Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069352.t1 | XP_003621056.2 | 91.3 | 173 | 15 | 0 | 1 | 173 | 6 | 178 | 6.60E-89 | 336.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069352.t1 | Q9SXZ2 | 66.5 | 170 | 56 | 1 | 2 | 171 | 7 | 175 | 3.0e-66 | 252.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069352.t1 | G7KXR8 | 91.3 | 173 | 15 | 0 | 1 | 173 | 1 | 173 | 4.7e-89 | 336.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene069352 | 0.838012 | 3.70E-57 | -1.69E-46 |
| MS.gene049600 | MS.gene069352 | 0.822777 | 1.98E-53 | -1.69E-46 |
| MS.gene05010 | MS.gene069352 | 0.824985 | 6.00E-54 | -1.69E-46 |
| MS.gene050170 | MS.gene069352 | 0.809112 | 2.22E-50 | -1.69E-46 |
| MS.gene050323 | MS.gene069352 | 0.816543 | 5.24E-52 | -1.69E-46 |
| MS.gene050496 | MS.gene069352 | 0.835236 | 1.89E-56 | -1.69E-46 |
| MS.gene050502 | MS.gene069352 | 0.803049 | 4.20E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene069352 | 0.81485 | 1.25E-51 | -1.69E-46 |
| MS.gene050986 | MS.gene069352 | 0.804879 | 1.75E-49 | -1.69E-46 |
| MS.gene05118 | MS.gene069352 | 0.81288 | 3.39E-51 | -1.69E-46 |
| MS.gene051551 | MS.gene069352 | 0.824267 | 8.85E-54 | -1.69E-46 |
| MS.gene051560 | MS.gene069352 | 0.807956 | 3.92E-50 | -1.69E-46 |
| MS.gene053626 | MS.gene069352 | 0.801929 | 7.14E-49 | -1.69E-46 |
| MS.gene053633 | MS.gene069352 | 0.810735 | 9.94E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene069352 | 0.801451 | 8.95E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene069352 | 0.826032 | 3.39E-54 | -1.69E-46 |
| MS.gene056046 | MS.gene069352 | 0.841098 | 5.84E-58 | -1.69E-46 |
| MS.gene056504 | MS.gene069352 | 0.839104 | 1.93E-57 | -1.69E-46 |
| MS.gene056510 | MS.gene069352 | 0.813597 | 2.36E-51 | -1.69E-46 |
| MS.gene05787 | MS.gene069352 | 0.803874 | 2.83E-49 | -1.69E-46 |
| MS.gene059367 | MS.gene069352 | 0.808118 | 3.62E-50 | -1.69E-46 |
| MS.gene059837 | MS.gene069352 | 0.839045 | 2.00E-57 | -1.69E-46 |
| MS.gene059865 | MS.gene069352 | 0.824324 | 8.59E-54 | -1.69E-46 |
| MS.gene06000 | MS.gene069352 | 0.823502 | 1.34E-53 | -1.69E-46 |
| MS.gene060482 | MS.gene069352 | 0.801002 | 1.11E-48 | -1.69E-46 |
| MS.gene060703 | MS.gene069352 | 0.802802 | 4.72E-49 | -1.69E-46 |
| MS.gene060778 | MS.gene069352 | 0.844846 | 5.87E-59 | -1.69E-46 |
| MS.gene06077 | MS.gene069352 | 0.808092 | 3.67E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene069352 | 0.811557 | 6.60E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069352.t1 | MTR_7g006630 | 91.329 | 173 | 15 | 0 | 1 | 173 | 1 | 173 | 1.59e-117 | 330 |
| MS.gene069352.t1 | MTR_7g006690 | 91.860 | 172 | 14 | 0 | 2 | 173 | 7 | 178 | 1.41e-116 | 327 |
| MS.gene069352.t1 | MTR_6g033040 | 70.000 | 170 | 50 | 1 | 2 | 171 | 7 | 175 | 1.83e-86 | 251 |
| MS.gene069352.t1 | MTR_7g084970 | 71.429 | 168 | 47 | 1 | 2 | 169 | 7 | 173 | 3.06e-86 | 251 |
