACCTTTAATTTAAG+TGG | + | chr1.2:46054604-46054623 | MS.gene065735:intron | 15.0% |
| !!! | TTTTGAATAACTTATGAAAA+CGG | - | chr1.2:46052879-46052898 | None:intergenic | 15.0% |
| !! | AACATAGTGATACTTAATAA+GGG | - | chr1.2:46053666-46053685 | None:intergenic | 20.0% |
| !! | AATTAAACAGTTGCATATAT+CGG | - | chr1.2:46055348-46055367 | None:intergenic | 20.0% |
| !! | ATATCTGCAATAATTGTATT+TGG | + | chr1.2:46053499-46053518 | MS.gene065735:CDS | 20.0% |
| !! | ATTAGTAGTACATAAAGTAT+AGG | + | chr1.2:46054271-46054290 | MS.gene065735:intron | 20.0% |
| !! | ATTTCTTTCTTTCTGATAAA+CGG | - | chr1.2:46054857-46054876 | None:intergenic | 20.0% |
| !! | CAATAAAATCTTTCTTCTTA+TGG | + | chr1.2:46052581-46052600 | MS.gene065735:CDS | 20.0% |
| !! | CATAAATAGAGAAATCTTAA+GGG | + | chr1.2:46054540-46054559 | MS.gene065735:intron | 20.0% |
| !! | TAACATAGTGATACTTAATA+AGG | - | chr1.2:46053667-46053686 | None:intergenic | 20.0% |
| !! | TAGTTTAAATAAGACACTTA+AGG | + | chr1.2:46053252-46053271 | MS.gene065735:intron | 20.0% |
| !! | TCATAAATAGAGAAATCTTA+AGG | + | chr1.2:46054539-46054558 | MS.gene065735:intron | 20.0% |
| !! | TTATTATCTCTATTTGTCAT+AGG | + | chr1.2:46053621-46053640 | MS.gene065735:intron | 20.0% |
| !! | TTGACTTAGAAAAAGAAAAT+TGG | - | chr1.2:46052313-46052332 | None:intergenic | 20.0% |
| !!! | AAATTCTAGAAAGAATAGAA+AGG | - | chr1.2:46055134-46055153 | None:intergenic | 20.0% |
| !!! | AAATTTGTAATTTTATGGAC+AGG | + | chr1.2:46055166-46055185 | MS.gene065735:intron | 20.0% |
| !!! | AATTTTCTTTTTCTAAGTCA+AGG | + | chr1.2:46052312-46052331 | MS.gene065735:CDS | 20.0% |
| !!! | GTCAATTTTCATTCATATTA+TGG | + | chr1.2:46052643-46052662 | MS.gene065735:intron | 20.0% |
| !!! | TTGTGACAATTTAAATTTTG+GGG | + | chr1.2:46054125-46054144 | MS.gene065735:intron | 20.0% |
| ! | AAAACAATAGAGAGAGAAAA+AGG | + | chr1.2:46053975-46053994 | MS.gene065735:intron | 25.0% |
| ! | ATACTTAATAAGGGTAACAA+AGG | - | chr1.2:46053657-46053676 | None:intergenic | 25.0% |
| ! | CAAAATTTAAACTTTGCAAC+TGG | + | chr1.2:46052435-46052454 | MS.gene065735:intron | 25.0% |
| ! | CACTATGTTAAGTTTAAATC+TGG | + | chr1.2:46053677-46053696 | MS.gene065735:intron | 25.0% |
| ! | CTTAGAAAAAGAAAATTGGT+TGG | - | chr1.2:46052309-46052328 | None:intergenic | 25.0% |
| ! | GTAAATAAATGTGAGTGAAT+AGG | - | chr1.2:46054592-46054611 | None:intergenic | 25.0% |
| ! | TAAGACAATAAAATTACCGT+CGG | - | chr1.2:46053538-46053557 | None:intergenic | 25.0% |
| ! | TATGAGACCACTTAAATTAA+AGG | - | chr1.2:46054614-46054633 | None:intergenic | 25.0% |
| ! | TCTTCAGTACTTAAAGATAT+TGG | - | chr1.2:46053209-46053228 | None:intergenic | 25.0% |
