Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067145.t1 | XP_003603465.1 | 97.6 | 457 | 11 | 0 | 1 | 457 | 750 | 1206 | 2.00E-262 | 914.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067145.t1 | Q9FWQ5 | 44.9 | 463 | 230 | 7 | 1 | 449 | 1241 | 1692 | 6.4e-116 | 419.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067145.t1 | G7JBQ0 | 97.6 | 457 | 11 | 0 | 1 | 457 | 750 | 1206 | 1.5e-262 | 914.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene067145.t1 | TR | TAZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050303 | MS.gene067145 | 0.806425 | 8.28E-50 | -1.69E-46 |
| MS.gene050355 | MS.gene067145 | 0.804433 | 2.17E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene067145 | 0.807637 | 4.59E-50 | -1.69E-46 |
| MS.gene050799 | MS.gene067145 | 0.801006 | 1.10E-48 | -1.69E-46 |
| MS.gene050953 | MS.gene067145 | 0.832123 | 1.13E-55 | -1.69E-46 |
| MS.gene052333 | MS.gene067145 | 0.807967 | 3.90E-50 | -1.69E-46 |
| MS.gene052358 | MS.gene067145 | -0.832025 | 1.20E-55 | -1.69E-46 |
| MS.gene052926 | MS.gene067145 | 0.800424 | 1.45E-48 | -1.69E-46 |
| MS.gene053054 | MS.gene067145 | -0.813764 | 2.17E-51 | -1.69E-46 |
| MS.gene053221 | MS.gene067145 | 0.816406 | 5.62E-52 | -1.69E-46 |
| MS.gene05415 | MS.gene067145 | 0.820197 | 7.79E-53 | -1.69E-46 |
| MS.gene054291 | MS.gene067145 | -0.831826 | 1.34E-55 | -1.69E-46 |
| MS.gene054405 | MS.gene067145 | 0.827772 | 1.30E-54 | -1.69E-46 |
| MS.gene055818 | MS.gene067145 | 0.820799 | 5.67E-53 | -1.69E-46 |
| MS.gene056091 | MS.gene067145 | 0.804339 | 2.27E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene067145 | 0.802584 | 5.23E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene067145 | 0.819691 | 1.02E-52 | -1.69E-46 |
| MS.gene058037 | MS.gene067145 | 0.819491 | 1.13E-52 | -1.69E-46 |
| MS.gene058498 | MS.gene067145 | 0.808471 | 3.05E-50 | -1.69E-46 |
| MS.gene058636 | MS.gene067145 | 0.806414 | 8.32E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene067145 | 0.837795 | 4.21E-57 | -1.69E-46 |
| MS.gene060572 | MS.gene067145 | 0.860675 | 1.75E-63 | -1.69E-46 |
| MS.gene060634 | MS.gene067145 | -0.832758 | 7.87E-56 | -1.69E-46 |
| MS.gene060879 | MS.gene067145 | 0.803396 | 3.56E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene067145 | -0.853034 | 3.12E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067145.t1 | MTR_3g107960 | 97.374 | 457 | 12 | 0 | 1 | 457 | 750 | 1206 | 0.0 | 946 |
| MS.gene067145.t1 | MTR_3g101100 | 82.378 | 471 | 69 | 3 | 1 | 457 | 925 | 1395 | 0.0 | 813 |
| MS.gene067145.t1 | MTR_5g085310 | 70.748 | 441 | 80 | 3 | 1 | 441 | 634 | 1025 | 0.0 | 641 |
| MS.gene067145.t1 | MTR_6g017010 | 68.584 | 452 | 89 | 5 | 1 | 450 | 365 | 765 | 0.0 | 628 |
| MS.gene067145.t1 | MTR_5g017020 | 63.874 | 382 | 86 | 4 | 1 | 376 | 190 | 525 | 1.58e-160 | 464 |
| MS.gene067145.t1 | MTR_5g017020 | 55.748 | 461 | 110 | 6 | 1 | 457 | 190 | 560 | 3.00e-159 | 462 |
| MS.gene067145.t1 | MTR_4g005050 | 46.220 | 463 | 223 | 8 | 1 | 449 | 1245 | 1695 | 2.35e-138 | 435 |
| MS.gene067145.t1 | MTR_6g017000 | 69.286 | 280 | 86 | 0 | 1 | 280 | 668 | 947 | 8.83e-135 | 411 |
| MS.gene067145.t1 | MTR_6g017140 | 62.000 | 250 | 76 | 2 | 1 | 248 | 221 | 453 | 1.82e-106 | 323 |
| MS.gene067145.t1 | MTR_0299s0030 | 54.959 | 242 | 51 | 5 | 80 | 272 | 67 | 299 | 2.11e-73 | 234 |
| MS.gene067145.t1 | MTR_5g085317 | 67.677 | 99 | 27 | 2 | 53 | 151 | 1 | 94 | 2.69e-36 | 130 |