| MS.gene069352.t1 | MTR_7g085020 | 64.881 | 168 | 58 | 1 | 2 | 169 | 8 | 174 | 1.22e-77 | 229 |
| MS.gene069352.t1 | MTR_7g085040 | 63.190 | 163 | 58 | 2 | 8 | 170 | 10 | 170 | 8.17e-73 | 217 |
| MS.gene069352.t1 | MTR_0020s0120 | 53.846 | 169 | 77 | 1 | 1 | 169 | 5 | 172 | 2.11e-63 | 193 |
| MS.gene069352.t1 | MTR_7g104460 | 53.571 | 168 | 76 | 2 | 3 | 169 | 8 | 174 | 6.68e-61 | 186 |
| MS.gene069352.t1 | MTR_1g060190 | 51.875 | 160 | 74 | 2 | 2 | 159 | 7 | 165 | 1.93e-58 | 180 |
| MS.gene069352.t1 | MTR_0020s0120 | 52.071 | 169 | 73 | 2 | 1 | 169 | 5 | 165 | 3.53e-58 | 179 |
| MS.gene069352.t1 | MTR_2g086270 | 46.746 | 169 | 88 | 2 | 2 | 169 | 6 | 173 | 6.27e-56 | 174 |
| MS.gene069352.t1 | MTR_8g106840 | 50.610 | 164 | 78 | 3 | 1 | 163 | 6 | 167 | 6.00e-47 | 151 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069352.t1 | AT1G65480 | 66.471 | 170 | 56 | 1 | 2 | 171 | 51 | 219 | 2.10e-85 | 250 |
| MS.gene069352.t1 | AT1G65480 | 66.471 | 170 | 56 | 1 | 2 | 171 | 7 | 175 | 2.11e-85 | 249 |
| MS.gene069352.t1 | AT4G20370 | 67.456 | 169 | 54 | 1 | 2 | 170 | 7 | 174 | 3.30e-83 | 243 |
| MS.gene069352.t1 | AT5G62040 | 53.614 | 166 | 76 | 1 | 1 | 165 | 5 | 170 | 3.46e-62 | 190 |
| MS.gene069352.t1 | AT5G03840 | 53.216 | 171 | 76 | 3 | 1 | 169 | 9 | 177 | 2.53e-60 | 185 |
| MS.gene069352.t1 | AT2G27550 | 49.112 | 169 | 85 | 1 | 2 | 169 | 7 | 175 | 3.53e-59 | 182 |
| MS.gene069352.t1 | AT1G18100 | 50.292 | 171 | 81 | 3 | 1 | 169 | 5 | 173 | 2.32e-49 | 157 |
Find 53 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATTGTCAACGAGAAAA+TGG | 0.223614 | 7.1:+87569919 | MS.gene069352:CDS |
| CTTGTGGTTTGTGGTGTAAT+TGG | 0.261555 | 7.1:+87567387 | MS.gene069352:CDS |
| TTTGCAGAAGTTTACAATCT+TGG | 0.279344 | 7.1:+87569874 | MS.gene069352:CDS |
| GTGTAATATTTGTGTTGTTT+AGG | 0.306242 | 7.1:+87569791 | MS.gene069352:CDS |
| TGGTGTAATTGGAGATGTTT+TGG | 0.321102 | 7.1:+87567398 | MS.gene069352:CDS |
| CCCCGTAGTAGCTGGAATAT+TGG | 0.377807 | 7.1:-87569063 | None:intergenic |
| TTTCCACCAACTTGAACTCT+TGG | 0.407751 | 7.1:-87567519 | None:intergenic |
| TTACAAATTCAGTGTCTTTG+AGG | 0.412870 | 7.1:+87567427 | MS.gene069352:CDS |
| TTACTAGGGCTTGGTGCATC+AGG | 0.418391 | 7.1:-87568098 | None:intergenic |
| TGAATCCCTGATGTTGGTCT+TGG | 0.418940 | 7.1:-87569766 | None:intergenic |
| ATGAATCCTCTTGTGGTTTG+TGG | 0.422228 | 7.1:+87567378 | MS.gene069352:CDS |
| TGTCAACGAGAAAATGGTTC+TGG | 0.429526 | 7.1:+87569925 | MS.gene069352:CDS |
| CCACCAACTTGAACTCTTGG+TGG | 0.429744 | 7.1:-87567516 | None:intergenic |
| CACCAACTTGAACTCTTGGT+GGG | 0.432832 | 7.1:-87567515 | None:intergenic |
| TACAAATTCAGTGTCTTTGA+GGG | 0.441798 | 7.1:+87567428 | MS.gene069352:CDS |
| TGTTGTTTAGGCAACCTTGT+AGG | 0.444815 | 7.1:+87569803 | MS.gene069352:CDS |
| GCCCTAGTAACCCGACTATG+AGG | 0.448204 | 7.1:+87568111 | MS.gene069352:CDS |
| AAAGACACTGAATTTGTAAA+GGG | 0.449639 | 7.1:-87567423 | None:intergenic |