| ! | TTTGAACATTAATCCGATTT+CGG | + | chr1.2:46055228-46055247 | MS.gene065735:CDS | 25.0% |
| !! | ATCTTTTAATCATTTGCTCT+TGG | - | chr1.2:46054214-46054233 | None:intergenic | 25.0% |
| !! | GTCTTATCATTTAAGATGAA+AGG | - | chr1.2:46053871-46053890 | None:intergenic | 25.0% |
| !! | GTTTTCATGTAACTTATAAG+CGG | + | chr1.2:46052778-46052797 | MS.gene065735:intron | 25.0% |
| !! | TGATATTTGTACAACCATTT+TGG | - | chr1.2:46054059-46054078 | None:intergenic | 25.0% |
| !! | TTTGAAATGAATGTAGATCA+TGG | - | chr1.2:46054693-46054712 | None:intergenic | 25.0% |
| !!! | AACTTGCTATAAGATATAAG+CGG | - | chr1.2:46052958-46052977 | None:intergenic | 25.0% |
| !!! | TATCATTTCTCTTTTGAGAA+TGG | + | chr1.2:46054074-46054093 | MS.gene065735:intron | 25.0% |
| !!! | TGGTTTTACTACCTTTAAAA+GGG | - | chr1.2:46052289-46052308 | None:intergenic | 25.0% |
| !!! | TTGGTTTTACTACCTTTAAA+AGG | - | chr1.2:46052290-46052309 | None:intergenic | 25.0% |
| AACAGACACTCAAGTAATTT+AGG | - | chr1.2:46053590-46053609 | None:intergenic | 30.0% | |
| AATCTTTCTTCTTATGGAAG+AGG | + | chr1.2:46052587-46052606 | MS.gene065735:CDS | 30.0% | |
| AGGAACTTTGTAAAATGAGA+GGG | + | chr1.2:46054291-46054310 | MS.gene065735:intron | 30.0% | |
| CCAATAGCTTAATCAAAACA+AGG | - | chr1.2:46053162-46053181 | None:intergenic | 30.0% | |
| GAACAACAAAGTTGTCTTAA+AGG | - | chr1.2:46053938-46053957 | None:intergenic | 30.0% | |
| GTAGAAAAGTTGTACCAAAA+TGG | + | chr1.2:46054042-46054061 | MS.gene065735:intron | 30.0% | |
| TAAAGTGAGAATTAAACCCA+AGG | - | chr1.2:46053730-46053749 | None:intergenic | 30.0% | |
| TAGGAACTTTGTAAAATGAG+AGG | + | chr1.2:46054290-46054309 | MS.gene065735:intron | 30.0% | |
| TCTGCAATAATTGTATTTGG+CGG | + | chr1.2:46053502-46053521 | MS.gene065735:CDS | 30.0% | |
| TCTTAAAGGTTGTACCAAAA+TGG | - | chr1.2:46053924-46053943 | None:intergenic | 30.0% | |
| TGACACTATCTAATGAAGTA+TGG | - | chr1.2:46052627-46052646 | None:intergenic | 30.0% | |
| TGACTAATGAGAAATGAGTA+TGG | + | chr1.2:46052997-46053016 | MS.gene065735:intron | 30.0% | |
| TGTTAAGTTTAAATCTGGCT+TGG | + | chr1.2:46053682-46053701 | MS.gene065735:intron | 30.0% | |
| TTAATCATTTGCTCTTGGAA+AGG | - | chr1.2:46054209-46054228 | None:intergenic | 30.0% | |
| TTCGATAGATGAGAAACAAA+AGG | - | chr1.2:46053359-46053378 | None:intergenic | 30.0% | |
| TTTAAAAGGGGCAAAGAAAA+TGG | - | chr1.2:46052276-46052295 | None:intergenic | 30.0% | |
| ! | AATTTTATGGACAGGTTACT+TGG | + | chr1.2:46055174-46055193 | MS.gene065735:intron | 30.0% |
| ! | ATAACTAATTCCGTGCTTTT+CGG | + | chr1.2:46053421-46053440 | MS.gene065735:intron | 30.0% |
| ! | ATTTTCTTTGCCCCTTTTAA+AGG | + | chr1.2:46052275-46052294 | MS.gene065735:CDS | 30.0% |
