Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067074.t1 | XP_003601878.1 | 88 | 526 | 21 | 3 | 1 | 486 | 1 | 524 | 4.20E-258 | 900.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067074.t1 | A2WY46 | 35.9 | 523 | 204 | 12 | 46 | 448 | 97 | 608 | 2.3e-71 | 271.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067074.t1 | G7J336 | 88.0 | 526 | 21 | 3 | 1 | 486 | 1 | 524 | 3.0e-258 | 900.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene067074 | 0.814293 | 1.66E-51 | -1.69E-46 |
| MS.gene050338 | MS.gene067074 | 0.808926 | 2.44E-50 | -1.69E-46 |
| MS.gene051914 | MS.gene067074 | 0.808869 | 2.51E-50 | -1.69E-46 |
| MS.gene052308 | MS.gene067074 | 0.814217 | 1.72E-51 | -1.69E-46 |
| MS.gene052367 | MS.gene067074 | 0.809839 | 1.55E-50 | -1.69E-46 |
| MS.gene053173 | MS.gene067074 | 0.818223 | 2.19E-52 | -1.69E-46 |
| MS.gene053348 | MS.gene067074 | 0.814028 | 1.90E-51 | -1.69E-46 |
| MS.gene054551 | MS.gene067074 | 0.813371 | 2.65E-51 | -1.69E-46 |
| MS.gene054593 | MS.gene067074 | 0.816392 | 5.66E-52 | -1.69E-46 |
| MS.gene054614 | MS.gene067074 | 0.80296 | 4.38E-49 | -1.69E-46 |
| MS.gene054633 | MS.gene067074 | 0.82099 | 5.12E-53 | -1.69E-46 |
| MS.gene055251 | MS.gene067074 | 0.807139 | 5.85E-50 | -1.69E-46 |
| MS.gene055578 | MS.gene067074 | 0.800196 | 1.61E-48 | -1.69E-46 |
| MS.gene056041 | MS.gene067074 | 0.802495 | 5.46E-49 | -1.69E-46 |
| MS.gene05640 | MS.gene067074 | 0.829626 | 4.63E-55 | -1.69E-46 |
| MS.gene056526 | MS.gene067074 | 0.811767 | 5.94E-51 | -1.69E-46 |
| MS.gene056528 | MS.gene067074 | 0.805609 | 1.23E-49 | -1.69E-46 |
| MS.gene05652 | MS.gene067074 | 0.803002 | 4.29E-49 | -1.69E-46 |
| MS.gene057367 | MS.gene067074 | 0.804488 | 2.11E-49 | -1.69E-46 |
| MS.gene058382 | MS.gene067074 | 0.804989 | 1.66E-49 | -1.69E-46 |
| MS.gene058827 | MS.gene067074 | 0.817336 | 3.48E-52 | -1.69E-46 |
| MS.gene058853 | MS.gene067074 | 0.827554 | 1.47E-54 | -1.69E-46 |
| MS.gene05926 | MS.gene067074 | 0.838272 | 3.17E-57 | -1.69E-46 |
| MS.gene060473 | MS.gene067074 | 0.80795 | 3.93E-50 | -1.69E-46 |
| MS.gene060565 | MS.gene067074 | 0.806053 | 9.92E-50 | -1.69E-46 |
| MS.gene06093 | MS.gene067074 | 0.838848 | 2.25E-57 | -1.69E-46 |
| MS.gene061260 | MS.gene067074 | 0.817082 | 3.96E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067074.t1 | MTR_3g086380 | 88.783 | 526 | 17 | 3 | 1 | 486 | 1 | 524 | 0.0 | 916 |
| MS.gene067074.t1 | MTR_3g448370 | 47.159 | 176 | 77 | 5 | 248 | 419 | 642 | 805 | 6.01e-37 | 145 |
| MS.gene067074.t1 | MTR_3g448370 | 47.159 | 176 | 77 | 5 | 248 | 419 | 645 | 808 | 6.15e-37 | 145 |
| MS.gene067074.t1 | MTR_3g448370 | 47.159 | 176 | 77 | 5 | 248 | 419 | 540 | 703 | 6.63e-37 | 145 |
| MS.gene067074.t1 | MTR_3g448370 | 47.159 | 176 | 77 | 5 | 248 | 419 | 656 | 819 | 7.81e-37 | 145 |
| MS.gene067074.t1 | MTR_3g448370 | 47.514 | 181 | 78 | 6 | 244 | 419 | 640 | 808 | 1.04e-36 | 144 |
| MS.gene067074.t1 | MTR_2g049640 | 40.278 | 216 | 104 | 7 | 248 | 453 | 648 | 848 | 1.11e-35 | 141 |
| MS.gene067074.t1 | MTR_8g100160 | 46.575 | 146 | 66 | 1 | 293 | 438 | 795 | 928 | 1.23e-35 | 141 |
| MS.gene067074.t1 | MTR_8g100160 | 46.575 | 146 | 66 | 1 | 293 | 438 | 799 | 932 | 1.23e-35 | 141 |
| MS.gene067074.t1 | MTR_7g020950 | 43.243 | 185 | 80 | 5 | 254 | 435 | 555 | 717 | 3.08e-35 | 140 |
| MS.gene067074.t1 | MTR_7g020950 | 43.243 | 185 | 80 | 5 | 254 | 435 | 639 | 801 | 3.70e-35 | 140 |
| MS.gene067074.t1 | MTR_3g098620 | 46.575 | 146 | 66 | 1 | 293 | 438 | 791 | 924 | 5.04e-35 | 139 |
| MS.gene067074.t1 | MTR_3g098620 | 47.857 | 140 | 59 | 2 | 293 | 432 | 791 | 916 | 3.48e-34 | 137 |
| MS.gene067074.t1 | MTR_3g098620 | 47.857 | 140 | 59 | 2 | 293 | 432 | 791 | 916 | 5.43e-34 | 136 |
| MS.gene067074.t1 | MTR_0166s0040 | 43.382 | 136 | 71 | 1 | 296 | 425 | 41 | 176 | 1.20e-30 | 118 |
| MS.gene067074.t1 | MTR_5g059640 | 43.382 | 136 | 71 | 1 | 296 | 425 | 41 | 176 | 1.66e-30 | 117 |
| MS.gene067074.t1 | MTR_4g071310 | 46.043 | 139 | 72 | 2 | 290 | 425 | 181 | 319 | 8.26e-30 | 119 |
| MS.gene067074.t1 | MTR_5g059620 | 42.647 | 136 | 71 | 2 | 296 | 425 | 73 | 207 | 4.69e-29 | 114 |
| MS.gene067074.t1 | MTR_0166s0030 | 42.647 | 136 | 71 | 2 | 296 | 425 | 73 | 207 | 2.72e-28 | 113 |
| MS.gene067074.t1 | MTR_7g118210 | 40.252 | 159 | 64 | 3 | 281 | 438 | 556 | 684 | 8.27e-28 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067074.t1 | AT3G26120 | 41.767 | 498 | 203 | 14 | 42 | 465 | 101 | 585 | 2.03e-107 | 332 |
| MS.gene067074.t1 | AT1G67770 | 38.652 | 445 | 184 | 13 | 42 | 435 | 75 | 481 | 4.19e-84 | 269 |
| MS.gene067074.t1 | AT5G61960 | 50.000 | 148 | 58 | 3 | 293 | 438 | 734 | 867 | 4.63e-38 | 149 |
| MS.gene067074.t1 | AT5G61960 | 50.000 | 148 | 58 | 3 | 293 | 438 | 734 | 867 | 4.63e-38 | 149 |
| MS.gene067074.t1 | AT5G61960 | 50.000 | 148 | 58 | 3 | 293 | 438 | 734 | 867 | 4.63e-38 | 149 |
| MS.gene067074.t1 | AT5G61960 | 50.000 | 148 | 58 | 3 | 293 | 438 | 734 | 867 | 4.63e-38 | 149 |
| MS.gene067074.t1 | AT5G61960 | 50.000 | 148 | 58 | 3 | 293 | 438 | 734 | 867 | 4.63e-38 | 149 |
| MS.gene067074.t1 | AT5G61960 | 50.000 | 148 | 58 | 3 | 293 | 438 | 734 | 867 | 4.63e-38 | 149 |
| MS.gene067074.t1 | AT5G61960 | 50.000 | 148 | 58 | 3 | 293 | 438 | 734 | 867 | 4.63e-38 | 149 |
| MS.gene067074.t1 | AT5G61960 | 50.000 | 148 | 58 | 3 | 293 | 438 | 741 | 874 | 4.76e-38 | 149 |
| MS.gene067074.t1 | AT5G61960 | 50.000 | 148 | 58 | 3 | 293 | 438 | 741 | 874 | 4.76e-38 | 149 |
| MS.gene067074.t1 | AT5G61960 | 50.000 | 148 | 58 | 3 | 293 | 438 | 741 | 874 | 4.76e-38 | 149 |
| MS.gene067074.t1 | AT5G61960 | 50.000 | 148 | 58 | 3 | 293 | 438 | 741 | 874 | 4.76e-38 | 149 |