| CCCTCATAGTCGGGTTACTA+GGG | 0.451139 | 7.1:-87568112 | None:intergenic |
| AACGTTGTCCCCGTAGTAGC+TGG | 0.452584 | 7.1:-87569071 | None:intergenic |
| CTATGAGGGAATACCTGTAT+TGG | 0.464941 | 7.1:+87568126 | MS.gene069352:CDS |
| CAAAGACACTGAATTTGTAA+AGG | 0.477373 | 7.1:-87567424 | None:intergenic |
| GAAAGTCCAAGACCAACATC+AGG | 0.479268 | 7.1:+87569760 | MS.gene069352:CDS |
| TTGAAATAGAGAGCAGCAAC+AGG | 0.483630 | 7.1:-87569901 | None:intergenic |
| AACCAATATTCCAGCTACTA+CGG | 0.486996 | 7.1:+87569061 | MS.gene069352:CDS |
| TCCCTCATAGTCGGGTTACT+AGG | 0.493000 | 7.1:-87568113 | None:intergenic |
| ACCAATATTCCAGCTACTAC+GGG | 0.499624 | 7.1:+87569062 | MS.gene069352:CDS |
| TAGTTCCCACTTACCAATAC+AGG | 0.507722 | 7.1:-87568139 | None:intergenic |
| ATAGTCGGGTTACTAGGGCT+TGG | 0.513582 | 7.1:-87568107 | None:intergenic |
| TAAATCAATGAATCCTCTTG+TGG | 0.519287 | 7.1:+87567371 | None:intergenic |
| ACAGGTATTCCCTCATAGTC+GGG | 0.521375 | 7.1:-87568121 | None:intergenic |
| GCTACTACGGGGACAACGTT+CGG | 0.524322 | 7.1:+87569074 | MS.gene069352:CDS |
| TGGTGGGTTGACTATTTGAG+AGG | 0.531184 | 7.1:-87567499 | None:intergenic |
| CCACCAAGAGTTCAAGTTGG+TGG | 0.537101 | 7.1:+87567516 | MS.gene069352:CDS |
| AAGTTGGTGGAAATGACCTC+AGG | 0.538516 | 7.1:+87567529 | MS.gene069352:CDS |
| TACAGGTATTCCCTCATAGT+CGG | 0.540396 | 7.1:-87568122 | None:intergenic |
| GGTGGGTTGACTATTTGAGA+GGG | 0.541792 | 7.1:-87567498 | None:intergenic |
| GAGAAAATGGTTCTGGTGGA+AGG | 0.541973 | 7.1:+87569932 | MS.gene069352:CDS |
| GCTAATATATTGTGCCTACA+AGG | 0.564781 | 7.1:-87569817 | None:intergenic |
| AGGCACAATATATTAGCTCC+AGG | 0.568581 | 7.1:+87569823 | MS.gene069352:CDS |
| CAACGAGAAAATGGTTCTGG+TGG | 0.575115 | 7.1:+87569928 | MS.gene069352:CDS |
| ACACGTTGAATCCCTGATGT+TGG | 0.579833 | 7.1:-87569772 | None:intergenic |
| CCCTAGTAACCCGACTATGA+GGG | 0.593212 | 7.1:+87568112 | MS.gene069352:CDS |
| TGGTTCTGGTGGAAGGAGGA+TGG | 0.594121 | 7.1:+87569939 | MS.gene069352:CDS |
| ATTACACCACAAACCACAAG+AGG | 0.610357 | 7.1:-87567384 | None:intergenic |
| AAAGTCCAAGACCAACATCA+GGG | 0.617461 | 7.1:+87569761 | MS.gene069352:CDS |
| ACAATATATTAGCTCCAGGA+TGG | 0.638416 | 7.1:+87569827 | MS.gene069352:CDS |
| CCTCAGGACTCTATACACTC+TGG | 0.640356 | 7.1:+87567545 | MS.gene069352:CDS |
| AAAATGGTTCTGGTGGAAGG+AGG | 0.645300 | 7.1:+87569935 | MS.gene069352:CDS |
| AACCCACCAAGAGTTCAAGT+TGG | 0.662077 | 7.1:+87567513 | MS.gene069352:CDS |
| AACAAAGAAGTCATCAACAG+TGG | 0.676788 | 7.1:+87567465 | MS.gene069352:CDS |
| CCAATATTCCAGCTACTACG+GGG | 0.711639 | 7.1:+87569063 | MS.gene069352:CDS |
| CCAGAGTGTATAGAGTCCTG+AGG | 0.732541 | 7.1:-87567545 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTAAAATAATTTATAGAA+TGG | + | chr7.1:87568270-87568289 | MS.gene069352:intron | 10.0% |
| !! | TTAATATTCAAATTTAACAT+TGG | - | chr7.1:87569270-87569289 | None:intergenic | 10.0% |