| ! | GATAAAAGTATGAGTGAACA+TGG | - | chr1.2:46053753-46053772 | None:intergenic | 30.0% |
| !! | AAAGAATTTGTTAGCACAGT+AGG | + | chr1.2:46054406-46054425 | MS.gene065735:intron | 30.0% |
| !! | AAGAATTTGTTAGCACAGTA+GGG | + | chr1.2:46054407-46054426 | MS.gene065735:intron | 30.0% |
| !! | ACTCTAAAGGAGTATTATGA+AGG | - | chr1.2:46054450-46054469 | None:intergenic | 30.0% |
| !! | CTCTTTTGAGAATGGATAAA+GGG | + | chr1.2:46054082-46054101 | MS.gene065735:intron | 30.0% |
| !! | CTTATTTTCATAAGTACTCC+AGG | - | chr1.2:46052818-46052837 | None:intergenic | 30.0% |
| !! | GGTTTTACTACCTTTAAAAG+GGG | - | chr1.2:46052288-46052307 | None:intergenic | 30.0% |
| !! | TCTCTTTTGAGAATGGATAA+AGG | + | chr1.2:46054081-46054100 | MS.gene065735:intron | 30.0% |
| !! | TTCAGTACTGATGTTAATTG+AGG | + | chr1.2:46054997-46055016 | MS.gene065735:CDS | 30.0% |
| !!! | CCTTGTTTTGATTAAGCTAT+TGG | + | chr1.2:46053159-46053178 | MS.gene065735:intron | 30.0% |
| !!! | GTGTATTTTGACAACCATTT+TGG | + | chr1.2:46053907-46053926 | MS.gene065735:intron | 30.0% |
| !!! | TTTAAATCTGGCTTGGATTT+TGG | + | chr1.2:46053689-46053708 | MS.gene065735:intron | 30.0% |
| AACTTTGTAAAATGAGAGGG+TGG | + | chr1.2:46054294-46054313 | MS.gene065735:intron | 35.0% | |
| AATCAGCAGCAAACTATAGT+AGG | - | chr1.2:46053786-46053805 | None:intergenic | 35.0% | |
| ATAGAGCTTCTTCAAAGTGT+TGG | - | chr1.2:46053461-46053480 | None:intergenic | 35.0% | |
| ATAGCATACCTTAGTTGCAA+AGG | - | chr1.2:46054804-46054823 | None:intergenic | 35.0% | |
| CTGCAATAATTGTATTTGGC+GGG | + | chr1.2:46053503-46053522 | MS.gene065735:CDS | 35.0% | |
| GAACCAAACAAATTGTGATC+AGG | - | chr1.2:46054916-46054935 | None:intergenic | 35.0% | |
| GCATATATCGGCAACAATTA+GGG | - | chr1.2:46055336-46055355 | None:intergenic | 35.0% | |
| GCATTTCACTATTGATCCTT+GGG | + | chr1.2:46053711-46053730 | MS.gene065735:intron | 35.0% | |
| GGAAGAAAAGGAATAGATGA+TGG | - | chr1.2:46053119-46053138 | None:intergenic | 35.0% | |
| TAATGAGAAATGAGTATGGC+AGG | + | chr1.2:46053001-46053020 | MS.gene065735:intron | 35.0% | |
| TGCATATATCGGCAACAATT+AGG | - | chr1.2:46055337-46055356 | None:intergenic | 35.0% | |
| TTGAAGAAGCTCTATCTAAC+AGG | + | chr1.2:46053466-46053485 | MS.gene065735:CDS | 35.0% | |
| TTGAGCAACAAGAGAAAACA+AGG | + | chr1.2:46055029-46055048 | MS.gene065735:CDS | 35.0% | |
| TTTCTACACTGAAGTTGAAC+TGG | + | chr1.2:46055079-46055098 | MS.gene065735:intron | 35.0% | |
| ! | ACAAAGAGCTTTTAGTGAAG+AGG | + | chr1.2:46053061-46053080 | MS.gene065735:CDS | 35.0% |
| ! | AGCAACTTTTGCATCATTGA+AGG | + | chr1.2:46052489-46052508 | MS.gene065735:intron | 35.0% |
