Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006962.t1 | XP_013456843.1 | 100 | 99 | 0 | 0 | 1 | 99 | 1 | 99 | 3.60E-47 | 197.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006962.t1 | Q8VYI0 | 89.2 | 93 | 10 | 0 | 7 | 99 | 6 | 98 | 1.5e-41 | 169.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006962.t1 | A0A072UM99 | 100.0 | 99 | 0 | 0 | 1 | 99 | 1 | 99 | 2.6e-47 | 197.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36469 | MS.gene006962 | PPI |
| MS.gene57218 | MS.gene006962 | PPI |
| MS.gene32451 | MS.gene006962 | PPI |
| MS.gene006962 | MS.gene07102 | PPI |
| MS.gene06981 | MS.gene006962 | PPI |
| MS.gene35136 | MS.gene006962 | PPI |
| MS.gene31704 | MS.gene006962 | PPI |
| MS.gene051245 | MS.gene006962 | PPI |
| MS.gene068867 | MS.gene006962 | PPI |
| MS.gene051172 | MS.gene006962 | PPI |
| MS.gene055162 | MS.gene006962 | PPI |
| MS.gene52741 | MS.gene006962 | PPI |
| MS.gene22977 | MS.gene006962 | PPI |
| MS.gene070248 | MS.gene006962 | PPI |
| MS.gene035725 | MS.gene006962 | PPI |
| MS.gene70342 | MS.gene006962 | PPI |
| MS.gene028322 | MS.gene006962 | PPI |
| MS.gene030751 | MS.gene006962 | PPI |
| MS.gene23567 | MS.gene006962 | PPI |
| MS.gene050311 | MS.gene006962 | PPI |
| MS.gene24542 | MS.gene006962 | PPI |
| MS.gene32974 | MS.gene006962 | PPI |
| MS.gene012386 | MS.gene006962 | PPI |
| MS.gene006962 | MS.gene023131 | PPI |
| MS.gene28122 | MS.gene006962 | PPI |
| MS.gene44813 | MS.gene006962 | PPI |
| MS.gene24734 | MS.gene006962 | PPI |
| MS.gene051630 | MS.gene006962 | PPI |
| MS.gene006962 | MS.gene021399 | PPI |
| MS.gene43700 | MS.gene006962 | PPI |
| MS.gene051241 | MS.gene006962 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006962.t1 | MTR_4g084910 | 100.000 | 99 | 0 | 0 | 1 | 99 | 1 | 99 | 5.25e-67 | 196 |
| MS.gene006962.t1 | MTR_1g085050 | 65.823 | 79 | 16 | 1 | 21 | 99 | 24 | 91 | 1.08e-28 | 99.4 |
| MS.gene006962.t1 | MTR_2g042700 | 40.000 | 70 | 41 | 1 | 8 | 77 | 15 | 83 | 2.78e-13 | 60.8 |
| MS.gene006962.t1 | MTR_2g042700 | 40.000 | 70 | 41 | 1 | 8 | 77 | 15 | 83 | 4.88e-13 | 60.5 |
| MS.gene006962.t1 | MTR_8g021250 | 38.356 | 73 | 44 | 1 | 7 | 79 | 14 | 85 | 7.34e-13 | 60.1 |
| MS.gene006962.t1 | MTR_8g021250 | 38.356 | 73 | 44 | 1 | 7 | 79 | 14 | 85 | 1.95e-12 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006962.t1 | AT1G65700 | 89.247 | 93 | 10 | 0 | 7 | 99 | 6 | 98 | 2.41e-56 | 169 |
| MS.gene006962.t1 | AT1G65700 | 89.247 | 93 | 10 | 0 | 7 | 99 | 6 | 98 | 2.41e-56 | 169 |
| MS.gene006962.t1 | AT1G65700 | 61.029 | 136 | 10 | 1 | 7 | 99 | 6 | 141 | 6.34e-48 | 149 |
| MS.gene006962.t1 | AT1G19120 | 42.466 | 73 | 41 | 1 | 7 | 79 | 14 | 85 | 7.09e-15 | 65.5 |
| MS.gene006962.t1 | AT3G14080 | 39.535 | 86 | 44 | 2 | 1 | 79 | 1 | 85 | 2.27e-14 | 63.9 |
| MS.gene006962.t1 | AT3G14080 | 39.535 | 86 | 44 | 2 | 1 | 79 | 1 | 85 | 2.27e-14 | 63.9 |
