Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069884.t1 | KEH39543.1 | 85.6 | 271 | 35 | 4 | 1 | 270 | 1 | 268 | 7.10E-114 | 420.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069884.t1 | Q8LAL2 | 49.8 | 253 | 102 | 4 | 7 | 259 | 28 | 255 | 1.7e-55 | 217.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069884.t1 | A0A072VDM5 | 85.6 | 271 | 35 | 4 | 1 | 270 | 1 | 268 | 5.1e-114 | 420.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene069884.t1 | TR | AUX/IAA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene069884 | 0.820526 | 6.55E-53 | -1.69E-46 |
| MS.gene049350 | MS.gene069884 | 0.821719 | 3.48E-53 | -1.69E-46 |
| MS.gene049711 | MS.gene069884 | 0.846223 | 2.49E-59 | -1.69E-46 |
| MS.gene049850 | MS.gene069884 | 0.81374 | 2.20E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene069884 | 0.818663 | 1.74E-52 | -1.69E-46 |
| MS.gene051018 | MS.gene069884 | 0.820536 | 6.51E-53 | -1.69E-46 |
| MS.gene051021 | MS.gene069884 | 0.820364 | 7.13E-53 | -1.69E-46 |
| MS.gene051247 | MS.gene069884 | 0.812484 | 4.14E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene069884 | 0.85853 | 7.73E-63 | -1.69E-46 |
| MS.gene05157 | MS.gene069884 | 0.837006 | 6.70E-57 | -1.69E-46 |
| MS.gene051664 | MS.gene069884 | 0.821999 | 3.00E-53 | -1.69E-46 |
| MS.gene051719 | MS.gene069884 | 0.846399 | 2.23E-59 | -1.69E-46 |
| MS.gene051720 | MS.gene069884 | 0.874494 | 6.46E-68 | -1.69E-46 |
| MS.gene051744 | MS.gene069884 | 0.803201 | 3.90E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene069884 | 0.81744 | 3.29E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene069884 | 0.807776 | 4.29E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene069884 | 0.818905 | 1.54E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene069884 | 0.802283 | 6.04E-49 | -1.69E-46 |
| MS.gene052732 | MS.gene069884 | 0.809075 | 2.26E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene069884 | 0.832565 | 8.79E-56 | -1.69E-46 |
| MS.gene053226 | MS.gene069884 | 0.81311 | 3.02E-51 | -1.69E-46 |
| MS.gene053536 | MS.gene069884 | 0.813516 | 2.46E-51 | -1.69E-46 |
| MS.gene053538 | MS.gene069884 | 0.805866 | 1.09E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene069884 | 0.826193 | 3.10E-54 | -1.69E-46 |
| MS.gene054584 | MS.gene069884 | 0.837933 | 3.88E-57 | -1.69E-46 |
| MS.gene055144 | MS.gene069884 | 0.812213 | 4.75E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene069884 | 0.860607 | 1.84E-63 | -1.69E-46 |
| MS.gene055466 | MS.gene069884 | 0.85499 | 8.52E-62 | -1.69E-46 |
| MS.gene055467 | MS.gene069884 | 0.810924 | 9.05E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene069884 | 0.83532 | 1.80E-56 | -1.69E-46 |