| ! | ATGCCTGATCACAATTTGTT+TGG | + | chr1.2:46054910-46054929 | MS.gene065735:intron | 35.0% |
| ! | CAAAGAGCTTTTAGTGAAGA+GGG | + | chr1.2:46053062-46053081 | MS.gene065735:CDS | 35.0% |
| ! | GCAACTTTTGCATCATTGAA+GGG | + | chr1.2:46052490-46052509 | MS.gene065735:intron | 35.0% |
| ! | GGCAAAGAAAATGGAGTTTT+TGG | - | chr1.2:46052267-46052286 | None:intergenic | 35.0% |
| ! | TAACTTCGGTGTGATTTCAT+TGG | - | chr1.2:46052372-46052391 | None:intergenic | 35.0% |
| ! | TAAGATATAAGCGGCTTGTT+TGG | - | chr1.2:46052949-46052968 | None:intergenic | 35.0% |
| ! | TAGAGCTTCTTCAAAGTGTT+GGG | - | chr1.2:46053460-46053479 | None:intergenic | 35.0% |
| ! | TATTCCTTTTCTTCCTCATG+TGG | + | chr1.2:46053124-46053143 | MS.gene065735:CDS | 35.0% |
| !! | AGAATTTGTTAGCACAGTAG+GGG | + | chr1.2:46054408-46054427 | MS.gene065735:intron | 35.0% |
| !! | CTAAAGGAGTATTATGAAGG+AGG | - | chr1.2:46054447-46054466 | None:intergenic | 35.0% |
| !! | GGAATAGATGATGGAATTTC+CGG | - | chr1.2:46053110-46053129 | None:intergenic | 35.0% |
| !! | GTATTCGAAATGAGAGCATT+TGG | + | chr1.2:46053387-46053406 | MS.gene065735:intron | 35.0% |
| !! | TTTTTGGTATGTGAAGGGAA+AGG | - | chr1.2:46052251-46052270 | None:intergenic | 35.0% |
| !!! | ATCCTTATTTTAATGGCAGC+TGG | + | chr1.2:46054719-46054738 | MS.gene065735:intron | 35.0% |
| !!! | ATGGAGTTTTTGGTATGTGA+AGG | - | chr1.2:46052257-46052276 | None:intergenic | 35.0% |
| !!! | GTTTTAAAACTCACCACATG+AGG | - | chr1.2:46053140-46053159 | None:intergenic | 35.0% |
| !!! | TGGAGTTTTTGGTATGTGAA+GGG | - | chr1.2:46052256-46052275 | None:intergenic | 35.0% |
| AAAGGTAGAATTGTGGAGGA+AGG | - | chr1.2:46052233-46052252 | None:intergenic | 40.0% | |
| AGAAATGAGTATGGCAGGTT+AGG | + | chr1.2:46053006-46053025 | MS.gene065735:intron | 40.0% | |
| ATCATTTGCTCTTGGAAAGG+AGG | - | chr1.2:46054206-46054225 | None:intergenic | 40.0% | |
| ATTAATCCGATTTCGGCATC+TGG | + | chr1.2:46055235-46055254 | MS.gene065735:CDS | 40.0% | |
| CAGAAAAGGATGCCACAATT+GGG | - | chr1.2:46054958-46054977 | None:intergenic | 40.0% | |
| CTACTTCAATCCGAAAAGCA+CGG | - | chr1.2:46053434-46053453 | None:intergenic | 40.0% | |
| CTCCAGCTGCCATTAAAATA+AGG | - | chr1.2:46054724-46054743 | None:intergenic | 40.0% | |
| GGCATTTCACTATTGATCCT+TGG | + | chr1.2:46053710-46053729 | MS.gene065735:intron | 40.0% | |
| GTAGAAACATACCAGTTCCA+AGG | - | chr1.2:46055066-46055085 | None:intergenic | 40.0% | |
| GTTCAAACATACACCACTTG+TGG | - | chr1.2:46055215-46055234 | None:intergenic | 40.0% | |
| TGAAGGGAAAGGTAGAATTG+TGG | - | chr1.2:46052240-46052259 | None:intergenic | 40.0% | |
| TGCATTTGCCTTTGCAACTA+AGG | + | chr1.2:46054793-46054812 | MS.gene065735:CDS | 40.0% | |