| MS.gene006962.t1 | AT3G14080 | 35.354 | 99 | 55 | 3 | 1 | 92 | 1 | 97 | 3.42e-13 | 60.5 |
| MS.gene006962.t1 | AT3G14080 | 43.077 | 65 | 36 | 1 | 15 | 79 | 12 | 75 | 1.20e-11 | 57.0 |
Find 21 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGAATGACAGGCTTTA+AGG | 0.150814 | 4.4:+27308166 | None:intergenic |
| AGGTGTTCAGCAGCTTGTTC+TGG | 0.186508 | 4.4:-27308394 | MS.gene006962:CDS |
| TTCTGGGTTTATACATCATT+AGG | 0.243615 | 4.4:-27308377 | MS.gene006962:CDS |
| TCTGGGTTTATACATCATTA+GGG | 0.307405 | 4.4:-27308376 | MS.gene006962:CDS |
| GCATTTCAGGGAGTTCTAAA+AGG | 0.353831 | 4.4:-27310133 | MS.gene006962:intron |
| CAGAAGCGTTGTTGGTGAAT+TGG | 0.357723 | 4.4:-27308237 | MS.gene006962:CDS |
| CAATGAATGACAGGCTTTAA+GGG | 0.358958 | 4.4:+27308167 | None:intergenic |
| GGTGTTCAGCAGCTTGTTCT+GGG | 0.375557 | 4.4:-27308393 | MS.gene006962:CDS |
| ATTTCGGTCATTACAAATGA+TGG | 0.380724 | 4.4:-27310274 | MS.gene006962:CDS |
| ATTATGGCAACCGGTGGCCC+TGG | 0.444370 | 4.4:-27310792 | MS.gene006962:CDS |
| CAAGAATTATATTTGTTGCC+TGG | 0.448914 | 4.4:+27310104 | None:intergenic |
| TCTACAAGAGACTCGAGTCC+AGG | 0.458608 | 4.4:+27310774 | None:intergenic |
| TTAAGGGATGAGCTCTCAGC+TGG | 0.465465 | 4.4:+27308183 | None:intergenic |
| CTCTCAGCTGGGACAAGTCT+AGG | 0.489357 | 4.4:+27308195 | None:intergenic |
| GAGATTATCATTATGGCAAC+CGG | 0.497445 | 4.4:-27310801 | None:intergenic |
| AGACTCGAGTCCAGGGCCAC+CGG | 0.560595 | 4.4:+27310782 | None:intergenic |
| AAATGATGGACGAAACATAG+TGG | 0.577234 | 4.4:-27310260 | MS.gene006962:intron |
| CTACAAGAGACTCGAGTCCA+GGG | 0.597242 | 4.4:+27310775 | None:intergenic |
| CTGGGTTTATACATCATTAG+GGG | 0.623461 | 4.4:-27308375 | MS.gene006962:CDS |
| TAAGGGATGAGCTCTCAGCT+GGG | 0.642033 | 4.4:+27308184 | None:intergenic |
| ATTATCATTATGGCAACCGG+TGG | 0.674106 | 4.4:-27310798 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAAAAATTAGAATATT+AGG | + | chr4.4:27308244-27308263 | None:intergenic | 10.0% |
| !!! | TAAAGTTTTTATTGTTTTTT+TGG | - | chr4.4:27308641-27308660 | MS.gene006962:intron | 10.0% |
| !! | AATTAGTGAATTTGAATATA+TGG | - | chr4.4:27310252-27310271 | MS.gene006962:intron | 15.0% |
| !! | ATCTGAAAACATAATTATAT+TGG | - | chr4.4:27309416-27309435 | MS.gene006962:intron | 15.0% |
| !! | ATTAGTGAATTTGAATATAT+GGG | - | chr4.4:27310253-27310272 | MS.gene006962:intron | 15.0% |
| !! | TAAAAAATATTCAAAGTGAA+GGG | + | chr4.4:27310452-27310471 | None:intergenic | 15.0% |
| !! | TTAAAAAATATTCAAAGTGA+AGG | + | chr4.4:27310453-27310472 | None:intergenic | 15.0% |
| !!! | TAGAATTTTGATATTGAATA+CGG | - | chr4.4:27308962-27308981 | MS.gene006962:intron | 15.0% |
| !!! | TATTTGTCTTTTTACTAATT+AGG | - | chr4.4:27310134-27310153 | MS.gene006962:intron | 15.0% |
| !!! | TTATATTTTAATTTCTATGG+TGG | - | chr4.4:27308266-27308285 | MS.gene006962:intron | 15.0% |