| MS.gene055469 | MS.gene069884 | 0.844103 | 9.30E-59 | -1.69E-46 |
| MS.gene055537 | MS.gene069884 | 0.854862 | 9.28E-62 | -1.69E-46 |
| MS.gene055580 | MS.gene069884 | -0.801886 | 7.29E-49 | -1.69E-46 |
| MS.gene056005 | MS.gene069884 | 0.821726 | 3.46E-53 | -1.69E-46 |
| MS.gene056308 | MS.gene069884 | 0.835366 | 1.75E-56 | -1.69E-46 |
| MS.gene057082 | MS.gene069884 | 0.808183 | 3.51E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene069884 | 0.802753 | 4.83E-49 | -1.69E-46 |
| MS.gene058087 | MS.gene069884 | 0.819028 | 1.44E-52 | -1.69E-46 |
| MS.gene058339 | MS.gene069884 | 0.818737 | 1.68E-52 | -1.69E-46 |
| MS.gene058649 | MS.gene069884 | 0.835894 | 1.29E-56 | -1.69E-46 |
| MS.gene058668 | MS.gene069884 | 0.807764 | 4.31E-50 | -1.69E-46 |
| MS.gene05894 | MS.gene069884 | 0.808705 | 2.72E-50 | -1.69E-46 |
| MS.gene059439 | MS.gene069884 | 0.803399 | 3.55E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene069884 | 0.802658 | 5.05E-49 | -1.69E-46 |
| MS.gene060519 | MS.gene069884 | 0.846741 | 1.80E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069884.t1 | MTR_2g100780 | 94.096 | 271 | 12 | 4 | 1 | 270 | 1 | 268 | 1.69e-177 | 489 |
| MS.gene069884.t1 | MTR_2g100780 | 93.893 | 262 | 12 | 4 | 1 | 261 | 1 | 259 | 1.87e-170 | 471 |
| MS.gene069884.t1 | MTR_8g014520 | 54.545 | 275 | 97 | 9 | 6 | 263 | 4 | 267 | 9.22e-82 | 247 |
| MS.gene069884.t1 | MTR_8g014520 | 54.412 | 272 | 96 | 9 | 6 | 260 | 4 | 264 | 2.43e-81 | 246 |
| MS.gene069884.t1 | MTR_6g488150 | 37.959 | 245 | 119 | 8 | 18 | 256 | 21 | 238 | 1.26e-39 | 138 |
| MS.gene069884.t1 | MTR_1g069495 | 41.243 | 177 | 84 | 3 | 96 | 256 | 80 | 252 | 2.20e-38 | 135 |
| MS.gene069884.t1 | MTR_5g030710 | 42.135 | 178 | 81 | 5 | 80 | 256 | 163 | 319 | 1.43e-34 | 127 |
| MS.gene069884.t1 | MTR_8g103030 | 44.937 | 158 | 66 | 3 | 99 | 256 | 141 | 277 | 2.26e-34 | 125 |
| MS.gene069884.t1 | MTR_2g101500 | 43.678 | 174 | 75 | 5 | 86 | 256 | 157 | 310 | 2.97e-34 | 126 |
| MS.gene069884.t1 | MTR_1g070520 | 33.725 | 255 | 135 | 6 | 4 | 256 | 7 | 229 | 4.81e-34 | 124 |
| MS.gene069884.t1 | MTR_8g067530 | 40.741 | 189 | 87 | 6 | 70 | 256 | 175 | 340 | 9.15e-32 | 120 |
| MS.gene069884.t1 | MTR_5g067350 | 42.169 | 166 | 70 | 6 | 94 | 256 | 189 | 331 | 1.97e-31 | 119 |
| MS.gene069884.t1 | MTR_1g080860 | 39.205 | 176 | 83 | 6 | 84 | 256 | 83 | 237 | 5.99e-31 | 115 |
| MS.gene069884.t1 | MTR_1g080860 | 39.205 | 176 | 83 | 6 | 84 | 256 | 83 | 237 | 6.66e-31 | 115 |
| MS.gene069884.t1 | MTR_1g093240 | 35.000 | 200 | 109 | 4 | 57 | 256 | 42 | 220 | 1.13e-29 | 112 |
| MS.gene069884.t1 | MTR_1g093240 | 39.394 | 165 | 79 | 4 | 92 | 256 | 77 | 220 | 1.15e-29 | 112 |