| MS.gene067074.t1 | AT5G07290 | 48.649 | 148 | 60 | 3 | 293 | 438 | 739 | 872 | 7.54e-37 | 145 |
| MS.gene067074.t1 | AT1G37140 | 49.242 | 132 | 59 | 2 | 295 | 425 | 83 | 207 | 9.25e-35 | 130 |
| MS.gene067074.t1 | AT1G29400 | 47.482 | 139 | 61 | 1 | 286 | 424 | 643 | 769 | 7.34e-34 | 136 |
| MS.gene067074.t1 | AT1G29400 | 47.482 | 139 | 61 | 1 | 286 | 424 | 643 | 769 | 7.34e-34 | 136 |
| MS.gene067074.t1 | AT1G29400 | 47.482 | 139 | 61 | 1 | 286 | 424 | 643 | 769 | 7.34e-34 | 136 |
| MS.gene067074.t1 | AT5G07930 | 35.912 | 181 | 108 | 4 | 257 | 436 | 100 | 273 | 1.57e-28 | 114 |
| MS.gene067074.t1 | AT5G07930 | 35.912 | 181 | 108 | 4 | 257 | 436 | 100 | 273 | 1.72e-28 | 114 |
| MS.gene067074.t1 | AT5G07930 | 36.691 | 139 | 83 | 2 | 257 | 394 | 100 | 234 | 6.70e-24 | 101 |
| MS.gene067074.t1 | AT2G42890 | 41.727 | 139 | 68 | 3 | 281 | 418 | 664 | 790 | 1.22e-23 | 105 |
| MS.gene067074.t1 | AT2G42890 | 41.727 | 139 | 68 | 3 | 281 | 418 | 651 | 777 | 1.36e-23 | 105 |
| MS.gene067074.t1 | AT2G42890 | 41.727 | 139 | 68 | 3 | 281 | 418 | 651 | 777 | 1.36e-23 | 105 |
| MS.gene067074.t1 | AT1G37140 | 45.349 | 86 | 46 | 1 | 341 | 425 | 91 | 176 | 1.37e-17 | 81.6 |
Find 159 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGGAGCAGCAGGGTTTA+AGG | 0.138147 | 3.4:-80545000 | None:intergenic |
| GGATTAGAATGAAATGATTT+TGG | 0.200138 | 3.4:-80545875 | None:intergenic |
| GTAGCGGCGTGGGGAAAATT+TGG | 0.206226 | 3.4:-80545346 | None:intergenic |
| AATGATTATAGGAGCAATTA+AGG | 0.224880 | 3.4:+80545715 | MS.gene067074:intron |
| TCTTTACGTAGGTCAGTTTC+AGG | 0.224982 | 3.4:-80545161 | None:intergenic |
| CGGCGGCGGCGTGACGGCGC+AGG | 0.232398 | 3.4:-80545084 | None:intergenic |
| TTACTAAACTCAATAGTAAT+TGG | 0.237341 | 3.4:-80545851 | None:intergenic |
| GGATTAAGGTTGAAATTAAA+TGG | 0.265370 | 3.4:-80545920 | None:intergenic |
| CGTAAAGACCTTTCGGCTTT+CGG | 0.268540 | 3.4:+80545176 | MS.gene067074:CDS |
| AACAAATGCAACGTGGGATA+TGG | 0.304008 | 3.4:+80546758 | MS.gene067074:CDS |
| GTCAGTTTCAGGGGTGGGAG+GGG | 0.315198 | 3.4:-80545150 | None:intergenic |
| GTTTCAGGGGTGGGAGGGGC+AGG | 0.322616 | 3.4:-80545146 | None:intergenic |
| GGGAAAGCGCTTGGAGTTGG+AGG | 0.325471 | 3.4:+80546110 | MS.gene067074:CDS |
| GTTCAAAGTAGAGAGAGTTT+TGG | 0.328298 | 3.4:+80546088 | MS.gene067074:CDS |
| TTGAATGGCAAAGAGATTAA+TGG | 0.333735 | 3.4:+80545824 | MS.gene067074:CDS |
| GCGGGGAAGGAGGTGGATTA+AGG | 0.334836 | 3.4:-80545934 | None:intergenic |
| CCACAATAGGATTGGTTCAA+TGG | 0.341291 | 3.4:+80546027 | MS.gene067074:CDS |
| TTTATCATGAGAGTCGTTCT+AGG | 0.352179 | 3.4:-80546199 | None:intergenic |
| GGTATGGGAATGTAGTTGTT+TGG | 0.353379 | 3.4:-80545029 | None:intergenic |
| ATAAGAGTTTGACATTTAAC+CGG | 0.373048 | 3.4:+80545999 | MS.gene067074:CDS |
| TGGAAGAAGGTCAAGATCAT+AGG | 0.376422 | 3.4:+80547874 | MS.gene067074:CDS |
| AGGTCAGTTTCAGGGGTGGG+AGG | 0.380294 | 3.4:-80545152 | None:intergenic |
| GGCTGCGGAGGTAGCGGCGT+GGG | 0.384795 | 3.4:-80545356 | None:intergenic |
| ATTACTTACTTAAAATCTAT+AGG | 0.386154 | 3.4:-80546446 | None:intergenic |
| GGGTTAAACTCTGGAGCAGC+AGG | 0.390627 | 3.4:-80545008 | None:intergenic |
| GTGACGGCGCAGGGTGGGTA+GGG | 0.391775 | 3.4:-80545074 | None:intergenic |
| TTAACCGGGTAAACCACAAT+AGG | 0.393493 | 3.4:+80546014 | MS.gene067074:CDS |
| CCGCTACCTCCGCAGCCGCC+AGG | 0.400631 | 3.4:+80545362 | MS.gene067074:CDS |
| ATGTTCCCCGCCACTGGAAT+TGG | 0.407737 | 3.4:-80547813 | None:intergenic |
| TAGCGGCGTGGGGAAAATTT+GGG | 0.411228 | 3.4:-80545345 | None:intergenic |
| CGTGACGGCGCAGGGTGGGT+AGG | 0.413677 | 3.4:-80545075 | None:intergenic |
| GTATGGGAATGTAGTTGTTT+GGG | 0.413782 | 3.4:-80545028 | None:intergenic |
| GCGGGGAACATGCTACAAAT+TGG | 0.413975 | 3.4:+80547825 | MS.gene067074:CDS |
| GAGAATAGAGCGGGTGGGTA+TGG | 0.419463 | 3.4:-80545117 | None:intergenic |
| TGACCTACGTAAAGACCTTT+CGG | 0.422014 | 3.4:+80545169 | MS.gene067074:CDS |
| GGCGCAGGGTGGGTAGGGGT+AGG | 0.424004 | 3.4:-80545069 | None:intergenic |
| TGACGGCGCAGGGTGGGTAG+GGG | 0.432249 | 3.4:-80545073 | None:intergenic |
| GGCGGCGGCGTGACGGCGCA+GGG | 0.433167 | 3.4:-80545083 | None:intergenic |
| AAAGCGCTTGGAGTTGGAGG+GGG | 0.435867 | 3.4:+80546113 | MS.gene067074:CDS |
| GGGTGGGAGGGGCAGGACTA+AGG | 0.436139 | 3.4:-80545139 | None:intergenic |
| CGCCGTCGCGGGGAAGGAGG+TGG | 0.436349 | 3.4:-80545941 | None:intergenic |
| CACAATAGGATTGGTTCAAT+GGG | 0.438115 | 3.4:+80546028 | MS.gene067074:CDS |
| GGCCTTCCAGCACCAACATT+GGG | 0.443227 | 3.4:+80546826 | MS.gene067074:CDS |
| CGACATAAGAGATGCTGAAA+AGG | 0.443358 | 3.4:+80545790 | MS.gene067074:CDS |
| AAAGACGGACCTGTATTTGT+TGG | 0.443856 | 3.4:-80546230 | None:intergenic |
| CTTTACGTAGGTCAGTTTCA+GGG | 0.451037 | 3.4:-80545160 | None:intergenic |
| AAGACGGACCTGTATTTGTT+GGG | 0.452268 | 3.4:-80546229 | None:intergenic |
| TGGTTCAATGGGTTCATTGA+AGG | 0.454062 | 3.4:+80546039 | MS.gene067074:CDS |
| ACTCACATACGCAAGAGTTC+AGG | 0.454877 | 3.4:+80546877 | MS.gene067074:CDS |
| ACAAAGTCATAGGAGGATAA+AGG | 0.456334 | 3.4:-80546416 | None:intergenic |
| GCGGCGTGACGGCGCAGGGT+GGG | 0.456423 | 3.4:-80545079 | None:intergenic |
| AAAACATACCCAACAAATAC+AGG | 0.458427 | 3.4:+80546221 | MS.gene067074:CDS |
| TGTAGCATGTTCCCCGCCAC+TGG | 0.459934 | 3.4:-80547819 | None:intergenic |
| CGTAGGTCAGTTTCAGGGGT+GGG | 0.460430 | 3.4:-80545155 | None:intergenic |
| GAAGTTACTGTTGAATATGC+TGG | 0.460681 | 3.4:+80546349 | MS.gene067074:CDS |
| GTGGAGAAAATCGCCGTCGC+GGG | 0.461953 | 3.4:-80545952 | None:intergenic |
| GGTCAGTTTCAGGGGTGGGA+GGG | 0.466540 | 3.4:-80545151 | None:intergenic |
| ATACCGACGGCGACTGGTAT+GGG | 0.467858 | 3.4:-80545044 | None:intergenic |