| MS.gene067145.t1 | MTR_6g017130 | 59.483 | 116 | 29 | 4 | 194 | 304 | 249 | 351 | 1.69e-32 | 127 |
| MS.gene067145.t1 | MTR_6g017130 | 62.791 | 86 | 27 | 2 | 355 | 439 | 309 | 390 | 6.06e-24 | 103 |
| MS.gene067145.t1 | MTR_6g017120 | 85.714 | 63 | 8 | 1 | 1 | 63 | 39 | 100 | 6.28e-32 | 119 |
| MS.gene067145.t1 | MTR_1g047940 | 55.238 | 105 | 23 | 1 | 343 | 447 | 118 | 198 | 6.14e-27 | 107 |
| MS.gene067145.t1 | MTR_1g047940 | 57.143 | 70 | 25 | 1 | 49 | 118 | 4 | 68 | 2.17e-18 | 83.6 |
| MS.gene067145.t1 | MTR_6g017135 | 52.778 | 72 | 28 | 2 | 28 | 99 | 75 | 140 | 1.97e-14 | 70.9 |
| MS.gene067145.t1 | MTR_5g015680 | 40.741 | 81 | 46 | 2 | 370 | 449 | 184 | 263 | 1.58e-12 | 68.2 |
| MS.gene067145.t1 | MTR_5g015680 | 40.741 | 81 | 46 | 2 | 370 | 449 | 279 | 358 | 2.57e-12 | 68.6 |
| MS.gene067145.t1 | MTR_5g015680 | 40.741 | 81 | 46 | 2 | 370 | 449 | 318 | 397 | 3.03e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067145.t1 | AT1G16710 | 46.436 | 463 | 223 | 7 | 1 | 449 | 1215 | 1666 | 4.56e-141 | 442 |
| MS.gene067145.t1 | AT1G16710 | 46.436 | 463 | 223 | 7 | 1 | 449 | 1215 | 1666 | 4.56e-141 | 442 |
| MS.gene067145.t1 | AT1G16710 | 46.436 | 463 | 223 | 7 | 1 | 449 | 1215 | 1666 | 4.56e-141 | 442 |
| MS.gene067145.t1 | AT1G16710 | 46.436 | 463 | 223 | 7 | 1 | 449 | 1215 | 1666 | 4.56e-141 | 442 |
| MS.gene067145.t1 | AT1G16710 | 46.436 | 463 | 223 | 7 | 1 | 449 | 1176 | 1627 | 5.10e-141 | 442 |
| MS.gene067145.t1 | AT1G16710 | 46.436 | 463 | 223 | 7 | 1 | 449 | 1176 | 1627 | 5.10e-141 | 442 |
| MS.gene067145.t1 | AT1G16710 | 46.436 | 463 | 223 | 7 | 1 | 449 | 1176 | 1627 | 5.10e-141 | 442 |
| MS.gene067145.t1 | AT1G16710 | 46.436 | 463 | 223 | 7 | 1 | 449 | 1212 | 1663 | 5.70e-141 | 442 |
| MS.gene067145.t1 | AT1G16710 | 46.436 | 463 | 223 | 7 | 1 | 449 | 1241 | 1692 | 8.04e-141 | 442 |
| MS.gene067145.t1 | AT1G79000 | 46.004 | 463 | 225 | 7 | 1 | 449 | 1208 | 1659 | 9.30e-140 | 439 |
| MS.gene067145.t1 | AT1G79000 | 46.004 | 463 | 225 | 7 | 1 | 449 | 1232 | 1683 | 1.23e-139 | 439 |
| MS.gene067145.t1 | AT1G79000 | 46.004 | 463 | 225 | 7 | 1 | 449 | 1232 | 1683 | 1.70e-139 | 439 |
| MS.gene067145.t1 | AT3G12980 | 45.652 | 460 | 223 | 9 | 1 | 449 | 1131 | 1574 | 2.21e-132 | 417 |
| MS.gene067145.t1 | AT3G12980 | 45.652 | 460 | 223 | 9 | 1 | 449 | 1212 | 1655 | 2.54e-132 | 418 |
| MS.gene067145.t1 | AT1G55970 | 42.733 | 461 | 242 | 8 | 1 | 449 | 993 | 1443 | 3.18e-116 | 372 |
| MS.gene067145.t1 | AT1G55970 | 42.733 | 461 | 242 | 8 | 1 | 449 | 1007 | 1457 | 4.59e-116 | 372 |
| MS.gene067145.t1 | AT1G67220 | 37.307 | 453 | 239 | 14 | 1 | 430 | 931 | 1361 | 1.59e-92 | 306 |
| MS.gene067145.t1 | AT1G16710 | 51.220 | 205 | 96 | 2 | 1 | 202 | 1215 | 1418 | 3.52e-69 | 239 |
| MS.gene067145.t1 | AT5G67480 | 42.308 | 78 | 43 | 2 | 368 | 443 | 271 | 348 | 3.15e-12 | 68.2 |
| MS.gene067145.t1 | AT5G67480 | 42.308 | 78 | 43 | 2 | 368 | 443 | 271 | 348 | 3.15e-12 | 68.2 |
| MS.gene067145.t1 | AT5G67480 | 42.308 | 78 | 43 | 2 | 368 | 443 | 282 | 359 | 3.81e-12 | 68.2 |
Find 82 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGTTCCTACTGAAAA+AGG | 0.108559 | 3.1:+85663078 | MS.gene067145:CDS |
| TCAACACCACTATGTCAATT+TGG | 0.177074 | 3.1:+85664277 | MS.gene067145:CDS |
| CACTGAATGCAAGAAATTTC+AGG | 0.225944 | 3.1:+85663612 | MS.gene067145:CDS |
| CCCTGGTAGGCAATATCTTT+TGG | 0.238306 | 3.1:-85663510 | None:intergenic |
| CCAGAGTAGGGTTGTTTAAA+TGG | 0.239132 | 3.1:-85664084 | None:intergenic |
