Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06981.t1 | XP_003630090.2 | 100 | 97 | 0 | 0 | 1 | 97 | 15 | 111 | 9.00E-41 | 176.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06981.t1 | F4K4E3 | 98.7 | 79 | 1 | 0 | 1 | 79 | 15 | 93 | 6.3e-43 | 174.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06981.t1 | G7KRW1 | 100.0 | 97 | 0 | 0 | 1 | 97 | 15 | 111 | 6.5e-41 | 176.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene051172 | MS.gene06981 | PPI |
| MS.gene055162 | MS.gene06981 | PPI |
| MS.gene06981 | MS.gene006962 | PPI |
| MS.gene028322 | MS.gene06981 | PPI |
| MS.gene23567 | MS.gene06981 | PPI |
| MS.gene44813 | MS.gene06981 | PPI |
| MS.gene35136 | MS.gene06981 | PPI |
| MS.gene43700 | MS.gene06981 | PPI |
| MS.gene051241 | MS.gene06981 | PPI |
| MS.gene36469 | MS.gene06981 | PPI |
| MS.gene051245 | MS.gene06981 | PPI |
| MS.gene06981 | MS.gene023131 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06981.t1 | MTR_7g108700 | 100.000 | 136 | 0 | 0 | 1 | 136 | 15 | 150 | 1.87e-95 | 271 |
| MS.gene06981.t1 | MTR_8g091620 | 98.529 | 136 | 2 | 0 | 1 | 136 | 15 | 150 | 8.26e-94 | 267 |
| MS.gene06981.t1 | MTR_8g058537 | 100.000 | 130 | 0 | 0 | 1 | 130 | 15 | 144 | 4.23e-92 | 263 |
| MS.gene06981.t1 | MTR_8g058420 | 100.000 | 130 | 0 | 0 | 1 | 130 | 15 | 144 | 4.23e-92 | 263 |
| MS.gene06981.t1 | MTR_1g088710 | 70.115 | 87 | 8 | 1 | 1 | 87 | 15 | 83 | 2.00e-39 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06981.t1 | AT5G27720 | 74.809 | 131 | 12 | 1 | 1 | 131 | 15 | 124 | 3.28e-49 | 154 |
Find 50 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAGGATGGAGATAGATTT+TGG | 0.280826 | 7.3:-6343200 | MS.gene06981:intron |
| AGGGAGGATGCTGCTGGTGC+TGG | 0.332056 | 7.3:-6342080 | MS.gene06981:CDS |
| TTTCCCCGTATGTAGCATTC+AGG | 0.377935 | 7.3:+6343171 | None:intergenic |
| ACCTGGTGTGGGACGTGGTA+GGG | 0.379220 | 7.3:-6342111 | MS.gene06981:CDS |
| TTAGGTTATTGACAAAGTTC+AGG | 0.395045 | 7.3:-6342662 | MS.gene06981:intron |
| CCTGGTGTGGGACGTGGTAG+GGG | 0.400104 | 7.3:-6342110 | MS.gene06981:CDS |
| TTCCTCCAGGCTTTCCACCT+TGG | 0.401016 | 7.3:+6341979 | None:intergenic |
| GCTAGAGGAGCCGGAGGCCG+AGG | 0.407132 | 7.3:-6342011 | MS.gene06981:CDS |
| GAGGAGCCGGAGGCCGAGGC+AGG | 0.410182 | 7.3:-6342007 | MS.gene06981:CDS |
| GTGGGACGTGGTAGGGGCAG+AGG | 0.412548 | 7.3:-6342104 | MS.gene06981:CDS |
| AGAGACATACAATGGGCATT+TGG | 0.420274 | 7.3:-6343369 | MS.gene06981:CDS |
| AGAGGTAGGGAGGATGCTGC+TGG | 0.431719 | 7.3:-6342086 | MS.gene06981:CDS |
| GCTAGCCCTGCCTCGGCCTC+CGG | 0.431923 | 7.3:+6342001 | None:intergenic |
| GATTTACCTCTGCTTCCTCC+AGG | 0.434977 | 7.3:+6341966 | None:intergenic |