| !! | AAAGAATTACCATATATAAA+TGG | + | chr7.1:87567637-87567656 | MS.gene069352:intron | 15.0% |
| !! | AATGAAAAAAAAAAACAGTT+AGG | + | chr7.1:87567913-87567932 | MS.gene069352:intron | 15.0% |
| !! | ATAAAAAAAAAAGTCGAAAA+TGG | + | chr7.1:87568703-87568722 | MS.gene069352:intron | 15.0% |
| !!! | AAAATTTATTTTCAAGTTTG+GGG | - | chr7.1:87567796-87567815 | None:intergenic | 15.0% |
| !!! | GAAAATTTATTTTCAAGTTT+GGG | - | chr7.1:87567797-87567816 | None:intergenic | 15.0% |
| !!! | GTTTATCAAATTAAAGTTTT+TGG | - | chr7.1:87567753-87567772 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTTTTCATTTCAA+GGG | - | chr7.1:87567909-87567928 | None:intergenic | 15.0% |
| !!! | TGAAAATTTATTTTCAAGTT+TGG | - | chr7.1:87567798-87567817 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTTTTTCATTTCA+AGG | - | chr7.1:87567910-87567929 | None:intergenic | 15.0% |
| !!! | TTTATTTATTTTTCATGAGT+CGG | - | chr7.1:87569219-87569238 | None:intergenic | 15.0% |
| !!! | TTTTGCAATATGTATTATTT+AGG | - | chr7.1:87567835-87567854 | None:intergenic | 15.0% |
| !! | ATTACAACAAGGATATAAAT+GGG | - | chr7.1:87569189-87569208 | None:intergenic | 20.0% |
| !! | CATACAAATTAAACCTAATT+GGG | + | chr7.1:87567972-87567991 | MS.gene069352:intron | 20.0% |
| !! | TATTACAACAAGGATATAAA+TGG | - | chr7.1:87569190-87569209 | None:intergenic | 20.0% |
| !!! | AAATTATGAACCCAATTTTA+AGG | + | chr7.1:87569155-87569174 | MS.gene069352:intron | 20.0% |
| !!! | AAATTTATTTTCAAGTTTGG+GGG | - | chr7.1:87567795-87567814 | None:intergenic | 20.0% |
| !!! | ATGTTGTTTGAATTAATTGT+AGG | + | chr7.1:87569718-87569737 | MS.gene069352:intron | 20.0% |
| !!! | TTATATTTTTTTGACTGATG+AGG | + | chr7.1:87569455-87569474 | MS.gene069352:intron | 20.0% |
| !!! | TTGAGCTTACATTTTTTTTA+CGG | + | chr7.1:87569303-87569322 | MS.gene069352:intron | 20.0% |
| ! | AAAGACACTGAATTTGTAAA+GGG | - | chr7.1:87567426-87567445 | None:intergenic | 25.0% |
| ! | AAATATTTAACAAGCCCATA+TGG | - | chr7.1:87568166-87568185 | None:intergenic | 25.0% |
| ! | AACATGATATAGTTCATGTT+TGG | + | chr7.1:87568527-87568546 | MS.gene069352:intron | 25.0% |
| ! | AAGTATAGATTTCTGAATGT+TGG | - | chr7.1:87569533-87569552 | None:intergenic | 25.0% |
| ! | AATATTTAACAAGCCCATAT+GGG | - | chr7.1:87568165-87568184 | None:intergenic | 25.0% |
| ! | CCATACAAATTAAACCTAAT+TGG | + | chr7.1:87567971-87567990 | MS.gene069352:intron | 25.0% |
| ! | TATTAAGAATGATCCCAATT+AGG | - | chr7.1:87567988-87568007 | None:intergenic | 25.0% |
| ! | TTCATTGACAAAATGAAACA+AGG | + | chr7.1:87568475-87568494 | MS.gene069352:intron | 25.0% |
| !! | ATTAAAGCCTTTTCTTTCTA+GGG | + | chr7.1:87568035-87568054 | MS.gene069352:intron | 25.0% |
| !!! | AACCCAATTTTAAGGATAAA+CGG | + | chr7.1:87569163-87569182 | MS.gene069352:intron | 25.0% |
| !!! | AATTTATTTTCAAGTTTGGG+GGG | - | chr7.1:87567794-87567813 | None:intergenic | 25.0% |