| MS.gene069884.t1 | MTR_1g040675 | 32.787 | 244 | 97 | 7 | 13 | 256 | 2 | 178 | 1.23e-26 | 102 |
| MS.gene069884.t1 | MTR_7g096090 | 37.572 | 173 | 85 | 3 | 84 | 256 | 85 | 234 | 4.80e-26 | 103 |
| MS.gene069884.t1 | MTR_1g076270 | 36.628 | 172 | 60 | 6 | 87 | 256 | 50 | 174 | 2.20e-25 | 99.4 |
| MS.gene069884.t1 | MTR_1g093350 | 36.628 | 172 | 60 | 6 | 87 | 256 | 50 | 174 | 2.20e-25 | 99.4 |
| MS.gene069884.t1 | MTR_1g070830 | 31.405 | 242 | 101 | 9 | 18 | 256 | 18 | 197 | 2.27e-24 | 97.4 |
| MS.gene069884.t1 | MTR_1g093240 | 37.584 | 149 | 72 | 4 | 92 | 240 | 77 | 204 | 4.13e-22 | 91.3 |
| MS.gene069884.t1 | MTR_4g124300 | 40.000 | 105 | 46 | 2 | 150 | 254 | 94 | 181 | 2.18e-20 | 86.3 |
| MS.gene069884.t1 | MTR_7g110790 | 35.606 | 132 | 62 | 5 | 125 | 253 | 44 | 155 | 4.62e-20 | 84.7 |
| MS.gene069884.t1 | MTR_6g488150 | 34.483 | 174 | 83 | 6 | 18 | 185 | 21 | 169 | 6.55e-19 | 82.4 |
| MS.gene069884.t1 | MTR_4g011880 | 31.707 | 164 | 58 | 4 | 99 | 260 | 55 | 166 | 1.06e-18 | 81.6 |
| MS.gene069884.t1 | MTR_1g085750 | 34.014 | 147 | 65 | 6 | 125 | 260 | 49 | 174 | 1.18e-18 | 81.3 |
| MS.gene069884.t1 | MTR_1g040675 | 30.837 | 227 | 90 | 7 | 13 | 239 | 2 | 161 | 3.35e-18 | 79.7 |
| MS.gene069884.t1 | MTR_2g102490 | 39.048 | 105 | 54 | 2 | 152 | 255 | 88 | 183 | 9.85e-18 | 79.3 |
| MS.gene069884.t1 | MTR_4g115075 | 29.299 | 157 | 69 | 4 | 98 | 254 | 92 | 206 | 2.50e-17 | 78.6 |
| MS.gene069884.t1 | MTR_3g106850 | 29.747 | 158 | 74 | 5 | 99 | 256 | 89 | 209 | 4.81e-15 | 72.4 |
| MS.gene069884.t1 | MTR_1g085750 | 31.746 | 126 | 57 | 5 | 125 | 239 | 49 | 156 | 3.78e-12 | 63.2 |
| MS.gene069884.t1 | MTR_5g067350 | 38.947 | 95 | 37 | 3 | 94 | 185 | 189 | 265 | 7.41e-12 | 64.3 |
| MS.gene069884.t1 | MTR_1g109510 | 34.314 | 102 | 49 | 2 | 152 | 253 | 85 | 168 | 5.54e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069884.t1 | AT3G16500 | 55.020 | 249 | 87 | 4 | 11 | 259 | 32 | 255 | 8.02e-82 | 247 |
| MS.gene069884.t1 | AT3G16500 | 55.020 | 249 | 87 | 4 | 11 | 259 | 32 | 255 | 1.34e-81 | 246 |
| MS.gene069884.t1 | AT1G51950 | 49.600 | 250 | 91 | 5 | 12 | 259 | 37 | 253 | 1.02e-70 | 219 |
| MS.gene069884.t1 | AT5G25890 | 37.449 | 243 | 69 | 6 | 13 | 255 | 3 | 162 | 4.45e-38 | 132 |
| MS.gene069884.t1 | AT4G28640 | 43.353 | 173 | 79 | 5 | 92 | 256 | 76 | 237 | 2.22e-36 | 130 |
| MS.gene069884.t1 | AT4G28640 | 43.353 | 173 | 79 | 5 | 92 | 256 | 76 | 237 | 2.53e-36 | 130 |
| MS.gene069884.t1 | AT4G28640 | 41.243 | 177 | 90 | 5 | 83 | 256 | 72 | 237 | 1.41e-35 | 129 |
| MS.gene069884.t1 | AT2G33310 | 44.379 | 169 | 65 | 6 | 99 | 256 | 76 | 226 | 2.01e-34 | 125 |
| MS.gene069884.t1 | AT2G33310 | 44.379 | 169 | 65 | 6 | 99 | 256 | 76 | 226 | 2.01e-34 | 125 |