| CACCTTGGCTAGCCCTGCCT+CGG | 0.439949 | 7.3:+6341994 | None:intergenic |
| GACGTGGTAGGGGCAGAGGT+AGG | 0.441032 | 7.3:-6342100 | MS.gene06981:CDS |
| CAGGAAGAAAAGAGCCGTAC+AGG | 0.449085 | 7.3:-6342643 | MS.gene06981:intron |
| GCTAGCCAAGGTGGAAAGCC+TGG | 0.450993 | 7.3:-6341984 | MS.gene06981:CDS |
| CACCTGGTGTGGGACGTGGT+AGG | 0.455282 | 7.3:-6342112 | MS.gene06981:CDS |
| TAGAGGTACAAATAACTTCT+CGG | 0.459260 | 7.3:+6343315 | None:intergenic |
| GTAGGTGCTGGGCGAGGTAG+AGG | 0.459441 | 7.3:-6341419 | MS.gene06981:intron |
| ACGTGGTAGGGGCAGAGGTA+GGG | 0.465345 | 7.3:-6342099 | MS.gene06981:CDS |
| GCTGGTGGACGCCAAACAAA+AGG | 0.478487 | 7.3:-6342062 | MS.gene06981:CDS |
| AAGCCACCTGGTGTGGGACG+TGG | 0.485336 | 7.3:-6342116 | MS.gene06981:CDS |
| CCACCATTACATACCTCATC+AGG | 0.487502 | 7.3:+6343126 | None:intergenic |
| CCCCTACCACGTCCCACACC+AGG | 0.492305 | 7.3:+6342110 | None:intergenic |
| GGACGCCAAACAAAAGGCAC+TGG | 0.511420 | 7.3:-6342056 | MS.gene06981:CDS |
| GAGGATGCTGCTGGTGCTGG+TGG | 0.518067 | 7.3:-6342077 | MS.gene06981:CDS |
| GGATGCCTGAATGCTACATA+CGG | 0.526971 | 7.3:-6343176 | MS.gene06981:CDS |
| CAAACAAAAGGCACTGGGCG+TGG | 0.536007 | 7.3:-6342050 | MS.gene06981:CDS |
| ATTTGGTTAATTGTGATACA+TGG | 0.537665 | 7.3:-6343352 | MS.gene06981:CDS |
| AGATCGCAAGCCACCTGGTG+TGG | 0.544354 | 7.3:-6342123 | MS.gene06981:CDS |
| GATGGTGGTGCTAGAGGAGC+CGG | 0.551923 | 7.3:-6342020 | MS.gene06981:CDS |
| AGGAGCCGGAGGCCGAGGCA+GGG | 0.555849 | 7.3:-6342006 | MS.gene06981:CDS |
| GATCGCAAGCCACCTGGTGT+GGG | 0.560007 | 7.3:-6342122 | MS.gene06981:CDS |
| AATAATACTTCATACCTGTA+CGG | 0.560629 | 7.3:+6342629 | None:intergenic |
| GATGCCTGAATGCTACATAC+GGG | 0.568362 | 7.3:-6343175 | MS.gene06981:CDS |
| TTTGATGATGGTGGTGCTAG+AGG | 0.572144 | 7.3:-6342026 | MS.gene06981:CDS |
| GGCCGAGGCAGGGCTAGCCA+AGG | 0.579681 | 7.3:-6341996 | MS.gene06981:CDS |
| GGAAAGCCTGGAGGAAGCAG+AGG | 0.582079 | 7.3:-6341972 | MS.gene06981:intron |
| TGGTAGGGGCAGAGGTAGGG+AGG | 0.587589 | 7.3:-6342096 | MS.gene06981:CDS |
| AAAATGGAGAGACATACAAT+GGG | 0.598757 | 7.3:-6343376 | MS.gene06981:CDS |
| CGAGGCAGGGCTAGCCAAGG+TGG | 0.621999 | 7.3:-6341993 | MS.gene06981:CDS |
| GACGCCAAACAAAAGGCACT+GGG | 0.628038 | 7.3:-6342055 | MS.gene06981:CDS |
| GGTGGTGCTAGAGGAGCCGG+AGG | 0.630108 | 7.3:-6342017 | MS.gene06981:CDS |
| CTACCACGTCCCACACCAGG+TGG | 0.650448 | 7.3:+6342113 | None:intergenic |
| GTACCTTCGAGTTCCTGATG+AGG | 0.661844 | 7.3:-6343139 | MS.gene06981:intron |
| ATACCTCATCAGGAACTCGA+AGG | 0.675708 | 7.3:+6343136 | None:intergenic |
| AGCCAAGGTGGAAAGCCTGG+AGG | 0.717081 | 7.3:-6341981 | MS.gene06981:CDS |