| !! | AAATAAGAAACGTAGAAATA+AGG | + | chr4.4:27309614-27309633 | None:intergenic | 20.0% |
| !! | AAGTATTAATTAACCTGTTA+TGG | - | chr4.4:27308336-27308355 | MS.gene006962:intron | 20.0% |
| !! | AATAAGAAACGTAGAAATAA+GGG | + | chr4.4:27309613-27309632 | None:intergenic | 20.0% |
| !! | CAAAAATAATTGAAATGTTC+GGG | - | chr4.4:27308410-27308429 | MS.gene006962:intron | 20.0% |
| !! | GATTGTTAAATAACTTGAAT+TGG | - | chr4.4:27310350-27310369 | MS.gene006962:intron | 20.0% |
| !! | GCAAAAATAATTGAAATGTT+CGG | - | chr4.4:27308409-27308428 | MS.gene006962:intron | 20.0% |
| !! | TAAAATAGGGTTAAACTAAA+AGG | - | chr4.4:27308384-27308403 | MS.gene006962:CDS | 20.0% |
| !! | TAGATTAATCCAAAAAAGTT+AGG | - | chr4.4:27310000-27310019 | MS.gene006962:intron | 20.0% |
| !!! | AAAGCATATTCAATTTTACA+TGG | - | chr4.4:27309760-27309779 | MS.gene006962:intron | 20.0% |
| !!! | ATAATTATGTTTTCAGATCT+GGG | + | chr4.4:27309414-27309433 | None:intergenic | 20.0% |
| !!! | TATAATTATGTTTTCAGATC+TGG | + | chr4.4:27309415-27309434 | None:intergenic | 20.0% |
| ! | AAAAGCAGTATTTGAGTATA+CGG | - | chr4.4:27309471-27309490 | MS.gene006962:intron | 25.0% |
| ! | AACAGATGTTGAATTATTTG+TGG | + | chr4.4:27309442-27309461 | None:intergenic | 25.0% |
| ! | ACTATTAAACCAACATATGA+TGG | + | chr4.4:27310680-27310699 | None:intergenic | 25.0% |
| ! | ATAAGAAACGTAGAAATAAG+GGG | + | chr4.4:27309612-27309631 | None:intergenic | 25.0% |
| ! | ATGATGTCCATCATATTTAA+CGG | + | chr4.4:27309922-27309941 | None:intergenic | 25.0% |
| ! | ATTAATTAACCTGTTATGGT+AGG | - | chr4.4:27308340-27308359 | MS.gene006962:intron | 25.0% |
| ! | ATTAGGGATTTGATCTTAAA+GGG | - | chr4.4:27308296-27308315 | MS.gene006962:intron | 25.0% |
| ! | CTATTAAACCAACATATGAT+GGG | + | chr4.4:27310679-27310698 | None:intergenic | 25.0% |
| ! | GAATACTTGTGATGATATTT+AGG | - | chr4.4:27309713-27309732 | MS.gene006962:intron | 25.0% |
| ! | GTCAAAAGAACAATTATTGT+AGG | + | chr4.4:27309185-27309204 | None:intergenic | 25.0% |
| ! | GTGCAAAAAAATTCAATATC+AGG | + | chr4.4:27309130-27309149 | None:intergenic | 25.0% |
| ! | TATTAGGGATTTGATCTTAA+AGG | - | chr4.4:27308295-27308314 | MS.gene006962:intron | 25.0% |
| ! | TCATTCTCAATTCTAATTAC+AGG | - | chr4.4:27310537-27310556 | MS.gene006962:intron | 25.0% |
| ! | TGGAATAAAGTACAAGATAT+AGG | + | chr4.4:27310629-27310648 | None:intergenic | 25.0% |
| ! | TTATGGTAGGTTTATCTTTA+GGG | - | chr4.4:27308353-27308372 | MS.gene006962:intron | 25.0% |
| ! | TTTATACCATTGGATGATAA+AGG | - | chr4.4:27309261-27309280 | MS.gene006962:intron | 25.0% |
| !! | AAACACATATAGCTTGTATT+TGG | + | chr4.4:27309158-27309177 | None:intergenic | 25.0% |
| !! | ATTTGAAATCAAATGGAAAG+TGG | - | chr4.4:27309787-27309806 | MS.gene006962:intron | 25.0% |
| !! | TAGTGTTGAAATCAGATTTA+CGG | + | chr4.4:27309537-27309556 | None:intergenic | 25.0% |