| !!! | ATTAGGTTTAATTTGTATGG+AGG | - | chr7.1:87567971-87567990 | None:intergenic | 25.0% |
| !!! | CCAATTAGGTTTAATTTGTA+TGG | - | chr7.1:87567974-87567993 | None:intergenic | 25.0% |
| !!! | CTTACATTTTTTTTACGGAT+GGG | + | chr7.1:87569308-87569327 | MS.gene069352:intron | 25.0% |
| !!! | GTGTAATATTTGTGTTGTTT+AGG | + | chr7.1:87569791-87569810 | MS.gene069352:CDS | 25.0% |
| !!! | TCAAATTAAAGTTTTTGGCT+AGG | - | chr7.1:87567748-87567767 | None:intergenic | 25.0% |
| !!! | TTACATTTTTTTGACTGATG+AGG | + | chr7.1:87569382-87569401 | MS.gene069352:intron | 25.0% |
| !!! | TTACATTTTTTTTACGGATG+GGG | + | chr7.1:87569309-87569328 | MS.gene069352:intron | 25.0% |
| AGACAGTGAGAATAAAGTAT+GGG | - | chr7.1:87568852-87568871 | None:intergenic | 30.0% | |
| ATTGGTTACCATCCTAATTA+AGG | - | chr7.1:87569048-87569067 | None:intergenic | 30.0% | |
| CAAAGACACTGAATTTGTAA+AGG | - | chr7.1:87567427-87567446 | None:intergenic | 30.0% | |
| GGAATGGTTTATTCTATAAG+TGG | - | chr7.1:87567717-87567736 | None:intergenic | 30.0% | |
| GTATACATATGTGTGTGATT+TGG | + | chr7.1:87568959-87568978 | MS.gene069352:intron | 30.0% | |
| TACAAATTCAGTGTCTTTGA+GGG | + | chr7.1:87567428-87567447 | MS.gene069352:CDS | 30.0% | |
| TACCCCTTAAGAGAAAATTA+GGG | + | chr7.1:87567682-87567701 | MS.gene069352:intron | 30.0% | |
| TAGACAGTGAGAATAAAGTA+TGG | - | chr7.1:87568853-87568872 | None:intergenic | 30.0% | |
| TCAAAAACCCTAGAAAGAAA+AGG | - | chr7.1:87568045-87568064 | None:intergenic | 30.0% | |
| TCGGAACTATTATTACAACA+AGG | - | chr7.1:87569200-87569219 | None:intergenic | 30.0% | |
| TTACAAATTCAGTGTCTTTG+AGG | + | chr7.1:87567427-87567446 | MS.gene069352:CDS | 30.0% | |
| TTCAATTGTCAACGAGAAAA+TGG | + | chr7.1:87569919-87569938 | MS.gene069352:CDS | 30.0% | |
| TTTGCAGAAGTTTACAATCT+TGG | + | chr7.1:87569874-87569893 | MS.gene069352:CDS | 30.0% | |
| ! | ATGCTTAATTTTGTGTCAAC+TGG | + | chr7.1:87568776-87568795 | MS.gene069352:intron | 30.0% |
| ! | GATTAAAGCCTTTTCTTTCT+AGG | + | chr7.1:87568034-87568053 | MS.gene069352:intron | 30.0% |
| ! | GTTATAGTCTTACATAAGCA+TGG | - | chr7.1:87568229-87568248 | None:intergenic | 30.0% |
| ! | TGACCCTAATTTTCTCTTAA+GGG | - | chr7.1:87567688-87567707 | None:intergenic | 30.0% |
| ! | TTGACCCTAATTTTCTCTTA+AGG | - | chr7.1:87567689-87567708 | None:intergenic | 30.0% |
| !! | GTGATTTGGAAACTTTTGTT+TGG | + | chr7.1:87568973-87568992 | MS.gene069352:intron | 30.0% |
| !! | GTTTAATTTGTATGGAGGTA+AGG | - | chr7.1:87567966-87567985 | None:intergenic | 30.0% |
| !!! | ATTTTTTTGACTGATGAGGA+TGG | + | chr7.1:87569386-87569405 | MS.gene069352:intron | 30.0% |
| !!! | GCTTACATTTTTTTTACGGA+TGG | + | chr7.1:87569307-87569326 | MS.gene069352:intron | 30.0% |
| !!! | TTTTTTCATTTCAAGGGTGT+TGG | - | chr7.1:87567903-87567922 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTCCTTCCTTCGT+TGG | + | chr7.1:87569020-87569039 | MS.gene069352:intron | 30.0% |