| ATGCCTGAATGCTACATACG+GGG | 0.720606 | 7.3:-6343174 | MS.gene06981:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTATTTATAAAGATATTA+AGG | - | chr7.3:6341828-6341847 | MS.gene06981:intron | 10.0% |
| !! | ATATATAAAAAAAATACAGA+AGG | - | chr7.3:6343137-6343156 | MS.gene06981:intron | 10.0% |
| !! | GTTATTTATAAAGATATTAA+GGG | - | chr7.3:6341829-6341848 | MS.gene06981:intron | 10.0% |
| !!! | AACTTTATTTTTTATATAAC+TGG | + | chr7.3:6342760-6342779 | None:intergenic | 10.0% |
| !!! | TTTTCTTAAATAACATTAAA+GGG | + | chr7.3:6342033-6342052 | None:intergenic | 10.0% |
| !! | TTAAAACTAATGGTATAAAA+TGG | + | chr7.3:6341915-6341934 | None:intergenic | 15.0% |
| !!! | GTTTTCTTAAATAACATTAA+AGG | + | chr7.3:6342034-6342053 | None:intergenic | 15.0% |
| !!! | TAATTTTTAAAATGATAGCA+TGG | - | chr7.3:6343442-6343461 | MS.gene06981:intron | 15.0% |
| !!! | TTATTTTTTATATAACTGGA+AGG | + | chr7.3:6342756-6342775 | None:intergenic | 15.0% |
| !!! | TTTAATTTGTTATTGTTGAA+AGG | - | chr7.3:6341672-6341691 | MS.gene06981:intron | 15.0% |
| !! | AAAATGCATAAAAGTTATAC+AGG | - | chr7.3:6343414-6343433 | MS.gene06981:intron | 20.0% |
| !! | AAATCTAGTATAACAAGTAA+AGG | + | chr7.3:6343083-6343102 | None:intergenic | 20.0% |
| !! | AAATTATCTGATTCACTAAA+AGG | + | chr7.3:6342183-6342202 | None:intergenic | 20.0% |
| !! | AATTATCTGATTCACTAAAA+GGG | + | chr7.3:6342182-6342201 | None:intergenic | 20.0% |
| !! | AGATTAATATATTGGAATAG+TGG | - | chr7.3:6341959-6341978 | MS.gene06981:intron | 20.0% |
| !! | CACAAAGTAATATAAAGAAA+AGG | + | chr7.3:6341435-6341454 | None:intergenic | 20.0% |
| !! | GTAAGAGTAGATTAATATAT+TGG | - | chr7.3:6341951-6341970 | MS.gene06981:intron | 20.0% |
| !! | TAAAAAGAACATTACTTTAG+AGG | + | chr7.3:6341631-6341650 | None:intergenic | 20.0% |
| !! | TGAAAATAAAAGATAATTCC+AGG | + | chr7.3:6343271-6343290 | None:intergenic | 20.0% |
| !!! | ATACCATTAGTTTTAAGATT+CGG | - | chr7.3:6341919-6341938 | MS.gene06981:intron | 20.0% |
| !!! | TTATGGATTTTGATTGAAAT+TGG | - | chr7.3:6341700-6341719 | MS.gene06981:intron | 20.0% |
| ! | AATAATACTTCATACCTGTA+CGG | + | chr7.3:6342300-6342319 | None:intergenic | 25.0% |
| ! | AGAAAGTTATTCTGCTTAAA+AGG | - | chr7.3:6343319-6343338 | MS.gene06981:CDS | 25.0% |
| ! | ATCAAATTACAGAATTGGTA+AGG | + | chr7.3:6343365-6343384 | None:intergenic | 25.0% |
| ! | ATCTTGATGCATATGTAAAT+TGG | - | chr7.3:6342563-6342582 | MS.gene06981:intron | 25.0% |
| ! | ATTTGGTTAATTGTGATACA+TGG | - | chr7.3:6341574-6341593 | MS.gene06981:intron | 25.0% |
| ! | TATTTCAATCCAAAATCTCA+AGG | + | chr7.3:6342445-6342464 | None:intergenic | 25.0% |
| ! | TGATAAATCCTAAATTGACT+AGG | - | chr7.3:6342369-6342388 | MS.gene06981:intron | 25.0% |