| CTTATTAGAGATGTAAGCAT+TGG | 0.469382 | 3.4:-80545897 | None:intergenic |
| GAAAGCGCTTGGAGTTGGAG+GGG | 0.473295 | 3.4:+80546112 | MS.gene067074:CDS |
| GGGATACACCATGGAAGAAA+AGG | 0.479864 | 3.4:+80545744 | MS.gene067074:CDS |
| ACACGCAGAGACGGCGTTTG+CGG | 0.480194 | 3.4:+80545268 | MS.gene067074:CDS |
| AATAGAGCGGGTGGGTATGG+TGG | 0.480624 | 3.4:-80545114 | None:intergenic |
| TTATTAGAGATGTAAGCATT+GGG | 0.483182 | 3.4:-80545896 | None:intergenic |
| TTGGGGAAAGCGCTTGGAGT+TGG | 0.484284 | 3.4:+80546107 | MS.gene067074:CDS |
| AGGAAGGTACACAAAGTCAT+AGG | 0.485708 | 3.4:-80546426 | None:intergenic |
| GCGACGAGACCTGGCGGCTG+CGG | 0.486187 | 3.4:-80545371 | None:intergenic |
| CCTGGCGGCTGCGGAGGTAG+CGG | 0.489495 | 3.4:-80545362 | None:intergenic |
| CTACTTTGAACTCTAACAAA+AGG | 0.492457 | 3.4:-80546076 | None:intergenic |
| GCGCAGGGTGGGTAGGGGTA+GGG | 0.493121 | 3.4:-80545068 | None:intergenic |
| GGCACACCGGCGACGAGACC+TGG | 0.493166 | 3.4:-80545380 | None:intergenic |
| AATACCGACGGCGACTGGTA+TGG | 0.494952 | 3.4:-80545045 | None:intergenic |
| TAGTTGTTTGGGTTAAACTC+TGG | 0.495392 | 3.4:-80545017 | None:intergenic |
| AGACCTCCCAATGTTGGTGC+TGG | 0.498744 | 3.4:-80546832 | None:intergenic |
| CTCAAAGTTCCCGTGTGAGA+TGG | 0.501576 | 3.4:+80547734 | MS.gene067074:CDS |
| CAATCCTATTGTGGTTTACC+CGG | 0.502060 | 3.4:-80546018 | None:intergenic |
| TAGGGAATACCGACGGCGAC+TGG | 0.502108 | 3.4:-80545050 | None:intergenic |
| ACGGAGCCAATTCCAGTGGC+GGG | 0.502691 | 3.4:+80547807 | MS.gene067074:CDS |
| GGCGGCGTGACGGCGCAGGG+TGG | 0.509244 | 3.4:-80545080 | None:intergenic |
| TAGATGCGGCGGCGGCGTGA+CGG | 0.510053 | 3.4:-80545090 | None:intergenic |
| GGAAGAAGGTCAAGATCATA+GGG | 0.510176 | 3.4:+80547875 | MS.gene067074:CDS |
| AAGGCTTTGAAAGAATTGAA+TGG | 0.513360 | 3.4:+80545809 | MS.gene067074:CDS |
| GCTGCGGAGGTAGCGGCGTG+GGG | 0.515082 | 3.4:-80545355 | None:intergenic |
| GAAAATCGCCGTCGCGGGGA+AGG | 0.520245 | 3.4:-80545947 | None:intergenic |
| GGTTCAATGGGTTCATTGAA+GGG | 0.524979 | 3.4:+80546040 | MS.gene067074:CDS |
| TAGAATCTTAGCGTTGCCTC+AGG | 0.525923 | 3.4:-80546800 | None:intergenic |
| ACGAGACCTGGCGGCTGCGG+AGG | 0.526752 | 3.4:-80545368 | None:intergenic |
| ACGAAATGAGTCCGTTTGAA+CGG | 0.527752 | 3.4:-80545210 | None:intergenic |
| CCATTGAACCAATCCTATTG+TGG | 0.528406 | 3.4:-80546027 | None:intergenic |
| AGGCCTTCCAGCACCAACAT+TGG | 0.531003 | 3.4:+80546825 | MS.gene067074:CDS |
| TAGGAGCAATTAAGGAAGTG+AGG | 0.533444 | 3.4:+80545723 | MS.gene067074:intron |
| CGAAGTCAGAGCCGTTCAAA+CGG | 0.533758 | 3.4:+80545199 | MS.gene067074:CDS |
| CGGGTAAACCACAATAGGAT+TGG | 0.535306 | 3.4:+80546019 | MS.gene067074:CDS |
| CTCCCAATGTTGGTGCTGGA+AGG | 0.535713 | 3.4:-80546828 | None:intergenic |
| CAGCCGCCAGGTCTCGTCGC+CGG | 0.539793 | 3.4:+80545374 | MS.gene067074:CDS |
| TGCAATGAGCAGCTAGGCGA+CGG | 0.544239 | 3.4:+80546389 | MS.gene067074:CDS |
| GGAAAGCGCTTGGAGTTGGA+GGG | 0.544494 | 3.4:+80546111 | MS.gene067074:CDS |
| AGGAGCAATTAAGGAAGTGA+GGG | 0.556032 | 3.4:+80545724 | MS.gene067074:intron |
| TAAGAGTTTGACATTTAACC+GGG | 0.558889 | 3.4:+80546000 | MS.gene067074:CDS |
| ATGGTGGATAGATGCGGCGG+CGG | 0.559637 | 3.4:-80545098 | None:intergenic |
| ACGTAGGTCAGTTTCAGGGG+TGG | 0.561271 | 3.4:-80545156 | None:intergenic |
| AAAATTTGGGAATAAGAAAG+AGG | 0.561489 | 3.4:-80545332 | None:intergenic |
| AATCGCCGTCGCGGGGAAGG+AGG | 0.565397 | 3.4:-80545944 | None:intergenic |
| GTAGCTGATGAGATGGAAGA+AGG | 0.569726 | 3.4:+80547861 | MS.gene067074:CDS |
| GTCAATTGTTTCCCATCTCG+AGG | 0.569995 | 3.4:-80547786 | None:intergenic |
| TTTACGTAGGTCAGTTTCAG+GGG | 0.571001 | 3.4:-80545159 | None:intergenic |
| GAAGGTCAAGATCATAGGGT+AGG | 0.572001 | 3.4:+80547879 | MS.gene067074:CDS |
| AATTGTGGTGAATGAGGGCG+TGG | 0.572208 | 3.4:-80545971 | None:intergenic |
| CGGCTGCGGAGGTAGCGGCG+TGG | 0.572442 | 3.4:-80545357 | None:intergenic |
| CAAGATCATAGGGTAGGTAG+TGG | 0.577368 | 3.4:+80547885 | MS.gene067074:CDS |
| TGAGATAATTGTGGTGAATG+AGG | 0.579205 | 3.4:-80545977 | None:intergenic |
| AGTTAAAGACCTCCCAATGT+TGG | 0.586318 | 3.4:-80546838 | None:intergenic |
| CTTACTTAAAATCTATAGGA+AGG | 0.588507 | 3.4:-80546442 | None:intergenic |
| TGATCTTAGACACGCAGAGA+CGG | 0.593601 | 3.4:+80545259 | MS.gene067074:CDS |
| GACGGAGCCAATTCCAGTGG+CGG | 0.594560 | 3.4:+80547806 | MS.gene067074:CDS |
| GAGATAATTGTGGTGAATGA+GGG | 0.596266 | 3.4:-80545976 | None:intergenic |
| AATACGCAGCACAGAGGACG+TGG | 0.596568 | 3.4:-80545304 | None:intergenic |
| GATCATAGGGTAGGTAGTGG+TGG | 0.598738 | 3.4:+80547888 | MS.gene067074:CDS |
| TCCATCTCATCAGCTACAGA+AGG | 0.601752 | 3.4:-80547855 | None:intergenic |
| AGGACTAAGGAGAATAGAGC+GGG | 0.604231 | 3.4:-80545126 | None:intergenic |
| ATCCACCTCCTTCCCCGCGA+CGG | 0.605475 | 3.4:+80545939 | MS.gene067074:CDS |
| TGGAGAAAATCGCCGTCGCG+GGG | 0.607343 | 3.4:-80545951 | None:intergenic |
| AAATTTGGGAATAAGAAAGA+GGG | 0.608481 | 3.4:-80545331 | None:intergenic |
| AGATAATGCTCCATCTCACA+CGG | 0.611046 | 3.4:-80547744 | None:intergenic |
| GTGGGTATGGTGGATAGATG+CGG | 0.612880 | 3.4:-80545104 | None:intergenic |
| TCGAGATGGGAAACAATTGA+CGG | 0.613818 | 3.4:+80547788 | MS.gene067074:CDS |
| TGACTTCGCCGAAAGCCGAA+AGG | 0.617073 | 3.4:-80545184 | None:intergenic |
| TCCTTCTGTAGCTGATGAGA+TGG | 0.622229 | 3.4:+80547854 | MS.gene067074:CDS |
| CGTGGAGAAAATCGCCGTCG+CGG | 0.622679 | 3.4:-80545953 | None:intergenic |
| GTACACTGCAATGAGCAGCT+AGG | 0.623158 | 3.4:+80546383 | MS.gene067074:CDS |
| ACTAAGGAGAATAGAGCGGG+TGG | 0.623589 | 3.4:-80545123 | None:intergenic |
| CGAGGTGGTGAAAACACCAC+TGG | 0.627538 | 3.4:-80547768 | None:intergenic |
| GTTCATTGAAGGGTGAAGAG+AGG | 0.627589 | 3.4:+80546050 | MS.gene067074:CDS |