| MS.gene069884.t1 | AT2G33310 | 44.379 | 169 | 65 | 6 | 99 | 256 | 77 | 227 | 2.06e-34 | 125 |
| MS.gene069884.t1 | AT1G04550 | 41.398 | 186 | 93 | 7 | 81 | 261 | 50 | 224 | 2.75e-34 | 124 |
| MS.gene069884.t1 | AT4G29080 | 36.330 | 267 | 127 | 13 | 15 | 256 | 41 | 289 | 4.00e-34 | 125 |
| MS.gene069884.t1 | AT1G04100 | 41.358 | 162 | 87 | 4 | 100 | 255 | 95 | 254 | 1.27e-32 | 120 |
| MS.gene069884.t1 | AT2G22670 | 41.718 | 163 | 75 | 4 | 94 | 256 | 161 | 303 | 3.12e-31 | 118 |
| MS.gene069884.t1 | AT2G22670 | 41.718 | 163 | 75 | 4 | 94 | 256 | 161 | 303 | 3.12e-31 | 118 |
| MS.gene069884.t1 | AT2G22670 | 41.718 | 163 | 75 | 4 | 94 | 256 | 161 | 303 | 3.28e-31 | 118 |
| MS.gene069884.t1 | AT2G22670 | 41.718 | 163 | 75 | 4 | 94 | 256 | 161 | 303 | 3.28e-31 | 118 |
| MS.gene069884.t1 | AT2G22670 | 41.718 | 163 | 75 | 4 | 94 | 256 | 178 | 320 | 4.62e-31 | 118 |
| MS.gene069884.t1 | AT1G04250 | 34.274 | 248 | 113 | 6 | 15 | 256 | 10 | 213 | 8.65e-31 | 115 |
| MS.gene069884.t1 | AT5G65670 | 37.056 | 197 | 100 | 6 | 61 | 256 | 147 | 320 | 3.46e-30 | 115 |
| MS.gene069884.t1 | AT5G65670 | 37.056 | 197 | 100 | 6 | 61 | 256 | 147 | 320 | 4.15e-30 | 115 |
| MS.gene069884.t1 | AT3G04730 | 34.694 | 245 | 122 | 9 | 18 | 256 | 8 | 220 | 9.59e-30 | 112 |
| MS.gene069884.t1 | AT3G23050 | 38.182 | 165 | 88 | 3 | 92 | 256 | 76 | 226 | 3.90e-28 | 108 |
| MS.gene069884.t1 | AT4G14550 | 35.567 | 194 | 102 | 5 | 77 | 270 | 56 | 226 | 4.69e-28 | 107 |
| MS.gene069884.t1 | AT4G14550 | 38.788 | 165 | 79 | 4 | 92 | 256 | 70 | 212 | 1.37e-27 | 106 |
| MS.gene069884.t1 | AT3G15540 | 31.518 | 257 | 102 | 9 | 8 | 260 | 2 | 188 | 3.51e-27 | 104 |
| MS.gene069884.t1 | AT1G04240 | 30.612 | 196 | 85 | 5 | 71 | 256 | 27 | 181 | 4.33e-25 | 99.0 |
| MS.gene069884.t1 | AT1G04240 | 30.612 | 196 | 85 | 5 | 71 | 256 | 127 | 281 | 4.31e-24 | 98.6 |
| MS.gene069884.t1 | AT5G43700 | 32.022 | 178 | 75 | 4 | 86 | 260 | 47 | 181 | 5.50e-24 | 95.9 |
| MS.gene069884.t1 | AT3G23030 | 34.568 | 162 | 54 | 5 | 99 | 260 | 61 | 170 | 1.37e-21 | 89.4 |
| MS.gene069884.t1 | AT1G52830 | 29.508 | 244 | 100 | 10 | 18 | 260 | 12 | 184 | 5.22e-21 | 88.2 |
| MS.gene069884.t1 | AT3G23030 | 34.568 | 162 | 54 | 5 | 99 | 260 | 148 | 257 | 6.11e-21 | 89.7 |
| MS.gene069884.t1 | AT3G23050 | 36.242 | 149 | 81 | 3 | 92 | 240 | 76 | 210 | 2.07e-20 | 87.0 |
| MS.gene069884.t1 | AT4G14550 | 37.162 | 148 | 71 | 4 | 92 | 239 | 70 | 195 | 5.00e-20 | 85.9 |
| MS.gene069884.t1 | AT3G17600 | 37.736 | 106 | 45 | 2 | 148 | 253 | 70 | 154 | 3.56e-19 | 82.4 |
| MS.gene069884.t1 | AT2G46990 | 38.462 | 104 | 47 | 2 | 151 | 254 | 85 | 171 | 8.77e-19 | 81.6 |