| !! | TCTTGTACTTTATTCCATTT+TGG | - | chr4.4:27310632-27310651 | MS.gene006962:intron | 25.0% |
| !! | TCTTTTTACTAATTAGGATC+AGG | - | chr4.4:27310140-27310159 | MS.gene006962:intron | 25.0% |
| !! | TGGTTGAATTTGAAATCAAA+TGG | - | chr4.4:27309780-27309799 | MS.gene006962:intron | 25.0% |
| !! | TTCTTTTGACATGACAAAAT+TGG | - | chr4.4:27309195-27309214 | MS.gene006962:intron | 25.0% |
| !!! | CTAGGCTCTTTTAAAATATA+GGG | - | chr4.4:27308492-27308511 | MS.gene006962:intron | 25.0% |
| !!! | TTTACACCAAAGTTTTTTCT+GGG | + | chr4.4:27309869-27309888 | None:intergenic | 25.0% |
| !!! | TTTAGGTCTTTAATTTGAGA+CGG | + | chr4.4:27309589-27309608 | None:intergenic | 25.0% |
| !!! | TTTTTTTCAAGAGACATGAT+AGG | - | chr4.4:27309632-27309651 | MS.gene006962:intron | 25.0% |
| AAAATATTCAAAGTGAAGGG+AGG | + | chr4.4:27310449-27310468 | None:intergenic | 30.0% | |
| AAAGATAAACCTACCATAAC+AGG | + | chr4.4:27308352-27308371 | None:intergenic | 30.0% | |
| AAATATTCAAAGTGAAGGGA+GGG | + | chr4.4:27310448-27310467 | None:intergenic | 30.0% | |
| ACTAATTACTACAAAAGTCC+AGG | + | chr4.4:27310239-27310258 | None:intergenic | 30.0% | |
| ATTTCGGTCATTACAAATGA+TGG | - | chr4.4:27308681-27308700 | MS.gene006962:intron | 30.0% | |
| CTGGCTGTATAAACAATAAA+AGG | + | chr4.4:27310191-27310210 | None:intergenic | 30.0% | |
| GATTAATCTAACATGCACAA+TGG | + | chr4.4:27309990-27310009 | None:intergenic | 30.0% | |
| GGTTTAATAGTGTTTCCATT+TGG | - | chr4.4:27310689-27310708 | MS.gene006962:intron | 30.0% | |
| GTATGTACCGTTAAATATGA+TGG | - | chr4.4:27309912-27309931 | MS.gene006962:intron | 30.0% | |
| GTGACGATAAATATCCAAAA+TGG | + | chr4.4:27310649-27310668 | None:intergenic | 30.0% | |
| GTTATGGTAGGTTTATCTTT+AGG | - | chr4.4:27308352-27308371 | MS.gene006962:intron | 30.0% | |
| GTTATTCTGTTTGCATTTCA+GGG | - | chr4.4:27308810-27308829 | MS.gene006962:intron | 30.0% | |
| TAGGGGACTAAACTAAAATA+GGG | - | chr4.4:27308371-27308390 | MS.gene006962:CDS | 30.0% | |
| TATGGTAGGTTTATCTTTAG+GGG | - | chr4.4:27308354-27308373 | MS.gene006962:intron | 30.0% | |
| TCTCAATTCTAATTACAGGA+AGG | - | chr4.4:27310541-27310560 | MS.gene006962:intron | 30.0% | |
| TCTGGGTTTATACATCATTA+GGG | - | chr4.4:27310579-27310598 | MS.gene006962:intron | 30.0% | |
| TGTTATTCTGTTTGCATTTC+AGG | - | chr4.4:27308809-27308828 | MS.gene006962:intron | 30.0% | |
| TTAGGGGACTAAACTAAAAT+AGG | - | chr4.4:27308370-27308389 | MS.gene006962:CDS | 30.0% | |
| TTCTGGGTTTATACATCATT+AGG | - | chr4.4:27310578-27310597 | MS.gene006962:intron | 30.0% | |
| ! | ATGAAATTAGCTTGACAGTA+CGG | - | chr4.4:27308736-27308755 | MS.gene006962:intron | 30.0% |
| ! | CAAGAATTATATTTGTTGCC+TGG | + | chr4.4:27308854-27308873 | None:intergenic | 30.0% |
| ! | GCATGTTTGAATTTGATGAT+GGG | - | chr4.4:27310022-27310041 | MS.gene006962:intron | 30.0% |
| ! | TTCTTTGAGGAATGATTTGT+TGG | - | chr4.4:27308936-27308955 | MS.gene006962:intron | 30.0% |