| ! | TGGTGGTTTATAACTTATAA+GGG | - | chr7.3:6342583-6342602 | MS.gene06981:intron | 25.0% |
| ! | TTACCAATTCTGTAATTTGA+TGG | - | chr7.3:6343364-6343383 | MS.gene06981:CDS | 25.0% |
| !! | ATACCTTTTCTTCATTTTGT+AGG | - | chr7.3:6343489-6343508 | MS.gene06981:intron | 25.0% |
| !! | TGAGATTTTGGATTGAAATA+TGG | - | chr7.3:6342445-6342464 | MS.gene06981:intron | 25.0% |
| !! | TTGGTGGTTTATAACTTATA+AGG | - | chr7.3:6342582-6342601 | MS.gene06981:intron | 25.0% |
| !!! | ATTTGTTATTGTTGAAAGGT+TGG | - | chr7.3:6341676-6341695 | MS.gene06981:intron | 25.0% |
| !!! | TGCTTTATTGCTTTTGATTT+AGG | - | chr7.3:6342246-6342265 | MS.gene06981:intron | 25.0% |
| AAAAATGGAGAGACATACAA+TGG | - | chr7.3:6341549-6341568 | MS.gene06981:intron | 30.0% | |
| AAAATGGAGAGACATACAAT+GGG | - | chr7.3:6341550-6341569 | MS.gene06981:intron | 30.0% | |
| AAATGGCATTTCAAATTGTG+TGG | + | chr7.3:6342727-6342746 | None:intergenic | 30.0% | |
| AATCCTAAATTGACTAGGAA+TGG | - | chr7.3:6342374-6342393 | MS.gene06981:intron | 30.0% | |
| ATCCTAAATTGACTAGGAAT+GGG | - | chr7.3:6342375-6342394 | MS.gene06981:intron | 30.0% | |
| CAACCGAATCTTAAAACTAA+TGG | + | chr7.3:6341925-6341944 | None:intergenic | 30.0% | |
| GATAAATTCTCGTTAGATGT+TGG | + | chr7.3:6341886-6341905 | None:intergenic | 30.0% | |
| GGTGGTTTATAACTTATAAG+GGG | - | chr7.3:6342584-6342603 | MS.gene06981:intron | 30.0% | |
| GTGGTTTATAACTTATAAGG+GGG | - | chr7.3:6342585-6342604 | MS.gene06981:intron | 30.0% | |
| TAGTTTATCAAGAGCTAATC+TGG | + | chr7.3:6343300-6343319 | None:intergenic | 30.0% | |
| TTAGGTTATTGACAAAGTTC+AGG | - | chr7.3:6342264-6342283 | MS.gene06981:intron | 30.0% | |
| TTATAACTTATAAGGGGGAA+AGG | - | chr7.3:6342590-6342609 | MS.gene06981:intron | 30.0% | |
| TTGATGCATATGTAAATTGG+TGG | - | chr7.3:6342566-6342585 | MS.gene06981:intron | 30.0% | |
| TTTGTGATCTTATTGGTCAT+GGG | - | chr7.3:6342072-6342091 | MS.gene06981:CDS | 30.0% | |
| ! | ACTACATCTATGTAGTGTTT+TGG | - | chr7.3:6342484-6342503 | MS.gene06981:intron | 30.0% |
| ! | AGGTTACTTTGTGATCTTAT+TGG | - | chr7.3:6342065-6342084 | MS.gene06981:CDS | 30.0% |
| ! | TAGAGGTACAAATAACTTCT+CGG | + | chr7.3:6341614-6341633 | None:intergenic | 30.0% |
| ! | TTCTGATTGATTCTGACTTA+TGG | - | chr7.3:6342657-6342676 | MS.gene06981:CDS | 30.0% |
| ! | TTGAACTTTGTTGTAACAGT+TGG | - | chr7.3:6341518-6341537 | MS.gene06981:intron | 30.0% |
| !! | AGTTTATTGGGTTTGCTATT+AGG | + | chr7.3:6342513-6342532 | None:intergenic | 30.0% |
| !! | ATTGTTGAAAGGTTGGTTTA+TGG | - | chr7.3:6341683-6341702 | MS.gene06981:intron | 30.0% |
| !! | TTGATTGAAATTGGTGATGT+AGG | - | chr7.3:6341709-6341728 | MS.gene06981:intron | 30.0% |