| MS.gene069884.t1 | AT3G62100 | 37.500 | 104 | 48 | 2 | 151 | 254 | 83 | 169 | 1.04e-18 | 81.6 |
| MS.gene069884.t1 | AT4G14560 | 33.526 | 173 | 61 | 5 | 88 | 256 | 41 | 163 | 2.03e-16 | 75.1 |
| MS.gene069884.t1 | AT4G32280 | 25.989 | 177 | 95 | 4 | 99 | 262 | 95 | 248 | 1.24e-14 | 72.0 |
| MS.gene069884.t1 | AT1G04550 | 38.938 | 113 | 64 | 4 | 81 | 188 | 50 | 162 | 4.76e-13 | 66.2 |
| MS.gene069884.t1 | AT3G62100 | 37.079 | 89 | 39 | 2 | 151 | 239 | 83 | 154 | 5.18e-13 | 65.5 |
| MS.gene069884.t1 | AT4G23980 | 34.259 | 108 | 48 | 1 | 154 | 261 | 525 | 609 | 6.59e-13 | 68.9 |
| MS.gene069884.t1 | AT4G23980 | 34.259 | 108 | 48 | 1 | 154 | 261 | 527 | 611 | 7.11e-13 | 68.6 |
| MS.gene069884.t1 | AT2G46990 | 37.079 | 89 | 39 | 2 | 151 | 239 | 85 | 156 | 1.16e-12 | 64.7 |
| MS.gene069884.t1 | AT3G23050 | 35.106 | 94 | 51 | 1 | 92 | 185 | 76 | 159 | 4.89e-12 | 63.2 |
| MS.gene069884.t1 | AT4G32280 | 29.464 | 112 | 56 | 2 | 151 | 262 | 118 | 206 | 6.70e-12 | 63.5 |
| MS.gene069884.t1 | AT2G46530 | 31.429 | 105 | 49 | 1 | 153 | 257 | 406 | 487 | 1.70e-11 | 64.3 |
| MS.gene069884.t1 | AT2G46530 | 31.429 | 105 | 49 | 1 | 153 | 257 | 493 | 574 | 2.10e-11 | 64.3 |
| MS.gene069884.t1 | AT2G46530 | 31.429 | 105 | 49 | 1 | 153 | 257 | 514 | 595 | 2.70e-11 | 63.9 |
| MS.gene069884.t1 | AT4G14550 | 36.170 | 94 | 42 | 2 | 92 | 185 | 70 | 145 | 4.33e-11 | 60.8 |
Find 50 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGTTGAGTCTGAGATTC+TGG | 0.161798 | 2.1:-4117412 | None:intergenic |
| AACATATATTAATACCTTTA+AGG | 0.163444 | 2.1:-4117609 | None:intergenic |
| GAAAGTGATTACTGGATTAT+TGG | 0.223957 | 2.1:+4118210 | MS.gene069884:CDS |
| CTCTTTAGAGGACTCCTTAA+AGG | 0.227479 | 2.1:+4117595 | MS.gene069884:CDS |
| GGCCACCAATTCGTTCATTC+AGG | 0.331363 | 2.1:+4117350 | MS.gene069884:CDS |
| GACTACAACTATAGTAATAA+AGG | 0.343834 | 2.1:+4117472 | MS.gene069884:CDS |
| GAGGAAGAGAAAGTGATTAC+TGG | 0.355323 | 2.1:+4118202 | MS.gene069884:CDS |
| CTCTACTCTCTTAGGACAAC+AGG | 0.361485 | 2.1:-4115767 | None:intergenic |
| TTCTGTAACTCTACTCTCTT+AGG | 0.365893 | 2.1:-4115775 | None:intergenic |
| TGAGAGTCTTTGTTTGTTGT+TGG | 0.370100 | 2.1:-4115665 | None:intergenic |
| TTACTATAGTTGTAGTCAAT+AGG | 0.388726 | 2.1:-4117466 | None:intergenic |
| AGGAAAGAAAGCTTGAACTA+AGG | 0.413057 | 2.1:+4115605 | MS.gene069884:CDS |
| GCTGTGGATGAGCTCTTTAG+AGG | 0.423705 | 2.1:+4117583 | MS.gene069884:CDS |
| GTCTGAGATTCTGGTTGTGA+TGG | 0.455939 | 2.1:-4117403 | None:intergenic |
| AACAAACAAAGACTCTCATT+TGG | 0.459493 | 2.1:+4115670 | MS.gene069884:CDS |
| TTCTTCCTGAATGAACGAAT+TGG | 0.461192 | 2.1:-4117355 | None:intergenic |
| CACCTGGTGTTGAAGAAGAC+TGG | 0.475839 | 2.1:+4115635 | MS.gene069884:CDS |