| TTTCATAAATCAGACCCCGA+AGG | - | chr1.2:46054497-46054516 | None:intergenic | 40.0% | |
| ! | TCAGGATTTTGTTCAGATGC+AGG | + | chr1.2:46052524-46052543 | MS.gene065735:CDS | 40.0% |
| ! | TGGGGTGCAAGTTTAGTTTA+AGG | + | chr1.2:46054143-46054162 | MS.gene065735:intron | 40.0% |
| ACAAAATCCTGAACCGTCTC+TGG | - | chr1.2:46052516-46052535 | None:intergenic | 45.0% | |
| AGGGAAAGGTAGAATTGTGG+AGG | - | chr1.2:46052237-46052256 | None:intergenic | 45.0% | |
| AGTATTATGAAGGAGGACCC+AGG | - | chr1.2:46054440-46054459 | None:intergenic | 45.0% | |
| CACAATTGGGTCAACTTGAC+TGG | - | chr1.2:46054945-46054964 | None:intergenic | 45.0% | |
| CCAGAAAAGGATGCCACAAT+TGG | - | chr1.2:46054959-46054978 | None:intergenic | 45.0% | |
| CTCACCACATGAGGAAGAAA+AGG | - | chr1.2:46053131-46053150 | None:intergenic | 45.0% | |
| CTGGAGCTGAAATTGGGTAT+AGG | + | chr1.2:46054738-46054757 | MS.gene065735:CDS | 45.0% | |
| GAGCTGAAATTGGGTATAGG+TGG | + | chr1.2:46054741-46054760 | MS.gene065735:CDS | 45.0% | |
| GGAAGATGCAAATGAGATGC+CGG | + | chr1.2:46053088-46053107 | MS.gene065735:CDS | 45.0% | |
| TATAGGTGGCACGTCATATG+AGG | + | chr1.2:46054755-46054774 | MS.gene065735:CDS | 45.0% | |
| TTTCCAGCACCAGAGCAATT+TGG | - | chr1.2:46055304-46055323 | None:intergenic | 45.0% | |
| TTTGGACACCTTGTCGTTGT+AGG | - | chr1.2:46055286-46055305 | None:intergenic | 45.0% | |
| ! | AAATTGCTCTGGTGCTGGAA+AGG | + | chr1.2:46055303-46055322 | MS.gene065735:CDS | 45.0% |
| ! | ACAAGGTGCAAGTATTGCCT+TGG | + | chr1.2:46055046-46055065 | MS.gene065735:CDS | 45.0% |
| ! | ACAAGGTGTCCAAATTGCTC+TGG | + | chr1.2:46055292-46055311 | MS.gene065735:CDS | 45.0% |
| ! | AGCTTTTAGTGAAGAGGGAG+AGG | + | chr1.2:46053067-46053086 | MS.gene065735:CDS | 45.0% |
| ! | ATTGTGGCATCCTTTTCTGG+TGG | + | chr1.2:46054959-46054978 | MS.gene065735:CDS | 45.0% |
| ! | CCAATTGTGGCATCCTTTTC+TGG | + | chr1.2:46054956-46054975 | MS.gene065735:CDS | 45.0% |
| ! | GAAGTACCAGATGCCGAAAT+CGG | - | chr1.2:46055244-46055263 | None:intergenic | 45.0% |
| ! | TGCAAGTATTGCCTTGGAAC+TGG | + | chr1.2:46055052-46055071 | MS.gene065735:CDS | 45.0% |
| ! | TTTTGTTCAGATGCAGGTGC+AGG | + | chr1.2:46052530-46052549 | MS.gene065735:CDS | 45.0% |
| !! | CAGTCAAGTTGACCCAATTG+TGG | + | chr1.2:46054943-46054962 | MS.gene065735:intron | 45.0% |
| !!! | AAAACTTTTTATTTTTTTAT+AGG | + | chr1.2:46054352-46054371 | MS.gene065735:intron | 5.0% |
| !!! | TTATAAAATTTGTAATTTTA+TGG | + | chr1.2:46055161-46055180 | MS.gene065735:intron | 5.0% |
| AATTGCGTGCTCTTCTCCAC+AGG | + | chr1.2:46052337-46052356 | MS.gene065735:CDS | 50.0% | |
| ATGGCAGCTGGAGCTGAAAT+TGG | + | chr1.2:46054731-46054750 | MS.gene065735:intron | 50.0% | |