| !!! | CTACATAGATGTAGTTTTAG+AGG | + | chr7.3:6342479-6342498 | None:intergenic | 30.0% |
| AACTCTGACATAGGAATTTG+AGG | + | chr7.3:6343238-6343257 | None:intergenic | 35.0% | |
| AACTCTTTGAACTCTGACAT+AGG | + | chr7.3:6343247-6343266 | None:intergenic | 35.0% | |
| AAGCTGAGTAGGATATAAAG+TGG | - | chr7.3:6342399-6342418 | MS.gene06981:intron | 35.0% | |
| AGTGATGTCTGACTTATACA+TGG | - | chr7.3:6342207-6342226 | MS.gene06981:intron | 35.0% | |
| ATTGAAGAAAACACACACAG+AGG | + | chr7.3:6343014-6343033 | None:intergenic | 35.0% | |
| CCAACAAAGGGAAGTTTATT+GGG | + | chr7.3:6342525-6342544 | None:intergenic | 35.0% | |
| CTTTGTGATCTTATTGGTCA+TGG | - | chr7.3:6342071-6342090 | MS.gene06981:CDS | 35.0% | |
| GAGCCATCAAATTACAGAAT+TGG | + | chr7.3:6343370-6343389 | None:intergenic | 35.0% | |
| GCACCTACAAAATGAAGAAA+AGG | + | chr7.3:6343495-6343514 | None:intergenic | 35.0% | |
| TAAGAAAACCATTAGCGCAT+AGG | - | chr7.3:6342045-6342064 | MS.gene06981:CDS | 35.0% | |
| TATAAGGGGGAAAGGAATAT+TGG | - | chr7.3:6342598-6342617 | MS.gene06981:intron | 35.0% | |
| TATGCATCAAGATAAAGACC+AGG | + | chr7.3:6342556-6342575 | None:intergenic | 35.0% | |
| TATTGGTCATGGGTTTAGTT+GGG | - | chr7.3:6342082-6342101 | MS.gene06981:CDS | 35.0% | |
| TCCAACAAAGGGAAGTTTAT+TGG | + | chr7.3:6342526-6342545 | None:intergenic | 35.0% | |
| TGAGTAGGATATAAAGTGGA+AGG | - | chr7.3:6342403-6342422 | MS.gene06981:intron | 35.0% | |
| TTATTGGTCATGGGTTTAGT+TGG | - | chr7.3:6342081-6342100 | MS.gene06981:CDS | 35.0% | |
| TTCCCATTCCTAGTCAATTT+AGG | + | chr7.3:6342380-6342399 | None:intergenic | 35.0% | |
| ! | AACTTTGTTGTAACAGTTGG+TGG | - | chr7.3:6341521-6341540 | MS.gene06981:intron | 35.0% |
| ! | TGTAGGATGGAGATAGATTT+TGG | - | chr7.3:6341726-6341745 | MS.gene06981:intron | 35.0% |
| ! | TTCTTCATTTTGTAGGTGCT+GGG | - | chr7.3:6343496-6343515 | MS.gene06981:intron | 35.0% |
| ! | TTTCTTCATTTTGTAGGTGC+TGG | - | chr7.3:6343495-6343514 | MS.gene06981:intron | 35.0% |
| !! | TTGAAATTGGTGATGTAGGA+TGG | - | chr7.3:6341713-6341732 | MS.gene06981:intron | 35.0% |
| AAAGTATGAGCACAGCCTTA+AGG | + | chr7.3:6342134-6342153 | None:intergenic | 40.0% | |
| AAATTGTGTGGATCCAACAG+GGG | + | chr7.3:6342715-6342734 | None:intergenic | 40.0% | |
| AGAGACATACAATGGGCATT+TGG | - | chr7.3:6341557-6341576 | MS.gene06981:intron | 40.0% | |
| CAAAGTAACCTATGCGCTAA+TGG | + | chr7.3:6342056-6342075 | None:intergenic | 40.0% | |
| CAAATTGTGTGGATCCAACA+GGG | + | chr7.3:6342716-6342735 | None:intergenic | 40.0% | |
| CCCAATAAACTTCCCTTTGT+TGG | - | chr7.3:6342522-6342541 | MS.gene06981:intron | 40.0% | |
| GTTCCTGATGAGGTATGTAA+TGG | - | chr7.3:6341797-6341816 | MS.gene06981:intron | 40.0% | |