| AACATGGATGGTGTTCCAAT+TGG | 0.487413 | 2.1:+4117511 | MS.gene069884:CDS |
| ATGAGGATAATGAAGGAGAC+AGG | 0.490984 | 2.1:+4118260 | MS.gene069884:CDS |
| GGCCAACCCACTACTGGTCC+AGG | 0.495601 | 2.1:-4117331 | None:intergenic |
| ACTGGATTATTGGATGGAAG+TGG | 0.500145 | 2.1:+4118220 | MS.gene069884:CDS |
| ATTGGTGGCCAACCCACTAC+TGG | 0.512048 | 2.1:-4117337 | None:intergenic |
| AATGAAGATGCTTACTGCCA+TGG | 0.519355 | 2.1:-4118301 | None:intergenic |
| CTCCTGGACCAGTAGTGGGT+TGG | 0.519977 | 2.1:+4117329 | MS.gene069884:CDS |
| GTGATTACTGGATTATTGGA+TGG | 0.521970 | 2.1:+4118214 | MS.gene069884:CDS |
| TTCTCTTCAAATTCAAACAA+TGG | 0.522441 | 2.1:+4115700 | MS.gene069884:CDS |
| GAACTAAGGCTTGGTCCACC+TGG | 0.527306 | 2.1:+4115619 | MS.gene069884:CDS |
| CTTGTTACCACCACAAGTAG+AGG | 0.528048 | 2.1:-4118173 | None:intergenic |
| AACAACAACAATGTTGCTGC+TGG | 0.531158 | 2.1:+4117436 | MS.gene069884:CDS |
| AGAGTATACTCTTGTATATG+AGG | 0.532161 | 2.1:+4118243 | MS.gene069884:CDS |
| AACTGCTCCTGGACCAGTAG+TGG | 0.534809 | 2.1:+4117324 | MS.gene069884:CDS |
| TTTCCAACACCTCTCAGAAA+AGG | 0.535342 | 2.1:+4115824 | MS.gene069884:CDS |
| TTCCTGAATGAACGAATTGG+TGG | 0.539764 | 2.1:-4117352 | None:intergenic |
| CTTGTATATGAGGATAATGA+AGG | 0.541105 | 2.1:+4118253 | MS.gene069884:CDS |
| AGAAAGCTTGAACTAAGGCT+TGG | 0.547085 | 2.1:+4115610 | MS.gene069884:CDS |
| ATGAAGATGCTTACTGCCAT+GGG | 0.556758 | 2.1:-4118300 | None:intergenic |
| GAAGGAGACAGGATGCTTGT+TGG | 0.558754 | 2.1:+4118271 | MS.gene069884:CDS |
| TGAAAATCTTTCTTCAGCTG+TGG | 0.566410 | 2.1:+4117567 | MS.gene069884:CDS |
| TGCTTGTTGGTGATGTCCCA+TGG | 0.568099 | 2.1:+4118284 | MS.gene069884:CDS |
| TGTTTGTATCAACAGTGAAG+AGG | 0.599382 | 2.1:+4119041 | MS.gene069884:CDS |
| CAACGAGATTCCTCTACTTG+TGG | 0.602220 | 2.1:+4118163 | MS.gene069884:CDS |
| ACTGCTCCTGGACCAGTAGT+GGG | 0.605389 | 2.1:+4117325 | MS.gene069884:CDS |
| AAGAGAGTAGAGTTACAGAA+TGG | 0.608229 | 2.1:+4115778 | MS.gene069884:CDS |
| CGAGATTCCTCTACTTGTGG+TGG | 0.613069 | 2.1:+4118166 | MS.gene069884:CDS |
| AACCAGTCTTCTTCAACACC+AGG | 0.614487 | 2.1:-4115637 | None:intergenic |
| TTTGTTAAGATCAACATGGA+TGG | 0.616572 | 2.1:+4117499 | MS.gene069884:CDS |
| TGGTGGTAACAAGAAAGAAG+AGG | 0.622799 | 2.1:+4118183 | MS.gene069884:CDS |
| AAATGAGAGAGAATCTTCTG+AGG | 0.628593 | 2.1:+4115585 | MS.gene069884:CDS |
| TTTGTTTGTTAAGATCAACA+TGG | 0.679515 | 2.1:+4117495 | MS.gene069884:CDS |
| CAGTCTTCTTCAACACCAGG+TGG | 0.689120 | 2.1:-4115634 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACTAAATAATAATTTTTG+AGG | + | chr2.1:4117051-4117070 | MS.gene069884:intron | 10.0% |
| !!! | AACTAAATAATAATTTTTGA+GGG | + | chr2.1:4117052-4117071 | MS.gene069884:intron | 10.0% |