| CACAGTAGGGGTCAAAACCT+GGG | + | chr1.2:46054420-46054439 | MS.gene065735:intron | 50.0% | |
| CATCATTGAAGGGCCAGAGA+CGG | + | chr1.2:46052500-46052519 | MS.gene065735:CDS | 50.0% | |
| CCATCTTCATCCCAGTGCAA+AGG | - | chr1.2:46055448-46055467 | None:intergenic | 50.0% | |
| CCTTTGCACTGGGATGAAGA+TGG | + | chr1.2:46055445-46055464 | MS.gene065735:CDS | 50.0% | |
| TACTTCTGTTAGACCCCTGC+AGG | + | chr1.2:46055258-46055277 | MS.gene065735:CDS | 50.0% | |
| TGCAGGTTCCTACAACGACA+AGG | + | chr1.2:46055275-46055294 | MS.gene065735:CDS | 50.0% | |
| TGGCAGCTGGAGCTGAAATT+GGG | + | chr1.2:46054732-46054751 | MS.gene065735:intron | 50.0% | |
| TGTCCAAATTGCTCTGGTGC+TGG | + | chr1.2:46055298-46055317 | MS.gene065735:CDS | 50.0% | |
| TGTCGTTGTAGGAACCTGCA+GGG | - | chr1.2:46055275-46055294 | None:intergenic | 50.0% | |
| TTGTCGTTGTAGGAACCTGC+AGG | - | chr1.2:46055276-46055295 | None:intergenic | 50.0% | |
| ! | GCGGTTTTCGTAAGCTATCC+TGG | + | chr1.2:46052797-46052816 | MS.gene065735:intron | 50.0% |
| !! | GGTATCGGTTGGGACTCTAA+AGG | - | chr1.2:46054463-46054482 | None:intergenic | 50.0% |
| !! | TCCTTTTCTGGTGGAGCAGT+TGG | + | chr1.2:46054968-46054987 | MS.gene065735:CDS | 50.0% |
| AAGGTGTACCCCAGCGGTAT+CGG | - | chr1.2:46054478-46054497 | None:intergenic | 55.0% | |
| ATACCGCTGGGGTACACCTT+CGG | + | chr1.2:46054478-46054497 | MS.gene065735:intron | 55.0% | |
| ATCCCAGTGCAAAGGCAGGT+TGG | - | chr1.2:46055440-46055459 | None:intergenic | 55.0% | |
| CTTCATCCCAGTGCAAAGGC+AGG | - | chr1.2:46055444-46055463 | None:intergenic | 55.0% | |
| GCACAGTAGGGGTCAAAACC+TGG | + | chr1.2:46054419-46054438 | MS.gene065735:intron | 55.0% | |
| GCCAACTGCTCCACCAGAAA+AGG | - | chr1.2:46054972-46054991 | None:intergenic | 55.0% | |
| GTCCAACCTGCCTTTGCACT+GGG | + | chr1.2:46055435-46055454 | MS.gene065735:CDS | 55.0% | |
| GTCGTTGTAGGAACCTGCAG+GGG | - | chr1.2:46055274-46055293 | None:intergenic | 55.0% | |
| TCATTGGAGCCTGCATCCTG+TGG | - | chr1.2:46052356-46052375 | None:intergenic | 55.0% | |
| TGCTCTTCTCCACAGGATGC+AGG | + | chr1.2:46052344-46052363 | MS.gene065735:CDS | 55.0% | |
| TGTCCAACCTGCCTTTGCAC+TGG | + | chr1.2:46055434-46055453 | MS.gene065735:CDS | 55.0% | |
| !! | CAGGTTACTTGGCTTGCGCT+CGG | + | chr1.2:46055185-46055204 | MS.gene065735:intron | 55.0% |
| AGAGTCCCAACCGATACCGC+TGG | + | chr1.2:46054465-46054484 | MS.gene065735:intron | 60.0% | |
| AGTCCCAACCGATACCGCTG+GGG | + | chr1.2:46054467-46054486 | MS.gene065735:intron | 60.0% | |
| GAGTCCCAACCGATACCGCT+GGG | + | chr1.2:46054466-46054485 | MS.gene065735:intron | 60.0% | |
| GGAGATTGCGTGTGCAGCAG+CGG | + | chr1.2:46053027-46053046 | MS.gene065735:CDS | 60.0% | |