| AACAAAGAAGTCATCAACAG+TGG | + | chr7.1:87567465-87567484 | MS.gene069352:CDS | 35.0% | |
| AACCAATATTCCAGCTACTA+CGG | + | chr7.1:87569061-87569080 | MS.gene069352:CDS | 35.0% | |
| ACAATATATTAGCTCCAGGA+TGG | + | chr7.1:87569827-87569846 | MS.gene069352:CDS | 35.0% | |
| AGTAGTAAACTTGAGAACCT+AGG | - | chr7.1:87568308-87568327 | None:intergenic | 35.0% | |
| CTACCCCTTAAGAGAAAATT+AGG | + | chr7.1:87567681-87567700 | MS.gene069352:intron | 35.0% | |
| GCTAATATATTGTGCCTACA+AGG | - | chr7.1:87569820-87569839 | None:intergenic | 35.0% | |
| GGCCGTTTATCCTTAAAATT+GGG | - | chr7.1:87569168-87569187 | None:intergenic | 35.0% | |
| GGGTAGCTTTCTTATATCTT+CGG | - | chr7.1:87567667-87567686 | None:intergenic | 35.0% | |
| GGTAGCTTTCTTATATCTTC+GGG | - | chr7.1:87567666-87567685 | None:intergenic | 35.0% | |
| GTAGCTTTCTTATATCTTCG+GGG | - | chr7.1:87567665-87567684 | None:intergenic | 35.0% | |
| TAGGATCATCCACTAACTAT+CGG | - | chr7.1:87568423-87568442 | None:intergenic | 35.0% | |
| TTCGGGGATCCATTTATATA+TGG | - | chr7.1:87567649-87567668 | None:intergenic | 35.0% | |
| ! | ACTATCGGACTTAAGGATTT+TGG | - | chr7.1:87568408-87568427 | None:intergenic | 35.0% |
| ! | AGTTTGTGGCACTAATTTTC+AGG | + | chr7.1:87568064-87568083 | MS.gene069352:intron | 35.0% |
| ! | GAATACCTGTATTGGTAAGT+GGG | + | chr7.1:87568134-87568153 | MS.gene069352:intron | 35.0% |
| ! | GACCCTAATTTTCTCTTAAG+GGG | - | chr7.1:87567687-87567706 | None:intergenic | 35.0% |
| ! | TGGTGTAATTGGAGATGTTT+TGG | + | chr7.1:87567398-87567417 | MS.gene069352:CDS | 35.0% |
| !!! | TGGCACTAATTTTCAGGTAA+TGG | + | chr7.1:87568070-87568089 | MS.gene069352:intron | 35.0% |
| !!! | TTCTAGGGTTTTTGAGTTTG+TGG | + | chr7.1:87568050-87568069 | MS.gene069352:intron | 35.0% |
| AAAGTCCAAGACCAACATCA+GGG | + | chr7.1:87569761-87569780 | MS.gene069352:CDS | 40.0% | |
| ACCAATATTCCAGCTACTAC+GGG | + | chr7.1:87569062-87569081 | MS.gene069352:CDS | 40.0% | |
| AGGCACAATATATTAGCTCC+AGG | + | chr7.1:87569823-87569842 | MS.gene069352:CDS | 40.0% | |
| ATGAATCCTCTTGTGGTTTG+TGG | + | chr7.1:87567378-87567397 | MS.gene069352:CDS | 40.0% | |
| ATTAAGGATCCAACGAAGGA+AGG | - | chr7.1:87569032-87569051 | None:intergenic | 40.0% | |
| ATTACACCACAAACCACAAG+AGG | - | chr7.1:87567387-87567406 | None:intergenic | 40.0% | |
| CCTAATTAAGGATCCAACGA+AGG | - | chr7.1:87569036-87569055 | None:intergenic | 40.0% | |
| CCTTCGTTGGATCCTTAATT+AGG | + | chr7.1:87569033-87569052 | MS.gene069352:intron | 40.0% | |
| CGTTGGATCCTTAATTAGGA+TGG | + | chr7.1:87569037-87569056 | MS.gene069352:intron | 40.0% | |
| CTATGAGGGAATACCTGTAT+TGG | + | chr7.1:87568126-87568145 | MS.gene069352:CDS | 40.0% | |
| CTTAACTAGTCACATGTGCT+TGG | - | chr7.1:87568504-87568523 | None:intergenic | 40.0% | |
| CTTACATAAGCATGGTGTCT+TGG | - | chr7.1:87568221-87568240 | None:intergenic | 40.0% | |
| GGGCCGTTTATCCTTAAAAT+TGG | - | chr7.1:87569169-87569188 | None:intergenic | 40.0% | |