| TAACTGGAAGGCTGCATAAA+TGG | + | chr7.3:6342744-6342763 | None:intergenic | 40.0% | |
| TCAAATTGTGTGGATCCAAC+AGG | + | chr7.3:6342717-6342736 | None:intergenic | 40.0% | |
| TCAGAGTTCAAAGAGTTTCC+TGG | - | chr7.3:6343250-6343269 | MS.gene06981:intron | 40.0% | |
| ! | AACCTGATGCCTTGAGATTT+TGG | - | chr7.3:6342433-6342452 | MS.gene06981:intron | 40.0% |
| ! | AGGATGGAGATAGATTTTGG+CGG | - | chr7.3:6341729-6341748 | MS.gene06981:intron | 40.0% |
| ! | ATCCAAAATCTCAAGGCATC+AGG | + | chr7.3:6342438-6342457 | None:intergenic | 40.0% |
| AAGATGCAAACTTCCCCTGT+TGG | - | chr7.3:6342699-6342718 | MS.gene06981:intron | 45.0% | |
| ATACCTCATCAGGAACTCGA+AGG | + | chr7.3:6341793-6341812 | None:intergenic | 45.0% | |
| ATGCCTGAATGCTACATACG+GGG | - | chr7.3:6341752-6341771 | MS.gene06981:intron | 45.0% | |
| CAGGTGCTAGATCCAACAAA+GGG | + | chr7.3:6342537-6342556 | None:intergenic | 45.0% | |
| CATGTGCTATCAGCGTAGAT+AGG | - | chr7.3:6341853-6341872 | MS.gene06981:intron | 45.0% | |
| CCACCATTACATACCTCATC+AGG | + | chr7.3:6341803-6341822 | None:intergenic | 45.0% | |
| CCTGATGAGGTATGTAATGG+TGG | - | chr7.3:6341800-6341819 | MS.gene06981:intron | 45.0% | |
| GAAGAAAACACACACAGAGG+TGG | + | chr7.3:6343011-6343030 | None:intergenic | 45.0% | |
| GATGCCTGAATGCTACATAC+GGG | - | chr7.3:6341751-6341770 | MS.gene06981:intron | 45.0% | |
| GGATGCCTGAATGCTACATA+CGG | - | chr7.3:6341750-6341769 | MS.gene06981:intron | 45.0% | |
| TAGGAATGGGAAAGCTGAGT+AGG | - | chr7.3:6342388-6342407 | MS.gene06981:intron | 45.0% | |
| TTTCCCCGTATGTAGCATTC+AGG | + | chr7.3:6341758-6341777 | None:intergenic | 45.0% | |
| ! | GCTGTGCTCATACTTTTGTC+CGG | - | chr7.3:6342138-6342157 | MS.gene06981:intron | 45.0% |
| !! | CAGTTGGTGGAGCTGAAAAA+TGG | - | chr7.3:6341534-6341553 | MS.gene06981:intron | 45.0% |
| !! | TTTGATGATGGTGGTGCTAG+AGG | - | chr7.3:6342900-6342919 | MS.gene06981:intron | 45.0% |
| CAGGAAGAAAAGAGCCGTAC+AGG | - | chr7.3:6342283-6342302 | MS.gene06981:intron | 50.0% | |
| CCAGGTGCTAGATCCAACAA+AGG | + | chr7.3:6342538-6342557 | None:intergenic | 50.0% | |
| CCTTTGTTGGATCTAGCACC+TGG | - | chr7.3:6342535-6342554 | MS.gene06981:intron | 50.0% | |
| GATTTACCTCTGCTTCCTCC+AGG | + | chr7.3:6342963-6342982 | None:intergenic | 50.0% | |
| GGGAAAAACCTTGTGCTCGA+GGG | - | chr7.3:6342102-6342121 | MS.gene06981:CDS | 50.0% | |
| GTAGCTCAATGCAGAAGCTC+CGG | + | chr7.3:6342160-6342179 | None:intergenic | 50.0% | |
| TGGGAAAAACCTTGTGCTCG+AGG | - | chr7.3:6342101-6342120 | MS.gene06981:CDS | 50.0% | |
| ! | AGGTGGCTTGCGATCTGAAA+AGG | + | chr7.3:6342799-6342818 | None:intergenic | 50.0% |