| AGAGTGGATTATTTGAAAAT+AGG | 0.257666 | 3.1:+85663975 | MS.gene067145:CDS |
| TTCCGAGTCTTTGCAATTCC+TGG | 0.259668 | 3.1:-85664596 | None:intergenic |
| TTTGAGTCAACTTGTGTTCA+TGG | 0.292920 | 3.1:-85664228 | None:intergenic |
| ATGGTCTTTAAAGCTCTATT+TGG | 0.306293 | 3.1:-85663234 | None:intergenic |
| TCTCGTTTGCCATACTTTGA+TGG | 0.326312 | 3.1:+85663120 | MS.gene067145:CDS |
| TTGCATCACCAGAATGTCTT+TGG | 0.327789 | 3.1:-85663286 | None:intergenic |
| GTTTCTCAACTTGCTACATA+TGG | 0.336552 | 3.1:+85662735 | MS.gene067145:CDS |
| CATTTGCTCTGCTTGCTATA+AGG | 0.336680 | 3.1:+85664189 | MS.gene067145:CDS |
| TCTTTGGCAGTGTCTTTAGA+AGG | 0.367904 | 3.1:-85663270 | None:intergenic |
| CAACACCACTATGTCAATTT+GGG | 0.370714 | 3.1:+85664278 | MS.gene067145:CDS |
| CAAACTGAAATTGATACTTC+TGG | 0.380328 | 3.1:-85664018 | None:intergenic |
| AGACACTGCCAAAGACATTC+TGG | 0.381560 | 3.1:+85663278 | MS.gene067145:CDS |
| ACTGAAGAAAATATTATTGT+TGG | 0.383324 | 3.1:+85663033 | MS.gene067145:CDS |
| TGCCATGAAGTGATAGCATC+TGG | 0.393848 | 3.1:+85663574 | MS.gene067145:CDS |
| GGCAGTGTCTTTAGAAGGAT+TGG | 0.396884 | 3.1:-85663265 | None:intergenic |
| GGTGCAAAATTCGAGTAAAT+CGG | 0.403532 | 3.1:+85664527 | MS.gene067145:CDS |
| TCCCAGATGCTATCACTTCA+TGG | 0.404024 | 3.1:-85663576 | None:intergenic |
| CAGTAGTCTCCATCAAAGTA+TGG | 0.411615 | 3.1:-85663129 | None:intergenic |
| AATGTAGAATACCACGTTGC+AGG | 0.414844 | 3.1:+85664617 | MS.gene067145:CDS |
| CTACTGGTCTGGTTATGTTA+TGG | 0.415989 | 3.1:+85663146 | MS.gene067145:CDS |
| GCCTGTGCTCCTTCAAGAAA+AGG | 0.420899 | 3.1:+85662758 | MS.gene067145:CDS |
| AAGCAACGCATTCCGAATCT+TGG | 0.427714 | 3.1:+85664847 | MS.gene067145:CDS |
| GTGCAAAATTCGAGTAAATC+GGG | 0.429183 | 3.1:+85664528 | MS.gene067145:CDS |
| CGGCGTAGCTTATCATTCTT+CGG | 0.442591 | 3.1:-85662824 | None:intergenic |
| TGCAGCTCCACGCCAAGATT+CGG | 0.450882 | 3.1:-85664859 | None:intergenic |
| ACAATATATTTCAAAAGTGC+TGG | 0.451731 | 3.1:+85664140 | MS.gene067145:CDS |
| AAATGTGTGCATCAGAACTA+TGG | 0.452913 | 3.1:-85663783 | None:intergenic |
| GTCTTTGCAATTCCTGGAGT+GGG | 0.453840 | 3.1:-85664590 | None:intergenic |
| CCTGTGCTCCTTCAAGAAAA+GGG | 0.454880 | 3.1:+85662759 | MS.gene067145:CDS |
| GCAGAGCAAATGGTACATTC+TGG | 0.456546 | 3.1:-85664178 | None:intergenic |
| TTCTTGATTTGAGAACAGTT+TGG | 0.463384 | 3.1:-85664484 | None:intergenic |
| TAGGGTTGTTTAAATGGTAG+AGG | 0.474232 | 3.1:-85664078 | None:intergenic |
| AACCCTACTCTGGTGACTGT+TGG | 0.474451 | 3.1:+85664094 | MS.gene067145:CDS |
| GATGCACACATTTCAAAGAA+TGG | 0.475962 | 3.1:+85663793 | MS.gene067145:CDS |
| ATCATTATGCTTAGTGTTGG+AGG | 0.477828 | 3.1:-85663942 | None:intergenic |
| TTTCTCAACTTGCTACATAT+GGG | 0.487718 | 3.1:+85662736 | MS.gene067145:CDS |
| GATATCATTATGCTTAGTGT+TGG | 0.494216 | 3.1:-85663945 | None:intergenic |
| GCCAAAAGATATTGCCTACC+AGG | 0.497791 | 3.1:+85663509 | MS.gene067145:CDS |
| CGAGGTGCATACACTATGTC+AGG | 0.500355 | 3.1:+85663816 | MS.gene067145:CDS |
| CTTATAGCAAGCAGAGCAAA+TGG | 0.504219 | 3.1:-85664188 | None:intergenic |
| TCGTGAGTCAAATGAGAAAA+CGG | 0.506997 | 3.1:+85664303 | MS.gene067145:CDS |
| TTATACTAACTGCCCACTCC+AGG | 0.508191 | 3.1:+85664578 | MS.gene067145:CDS |
| TTTGATGGAGACTACTGGTC+TGG | 0.509335 | 3.1:+85663135 | MS.gene067145:CDS |
| CACGCAGATGCTGAAACTGC+TGG | 0.511708 | 3.1:+85664405 | MS.gene067145:intron |
| GATCATCATTGATGAATACT+TGG | 0.516147 | 3.1:-85664056 | None:intergenic |