| GGTACGTGCAAAATTCTCTT+GGG | + | chr7.1:87569095-87569114 | MS.gene069352:intron | 40.0% | |
| TAAGTGGGAACTACCCATAT+GGG | + | chr7.1:87568149-87568168 | MS.gene069352:intron | 40.0% | |
| TACAGGTATTCCCTCATAGT+CGG | - | chr7.1:87568125-87568144 | None:intergenic | 40.0% | |
| TAGTTCCCACTTACCAATAC+AGG | - | chr7.1:87568142-87568161 | None:intergenic | 40.0% | |
| TCCACTAACTATCGGACTTA+AGG | - | chr7.1:87568415-87568434 | None:intergenic | 40.0% | |
| TCCTTAAGTCCGATAGTTAG+TGG | + | chr7.1:87568411-87568430 | MS.gene069352:intron | 40.0% | |
| TGTCAACGAGAAAATGGTTC+TGG | + | chr7.1:87569925-87569944 | MS.gene069352:CDS | 40.0% | |
| TTGAAATAGAGAGCAGCAAC+AGG | - | chr7.1:87569904-87569923 | None:intergenic | 40.0% | |
| TTTCCACCAACTTGAACTCT+TGG | - | chr7.1:87567522-87567541 | None:intergenic | 40.0% | |
| ! | AATGGCATACGCTATTTCCT+AGG | + | chr7.1:87568288-87568307 | MS.gene069352:intron | 40.0% |
| ! | CTTGTGGTTTGTGGTGTAAT+TGG | + | chr7.1:87567387-87567406 | MS.gene069352:CDS | 40.0% |
| ! | GGAATACCTGTATTGGTAAG+TGG | + | chr7.1:87568133-87568152 | MS.gene069352:intron | 40.0% |
| ! | TGTTGTTTAGGCAACCTTGT+AGG | + | chr7.1:87569803-87569822 | MS.gene069352:CDS | 40.0% |
| ! | TTGAAATTTTGTCGCCATCC+TGG | - | chr7.1:87569844-87569863 | None:intergenic | 40.0% |
| !! | TTTCATTTCAAGGGTGTTGG+AGG | - | chr7.1:87567900-87567919 | None:intergenic | 40.0% |
| !!! | GTTTTTGGCTAGGACAAAGA+AGG | - | chr7.1:87567738-87567757 | None:intergenic | 40.0% |
| AACCCACCAAGAGTTCAAGT+TGG | + | chr7.1:87567513-87567532 | MS.gene069352:CDS | 45.0% | |
| ACACGTTGAATCCCTGATGT+TGG | - | chr7.1:87569775-87569794 | None:intergenic | 45.0% | |
| ACAGGTATTCCCTCATAGTC+GGG | - | chr7.1:87568124-87568143 | None:intergenic | 45.0% | |
| AGGACTCTATACACTCTGGT+TGG | + | chr7.1:87567549-87567568 | MS.gene069352:intron | 45.0% | |
| CACCAACTTGAACTCTTGGT+GGG | - | chr7.1:87567518-87567537 | None:intergenic | 45.0% | |
| CCAATATTCCAGCTACTACG+GGG | + | chr7.1:87569063-87569082 | MS.gene069352:CDS | 45.0% | |
| CGGTACGTGCAAAATTCTCT+TGG | + | chr7.1:87569094-87569113 | MS.gene069352:intron | 45.0% | |
| GAAAGTCCAAGACCAACATC+AGG | + | chr7.1:87569760-87569779 | MS.gene069352:CDS | 45.0% | |
| GTAAGTGGGAACTACCCATA+TGG | + | chr7.1:87568148-87568167 | MS.gene069352:intron | 45.0% | |
| TGGCTAGGACAAAGAAGGAA+TGG | - | chr7.1:87567733-87567752 | None:intergenic | 45.0% | |
| ! | TGAATCCCTGATGTTGGTCT+TGG | - | chr7.1:87569769-87569788 | None:intergenic | 45.0% |
| !! | AAAATGGTTCTGGTGGAAGG+AGG | + | chr7.1:87569935-87569954 | MS.gene069352:CDS | 45.0% |
| !! | AAGTTGGTGGAAATGACCTC+AGG | + | chr7.1:87567529-87567548 | MS.gene069352:CDS | 45.0% |
| !! | CAACGAGAAAATGGTTCTGG+TGG | + | chr7.1:87569928-87569947 | MS.gene069352:CDS | 45.0% |
| !! | GAGAAAATGGTTCTGGTGGA+AGG | + | chr7.1:87569932-87569951 | MS.gene069352:CDS | 45.0% |
| !! | GGTGGGTTGACTATTTGAGA+GGG | - | chr7.1:87567501-87567520 | None:intergenic | 45.0% |