| !! | AATCTAATTGACTTGTGCAT+TGG | + | chr4.4:27309229-27309248 | None:intergenic | 30.0% |
| !! | GAATGTGTTTAAGTTGTACA+AGG | - | chr4.4:27309012-27309031 | MS.gene006962:intron | 30.0% |
| !!! | CTTTACACCAAAGTTTTTTC+TGG | + | chr4.4:27309870-27309889 | None:intergenic | 30.0% |
| !!! | GCTAGGCTCTTTTAAAATAT+AGG | - | chr4.4:27308491-27308510 | MS.gene006962:intron | 30.0% |
| !!! | TCAAACATGCCTAACTTTTT+TGG | + | chr4.4:27310012-27310031 | None:intergenic | 30.0% |
| AAAAACTTCTTGATCTGCCA+AGG | - | chr4.4:27309835-27309854 | MS.gene006962:intron | 35.0% | |
| AACAAGTACTCATTTACCAC+TGG | + | chr4.4:27309949-27309968 | None:intergenic | 35.0% | |
| AACGTAGAAATAAGGGGTTT+AGG | + | chr4.4:27309606-27309625 | None:intergenic | 35.0% | |
| AATATTCAAAGTGAAGGGAG+GGG | + | chr4.4:27310447-27310466 | None:intergenic | 35.0% | |
| AATTGAGAATGAGTGACATG+AGG | + | chr4.4:27310529-27310548 | None:intergenic | 35.0% | |
| ACTATGCCTTTATCATCCAA+TGG | + | chr4.4:27309270-27309289 | None:intergenic | 35.0% | |
| AGTATTTGAGTATACGGAGA+GGG | - | chr4.4:27309477-27309496 | MS.gene006962:intron | 35.0% | |
| AGTGGTATTCGTTTGTTTGA+TGG | - | chr4.4:27309805-27309824 | MS.gene006962:intron | 35.0% | |
| CAACACTATGTGATTACTCT+TGG | - | chr4.4:27309549-27309568 | MS.gene006962:intron | 35.0% | |
| CAACCACATGAATTTGTAAC+CGG | + | chr4.4:27310398-27310417 | None:intergenic | 35.0% | |
| CAAGTCAATTAGATTGTGCA+CGG | - | chr4.4:27309234-27309253 | MS.gene006962:intron | 35.0% | |
| CACTCGCTTAAATTTCTTTG+AGG | - | chr4.4:27308923-27308942 | MS.gene006962:intron | 35.0% | |
| CTGGGTTTATACATCATTAG+GGG | - | chr4.4:27310580-27310599 | MS.gene006962:intron | 35.0% | |
| GAGATAGAGATAAACGCATA+CGG | - | chr4.4:27309042-27309061 | MS.gene006962:intron | 35.0% | |
| GGCATGTTTGAATTTGATGA+TGG | - | chr4.4:27310021-27310040 | MS.gene006962:intron | 35.0% | |
| GGTAGAAAAAACACGTTCAT+GGG | + | chr4.4:27308883-27308902 | None:intergenic | 35.0% | |
| GTTTGCTTTCGAAACTTTGA+AGG | - | chr4.4:27308545-27308564 | MS.gene006962:intron | 35.0% | |
| TCAATGAATGACAGGCTTTA+AGG | + | chr4.4:27310792-27310811 | None:intergenic | 35.0% | |
| TGGTAGAAAAAACACGTTCA+TGG | + | chr4.4:27308884-27308903 | None:intergenic | 35.0% | |
| TTGTTCACATGAAAGACCTA+TGG | - | chr4.4:27309964-27309983 | MS.gene006962:intron | 35.0% | |
| TTTCTGCATTTGACAAATGC+CGG | - | chr4.4:27310376-27310395 | MS.gene006962:intron | 35.0% | |
| ! | ACGCTTCTGAAAAATCCAAA+TGG | + | chr4.4:27310707-27310726 | None:intergenic | 35.0% |
| ! | CAATGAATGACAGGCTTTAA+GGG | + | chr4.4:27310791-27310810 | None:intergenic | 35.0% |
| ! | CTATGGTGGAGCTAATATTA+GGG | - | chr4.4:27308280-27308299 | MS.gene006962:intron | 35.0% |
| ! | TATGCTATGAGAGGCAATTT+TGG | - | chr4.4:27308617-27308636 | MS.gene006962:intron | 35.0% |
| ! | TCTATGGTGGAGCTAATATT+AGG | - | chr4.4:27308279-27308298 | MS.gene006962:intron | 35.0% |