| CTCCAGGAATTGCAAAGACT+CGG | 0.528433 | 3.1:+85664594 | MS.gene067145:CDS |
| AGAAATTTCAGGAGTGTGAA+AGG | 0.528641 | 3.1:+85663623 | MS.gene067145:CDS |
| TTCCAACAGTCACCAGAGTA+GGG | 0.530507 | 3.1:-85664096 | None:intergenic |
| TTTCCAACAGTCACCAGAGT+AGG | 0.537493 | 3.1:-85664097 | None:intergenic |
| CCATTTAAACAACCCTACTC+TGG | 0.546250 | 3.1:+85664084 | MS.gene067145:CDS |
| AGTCTTTGCAATTCCTGGAG+TGG | 0.547250 | 3.1:-85664591 | None:intergenic |
| TCTGCTTGCTATAAGGATAG+AGG | 0.547525 | 3.1:+85664196 | MS.gene067145:CDS |
| TTTCAAATAATCCACTCTCA+AGG | 0.548304 | 3.1:-85663970 | None:intergenic |
| AGAAGGATTGGCATGTCCCA+TGG | 0.548735 | 3.1:-85663253 | None:intergenic |
| CATACTTTGATGGAGACTAC+TGG | 0.556982 | 3.1:+85663130 | MS.gene067145:CDS |
| CGATTCCCAAATTGACATAG+TGG | 0.580947 | 3.1:-85664283 | None:intergenic |
| TCATTATGCTTAGTGTTGGA+GGG | 0.581798 | 3.1:-85663941 | None:intergenic |
| TGATAGCATCTGGGAAGCGA+TGG | 0.590031 | 3.1:+85663584 | MS.gene067145:CDS |
| GAACAGTTTGGATAAGAGCA+TGG | 0.592137 | 3.1:-85664472 | None:intergenic |
| CAAACGAGAAGTTGTCACCT+TGG | 0.592914 | 3.1:-85663106 | None:intergenic |
| AAATAGAGCTTTAAAGACCA+TGG | 0.593540 | 3.1:+85663236 | MS.gene067145:CDS |
| GTTATGTTATGGAAGCAGCC+AGG | 0.598981 | 3.1:+85663157 | MS.gene067145:CDS |
| AATGATATCATCCTTGAGAG+TGG | 0.608883 | 3.1:+85663959 | MS.gene067145:CDS |
| CTGTGCTCCTTCAAGAAAAG+GGG | 0.610873 | 3.1:+85662760 | MS.gene067145:CDS |
| GCCATGAAGTGATAGCATCT+GGG | 0.616414 | 3.1:+85663575 | MS.gene067145:CDS |
| AATAGAGCTTTAAAGACCAT+GGG | 0.619881 | 3.1:+85663237 | MS.gene067145:CDS |
| AGAATGATAAGCTACGCCGT+TGG | 0.627014 | 3.1:+85662828 | MS.gene067145:CDS |
| CCAAAAGATATTGCCTACCA+GGG | 0.627033 | 3.1:+85663510 | MS.gene067145:CDS |
| GCATGGTTCAGCATTAGTTG+CGG | 0.636133 | 3.1:-85664455 | None:intergenic |
| AAAGAAATGATCATATACGT+TGG | 0.641068 | 3.1:-85663061 | None:intergenic |
| TCATTGATGAATACTTGGCA+CGG | 0.650719 | 3.1:-85664051 | None:intergenic |
| TGCAAAATTCGAGTAAATCG+GGG | 0.651340 | 3.1:+85664529 | MS.gene067145:CDS |
| AGCTATTCTCTCATGCTCGT+AGG | 0.662256 | 3.1:+85664506 | MS.gene067145:CDS |
| ACGCATTCCGAATCTTGGCG+TGG | 0.671085 | 3.1:+85664852 | MS.gene067145:CDS |
| ACACATTTCAAAGAATGGCG+AGG | 0.706634 | 3.1:+85663798 | MS.gene067145:CDS |
| TTGATGAATACTTGGCACGG+CGG | 0.746659 | 3.1:-85664048 | None:intergenic |
| ACAGTCACACACCTGCAACG+TGG | 0.756031 | 3.1:-85664628 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATAAATATAAAGAAAT+AGG | - | chr3.1:85664792-85664811 | None:intergenic | 10.0% |
| !!! | ATATTTATTTTGATTTTGCA+GGG | + | chr3.1:85664800-85664819 | MS.gene067145:intron | 15.0% |
| !!! | TATATTTATTTTGATTTTGC+AGG | + | chr3.1:85664799-85664818 | MS.gene067145:intron | 15.0% |
| !! | AAAACAAAGAAGATAAAAGA+AGG | - | chr3.1:85662933-85662952 | None:intergenic | 20.0% |
| !! | AAGTATGTATTCATTTCAAA+GGG | - | chr3.1:85663692-85663711 | None:intergenic | 20.0% |
| !! | ACTGAAGAAAATATTATTGT+TGG | + | chr3.1:85663033-85663052 | MS.gene067145:CDS | 20.0% |
| !! | ATAAAAGAATATATCCCATT+GGG | - | chr3.1:85663365-85663384 | None:intergenic | 20.0% |
| !! | ATCATGTAAATAACTTAAAC+TGG | - | chr3.1:85663427-85663446 | None:intergenic | 20.0% |
| !! | GTATCTTTCTATGATAAAAA+AGG | + | chr3.1:85663008-85663027 | MS.gene067145:CDS | 20.0% |
| !! | TATAAAAGAATATATCCCAT+TGG | - | chr3.1:85663366-85663385 | None:intergenic | 20.0% |
| !! | TTTATATTGTTTGTTTATGC+AGG | + | chr3.1:85662986-85663005 | MS.gene067145:intron | 20.0% |