| GAACTCTTGCGTATGTGAGT+TGG | 0.629637 | 3.4:-80546874 | None:intergenic |
| AAGGTACACAAAGTCATAGG+AGG | 0.633001 | 3.4:-80546423 | None:intergenic |
| GGTTAAACTCTGGAGCAGCA+GGG | 0.635313 | 3.4:-80545007 | None:intergenic |
| CGGAGCCAATTCCAGTGGCG+GGG | 0.637866 | 3.4:+80547808 | MS.gene067074:CDS |
| TATAGGAACAAATGCAACGT+GGG | 0.641721 | 3.4:+80546752 | MS.gene067074:intron |
| GGCAACGCTAAGATTCTACA+AGG | 0.648560 | 3.4:+80546805 | MS.gene067074:CDS |
| AGGAAGTGAGGGATACACCA+TGG | 0.653479 | 3.4:+80545735 | MS.gene067074:CDS |
| AATTGTTTCCCATCTCGAGG+TGG | 0.655393 | 3.4:-80547783 | None:intergenic |
| CAAACGGACTCATTTCGTAA+CGG | 0.656925 | 3.4:+80545215 | MS.gene067074:CDS |
| CTTCCAGCACCAACATTGGG+AGG | 0.657486 | 3.4:+80546829 | MS.gene067074:CDS |
| CTAAGGAGAATAGAGCGGGT+GGG | 0.672614 | 3.4:-80545122 | None:intergenic |
| TGTGAATATGACATCTCCTG+AGG | 0.673075 | 3.4:+80546784 | MS.gene067074:CDS |
| ATTCCCATACCAGTCGCCGT+CGG | 0.681084 | 3.4:+80545041 | MS.gene067074:CDS |
| AAACTCTTATGAGATAATTG+TGG | 0.683374 | 3.4:-80545986 | None:intergenic |
| TCTAGGATCAGATTCAACAA+TGG | 0.693384 | 3.4:-80546182 | None:intergenic |
| AAGCCGAAAGGTCTTTACGT+AGG | 0.700365 | 3.4:-80545172 | None:intergenic |
| CAGGACTAAGGAGAATAGAG+CGG | 0.701567 | 3.4:-80545127 | None:intergenic |
| GATAATGCTCCATCTCACAC+GGG | 0.708028 | 3.4:-80547743 | None:intergenic |
| ATTGACGGAGCCAATTCCAG+TGG | 0.712659 | 3.4:+80547803 | MS.gene067074:CDS |
| GATGGAGCATTATCTGCCAG+TGG | 0.712737 | 3.4:+80547752 | MS.gene067074:CDS |
| ACACCGGCGACGAGACCTGG+CGG | 0.714164 | 3.4:-80545377 | None:intergenic |
| GGTATGGTGGATAGATGCGG+CGG | 0.718859 | 3.4:-80545101 | None:intergenic |
| ATATAGGAACAAATGCAACG+TGG | 0.745597 | 3.4:+80546751 | MS.gene067074:intron |
| GGTTGAAATACGCAGCACAG+AGG | 0.761263 | 3.4:-80545310 | None:intergenic |
| GTAGGGGTAGGGAATACCGA+CGG | 0.774683 | 3.4:-80545057 | None:intergenic |
| GCTCATTGCAGTGTACACAG+TGG | 0.859735 | 3.4:-80546376 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTAAAAATATAT+TGG | - | chr3.4:80547511-80547530 | None:intergenic | 0.0% |
| !! | AAATAATATATATAATGTAG+TGG | - | chr3.4:80546947-80546966 | None:intergenic | 10.0% |
| !! | TACATAATAATAAAATAATG+TGG | - | chr3.4:80546681-80546700 | None:intergenic | 10.0% |
| !!! | AAGTATTAATTTTTGTAAAT+TGG | - | chr3.4:80547384-80547403 | None:intergenic | 10.0% |
| !!! | AGTATTAATTTTTGTAAATT+GGG | - | chr3.4:80547383-80547402 | None:intergenic | 10.0% |
| !!! | ATTTTGTTTTTAATGATTAT+AGG | + | chr3.4:80545704-80545723 | MS.gene067074:intron | 10.0% |
| !!! | CTACATTATATATATTATTT+TGG | + | chr3.4:80546947-80546966 | MS.gene067074:intron | 10.0% |
| !!! | TGTATTTTTATTTATGAAAA+GGG | + | chr3.4:80547681-80547700 | MS.gene067074:intron | 10.0% |
| !!! | TTATTTTATTATGTGAAATT+TGG | + | chr3.4:80546310-80546329 | MS.gene067074:intron | 10.0% |
| !! | ATTACTTACTTAAAATCTAT+AGG | - | chr3.4:80546449-80546468 | None:intergenic | 15.0% |
| !! | TTTAAGTAAAAAACTATGAT+CGG | - | chr3.4:80546564-80546583 | None:intergenic | 15.0% |
| !!! | GTGTATTTTTATTTATGAAA+AGG | + | chr3.4:80547680-80547699 | MS.gene067074:intron | 15.0% |
| !! | AAAATATATTGGATACCTTA+AGG | - | chr3.4:80547500-80547519 | None:intergenic | 20.0% |
| !! | AAAGAATGAAAAAGCTTAAT+AGG | + | chr3.4:80545615-80545634 | MS.gene067074:intron | 20.0% |
| !! | ACGTCAAAAATTTCAAATTT+AGG | + | chr3.4:80547095-80547114 | MS.gene067074:intron | 20.0% |
| !! | ATCTACCAAAAAAACAATAA+TGG | - | chr3.4:80546489-80546508 | None:intergenic | 20.0% |
| !! | TAATGCACATTAAAAAAAGA+CGG | - | chr3.4:80546248-80546267 | None:intergenic | 20.0% |
| !! | TCTACCAAAAAAACAATAAT+GGG | - | chr3.4:80546488-80546507 | None:intergenic | 20.0% |
| !! | TTACTAAACTCAATAGTAAT+TGG | - | chr3.4:80545854-80545873 | None:intergenic | 20.0% |
| !!! | TTATTTGAGTTAGAACTTTT+GGG | + | chr3.4:80546600-80546619 | MS.gene067074:intron | 20.0% |
| !!! | TTTTATTTATGAAAAGGGTT+TGG | + | chr3.4:80547686-80547705 | MS.gene067074:intron | 20.0% |
| ! | AAAACATGAATGAGTAAAAG+TGG | - | chr3.4:80545676-80545695 | None:intergenic | 25.0% |
| ! | AAAATTTGGGAATAAGAAAG+AGG | - | chr3.4:80545335-80545354 | None:intergenic | 25.0% |
| ! | AAACATGAATGAGTAAAAGT+GGG | - | chr3.4:80545675-80545694 | None:intergenic | 25.0% |
| ! | AAACTCTTATGAGATAATTG+TGG | - | chr3.4:80545989-80546008 | None:intergenic | 25.0% |
| ! | AAATTTGGGAATAAGAAAGA+GGG | - | chr3.4:80545334-80545353 | None:intergenic | 25.0% |
| ! | AATGATTATAGGAGCAATTA+AGG | + | chr3.4:80545715-80545734 | MS.gene067074:intron | 25.0% |
| ! | ATAAGAGTTTGACATTTAAC+CGG | + | chr3.4:80545999-80546018 | MS.gene067074:CDS | 25.0% |
| ! | ATGACAAATCTGTGATATAT+AGG | + | chr3.4:80546735-80546754 | MS.gene067074:intron | 25.0% |
| ! | CTTACTTAAAATCTATAGGA+AGG | - | chr3.4:80546445-80546464 | None:intergenic | 25.0% |
| ! | GGATTAAGGTTGAAATTAAA+TGG | - | chr3.4:80545923-80545942 | None:intergenic | 25.0% |
| ! | GGTTTAAAGGATATATTAGT+TGG | - | chr3.4:80547270-80547289 | None:intergenic | 25.0% |
| ! | GTAAATTGGGATCATTATAT+TGG | - | chr3.4:80547370-80547389 | None:intergenic | 25.0% |
| ! | GTCTAAATTGAAAACAACTA+GGG | - | chr3.4:80545450-80545469 | None:intergenic | 25.0% |
| ! | TTATTAGAGATGTAAGCATT+GGG | - | chr3.4:80545899-80545918 | None:intergenic | 25.0% |
| !! | AAAAACAATAATGGGACATA+AGG | - | chr3.4:80546480-80546499 | None:intergenic | 25.0% |
| !! | GGATTAGAATGAAATGATTT+TGG | - | chr3.4:80545878-80545897 | None:intergenic | 25.0% |
| !! | GTTGTTTATATGGTATGTTT+TGG | - | chr3.4:80547291-80547310 | None:intergenic | 25.0% |
| !! | TTCAAATTTAGGATACGATA+CGG | + | chr3.4:80547106-80547125 | MS.gene067074:intron | 25.0% |