| !! | AAAACTTTAGATATAGAAAA+AGG | - | chr2.1:4115857-4115876 | None:intergenic | 15.0% |
| !! | AACATATATTAATACCTTTA+AGG | - | chr2.1:4117612-4117631 | None:intergenic | 15.0% |
| !! | AATAAAAATTCAAAGCAATA+TGG | - | chr2.1:4118073-4118092 | None:intergenic | 15.0% |
| !! | ACTATGATTGAATTTAAAAA+AGG | - | chr2.1:4117641-4117660 | None:intergenic | 15.0% |
| !! | CAAAAACTTAAAATAAAAAG+TGG | + | chr2.1:4117011-4117030 | MS.gene069884:intron | 15.0% |
| !! | CTATGATTGAATTTAAAAAA+GGG | - | chr2.1:4117640-4117659 | None:intergenic | 15.0% |
| !! | TAACATATTGTAAATATGTA+GGG | + | chr2.1:4117112-4117131 | MS.gene069884:intron | 15.0% |
| !! | TATTGTTAGAAAACTATTAT+TGG | + | chr2.1:4118960-4118979 | MS.gene069884:intron | 15.0% |
| !! | TGTACTTATATATATCATTT+GGG | + | chr2.1:4116437-4116456 | MS.gene069884:intron | 15.0% |
| !! | TTGTACTTATATATATCATT+TGG | + | chr2.1:4116436-4116455 | MS.gene069884:intron | 15.0% |
| !!! | AAATAAAAGTTTACTTTTAC+AGG | - | chr2.1:4116754-4116773 | None:intergenic | 15.0% |
| !!! | AATAAAAGTTTACTTTTACA+GGG | - | chr2.1:4116753-4116772 | None:intergenic | 15.0% |
| !!! | ATTTTTTTAATGTATGTGTT+TGG | + | chr2.1:4119013-4119032 | MS.gene069884:intron | 15.0% |
| !!! | GTTATAATTCACATTTTAAA+GGG | - | chr2.1:4116609-4116628 | None:intergenic | 15.0% |
| !!! | GTTTTAATTCTTCAAAAATA+AGG | - | chr2.1:4116952-4116971 | None:intergenic | 15.0% |
| !!! | TAATCTATGTACTTTAAAAA+TGG | - | chr2.1:4118098-4118117 | None:intergenic | 15.0% |
| !!! | TAATTAATAATGGAAAAACA+TGG | - | chr2.1:4116036-4116055 | None:intergenic | 15.0% |
| !!! | TATTAGTTTTAATTTTTCCT+TGG | + | chr2.1:4116336-4116355 | MS.gene069884:intron | 15.0% |
| !!! | TTATTTTTATTTTAAGACAG+AGG | + | chr2.1:4115877-4115896 | MS.gene069884:intron | 15.0% |
| !! | AAATTCAACATTAATGCTTA+AGG | + | chr2.1:4117995-4118014 | MS.gene069884:intron | 20.0% |
| !! | AACACAATTGTATATTTGTA+AGG | - | chr2.1:4116782-4116801 | None:intergenic | 20.0% |
| !! | AAGTACAAAAAAGTTCAATT+GGG | + | chr2.1:4117870-4117889 | MS.gene069884:intron | 20.0% |
| !! | ATAGTGCAAATATTCTAAAT+AGG | + | chr2.1:4118727-4118746 | MS.gene069884:intron | 20.0% |
| !! | GAAAAAATATACTAGAAAGA+AGG | - | chr2.1:4116258-4116277 | None:intergenic | 20.0% |
| !! | GTAACATATTGTAAATATGT+AGG | + | chr2.1:4117111-4117130 | MS.gene069884:intron | 20.0% |
| !! | TAATTGTATTATTGCTAAGA+GGG | - | chr2.1:4118889-4118908 | None:intergenic | 20.0% |
| !! | TACAAATATACAATTGTGTT+TGG | + | chr2.1:4116782-4116801 | MS.gene069884:intron | 20.0% |
| !! | TTAATTGTATTATTGCTAAG+AGG | - | chr2.1:4118890-4118909 | None:intergenic | 20.0% |
| !! | TTATAAAGCTCTTTAACTAT+TGG | - | chr2.1:4117751-4117770 | None:intergenic | 20.0% |