| ! | AAAAAAATGACTGTTGTGAA+AGG | - | chr3.1:85664747-85664766 | None:intergenic | 25.0% |
| ! | AAAGAAATGATCATATACGT+TGG | - | chr3.1:85663064-85663083 | None:intergenic | 25.0% |
| ! | AAATGAATACATACTTGAAC+TGG | + | chr3.1:85663696-85663715 | MS.gene067145:intron | 25.0% |
| ! | AGCCAAAAAATAAATCAGAA+AGG | - | chr3.1:85664700-85664719 | None:intergenic | 25.0% |
| ! | AGTAATTTCATGCAAAACAT+TGG | + | chr3.1:85663882-85663901 | MS.gene067145:intron | 25.0% |
| ! | CAAACAATATAAAGATTCAG+TGG | - | chr3.1:85662979-85662998 | None:intergenic | 25.0% |
| ! | CAAATTCTCTCAAATTCTAT+AGG | - | chr3.1:85664669-85664688 | None:intergenic | 25.0% |
| ! | CAAGTATGTATTCATTTCAA+AGG | - | chr3.1:85663693-85663712 | None:intergenic | 25.0% |
| ! | CTATAGAATTTGAGAGAATT+TGG | + | chr3.1:85664667-85664686 | MS.gene067145:intron | 25.0% |
| ! | GAAAATCATATGAAAACTTC+AGG | - | chr3.1:85663854-85663873 | None:intergenic | 25.0% |
| !! | ACAATATATTTCAAAAGTGC+TGG | + | chr3.1:85664140-85664159 | MS.gene067145:CDS | 25.0% |
| !! | ACCTTGATTTTTGTAAGAAA+CGG | + | chr3.1:85662711-85662730 | MS.gene067145:CDS | 25.0% |
| !!! | AGAGTGGATTATTTGAAAAT+AGG | + | chr3.1:85663975-85663994 | MS.gene067145:CDS | 25.0% |
| !!! | CTCCTTTCTGATTTATTTTT+TGG | + | chr3.1:85664695-85664714 | MS.gene067145:intron | 25.0% |
| ATAAAGATTCAGTGGTTACA+TGG | - | chr3.1:85662971-85662990 | None:intergenic | 30.0% | |
| CAAACTGAAATTGATACTTC+TGG | - | chr3.1:85664021-85664040 | None:intergenic | 30.0% | |
| GATATCATTATGCTTAGTGT+TGG | - | chr3.1:85663948-85663967 | None:intergenic | 30.0% | |
| GATCATCATTGATGAATACT+TGG | - | chr3.1:85664059-85664078 | None:intergenic | 30.0% | |
| TATGTATTCATTTCAAAGGG+AGG | - | chr3.1:85663689-85663708 | None:intergenic | 30.0% | |
| TCTTTGTTCCTACTGAAAAA+GGG | + | chr3.1:85663079-85663098 | MS.gene067145:CDS | 30.0% | |
| TGCATTGAGTGCAATAAAAA+AGG | + | chr3.1:85663722-85663741 | MS.gene067145:intron | 30.0% | |
| TTCTTTGTTCCTACTGAAAA+AGG | + | chr3.1:85663078-85663097 | MS.gene067145:CDS | 30.0% | |
| TTTCAAATAATCCACTCTCA+AGG | - | chr3.1:85663973-85663992 | None:intergenic | 30.0% | |
| ! | CATATGAAAACTTCAGGTTT+AGG | - | chr3.1:85663848-85663867 | None:intergenic | 30.0% |
| ! | CCTTGATTTTTGTAAGAAAC+GGG | + | chr3.1:85662712-85662731 | MS.gene067145:CDS | 30.0% |
| ! | CTTGATTTTTGTAAGAAACG+GGG | + | chr3.1:85662713-85662732 | MS.gene067145:CDS | 30.0% |
| ! | GTTGATGAAAGTAAAAGACA+AGG | - | chr3.1:85663324-85663343 | None:intergenic | 30.0% |
| ! | TTCTTGATTTGAGAACAGTT+TGG | - | chr3.1:85664487-85664506 | None:intergenic | 30.0% |
| !! | AAATAGAGCTTTAAAGACCA+TGG | + | chr3.1:85663236-85663255 | MS.gene067145:CDS | 30.0% |
| !! | AATAGAGCTTTAAAGACCAT+GGG | + | chr3.1:85663237-85663256 | MS.gene067145:CDS | 30.0% |
| !! | ATGGTCTTTAAAGCTCTATT+TGG | - | chr3.1:85663237-85663256 | None:intergenic | 30.0% |
| !! | TTTCTCAACTTGCTACATAT+GGG | + | chr3.1:85662736-85662755 | MS.gene067145:CDS | 30.0% |
| !!! | TCACAACAGTCATTTTTTTG+TGG | + | chr3.1:85664748-85664767 | MS.gene067145:intron | 30.0% |
| AAATGTGTGCATCAGAACTA+TGG | - | chr3.1:85663786-85663805 | None:intergenic | 35.0% | |
| AATGATATCATCCTTGAGAG+TGG | + | chr3.1:85663959-85663978 | MS.gene067145:CDS | 35.0% | |
| AATTGGGGGGAAAAAAGAAA+AGG | - | chr3.1:85663477-85663496 | None:intergenic | 35.0% | |
| ACGGTATGAACTTAATTCTC+AGG | + | chr3.1:85664322-85664341 | MS.gene067145:intron | 35.0% | |