| !!! | ATGTCCCATTATTGTTTTTT+TGG | + | chr3.4:80546481-80546500 | MS.gene067074:intron | 25.0% |
| !!! | GTTATTTGAGTTAGAACTTT+TGG | + | chr3.4:80546599-80546618 | MS.gene067074:intron | 25.0% |
| !!! | TATGGTATGTTTTGGTTTAA+AGG | - | chr3.4:80547283-80547302 | None:intergenic | 25.0% |
| !!! | TATTTGAGTTAGAACTTTTG+GGG | + | chr3.4:80546601-80546620 | MS.gene067074:intron | 25.0% |
| !!! | TCTCATTTCTGAAACATAAA+AGG | - | chr3.4:80545568-80545587 | None:intergenic | 25.0% |
| AAAACATACCCAACAAATAC+AGG | + | chr3.4:80546221-80546240 | MS.gene067074:CDS | 30.0% | |
| AACATGAATGAGTAAAAGTG+GGG | - | chr3.4:80545674-80545693 | None:intergenic | 30.0% | |
| ATATTGGCCATTACTTGAAA+AGG | - | chr3.4:80547354-80547373 | None:intergenic | 30.0% | |
| CGTCTAAATTGAAAACAACT+AGG | - | chr3.4:80545451-80545470 | None:intergenic | 30.0% | |
| CTACTTTGAACTCTAACAAA+AGG | - | chr3.4:80546079-80546098 | None:intergenic | 30.0% | |
| CTTATTAGAGATGTAAGCAT+TGG | - | chr3.4:80545900-80545919 | None:intergenic | 30.0% | |
| TAAATCATTCGGATACTTCT+GGG | + | chr3.4:80547445-80547464 | MS.gene067074:intron | 30.0% | |
| TAAGAGTTTGACATTTAACC+GGG | + | chr3.4:80546000-80546019 | MS.gene067074:CDS | 30.0% | |
| TACACCAAGTCAAAATACAA+TGG | + | chr3.4:80547236-80547255 | MS.gene067074:intron | 30.0% | |
| TATTGGCCATTACTTGAAAA+GGG | - | chr3.4:80547353-80547372 | None:intergenic | 30.0% | |
| TTAAATCATTCGGATACTTC+TGG | + | chr3.4:80547444-80547463 | MS.gene067074:intron | 30.0% | |
| TTGAATGGCAAAGAGATTAA+TGG | + | chr3.4:80545824-80545843 | MS.gene067074:CDS | 30.0% | |
| ! | TTCAAAGTAGAGAGAGTTTT+GGG | + | chr3.4:80546089-80546108 | MS.gene067074:CDS | 30.0% |
| !! | AAGGCTTTGAAAGAATTGAA+TGG | + | chr3.4:80545809-80545828 | MS.gene067074:CDS | 30.0% |
| !! | AGGATATATTAGTTGGTGAA+TGG | - | chr3.4:80547263-80547282 | None:intergenic | 30.0% |
| !!! | TTTTTTTGAAGGAAGAGTTC+AGG | + | chr3.4:80546914-80546933 | MS.gene067074:intron | 30.0% |
| ACAAAGTCATAGGAGGATAA+AGG | - | chr3.4:80546419-80546438 | None:intergenic | 35.0% | |
| AGTATCAGACAGTACATAGT+GGG | - | chr3.4:80545414-80545433 | None:intergenic | 35.0% | |
| ATACTAGTACCATCACCATA+CGG | - | chr3.4:80546711-80546730 | None:intergenic | 35.0% | |
| ATATAGGAACAAATGCAACG+TGG | + | chr3.4:80546751-80546770 | MS.gene067074:intron | 35.0% | |
| CATAGTGCAGGTTGTTTATA+TGG | - | chr3.4:80547301-80547320 | None:intergenic | 35.0% | |
| CATTATATAGCTATGAAGCC+CGG | - | chr3.4:80547639-80547658 | None:intergenic | 35.0% | |
| GAAGTTACTGTTGAATATGC+TGG | + | chr3.4:80546349-80546368 | MS.gene067074:CDS | 35.0% | |
| GAGATAATTGTGGTGAATGA+GGG | - | chr3.4:80545979-80545998 | None:intergenic | 35.0% | |
| GATACCTTAAGGATACGTTA+AGG | - | chr3.4:80547489-80547508 | None:intergenic | 35.0% | |
| GTATCCTTAACGTATCCTTA+AGG | + | chr3.4:80547482-80547501 | MS.gene067074:intron | 35.0% | |
| GTATGGGAATGTAGTTGTTT+GGG | - | chr3.4:80545031-80545050 | None:intergenic | 35.0% | |
| TATAGGAACAAATGCAACGT+GGG | + | chr3.4:80546752-80546771 | MS.gene067074:intron | 35.0% | |
| TGACTATCTTCATACTACCT+TGG | - | chr3.4:80547330-80547349 | None:intergenic | 35.0% | |
| TGAGATAATTGTGGTGAATG+AGG | - | chr3.4:80545980-80545999 | None:intergenic | 35.0% | |
| TTTATCATGAGAGTCGTTCT+AGG | - | chr3.4:80546202-80546221 | None:intergenic | 35.0% | |
| ! | GTTCAAAGTAGAGAGAGTTT+TGG | + | chr3.4:80546088-80546107 | MS.gene067074:CDS | 35.0% |
| ! | TAGTTGTTTGGGTTAAACTC+TGG | - | chr3.4:80545020-80545039 | None:intergenic | 35.0% |
| ! | TCAAAGTAGAGAGAGTTTTG+GGG | + | chr3.4:80546090-80546109 | MS.gene067074:CDS | 35.0% |
| ! | TCTAGGATCAGATTCAACAA+TGG | - | chr3.4:80546185-80546204 | None:intergenic | 35.0% |
| !! | CACAATAGGATTGGTTCAAT+GGG | + | chr3.4:80546028-80546047 | MS.gene067074:CDS | 35.0% |
| !!! | CGACAAGTTTTTGAAGCTTT+TGG | + | chr3.4:80545494-80545513 | MS.gene067074:intron | 35.0% |
| !!! | TAGTCACCCTTTTCAAGTAA+TGG | + | chr3.4:80547344-80547363 | MS.gene067074:intron | 35.0% |
| !!! | TGGTCCATTGTATTTTGACT+TGG | - | chr3.4:80547243-80547262 | None:intergenic | 35.0% |
| AAAGACGGACCTGTATTTGT+TGG | - | chr3.4:80546233-80546252 | None:intergenic | 40.0% | |
| AACAAATGCAACGTGGGATA+TGG | + | chr3.4:80546758-80546777 | MS.gene067074:CDS | 40.0% | |
| AAGACGGACCTGTATTTGTT+GGG | - | chr3.4:80546232-80546251 | None:intergenic | 40.0% | |
| AAGGTACACAAAGTCATAGG+AGG | - | chr3.4:80546426-80546445 | None:intergenic | 40.0% | |
| ACGAAATGAGTCCGTTTGAA+CGG | - | chr3.4:80545213-80545232 | None:intergenic | 40.0% | |
| AGATAATGCTCCATCTCACA+CGG | - | chr3.4:80547747-80547766 | None:intergenic | 40.0% | |
| AGGAGCAATTAAGGAAGTGA+GGG | + | chr3.4:80545724-80545743 | MS.gene067074:intron | 40.0% | |
| AGTTAAAGACCTCCCAATGT+TGG | - | chr3.4:80546841-80546860 | None:intergenic | 40.0% | |
| ATAACTATGAAGCCCCGATA+CGG | + | chr3.4:80547034-80547053 | MS.gene067074:intron | 40.0% | |
| CAATCCTATTGTGGTTTACC+CGG | - | chr3.4:80546021-80546040 | None:intergenic | 40.0% | |
| CAGTATCAGACAGTACATAG+TGG | - | chr3.4:80545415-80545434 | None:intergenic | 40.0% | |
| CCATTGAACCAATCCTATTG+TGG | - | chr3.4:80546030-80546049 | None:intergenic | 40.0% | |
| CGACATAAGAGATGCTGAAA+AGG | + | chr3.4:80545790-80545809 | MS.gene067074:CDS | 40.0% | |
| CGTTATGTGACTTACTCATG+TGG | - | chr3.4:80547007-80547026 | None:intergenic | 40.0% | |
| CTGTCTGATACTGTGAATCA+AGG | + | chr3.4:80545422-80545441 | MS.gene067074:intron | 40.0% | |
| CTTTACGTAGGTCAGTTTCA+GGG | - | chr3.4:80545163-80545182 | None:intergenic | 40.0% | |
| GGAAGAAGGTCAAGATCATA+GGG | + | chr3.4:80547875-80547894 | MS.gene067074:CDS | 40.0% | |
| GGTAGATAGACGATGAACTT+CGG | + | chr3.4:80546502-80546521 | MS.gene067074:intron | 40.0% | |