| TACCGCTGGGGTACACCTTC+GGG | + | chr1.2:46054479-46054498 | MS.gene065735:intron | 60.0% | |
| TGAAGGGCCAGAGACGGTTC+AGG | + | chr1.2:46052506-46052525 | MS.gene065735:CDS | 60.0% | |
| !! | GTACCCCAGCGGTATCGGTT+GGG | - | chr1.2:46054473-46054492 | None:intergenic | 60.0% |
| !! | TGCGCTCGGTGTTCCACAAG+TGG | + | chr1.2:46055199-46055218 | MS.gene065735:CDS | 60.0% |
| !! | TGGCGGGCTTATTGCACCGA+CGG | + | chr1.2:46053519-46053538 | MS.gene065735:CDS | 60.0% |
| !! | TGTACCCCAGCGGTATCGGT+TGG | - | chr1.2:46054474-46054493 | None:intergenic | 60.0% |
| ACCGCTGGGGTACACCTTCG+GGG | + | chr1.2:46054480-46054499 | MS.gene065735:intron | 65.0% | |
| ! | ACCCCGAAGGTGTACCCCAG+CGG | - | chr1.2:46054484-46054503 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 46052215 | 46055505 | 46052215 | ID=MS.gene065735 |
| chr1.2 | mRNA | 46052215 | 46055505 | 46052215 | ID=MS.gene065735.t1;Parent=MS.gene065735 |
| chr1.2 | exon | 46052215 | 46052387 | 46052215 | ID=MS.gene065735.t1.exon1;Parent=MS.gene065735.t1 |
| chr1.2 | CDS | 46052215 | 46052387 | 46052215 | ID=cds.MS.gene065735.t1;Parent=MS.gene065735.t1 |
| chr1.2 | exon | 46052491 | 46052608 | 46052491 | ID=MS.gene065735.t1.exon2;Parent=MS.gene065735.t1 |
| chr1.2 | CDS | 46052491 | 46052608 | 46052491 | ID=cds.MS.gene065735.t1;Parent=MS.gene065735.t1 |
| chr1.2 | exon | 46053023 | 46053145 | 46053023 | ID=MS.gene065735.t1.exon3;Parent=MS.gene065735.t1 |
| chr1.2 | CDS | 46053023 | 46053145 | 46053023 | ID=cds.MS.gene065735.t1;Parent=MS.gene065735.t1 |
| chr1.2 | exon | 46053454 | 46053540 | 46053454 | ID=MS.gene065735.t1.exon4;Parent=MS.gene065735.t1 |
| chr1.2 | CDS | 46053454 | 46053540 | 46053454 | ID=cds.MS.gene065735.t1;Parent=MS.gene065735.t1 |
| chr1.2 | exon | 46054738 | 46054814 | 46054738 | ID=MS.gene065735.t1.exon5;Parent=MS.gene065735.t1 |
| chr1.2 | CDS | 46054738 | 46054814 | 46054738 | ID=cds.MS.gene065735.t1;Parent=MS.gene065735.t1 |
| chr1.2 | exon | 46054946 | 46055073 | 46054946 | ID=MS.gene065735.t1.exon6;Parent=MS.gene065735.t1 |
| chr1.2 | CDS | 46054946 | 46055073 | 46054946 | ID=cds.MS.gene065735.t1;Parent=MS.gene065735.t1 |
| chr1.2 | exon | 46055188 | 46055324 | 46055188 | ID=MS.gene065735.t1.exon7;Parent=MS.gene065735.t1 |
| chr1.2 | CDS | 46055188 | 46055324 | 46055188 | ID=cds.MS.gene065735.t1;Parent=MS.gene065735.t1 |
| chr1.2 | exon | 46055428 | 46055505 | 46055428 | ID=MS.gene065735.t1.exon8;Parent=MS.gene065735.t1 |
| chr1.2 | CDS | 46055428 | 46055505 | 46055428 | ID=cds.MS.gene065735.t1;Parent=MS.gene065735.t1 |
| Gene Sequence |
| Protein sequence |