| ! | TGTTTTCGCAGAGCAAATTT+CGG | - | chr4.4:27308665-27308684 | MS.gene006962:intron | 35.0% |
| !! | AAATGATGGACGAAACATAG+TGG | - | chr4.4:27308695-27308714 | MS.gene006962:intron | 35.0% |
| !! | TTGAATTTGATGATGGGATG+AGG | - | chr4.4:27310028-27310047 | MS.gene006962:intron | 35.0% |
| !!! | AGTTCTAAAAGGTTTTGACC+AGG | - | chr4.4:27308833-27308852 | MS.gene006962:intron | 35.0% |
| !!! | ATGAACGTGTTTTTTCTACC+AGG | - | chr4.4:27308883-27308902 | MS.gene006962:intron | 35.0% |
| !!! | TGAACGTGTTTTTTCTACCA+GGG | - | chr4.4:27308884-27308903 | MS.gene006962:intron | 35.0% |
| AAGTCCAGGAAAAAAGTCCA+TGG | + | chr4.4:27310225-27310244 | None:intergenic | 40.0% | |
| ACCAGATGCTATAGAAGCAA+AGG | + | chr4.4:27309352-27309371 | None:intergenic | 40.0% | |
| ACCTTTGCTTCTATAGCATC+TGG | - | chr4.4:27309348-27309367 | MS.gene006962:intron | 40.0% | |
| AGAAAAAGATCCAGTGAGGT+AGG | + | chr4.4:27309307-27309326 | None:intergenic | 40.0% | |
| AGGCTACCCAGAAAAAACTT+TGG | - | chr4.4:27309860-27309879 | MS.gene006962:intron | 40.0% | |
| ATAATTGAAATGTTCGGGCG+CGG | - | chr4.4:27308415-27308434 | MS.gene006962:intron | 40.0% | |
| ATGACATGCAAGACAGAAAC+AGG | + | chr4.4:27310491-27310510 | None:intergenic | 40.0% | |
| CAGTATTTGAGTATACGGAG+AGG | - | chr4.4:27309476-27309495 | MS.gene006962:intron | 40.0% | |
| CATCTGAACCCATCATATGT+TGG | - | chr4.4:27310668-27310687 | MS.gene006962:intron | 40.0% | |
| GATGAGAAAAAGATCCAGTG+AGG | + | chr4.4:27309311-27309330 | None:intergenic | 40.0% | |
| GCACGGTTTCTTTATACCAT+TGG | - | chr4.4:27309251-27309270 | MS.gene006962:intron | 40.0% | |
| GCATAATGTAATCCTTACCC+TGG | + | chr4.4:27308904-27308923 | None:intergenic | 40.0% | |
| GCATATCAAGCTCAAGATGT+TGG | + | chr4.4:27310075-27310094 | None:intergenic | 40.0% | |
| GTGTGTGAAGAAGATGAACA+GGG | + | chr4.4:27309384-27309403 | None:intergenic | 40.0% | |
| TGACATGACAAAATTGGCGA+TGG | - | chr4.4:27309201-27309220 | MS.gene006962:intron | 40.0% | |
| TGCCTTAACTTCAGACAGTA+GGG | + | chr4.4:27310328-27310347 | None:intergenic | 40.0% | |
| TGTGTGAAGAAGATGAACAG+GGG | + | chr4.4:27309383-27309402 | None:intergenic | 40.0% | |
| ! | ATAGAAGCAAAGGTGCGAAT+AGG | + | chr4.4:27309342-27309361 | None:intergenic | 40.0% |
| ! | ATGCCGGTTACAAATTCATG+TGG | - | chr4.4:27310392-27310411 | MS.gene006962:intron | 40.0% |
| ! | GTTTTCAGATCTGGGCATTA+AGG | + | chr4.4:27309406-27309425 | None:intergenic | 40.0% |
| !! | CTTTAATTTGAGACGGCCAT+AGG | + | chr4.4:27309582-27309601 | None:intergenic | 40.0% |
| !! | GCATTTCAGGGAGTTCTAAA+AGG | - | chr4.4:27308822-27308841 | MS.gene006962:intron | 40.0% |
| !! | GTTTTGAGCTATGCTATGAG+AGG | - | chr4.4:27308608-27308627 | MS.gene006962:intron | 40.0% |
| !!! | GGATTTTTCAGAAGCGTTGT+TGG | - | chr4.4:27310710-27310729 | MS.gene006962:intron | 40.0% |