| GGTATGGGAATGTAGTTGTT+TGG | - | chr3.4:80545032-80545051 | None:intergenic | 40.0% | |
| TAGGAGCAATTAAGGAAGTG+AGG | + | chr3.4:80545723-80545742 | MS.gene067074:intron | 40.0% | |
| TCCAAAAGTTGGATAGCACT+TGG | - | chr3.4:80546652-80546671 | None:intergenic | 40.0% | |
| TCGAGATGGGAAACAATTGA+CGG | + | chr3.4:80547788-80547807 | MS.gene067074:CDS | 40.0% | |
| TCTTTACGTAGGTCAGTTTC+AGG | - | chr3.4:80545164-80545183 | None:intergenic | 40.0% | |
| TGACCTACGTAAAGACCTTT+CGG | + | chr3.4:80545169-80545188 | MS.gene067074:CDS | 40.0% | |
| TGGAAGAAGGTCAAGATCAT+AGG | + | chr3.4:80547874-80547893 | MS.gene067074:CDS | 40.0% | |
| TGTGAATATGACATCTCCTG+AGG | + | chr3.4:80546784-80546803 | MS.gene067074:CDS | 40.0% | |
| TGTGGAACAAGTCCAAAAGT+TGG | - | chr3.4:80546663-80546682 | None:intergenic | 40.0% | |
| TTAACCGGGTAAACCACAAT+AGG | + | chr3.4:80546014-80546033 | MS.gene067074:CDS | 40.0% | |
| TTTACGTAGGTCAGTTTCAG+GGG | - | chr3.4:80545162-80545181 | None:intergenic | 40.0% | |
| ! | ACCCGACTACCAATTTTTGT+CGG | - | chr3.4:80546533-80546552 | None:intergenic | 40.0% |
| ! | AGGAAGGTACACAAAGTCAT+AGG | - | chr3.4:80546429-80546448 | None:intergenic | 40.0% |
| ! | ATTTAGGATACGATACGGCT+TGG | + | chr3.4:80547111-80547130 | MS.gene067074:intron | 40.0% |
| ! | CAAACGGACTCATTTCGTAA+CGG | + | chr3.4:80545215-80545234 | MS.gene067074:CDS | 40.0% |
| ! | CTCCGACAAAAATTGGTAGT+CGG | + | chr3.4:80546528-80546547 | MS.gene067074:intron | 40.0% |
| ! | CTCTGATTCCTTTTCTTCCA+TGG | - | chr3.4:80545755-80545774 | None:intergenic | 40.0% |
| ! | GGTTCAATGGGTTCATTGAA+GGG | + | chr3.4:80546040-80546059 | MS.gene067074:CDS | 40.0% |
| ! | TCCAAGTGCTATCCAACTTT+TGG | + | chr3.4:80546648-80546667 | MS.gene067074:intron | 40.0% |
| ! | TCCGACAAAAATTGGTAGTC+GGG | + | chr3.4:80546529-80546548 | MS.gene067074:intron | 40.0% |
| ! | TGACTTACTCATGTGGACTA+TGG | - | chr3.4:80547000-80547019 | None:intergenic | 40.0% |
| ! | TGGTTCAATGGGTTCATTGA+AGG | + | chr3.4:80546039-80546058 | MS.gene067074:CDS | 40.0% |
| !! | AACTTTTGGGGATAGCGTTT+AGG | + | chr3.4:80546613-80546632 | MS.gene067074:intron | 40.0% |
| !! | ATACTTCTGGGATACGTATC+CGG | + | chr3.4:80547457-80547476 | MS.gene067074:intron | 40.0% |
| !! | ATACTTCTGGGATACGTATC+TGG | + | chr3.4:80547457-80547476 | MS.gene067074:intron | 40.0% |
| !! | CCACAATAGGATTGGTTCAA+TGG | + | chr3.4:80546027-80546046 | MS.gene067074:CDS | 40.0% |
| !! | TACTTCTGGGATACGTATCT+GGG | + | chr3.4:80547458-80547477 | MS.gene067074:intron | 40.0% |
| AAGCCGAAAGGTCTTTACGT+AGG | - | chr3.4:80545175-80545194 | None:intergenic | 45.0% | |
| AATTGTTTCCCATCTCGAGG+TGG | - | chr3.4:80547786-80547805 | None:intergenic | 45.0% | |
| ACTCACATACGCAAGAGTTC+AGG | + | chr3.4:80546877-80546896 | MS.gene067074:CDS | 45.0% | |
| AGGACTAAGGAGAATAGAGC+GGG | - | chr3.4:80545129-80545148 | None:intergenic | 45.0% | |
| ATACGGGTACGATACGATAC+GGG | + | chr3.4:80547063-80547082 | MS.gene067074:intron | 45.0% | |
| ATTATGTAACCCGTGCCGTA+TGG | + | chr3.4:80546693-80546712 | MS.gene067074:intron | 45.0% | |
| CAAGATCATAGGGTAGGTAG+TGG | + | chr3.4:80547885-80547904 | MS.gene067074:CDS | 45.0% | |
| CAGGACTAAGGAGAATAGAG+CGG | - | chr3.4:80545130-80545149 | None:intergenic | 45.0% | |
| CCTGCACTATGATGATACCA+AGG | + | chr3.4:80547310-80547329 | MS.gene067074:intron | 45.0% | |
| CCTTGGTATCATCATAGTGC+AGG | - | chr3.4:80547313-80547332 | None:intergenic | 45.0% | |
| CGGGTAAACCACAATAGGAT+TGG | + | chr3.4:80546019-80546038 | MS.gene067074:CDS | 45.0% | |
| CGTAAAGACCTTTCGGCTTT+CGG | + | chr3.4:80545176-80545195 | MS.gene067074:CDS | 45.0% | |
| GAACTCTTGCGTATGTGAGT+TGG | - | chr3.4:80546877-80546896 | None:intergenic | 45.0% | |
| GAAGGTCAAGATCATAGGGT+AGG | + | chr3.4:80547879-80547898 | MS.gene067074:CDS | 45.0% | |
| GACGTGATGAGCAGAAAAAG+TGG | + | chr3.4:80547915-80547934 | MS.gene067074:CDS | 45.0% | |
| GATAATGCTCCATCTCACAC+GGG | - | chr3.4:80547746-80547765 | None:intergenic | 45.0% | |
| GATACGGGTACGATACGATA+CGG | + | chr3.4:80547062-80547081 | MS.gene067074:intron | 45.0% | |
| GGCAACGCTAAGATTCTACA+AGG | + | chr3.4:80546805-80546824 | MS.gene067074:CDS | 45.0% | |
| GGGATACACCATGGAAGAAA+AGG | + | chr3.4:80545744-80545763 | MS.gene067074:CDS | 45.0% | |
| GTAGCTGATGAGATGGAAGA+AGG | + | chr3.4:80547861-80547880 | MS.gene067074:CDS | 45.0% | |
| GTCAATTGTTTCCCATCTCG+AGG | - | chr3.4:80547789-80547808 | None:intergenic | 45.0% | |
| GTGATGAGCAGAAAAAGTGG+CGG | + | chr3.4:80547918-80547937 | MS.gene067074:CDS | 45.0% | |
| GTTCATTGAAGGGTGAAGAG+AGG | + | chr3.4:80546050-80546069 | MS.gene067074:CDS | 45.0% | |
| TAGAATCTTAGCGTTGCCTC+AGG | - | chr3.4:80546803-80546822 | None:intergenic | 45.0% | |
| TATCCGATACGTATCCGACA+CGG | + | chr3.4:80547591-80547610 | MS.gene067074:intron | 45.0% | |
| TCCATCTCATCAGCTACAGA+AGG | - | chr3.4:80547858-80547877 | None:intergenic | 45.0% | |
| TCCTTCTGTAGCTGATGAGA+TGG | + | chr3.4:80547854-80547873 | MS.gene067074:CDS | 45.0% | |
| TCGGAAGCTCCGACAAAAAT+TGG | + | chr3.4:80546521-80546540 | MS.gene067074:intron | 45.0% | |
| TGATCTTAGACACGCAGAGA+CGG | + | chr3.4:80545259-80545278 | MS.gene067074:CDS | 45.0% | |
| ! | TGTTTTCACCACCTCGAGAT+GGG | + | chr3.4:80547775-80547794 | MS.gene067074:CDS | 45.0% |
| !! | TACTTCTGGGATACGTATCC+GGG | + | chr3.4:80547549-80547568 | MS.gene067074:intron | 45.0% |
| !! | AAAAATTAAATTAAATCATT+CGG | + | chr3.4:80547434-80547453 | MS.gene067074:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTGA+AGG | + | chr3.4:80546903-80546922 | MS.gene067074:intron | 5.0% |
| AACTTGTCGCAGCTGATCAG+AGG | - | chr3.4:80545483-80545502 | None:intergenic | 50.0% | |