| ! | GGTGGCTTGCGATCTGAAAA+GGG | + | chr7.3:6342798-6342817 | None:intergenic | 50.0% |
| ! | GTACCTTCGAGTTCCTGATG+AGG | - | chr7.3:6341787-6341806 | MS.gene06981:intron | 50.0% |
| ! | TCTCAAGGCATCAGGTTCAC+AGG | + | chr7.3:6342430-6342449 | None:intergenic | 50.0% |
| ! | TTTTCAGATCGCAAGCCACC+TGG | - | chr7.3:6342798-6342817 | MS.gene06981:intron | 50.0% |
| !! | GACGCCAAACAAAAGGCACT+GGG | - | chr7.3:6342871-6342890 | MS.gene06981:intron | 50.0% |
| !!! | ACTGGGCGTGGTTTTGATGA+TGG | - | chr7.3:6342888-6342907 | MS.gene06981:intron | 50.0% |
| GCTCGAGGGTTTACGCCTTA+AGG | - | chr7.3:6342116-6342135 | MS.gene06981:CDS | 55.0% | |
| TTCCTCCAGGCTTTCCACCT+TGG | + | chr7.3:6342950-6342969 | None:intergenic | 55.0% | |
| ! | CACGCCCAGTGCCTTTTGTT+TGG | + | chr7.3:6342878-6342897 | None:intergenic | 55.0% |
| ! | GCTGGTGGACGCCAAACAAA+AGG | - | chr7.3:6342864-6342883 | MS.gene06981:intron | 55.0% |
| ! | GGACGCCAAACAAAAGGCAC+TGG | - | chr7.3:6342870-6342889 | MS.gene06981:intron | 55.0% |
| !! | CAAACAAAAGGCACTGGGCG+TGG | - | chr7.3:6342876-6342895 | MS.gene06981:intron | 55.0% |
| !!! | CATTTTGTAGGTGCTGGGCG+AGG | - | chr7.3:6343501-6343520 | MS.gene06981:intron | 55.0% |
| !!! | GGGCGTGGTTTTGATGATGG+TGG | - | chr7.3:6342891-6342910 | MS.gene06981:intron | 55.0% |
| ACCTGGTGTGGGACGTGGTA+GGG | - | chr7.3:6342815-6342834 | MS.gene06981:intron | 60.0% | |
| ACGTGGTAGGGGCAGAGGTA+GGG | - | chr7.3:6342827-6342846 | MS.gene06981:intron | 60.0% | |
| AGAGGTAGGGAGGATGCTGC+TGG | - | chr7.3:6342840-6342859 | MS.gene06981:intron | 60.0% | |
| AGATCGCAAGCCACCTGGTG+TGG | - | chr7.3:6342803-6342822 | MS.gene06981:intron | 60.0% | |
| AGCCAAGGTGGAAAGCCTGG+AGG | - | chr7.3:6342945-6342964 | MS.gene06981:intron | 60.0% | |
| GATCGCAAGCCACCTGGTGT+GGG | - | chr7.3:6342804-6342823 | MS.gene06981:intron | 60.0% | |
| GCTAGCCAAGGTGGAAAGCC+TGG | - | chr7.3:6342942-6342961 | MS.gene06981:intron | 60.0% | |
| GGAAAGCCTGGAGGAAGCAG+AGG | - | chr7.3:6342954-6342973 | MS.gene06981:intron | 60.0% | |
| GGCGTAAACCCTCGAGCACA+AGG | + | chr7.3:6342113-6342132 | None:intergenic | 60.0% | |
| ! | GATGGTGGTGCTAGAGGAGC+CGG | - | chr7.3:6342906-6342925 | MS.gene06981:intron | 60.0% |
| AAGCCACCTGGTGTGGGACG+TGG | - | chr7.3:6342810-6342829 | MS.gene06981:intron | 65.0% | |
| AGGGAGGATGCTGCTGGTGC+TGG | - | chr7.3:6342846-6342865 | MS.gene06981:intron | 65.0% | |
| CACCTGGTGTGGGACGTGGT+AGG | - | chr7.3:6342814-6342833 | MS.gene06981:intron | 65.0% | |
| CCTGGTGTGGGACGTGGTAG+GGG | - | chr7.3:6342816-6342835 | MS.gene06981:intron | 65.0% | |
| CTACCACGTCCCACACCAGG+TGG | + | chr7.3:6342816-6342835 | None:intergenic | 65.0% | |