| !! | TGGTGGGTTGACTATTTGAG+AGG | - | chr7.1:87567502-87567521 | None:intergenic | 45.0% |
| !! | TAAAAAAAATATATATTACT+AGG | - | chr7.1:87568442-87568461 | None:intergenic | 5.0% |
| !!! | ATACATTTTTTTTTTTTTTT+GGG | + | chr7.1:87568872-87568891 | MS.gene069352:intron | 5.0% |
| !!! | TATACATTTTTTTTTTTTTT+TGG | + | chr7.1:87568871-87568890 | MS.gene069352:intron | 5.0% |
| ATAGTCGGGTTACTAGGGCT+TGG | - | chr7.1:87568110-87568129 | None:intergenic | 50.0% | |
| CCACCAACTTGAACTCTTGG+TGG | - | chr7.1:87567519-87567538 | None:intergenic | 50.0% | |
| CCAGAGTGTATAGAGTCCTG+AGG | - | chr7.1:87567548-87567567 | None:intergenic | 50.0% | |
| CCCCGTAGTAGCTGGAATAT+TGG | - | chr7.1:87569066-87569085 | None:intergenic | 50.0% | |
| CCCTAGTAACCCGACTATGA+GGG | + | chr7.1:87568112-87568131 | MS.gene069352:CDS | 50.0% | |
| CCCTCATAGTCGGGTTACTA+GGG | - | chr7.1:87568115-87568134 | None:intergenic | 50.0% | |
| CCTCAGGACTCTATACACTC+TGG | + | chr7.1:87567545-87567564 | MS.gene069352:CDS | 50.0% | |
| TCCCTCATAGTCGGGTTACT+AGG | - | chr7.1:87568116-87568135 | None:intergenic | 50.0% | |
| !! | CATTTCAAGGGTGTTGGAGG+CGG | - | chr7.1:87567897-87567916 | None:intergenic | 50.0% |
| !! | CCACCAAGAGTTCAAGTTGG+TGG | + | chr7.1:87567516-87567535 | MS.gene069352:CDS | 50.0% |
| !! | TTACTAGGGCTTGGTGCATC+AGG | - | chr7.1:87568101-87568120 | None:intergenic | 50.0% |
| AACGTTGTCCCCGTAGTAGC+TGG | - | chr7.1:87569074-87569093 | None:intergenic | 55.0% | |
| GCCCTAGTAACCCGACTATG+AGG | + | chr7.1:87568111-87568130 | MS.gene069352:CDS | 55.0% | |
| GCTACTACGGGGACAACGTT+CGG | + | chr7.1:87569074-87569093 | MS.gene069352:CDS | 55.0% | |
| !! | TGGTTCTGGTGGAAGGAGGA+TGG | + | chr7.1:87569939-87569958 | MS.gene069352:CDS | 55.0% |
| !! | TCAAGGGTGTTGGAGGCGGC+TGG | - | chr7.1:87567893-87567912 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 87567378 | 87569969 | 87567378 | ID=MS.gene069352 |
| chr7.1 | mRNA | 87567378 | 87569969 | 87567378 | ID=MS.gene069352.t1;Parent=MS.gene069352 |
| chr7.1 | exon | 87567378 | 87567566 | 87567378 | ID=MS.gene069352.t1.exon1;Parent=MS.gene069352.t1 |
| chr7.1 | CDS | 87567378 | 87567566 | 87567378 | ID=cds.MS.gene069352.t1;Parent=MS.gene069352.t1 |
| chr7.1 | exon | 87568086 | 87568147 | 87568086 | ID=MS.gene069352.t1.exon2;Parent=MS.gene069352.t1 |
| chr7.1 | CDS | 87568086 | 87568147 | 87568086 | ID=cds.MS.gene069352.t1;Parent=MS.gene069352.t1 |
| chr7.1 | exon | 87569055 | 87569095 | 87569055 | ID=MS.gene069352.t1.exon3;Parent=MS.gene069352.t1 |
| chr7.1 | CDS | 87569055 | 87569095 | 87569055 | ID=cds.MS.gene069352.t1;Parent=MS.gene069352.t1 |
| chr7.1 | exon | 87569740 | 87569969 | 87569740 | ID=MS.gene069352.t1.exon4;Parent=MS.gene069352.t1 |
| chr7.1 | CDS | 87569740 | 87569969 | 87569740 | ID=cds.MS.gene069352.t1;Parent=MS.gene069352.t1 |
| Gene Sequence |
| Protein sequence |