| AATTGTGGTGAATGAGGGCG+TGG | - | chr3.4:80545974-80545993 | None:intergenic | 50.0% | |
| ACCCGTATCCGTATCCGTAT+CGG | - | chr3.4:80547051-80547070 | None:intergenic | 50.0% | |
| ACTAAGGAGAATAGAGCGGG+TGG | - | chr3.4:80545126-80545145 | None:intergenic | 50.0% | |
| AGCAGAAAAAGTGGCGGCAT+AGG | + | chr3.4:80547924-80547943 | MS.gene067074:CDS | 50.0% | |
| AGGAAGTGAGGGATACACCA+TGG | + | chr3.4:80545735-80545754 | MS.gene067074:CDS | 50.0% | |
| AGTACCATCACCATACGGCA+CGG | - | chr3.4:80546706-80546725 | None:intergenic | 50.0% | |
| ATACGTATCCGACACGGGTA+CGG | + | chr3.4:80547597-80547616 | MS.gene067074:intron | 50.0% | |
| ATCCGATACGTATCCGACAC+GGG | + | chr3.4:80547592-80547611 | MS.gene067074:intron | 50.0% | |
| ATGAAGCCCCGATACGGATA+CGG | + | chr3.4:80547040-80547059 | MS.gene067074:intron | 50.0% | |
| ATTGACGGAGCCAATTCCAG+TGG | + | chr3.4:80547803-80547822 | MS.gene067074:CDS | 50.0% | |
| CGAAGTCAGAGCCGTTCAAA+CGG | + | chr3.4:80545199-80545218 | MS.gene067074:CDS | 50.0% | |
| CTAAGGAGAATAGAGCGGGT+GGG | - | chr3.4:80545125-80545144 | None:intergenic | 50.0% | |
| CTCAAAGTTCCCGTGTGAGA+TGG | + | chr3.4:80547734-80547753 | MS.gene067074:CDS | 50.0% | |
| GAAGCCCGGATACTCCAAAA+TGG | - | chr3.4:80547625-80547644 | None:intergenic | 50.0% | |
| GCGGGGAACATGCTACAAAT+TGG | + | chr3.4:80547825-80547844 | MS.gene067074:CDS | 50.0% | |
| GCTCATTGCAGTGTACACAG+TGG | - | chr3.4:80546379-80546398 | None:intergenic | 50.0% | |
| GGTTGAAATACGCAGCACAG+AGG | - | chr3.4:80545313-80545332 | None:intergenic | 50.0% | |
| GTACACTGCAATGAGCAGCT+AGG | + | chr3.4:80546383-80546402 | MS.gene067074:CDS | 50.0% | |
| TACCCGTGTCGGATACGTAT+CGG | - | chr3.4:80547597-80547616 | None:intergenic | 50.0% | |
| TAGCGGCGTGGGGAAAATTT+GGG | - | chr3.4:80545348-80545367 | None:intergenic | 50.0% | |
| TATCGGATACCGATACTCCG+CGG | - | chr3.4:80547580-80547599 | None:intergenic | 50.0% | |
| ! | GATCATAGGGTAGGTAGTGG+TGG | + | chr3.4:80547888-80547907 | MS.gene067074:CDS | 50.0% |
| ! | GATGGAGCATTATCTGCCAG+TGG | + | chr3.4:80547752-80547771 | MS.gene067074:CDS | 50.0% |
| ! | GTGTTTTCACCACCTCGAGA+TGG | + | chr3.4:80547774-80547793 | MS.gene067074:CDS | 50.0% |
| !! | GGTTAAACTCTGGAGCAGCA+GGG | - | chr3.4:80545010-80545029 | None:intergenic | 50.0% |
| !! | GTGGGTATGGTGGATAGATG+CGG | - | chr3.4:80545107-80545126 | None:intergenic | 50.0% |
| !!! | AGAGTTTTGGGGAAAGCGCT+TGG | + | chr3.4:80546101-80546120 | MS.gene067074:CDS | 50.0% |
| !!! | CGGCACCATTTTGGAGTATC+CGG | + | chr3.4:80547617-80547636 | MS.gene067074:intron | 50.0% |
| !!! | GGCACCATTTTGGAGTATCC+GGG | + | chr3.4:80547618-80547637 | MS.gene067074:intron | 50.0% |
| AATACCGACGGCGACTGGTA+TGG | - | chr3.4:80545048-80545067 | None:intergenic | 55.0% | |
| AATACGCAGCACAGAGGACG+TGG | - | chr3.4:80545307-80545326 | None:intergenic | 55.0% | |
| AATAGAGCGGGTGGGTATGG+TGG | - | chr3.4:80545117-80545136 | None:intergenic | 55.0% | |
| ACGTAGGTCAGTTTCAGGGG+TGG | - | chr3.4:80545159-80545178 | None:intergenic | 55.0% | |
| AGACCTCCCAATGTTGGTGC+TGG | - | chr3.4:80546835-80546854 | None:intergenic | 55.0% | |
| AGGCCTTCCAGCACCAACAT+TGG | + | chr3.4:80546825-80546844 | MS.gene067074:CDS | 55.0% | |
| ATACCGACGGCGACTGGTAT+GGG | - | chr3.4:80545047-80545066 | None:intergenic | 55.0% | |
| ATGTTCCCCGCCACTGGAAT+TGG | - | chr3.4:80547816-80547835 | None:intergenic | 55.0% | |
| ATTCCCATACCAGTCGCCGT+CGG | + | chr3.4:80545041-80545060 | MS.gene067074:CDS | 55.0% | |
| CCCCGATACGGATACGGATA+CGG | + | chr3.4:80547046-80547065 | MS.gene067074:intron | 55.0% | |
| CCCGATACGGATACGGATAC+GGG | + | chr3.4:80547047-80547066 | MS.gene067074:intron | 55.0% | |
| CCCGTATCCGTATCCGTATC+GGG | - | chr3.4:80547050-80547069 | None:intergenic | 55.0% | |
| CCGTATCCGTATCCGTATCG+GGG | - | chr3.4:80547049-80547068 | None:intergenic | 55.0% | |
| CGAGGTGGTGAAAACACCAC+TGG | - | chr3.4:80547771-80547790 | None:intergenic | 55.0% | |
| CGTAGGTCAGTTTCAGGGGT+GGG | - | chr3.4:80545158-80545177 | None:intergenic | 55.0% | |
| CTTCCAGCACCAACATTGGG+AGG | + | chr3.4:80546829-80546848 | MS.gene067074:CDS | 55.0% | |
| GAGAATAGAGCGGGTGGGTA+TGG | - | chr3.4:80545120-80545139 | None:intergenic | 55.0% | |
| GGCCTTCCAGCACCAACATT+GGG | + | chr3.4:80546826-80546845 | MS.gene067074:CDS | 55.0% | |
| GTACCATCACCATACGGCAC+GGG | - | chr3.4:80546705-80546724 | None:intergenic | 55.0% | |
| GTAGCGGCGTGGGGAAAATT+TGG | - | chr3.4:80545349-80545368 | None:intergenic | 55.0% | |
| GTAGGGGTAGGGAATACCGA+CGG | - | chr3.4:80545060-80545079 | None:intergenic | 55.0% | |
| TAACCCGTGCCGTATGGTGA+TGG | + | chr3.4:80546699-80546718 | MS.gene067074:intron | 55.0% | |
| TGACTTCGCCGAAAGCCGAA+AGG | - | chr3.4:80545187-80545206 | None:intergenic | 55.0% | |
| TGCAATGAGCAGCTAGGCGA+CGG | + | chr3.4:80546389-80546408 | MS.gene067074:CDS | 55.0% | |
| ! | AAAGCGCTTGGAGTTGGAGG+GGG | + | chr3.4:80546113-80546132 | MS.gene067074:CDS | 55.0% |
| ! | ACACGGGTACGGCACCATTT+TGG | + | chr3.4:80547608-80547627 | MS.gene067074:intron | 55.0% |
| !! | AAATGGTGCCGTACCCGTGT+CGG | - | chr3.4:80547608-80547627 | None:intergenic | 55.0% |
| !! | AGTACATAGTGGGCCCACAG+TGG | - | chr3.4:80545404-80545423 | None:intergenic | 55.0% |
| !! | CTCCCAATGTTGGTGCTGGA+AGG | - | chr3.4:80546831-80546850 | None:intergenic | 55.0% |
| !! | CTCTGGAGCAGCAGGGTTTA+AGG | - | chr3.4:80545003-80545022 | None:intergenic | 55.0% |
| !! | GAAAGCGCTTGGAGTTGGAG+GGG | + | chr3.4:80546112-80546131 | MS.gene067074:CDS | 55.0% |
| !! | GGAAAGCGCTTGGAGTTGGA+GGG | + | chr3.4:80546111-80546130 | MS.gene067074:CDS | 55.0% |
| !! | GGGTTAAACTCTGGAGCAGC+AGG | - | chr3.4:80545011-80545030 | None:intergenic | 55.0% |