| !!! | GTGTTTTTTCTACCAGGGTA+AGG | - | chr4.4:27308889-27308908 | MS.gene006962:intron | 40.0% |
| ACACACCAAATGCTGAGAAG+TGG | + | chr4.4:27308459-27308478 | None:intergenic | 45.0% | |
| ACTTCCCACTTCTCAGCATT+TGG | - | chr4.4:27308451-27308470 | MS.gene006962:intron | 45.0% | |
| AGTATACGGAGAGGGAAAGA+CGG | - | chr4.4:27309485-27309504 | MS.gene006962:intron | 45.0% | |
| CACACCAAATGCTGAGAAGT+GGG | + | chr4.4:27308458-27308477 | None:intergenic | 45.0% | |
| CCAGTAACAGTAGTGGCTAA+TGG | - | chr4.4:27310282-27310301 | MS.gene006962:CDS | 45.0% | |
| CCATTAGCCACTACTGTTAC+TGG | + | chr4.4:27310285-27310304 | None:intergenic | 45.0% | |
| CTAACATGCACAATGGCCAT+AGG | + | chr4.4:27309983-27310002 | None:intergenic | 45.0% | |
| CTGCCTTAACTTCAGACAGT+AGG | + | chr4.4:27310329-27310348 | None:intergenic | 45.0% | |
| GATGGACATCATTGATCCAG+TGG | - | chr4.4:27309930-27309949 | MS.gene006962:intron | 45.0% | |
| GCCTTAACTTCAGACAGTAG+GGG | + | chr4.4:27310327-27310346 | None:intergenic | 45.0% | |
| GGTGTGTGAAGAAGATGAAC+AGG | + | chr4.4:27309385-27309404 | None:intergenic | 45.0% | |
| GTCCATGGCTTCAAATTCAC+TGG | + | chr4.4:27310210-27310229 | None:intergenic | 45.0% | |
| TAATTGAAATGTTCGGGCGC+GGG | - | chr4.4:27308416-27308435 | MS.gene006962:intron | 45.0% | |
| TGCTGAGAAGTGGGAAGTTA+CGG | + | chr4.4:27308449-27308468 | None:intergenic | 45.0% | |
| ! | AAGCAAAGGTGCGAATAGGA+GGG | + | chr4.4:27309338-27309357 | None:intergenic | 45.0% |
| ! | ACCCCTACTGTCTGAAGTTA+AGG | - | chr4.4:27310323-27310342 | MS.gene006962:intron | 45.0% |
| ! | AGCCAGTGAATTTGAAGCCA+TGG | - | chr4.4:27310205-27310224 | MS.gene006962:intron | 45.0% |
| !! | AACGCATACGGTGTCACATA+AGG | - | chr4.4:27309054-27309073 | MS.gene006962:intron | 45.0% |
| !! | CAGAAGCGTTGTTGGTGAAT+TGG | - | chr4.4:27310718-27310737 | MS.gene006962:intron | 45.0% |
| !! | CTAGTTTTCCTATGCCTTCC+CGG | - | chr4.4:27310418-27310437 | MS.gene006962:intron | 45.0% |
| !!! | GAAGCCATGGACTTTTTTCC+TGG | - | chr4.4:27310218-27310237 | MS.gene006962:intron | 45.0% |
| !!! | TATTTATATTTTAATTTCTA+TGG | - | chr4.4:27308263-27308282 | MS.gene006962:intron | 5.0% |
| CTACAAGAGACTCGAGTCCA+GGG | + | chr4.4:27308183-27308202 | None:intergenic | 50.0% | |
| CTGTCACAAACCTACCTCAC+TGG | - | chr4.4:27309294-27309313 | MS.gene006962:intron | 50.0% | |
| CTTCTTGATCTGCCAAGGCT+AGG | - | chr4.4:27309840-27309859 | MS.gene006962:intron | 50.0% | |
| GAAGAAGATGAACAGGGGCA+GGG | + | chr4.4:27309378-27309397 | None:intergenic | 50.0% | |
| GCTGAGAAGTGGGAAGTTAC+GGG | + | chr4.4:27308448-27308467 | None:intergenic | 50.0% | |
| GTTTGCGCCAGTAACAGTAG+TGG | - | chr4.4:27310275-27310294 | MS.gene006962:CDS | 50.0% | |
| TAAGGGATGAGCTCTCAGCT+GGG | + | chr4.4:27310774-27310793 | None:intergenic | 50.0% | |
| TCTACAAGAGACTCGAGTCC+AGG | + | chr4.4:27308184-27308203 | None:intergenic | 50.0% | |