| ACTTCTGGCAAAAACTCAAA+AGG | - | chr3.1:85664006-85664025 | None:intergenic | 35.0% | |
| ATTCAACACAGAGACACATA+AGG | - | chr3.1:85662869-85662888 | None:intergenic | 35.0% | |
| CAACACCACTATGTCAATTT+GGG | + | chr3.1:85664278-85664297 | MS.gene067145:CDS | 35.0% | |
| CACTGAATGCAAGAAATTTC+AGG | + | chr3.1:85663612-85663631 | MS.gene067145:CDS | 35.0% | |
| CCCGTTTCTTACAAAAATCA+AGG | - | chr3.1:85662715-85662734 | None:intergenic | 35.0% | |
| GATGCACACATTTCAAAGAA+TGG | + | chr3.1:85663793-85663812 | MS.gene067145:CDS | 35.0% | |
| GGGAAAAAAGAAAAGGAAGA+AGG | - | chr3.1:85663470-85663489 | None:intergenic | 35.0% | |
| GGTGCAAAATTCGAGTAAAT+CGG | + | chr3.1:85664527-85664546 | MS.gene067145:CDS | 35.0% | |
| GTGCAAAATTCGAGTAAATC+GGG | + | chr3.1:85664528-85664547 | MS.gene067145:CDS | 35.0% | |
| TAGGGTTGTTTAAATGGTAG+AGG | - | chr3.1:85664081-85664100 | None:intergenic | 35.0% | |
| TCAACACCACTATGTCAATT+TGG | + | chr3.1:85664277-85664296 | MS.gene067145:CDS | 35.0% | |
| TCATTGATGAATACTTGGCA+CGG | - | chr3.1:85664054-85664073 | None:intergenic | 35.0% | |
| TCGTGAGTCAAATGAGAAAA+CGG | + | chr3.1:85664303-85664322 | MS.gene067145:CDS | 35.0% | |
| TGCAAAATTCGAGTAAATCG+GGG | + | chr3.1:85664529-85664548 | MS.gene067145:CDS | 35.0% | |
| TGGCCAACCTAATGAAAATT+GGG | - | chr3.1:85663493-85663512 | None:intergenic | 35.0% | |
| TTGGCCAACCTAATGAAAAT+TGG | - | chr3.1:85663494-85663513 | None:intergenic | 35.0% | |
| TTTGAGTCAACTTGTGTTCA+TGG | - | chr3.1:85664231-85664250 | None:intergenic | 35.0% | |
| ! | ACCATATCTTTTTACAGTGC+TGG | - | chr3.1:85664558-85664577 | None:intergenic | 35.0% |
| ! | AGAAATTTCAGGAGTGTGAA+AGG | + | chr3.1:85663623-85663642 | MS.gene067145:CDS | 35.0% |
| ! | ATCATTATGCTTAGTGTTGG+AGG | - | chr3.1:85663945-85663964 | None:intergenic | 35.0% |
| ! | TAATCATCCCCTTTTCTTGA+AGG | - | chr3.1:85662770-85662789 | None:intergenic | 35.0% |
| ! | TCATTATGCTTAGTGTTGGA+GGG | - | chr3.1:85663944-85663963 | None:intergenic | 35.0% |
| ! | TTTTCCCCCCAATTTTCATT+AGG | + | chr3.1:85663483-85663502 | MS.gene067145:intron | 35.0% |
| !! | GTTTCTCAACTTGCTACATA+TGG | + | chr3.1:85662735-85662754 | MS.gene067145:CDS | 35.0% |
| AATGTAGAATACCACGTTGC+AGG | + | chr3.1:85664617-85664636 | MS.gene067145:CDS | 40.0% | |
| ACACATTTCAAAGAATGGCG+AGG | + | chr3.1:85663798-85663817 | MS.gene067145:CDS | 40.0% | |
| AGGACCATTGAAAAAGAGAG+CGG | + | chr3.1:85663177-85663196 | MS.gene067145:CDS | 40.0% | |
| ATCCCATTGGGTGACTATAA+AGG | - | chr3.1:85663353-85663372 | None:intergenic | 40.0% | |
| CAGTAGTCTCCATCAAAGTA+TGG | - | chr3.1:85663132-85663151 | None:intergenic | 40.0% | |
| CATACTTTGATGGAGACTAC+TGG | + | chr3.1:85663130-85663149 | MS.gene067145:CDS | 40.0% | |
| CCAAAAGATATTGCCTACCA+GGG | + | chr3.1:85663510-85663529 | MS.gene067145:CDS | 40.0% | |
| CCAACCTAATGAAAATTGGG+GGG | - | chr3.1:85663490-85663509 | None:intergenic | 40.0% | |
| CCAGAGTAGGGTTGTTTAAA+TGG | - | chr3.1:85664087-85664106 | None:intergenic | 40.0% | |
| CCATTTAAACAACCCTACTC+TGG | + | chr3.1:85664084-85664103 | MS.gene067145:CDS | 40.0% | |
| CGATTCCCAAATTGACATAG+TGG | - | chr3.1:85664286-85664305 | None:intergenic | 40.0% | |
| CTTATAGCAAGCAGAGCAAA+TGG | - | chr3.1:85664191-85664210 | None:intergenic | 40.0% | |
| GAACAGTTTGGATAAGAGCA+TGG | - | chr3.1:85664475-85664494 | None:intergenic | 40.0% | |
| GAGAAAGAAAGACTGACCAA+CGG | - | chr3.1:85662847-85662866 | None:intergenic | 40.0% | |