| !! | GGTATGGTGGATAGATGCGG+CGG | - | chr3.4:80545104-80545123 | None:intergenic | 55.0% |
| !! | TACGTATCCGGGAGTATCCG+CGG | + | chr3.4:80547560-80547579 | MS.gene067074:intron | 55.0% |
| !! | TTGGGGAAAGCGCTTGGAGT+TGG | + | chr3.4:80546107-80546126 | MS.gene067074:CDS | 55.0% |
| ACACGCAGAGACGGCGTTTG+CGG | + | chr3.4:80545268-80545287 | MS.gene067074:CDS | 60.0% | |
| ACGGAGCCAATTCCAGTGGC+GGG | + | chr3.4:80547807-80547826 | MS.gene067074:CDS | 60.0% | |
| AGGTCAGTTTCAGGGGTGGG+AGG | - | chr3.4:80545155-80545174 | None:intergenic | 60.0% | |
| CGATACTCCGCGGATACTCC+CGG | - | chr3.4:80547570-80547589 | None:intergenic | 60.0% | |
| CGTGGAGAAAATCGCCGTCG+CGG | - | chr3.4:80545956-80545975 | None:intergenic | 60.0% | |
| GACGGAGCCAATTCCAGTGG+CGG | + | chr3.4:80547806-80547825 | MS.gene067074:CDS | 60.0% | |
| GGTCAGTTTCAGGGGTGGGA+GGG | - | chr3.4:80545154-80545173 | None:intergenic | 60.0% | |
| GTCAGTTTCAGGGGTGGGAG+GGG | - | chr3.4:80545153-80545172 | None:intergenic | 60.0% | |
| GTGGAGAAAATCGCCGTCGC+GGG | - | chr3.4:80545955-80545974 | None:intergenic | 60.0% | |
| TAGGGAATACCGACGGCGAC+TGG | - | chr3.4:80545053-80545072 | None:intergenic | 60.0% | |
| TGGAGAAAATCGCCGTCGCG+GGG | - | chr3.4:80545954-80545973 | None:intergenic | 60.0% | |
| TGTAGCATGTTCCCCGCCAC+TGG | - | chr3.4:80547822-80547841 | None:intergenic | 60.0% | |
| !! | ATGGTGGATAGATGCGGCGG+CGG | - | chr3.4:80545101-80545120 | None:intergenic | 60.0% |
| !! | CGGGAGTATCCGCGGAGTAT+CGG | + | chr3.4:80547568-80547587 | MS.gene067074:intron | 60.0% |
| !! | GCGGGGAAGGAGGTGGATTA+AGG | - | chr3.4:80545937-80545956 | None:intergenic | 60.0% |
| !! | GGGAAAGCGCTTGGAGTTGG+AGG | + | chr3.4:80546110-80546129 | MS.gene067074:CDS | 60.0% |
| ATCCACCTCCTTCCCCGCGA+CGG | + | chr3.4:80545939-80545958 | MS.gene067074:CDS | 65.0% | |
| CGGAGCCAATTCCAGTGGCG+GGG | + | chr3.4:80547808-80547827 | MS.gene067074:CDS | 65.0% | |
| GAAAATCGCCGTCGCGGGGA+AGG | - | chr3.4:80545950-80545969 | None:intergenic | 65.0% | |
| AATCGCCGTCGCGGGGAAGG+AGG | - | chr3.4:80545947-80545966 | None:intergenic | 70.0% | |
| ACACCGGCGACGAGACCTGG+CGG | - | chr3.4:80545380-80545399 | None:intergenic | 70.0% | |
| GCGCAGGGTGGGTAGGGGTA+GGG | - | chr3.4:80545071-80545090 | None:intergenic | 70.0% | |
| GGGTGGGAGGGGCAGGACTA+AGG | - | chr3.4:80545142-80545161 | None:intergenic | 70.0% | |
| GTGACGGCGCAGGGTGGGTA+GGG | - | chr3.4:80545077-80545096 | None:intergenic | 70.0% | |
| GTGGGCCCACAGTGGCACAC+CGG | - | chr3.4:80545396-80545415 | None:intergenic | 70.0% | |
| GTTTCAGGGGTGGGAGGGGC+AGG | - | chr3.4:80545149-80545168 | None:intergenic | 70.0% | |
| TAGATGCGGCGGCGGCGTGA+CGG | - | chr3.4:80545093-80545112 | None:intergenic | 70.0% | |
| TGACGGCGCAGGGTGGGTAG+GGG | - | chr3.4:80545076-80545095 | None:intergenic | 70.0% | |
| ! | CGTCGCCGGTGTGCCACTGT+GGG | + | chr3.4:80545388-80545407 | MS.gene067074:intron | 70.0% |
| ! | TCGTCGCCGGTGTGCCACTG+TGG | + | chr3.4:80545387-80545406 | MS.gene067074:intron | 70.0% |
| ACGAGACCTGGCGGCTGCGG+AGG | - | chr3.4:80545371-80545390 | None:intergenic | 75.0% | |
| CAGCCGCCAGGTCTCGTCGC+CGG | + | chr3.4:80545374-80545393 | MS.gene067074:CDS | 75.0% | |
| CCTGGCGGCTGCGGAGGTAG+CGG | - | chr3.4:80545365-80545384 | None:intergenic | 75.0% | |
| CGTGACGGCGCAGGGTGGGT+AGG | - | chr3.4:80545078-80545097 | None:intergenic | 75.0% | |
| GCGACGAGACCTGGCGGCTG+CGG | - | chr3.4:80545374-80545393 | None:intergenic | 75.0% | |
| GGCACACCGGCGACGAGACC+TGG | - | chr3.4:80545383-80545402 | None:intergenic | 75.0% | |
| GGCGCAGGGTGGGTAGGGGT+AGG | - | chr3.4:80545072-80545091 | None:intergenic | 75.0% | |
| ! | GCTGCGGAGGTAGCGGCGTG+GGG | - | chr3.4:80545358-80545377 | None:intergenic | 75.0% |
| ! | GGCTGCGGAGGTAGCGGCGT+GGG | - | chr3.4:80545359-80545378 | None:intergenic | 75.0% |
| ! | CCGCTACCTCCGCAGCCGCC+AGG | + | chr3.4:80545362-80545381 | MS.gene067074:CDS | 80.0% |
| ! | CGCCGTCGCGGGGAAGGAGG+TGG | - | chr3.4:80545944-80545963 | None:intergenic | 80.0% |
| ! | GCGGCGTGACGGCGCAGGGT+GGG | - | chr3.4:80545082-80545101 | None:intergenic | 80.0% |
| !! | CGGCTGCGGAGGTAGCGGCG+TGG | - | chr3.4:80545360-80545379 | None:intergenic | 80.0% |
| ! | GGCGGCGGCGTGACGGCGCA+GGG | - | chr3.4:80545086-80545105 | None:intergenic | 85.0% |
| ! | GGCGGCGTGACGGCGCAGGG+TGG | - | chr3.4:80545083-80545102 | None:intergenic | 85.0% |
| ! | CGGCGGCGGCGTGACGGCGC+AGG | - | chr3.4:80545087-80545106 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 80544990 | 80547983 | 80544990 | ID=MS.gene067074 |
| chr3.4 | mRNA | 80544990 | 80547983 | 80544990 | ID=MS.gene067074.t1;Parent=MS.gene067074 |
| chr3.4 | exon | 80544990 | 80545395 | 80544990 | ID=MS.gene067074.t1.exon1;Parent=MS.gene067074.t1 |
| chr3.4 | CDS | 80544990 | 80545395 | 80544990 | ID=cds.MS.gene067074.t1;Parent=MS.gene067074.t1 |
| chr3.4 | exon | 80545726 | 80546242 | 80545726 | ID=MS.gene067074.t1.exon2;Parent=MS.gene067074.t1 |
| chr3.4 | CDS | 80545726 | 80546242 | 80545726 | ID=cds.MS.gene067074.t1;Parent=MS.gene067074.t1 |
| chr3.4 | exon | 80546346 | 80546459 | 80546346 | ID=MS.gene067074.t1.exon3;Parent=MS.gene067074.t1 |
| chr3.4 | CDS | 80546346 | 80546459 | 80546346 | ID=cds.MS.gene067074.t1;Parent=MS.gene067074.t1 |
| chr3.4 | exon | 80546757 | 80546898 | 80546757 | ID=MS.gene067074.t1.exon4;Parent=MS.gene067074.t1 |
| chr3.4 | CDS | 80546757 | 80546898 | 80546757 | ID=cds.MS.gene067074.t1;Parent=MS.gene067074.t1 |
| chr3.4 | exon | 80547702 | 80547983 | 80547702 | ID=MS.gene067074.t1.exon5;Parent=MS.gene067074.t1 |
| chr3.4 | CDS | 80547702 | 80547983 | 80547702 | ID=cds.MS.gene067074.t1;Parent=MS.gene067074.t1 |
| Gene Sequence |
| Protein sequence |