| GACGTGGTAGGGGCAGAGGT+AGG | - | chr7.3:6342826-6342845 | MS.gene06981:intron | 65.0% | |
| TGGTAGGGGCAGAGGTAGGG+AGG | - | chr7.3:6342830-6342849 | MS.gene06981:intron | 65.0% | |
| ! | CACCTTGGCTAGCCCTGCCT+CGG | + | chr7.3:6342935-6342954 | None:intergenic | 65.0% |
| ! | GAGGATGCTGCTGGTGCTGG+TGG | - | chr7.3:6342849-6342868 | MS.gene06981:intron | 65.0% |
| !! | GTAGGTGCTGGGCGAGGTAG+AGG | - | chr7.3:6343507-6343526 | MS.gene06981:intron | 65.0% |
| CCCCTACCACGTCCCACACC+AGG | + | chr7.3:6342819-6342838 | None:intergenic | 70.0% | |
| GTGGGACGTGGTAGGGGCAG+AGG | - | chr7.3:6342822-6342841 | MS.gene06981:intron | 70.0% | |
| ! | GGTGGTGCTAGAGGAGCCGG+AGG | - | chr7.3:6342909-6342928 | MS.gene06981:intron | 70.0% |
| !! | CGAGGCAGGGCTAGCCAAGG+TGG | - | chr7.3:6342933-6342952 | MS.gene06981:intron | 70.0% |
| AGGAGCCGGAGGCCGAGGCA+GGG | - | chr7.3:6342920-6342939 | MS.gene06981:intron | 75.0% | |
| GCTAGAGGAGCCGGAGGCCG+AGG | - | chr7.3:6342915-6342934 | MS.gene06981:intron | 75.0% | |
| GCTAGCCCTGCCTCGGCCTC+CGG | + | chr7.3:6342928-6342947 | None:intergenic | 75.0% | |
| !! | GGCCGAGGCAGGGCTAGCCA+AGG | - | chr7.3:6342930-6342949 | MS.gene06981:intron | 75.0% |
| ! | GAGGAGCCGGAGGCCGAGGC+AGG | - | chr7.3:6342919-6342938 | MS.gene06981:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 6341415 | 6343533 | 6341415 | ID=MS.gene06981 |
| chr7.3 | mRNA | 6341415 | 6343533 | 6341415 | ID=MS.gene06981.t1;Parent=MS.gene06981 |
| chr7.3 | exon | 6343531 | 6343533 | 6343531 | ID=MS.gene06981.t1.exon1;Parent=MS.gene06981.t1 |
| chr7.3 | CDS | 6343531 | 6343533 | 6343531 | ID=cds.MS.gene06981.t1;Parent=MS.gene06981.t1 |
| chr7.3 | exon | 6343313 | 6343411 | 6343313 | ID=MS.gene06981.t1.exon2;Parent=MS.gene06981.t1 |
| chr7.3 | CDS | 6343313 | 6343411 | 6343313 | ID=cds.MS.gene06981.t1;Parent=MS.gene06981.t1 |
| chr7.3 | exon | 6343140 | 6343217 | 6343140 | ID=MS.gene06981.t1.exon3;Parent=MS.gene06981.t1 |
| chr7.3 | CDS | 6343140 | 6343217 | 6343140 | ID=cds.MS.gene06981.t1;Parent=MS.gene06981.t1 |
| chr7.3 | exon | 6342644 | 6342680 | 6342644 | ID=MS.gene06981.t1.exon4;Parent=MS.gene06981.t1 |
| chr7.3 | CDS | 6342644 | 6342680 | 6342644 | ID=cds.MS.gene06981.t1;Parent=MS.gene06981.t1 |
| chr7.3 | exon | 6341973 | 6342143 | 6341973 | ID=MS.gene06981.t1.exon5;Parent=MS.gene06981.t1 |
| chr7.3 | CDS | 6341973 | 6342143 | 6341973 | ID=cds.MS.gene06981.t1;Parent=MS.gene06981.t1 |
| chr7.3 | exon | 6341415 | 6341437 | 6341415 | ID=MS.gene06981.t1.exon6;Parent=MS.gene06981.t1 |
| chr7.3 | CDS | 6341415 | 6341437 | 6341415 | ID=cds.MS.gene06981.t1;Parent=MS.gene06981.t1 |
| Gene Sequence |
| Protein sequence |