| GCCAACCTAATGAAAATTGG+GGG | - | chr3.1:85663491-85663510 | None:intergenic | 40.0% | |
| GCCAGCACTGTAAAAAGATA+TGG | + | chr3.1:85664554-85664573 | MS.gene067145:CDS | 40.0% | |
| GGCCAACCTAATGAAAATTG+GGG | - | chr3.1:85663492-85663511 | None:intergenic | 40.0% | |
| TACTGAAAAAGGGAACTCCA+AGG | + | chr3.1:85663089-85663108 | MS.gene067145:CDS | 40.0% | |
| TCCCATTGGGTGACTATAAA+GGG | - | chr3.1:85663352-85663371 | None:intergenic | 40.0% | |
| TCCCTTTATAGTCACCCAAT+GGG | + | chr3.1:85663348-85663367 | MS.gene067145:intron | 40.0% | |
| TCTCGTTTGCCATACTTTGA+TGG | + | chr3.1:85663120-85663139 | MS.gene067145:CDS | 40.0% | |
| TCTTTGGCAGTGTCTTTAGA+AGG | - | chr3.1:85663273-85663292 | None:intergenic | 40.0% | |
| TTCCCTTTATAGTCACCCAA+TGG | + | chr3.1:85663347-85663366 | MS.gene067145:intron | 40.0% | |
| TTGCATCACCAGAATGTCTT+TGG | - | chr3.1:85663289-85663308 | None:intergenic | 40.0% | |
| ! | AGCTATGATGAAGTTTTCCC+TGG | - | chr3.1:85663530-85663549 | None:intergenic | 40.0% |
| ! | ATGATGAAGTTTTCCCTGGT+AGG | - | chr3.1:85663526-85663545 | None:intergenic | 40.0% |
| ! | CTACTGGTCTGGTTATGTTA+TGG | + | chr3.1:85663146-85663165 | MS.gene067145:CDS | 40.0% |
| !! | CATTTGCTCTGCTTGCTATA+AGG | + | chr3.1:85664189-85664208 | MS.gene067145:CDS | 40.0% |
| !! | TCTGCTTGCTATAAGGATAG+AGG | + | chr3.1:85664196-85664215 | MS.gene067145:CDS | 40.0% |
| !!! | TTGGAGTTCCCTTTTTCAGT+AGG | - | chr3.1:85663090-85663109 | None:intergenic | 40.0% |
| !!! | TTGGATTGTGTGCTGTTTTC+AGG | + | chr3.1:85663901-85663920 | MS.gene067145:intron | 40.0% |
| AAGCAACGCATTCCGAATCT+TGG | + | chr3.1:85664847-85664866 | MS.gene067145:CDS | 45.0% | |
| ACCATTGAAAAAGAGAGCGG+AGG | + | chr3.1:85663180-85663199 | MS.gene067145:CDS | 45.0% | |
| AGAATGATAAGCTACGCCGT+TGG | + | chr3.1:85662828-85662847 | MS.gene067145:CDS | 45.0% | |
| AGACACTGCCAAAGACATTC+TGG | + | chr3.1:85663278-85663297 | MS.gene067145:CDS | 45.0% | |
| AGCTATTCTCTCATGCTCGT+AGG | + | chr3.1:85664506-85664525 | MS.gene067145:CDS | 45.0% | |
| AGTCTTTGCAATTCCTGGAG+TGG | - | chr3.1:85664594-85664613 | None:intergenic | 45.0% | |
| CAAACGAGAAGTTGTCACCT+TGG | - | chr3.1:85663109-85663128 | None:intergenic | 45.0% | |
| CCTGTGCTCCTTCAAGAAAA+GGG | + | chr3.1:85662759-85662778 | MS.gene067145:CDS | 45.0% | |
| CGGCGTAGCTTATCATTCTT+CGG | - | chr3.1:85662827-85662846 | None:intergenic | 45.0% | |
| CTCCAGGAATTGCAAAGACT+CGG | + | chr3.1:85664594-85664613 | MS.gene067145:CDS | 45.0% | |
| CTGTGCTCCTTCAAGAAAAG+GGG | + | chr3.1:85662760-85662779 | MS.gene067145:CDS | 45.0% | |
| GCAGAGCAAATGGTACATTC+TGG | - | chr3.1:85664181-85664200 | None:intergenic | 45.0% | |
| GCATGGTTCAGCATTAGTTG+CGG | - | chr3.1:85664458-85664477 | None:intergenic | 45.0% | |
| GCCAAAAGATATTGCCTACC+AGG | + | chr3.1:85663509-85663528 | MS.gene067145:CDS | 45.0% | |
| GCCATGAAGTGATAGCATCT+GGG | + | chr3.1:85663575-85663594 | MS.gene067145:CDS | 45.0% | |
| GTCTTTGCAATTCCTGGAGT+GGG | - | chr3.1:85664593-85664612 | None:intergenic | 45.0% | |
| GTTATGTTATGGAAGCAGCC+AGG | + | chr3.1:85663157-85663176 | MS.gene067145:CDS | 45.0% | |
| TCCCAGATGCTATCACTTCA+TGG | - | chr3.1:85663579-85663598 | None:intergenic | 45.0% | |
| TGCCATGAAGTGATAGCATC+TGG | + | chr3.1:85663574-85663593 | MS.gene067145:CDS | 45.0% | |
| TTATACTAACTGCCCACTCC+AGG | + | chr3.1:85664578-85664597 | MS.gene067145:CDS | 45.0% | |
| TTCCAACAGTCACCAGAGTA+GGG | - | chr3.1:85664099-85664118 | None:intergenic | 45.0% | |