| TGAAGAAGATGAACAGGGGC+AGG | + | chr4.4:27309379-27309398 | None:intergenic | 50.0% | |
| TTAAGGGATGAGCTCTCAGC+TGG | + | chr4.4:27310775-27310794 | None:intergenic | 50.0% | |
| ! | AGGTGTTCAGCAGCTTGTTC+TGG | - | chr4.4:27310561-27310580 | MS.gene006962:intron | 50.0% |
| ! | GAAGCAAAGGTGCGAATAGG+AGG | + | chr4.4:27309339-27309358 | None:intergenic | 50.0% |
| ! | GGTGTTCAGCAGCTTGTTCT+GGG | - | chr4.4:27310562-27310581 | MS.gene006962:intron | 50.0% |
| ! | TTTTCTGGGTAGCCTAGCCT+TGG | + | chr4.4:27309855-27309874 | None:intergenic | 50.0% |
| AAAGTGAAGGGAGGGGAAGC+CGG | + | chr4.4:27310440-27310459 | None:intergenic | 55.0% | |
| AAGACGGTCAACCGCCATGT+AGG | - | chr4.4:27309501-27309520 | MS.gene006962:intron | 55.0% | |
| CTCTCAGCTGGGACAAGTCT+AGG | + | chr4.4:27310763-27310782 | None:intergenic | 55.0% | |
| TACTCTTGGCGCTTCGCCTA+TGG | - | chr4.4:27309563-27309582 | MS.gene006962:intron | 55.0% | |
| TGTGTCTGAGTCTCGCAGCT+AGG | - | chr4.4:27308474-27308493 | MS.gene006962:intron | 55.0% | |
| AAGTGAAGGGAGGGGAAGCC+GGG | + | chr4.4:27310439-27310458 | None:intergenic | 60.0% | |
| ACGGTCAACCGCCATGTAGG+CGG | - | chr4.4:27309504-27309523 | MS.gene006962:intron | 60.0% | |
| ACGGCAGAGAGCCGCCTACA+TGG | + | chr4.4:27309518-27309537 | None:intergenic | 65.0% | |
| AGACTCGAGTCCAGGGCCAC+CGG | + | chr4.4:27308176-27308195 | None:intergenic | 65.0% | |
| GCAGAGAGCCGCCTACATGG+CGG | + | chr4.4:27309515-27309534 | None:intergenic | 65.0% | |
| ! | AGGGGAAGCCGGGAAGGCAT+AGG | + | chr4.4:27310429-27310448 | None:intergenic | 65.0% |
| GAAGGGAGGGGAAGCCGGGA+AGG | + | chr4.4:27310435-27310454 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 27308166 | 27310811 | 27308166 | ID=MS.gene006962 |
| chr4.4 | mRNA | 27308166 | 27310811 | 27308166 | ID=MS.gene006962.t1;Parent=MS.gene006962 |
| chr4.4 | exon | 27310772 | 27310811 | 27310772 | ID=MS.gene006962.t1.exon1;Parent=MS.gene006962.t1 |
| chr4.4 | CDS | 27310772 | 27310811 | 27310772 | ID=cds.MS.gene006962.t1;Parent=MS.gene006962.t1 |
| chr4.4 | exon | 27310261 | 27310301 | 27310261 | ID=MS.gene006962.t1.exon2;Parent=MS.gene006962.t1 |
| chr4.4 | CDS | 27310261 | 27310301 | 27310261 | ID=cds.MS.gene006962.t1;Parent=MS.gene006962.t1 |
| chr4.4 | exon | 27310072 | 27310146 | 27310072 | ID=MS.gene006962.t1.exon3;Parent=MS.gene006962.t1 |
| chr4.4 | CDS | 27310072 | 27310146 | 27310072 | ID=cds.MS.gene006962.t1;Parent=MS.gene006962.t1 |
| chr4.4 | exon | 27308366 | 27308418 | 27308366 | ID=MS.gene006962.t1.exon4;Parent=MS.gene006962.t1 |
| chr4.4 | CDS | 27308366 | 27308418 | 27308366 | ID=cds.MS.gene006962.t1;Parent=MS.gene006962.t1 |
| chr4.4 | exon | 27308166 | 27308256 | 27308166 | ID=MS.gene006962.t1.exon5;Parent=MS.gene006962.t1 |
| chr4.4 | CDS | 27308166 | 27308256 | 27308166 | ID=cds.MS.gene006962.t1;Parent=MS.gene006962.t1 |
| Gene Sequence |
| Protein sequence |