| TTCCGAGTCTTTGCAATTCC+TGG | - | chr3.1:85664599-85664618 | None:intergenic | 45.0% | |
| TTGATGAATACTTGGCACGG+CGG | - | chr3.1:85664051-85664070 | None:intergenic | 45.0% | |
| TTTCCAACAGTCACCAGAGT+AGG | - | chr3.1:85664100-85664119 | None:intergenic | 45.0% | |
| TTTGATGGAGACTACTGGTC+TGG | + | chr3.1:85663135-85663154 | MS.gene067145:CDS | 45.0% | |
| ! | CCCCCCAATTTTCATTAGGT+TGG | + | chr3.1:85663487-85663506 | MS.gene067145:intron | 45.0% |
| ! | CCCTGGTAGGCAATATCTTT+TGG | - | chr3.1:85663513-85663532 | None:intergenic | 45.0% |
| ! | GGCAGTGTCTTTAGAAGGAT+TGG | - | chr3.1:85663268-85663287 | None:intergenic | 45.0% |
| ! | TTCGGAGTCTTTTGCTCTTC+AGG | - | chr3.1:85662809-85662828 | None:intergenic | 45.0% |
| !!! | GCTCTCTTTTTCAATGGTCC+TGG | - | chr3.1:85663178-85663197 | None:intergenic | 45.0% |
| !!! | TCCTCCGCTCTCTTTTTCAA+TGG | - | chr3.1:85663184-85663203 | None:intergenic | 45.0% |
| AACCCTACTCTGGTGACTGT+TGG | + | chr3.1:85664094-85664113 | MS.gene067145:CDS | 50.0% | |
| CGAGGTGCATACACTATGTC+AGG | + | chr3.1:85663816-85663835 | MS.gene067145:CDS | 50.0% | |
| GCCTGTGCTCCTTCAAGAAA+AGG | + | chr3.1:85662758-85662777 | MS.gene067145:CDS | 50.0% | |
| TGATAGCATCTGGGAAGCGA+TGG | + | chr3.1:85663584-85663603 | MS.gene067145:CDS | 50.0% | |
| ! | AGAAGGATTGGCATGTCCCA+TGG | - | chr3.1:85663256-85663275 | None:intergenic | 50.0% |
| !! | CCCTTTTCTTGAAGGAGCAC+AGG | - | chr3.1:85662762-85662781 | None:intergenic | 50.0% |
| ACAGTCACACACCTGCAACG+TGG | - | chr3.1:85664631-85664650 | None:intergenic | 55.0% | |
| ACGCATTCCGAATCTTGGCG+TGG | + | chr3.1:85664852-85664871 | MS.gene067145:CDS | 55.0% | |
| CACGCAGATGCTGAAACTGC+TGG | + | chr3.1:85664405-85664424 | MS.gene067145:intron | 55.0% | |
| TGCAGCTCCACGCCAAGATT+CGG | - | chr3.1:85664862-85664881 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 85662704 | 85664917 | 85662704 | ID=MS.gene067145 |
| chr3.1 | mRNA | 85662704 | 85664917 | 85662704 | ID=MS.gene067145.t1;Parent=MS.gene067145 |
| chr3.1 | exon | 85662704 | 85662849 | 85662704 | ID=MS.gene067145.t1.exon1;Parent=MS.gene067145.t1 |
| chr3.1 | CDS | 85662704 | 85662849 | 85662704 | ID=cds.MS.gene067145.t1;Parent=MS.gene067145.t1 |
| chr3.1 | exon | 85663008 | 85663311 | 85663008 | ID=MS.gene067145.t1.exon2;Parent=MS.gene067145.t1 |
| chr3.1 | CDS | 85663008 | 85663311 | 85663008 | ID=cds.MS.gene067145.t1;Parent=MS.gene067145.t1 |
| chr3.1 | exon | 85663505 | 85663644 | 85663505 | ID=MS.gene067145.t1.exon3;Parent=MS.gene067145.t1 |
| chr3.1 | CDS | 85663505 | 85663644 | 85663505 | ID=cds.MS.gene067145.t1;Parent=MS.gene067145.t1 |
| chr3.1 | exon | 85663780 | 85663837 | 85663780 | ID=MS.gene067145.t1.exon4;Parent=MS.gene067145.t1 |
| chr3.1 | CDS | 85663780 | 85663837 | 85663780 | ID=cds.MS.gene067145.t1;Parent=MS.gene067145.t1 |
| chr3.1 | exon | 85663923 | 85664324 | 85663923 | ID=MS.gene067145.t1.exon5;Parent=MS.gene067145.t1 |
| chr3.1 | CDS | 85663923 | 85664324 | 85663923 | ID=cds.MS.gene067145.t1;Parent=MS.gene067145.t1 |
| chr3.1 | exon | 85664412 | 85664638 | 85664412 | ID=MS.gene067145.t1.exon6;Parent=MS.gene067145.t1 |
| chr3.1 | CDS | 85664412 | 85664638 | 85664412 | ID=cds.MS.gene067145.t1;Parent=MS.gene067145.t1 |
| chr3.1 | exon | 85664821 | 85664917 | 85664821 | ID=MS.gene067145.t1.exon7;Parent=MS.gene067145.t1 |
| chr3.1 | CDS | 85664821 | 85664917 | 85664821 | ID=cds.MS.gene067145.t1;Parent=MS.gene067145.t1 |
| Gene Sequence |
| Protein sequence |