| !!! | GCATTAGAATAAAATTTGTT+TGG | - | chr2.1:4118034-4118053 | None:intergenic | 20.0% |
| !!! | GGTTATAATTCACATTTTAA+AGG | - | chr2.1:4116610-4116629 | None:intergenic | 20.0% |
| !!! | TTCTAGTATATTTTTTCCTT+GGG | + | chr2.1:4116261-4116280 | MS.gene069884:intron | 20.0% |
| !!! | TTTCTAGTATATTTTTTCCT+TGG | + | chr2.1:4116260-4116279 | MS.gene069884:intron | 20.0% |
| ! | AATAAGGATCTCATTAGAAT+TGG | - | chr2.1:4116936-4116955 | None:intergenic | 25.0% |
| ! | AATAGTAATTATGAAGCACA+AGG | - | chr2.1:4118484-4118503 | None:intergenic | 25.0% |
| ! | AATTGTATTATTGCTAAGAG+GGG | - | chr2.1:4118888-4118907 | None:intergenic | 25.0% |
| ! | AGGCATGTAGTAATTAATAA+TGG | - | chr2.1:4116046-4116065 | None:intergenic | 25.0% |
| ! | ATCATGCTTAACTTTGTAAA+TGG | + | chr2.1:4117283-4117302 | MS.gene069884:intron | 25.0% |
| ! | ATGTACTATAGCATAAGATT+AGG | - | chr2.1:4118336-4118355 | None:intergenic | 25.0% |
| ! | CAAAAATAGTTACTAGTACA+TGG | - | chr2.1:4116156-4116175 | None:intergenic | 25.0% |
| ! | CTAAATAGGTCAAGTAATAT+GGG | + | chr2.1:4118741-4118760 | MS.gene069884:intron | 25.0% |
| ! | GAAGTACAAAAAAGTTCAAT+TGG | + | chr2.1:4117869-4117888 | MS.gene069884:intron | 25.0% |
| ! | GACTACAACTATAGTAATAA+AGG | + | chr2.1:4117472-4117491 | MS.gene069884:CDS | 25.0% |
| ! | GATCCCTCAATATAAAATAA+GGG | - | chr2.1:4116884-4116903 | None:intergenic | 25.0% |
| ! | GTTAGAAAACTATTATTGGT+AGG | + | chr2.1:4118964-4118983 | MS.gene069884:intron | 25.0% |
| ! | TAAAAAGTGGTATATTTGCT+TGG | + | chr2.1:4117024-4117043 | MS.gene069884:intron | 25.0% |
| ! | TACAATATGTTACTGTAGTT+AGG | - | chr2.1:4117104-4117123 | None:intergenic | 25.0% |
| ! | TACATGCCTTATATAAACAT+TGG | + | chr2.1:4116057-4116076 | MS.gene069884:intron | 25.0% |
| ! | TCTAAATAGGTCAAGTAATA+TGG | + | chr2.1:4118740-4118759 | MS.gene069884:intron | 25.0% |
| ! | TGATCCCTCAATATAAAATA+AGG | - | chr2.1:4116885-4116904 | None:intergenic | 25.0% |
| ! | TTACTATAGTTGTAGTCAAT+AGG | - | chr2.1:4117469-4117488 | None:intergenic | 25.0% |
| ! | TTCTCTTCAAATTCAAACAA+TGG | + | chr2.1:4115700-4115719 | MS.gene069884:CDS | 25.0% |
| ! | TTTGTGCCAATGTTTATATA+AGG | - | chr2.1:4116066-4116085 | None:intergenic | 25.0% |
| !! | ATTTTTGTCGAATAATCTAG+TGG | - | chr2.1:4116631-4116650 | None:intergenic | 25.0% |
| !! | CTCTGGTTATGAATTTTAAA+TGG | - | chr2.1:4116677-4116696 | None:intergenic | 25.0% |
| !! | TAAAATTCTTATAGAGTGTC+CGG | - | chr2.1:4116479-4116498 | None:intergenic | 25.0% |
| !! | TTTGTTTGTTAAGATCAACA+TGG | + | chr2.1:4117495-4117514 | MS.gene069884:CDS | 25.0% |
| !!! | AAGCCCTTATTTTATATTGA+GGG | + | chr2.1:4116878-4116897 | MS.gene069884:intron | 25.0% |
| !!! | ACATTTTAAAGGGAATAAGT+GGG | - | chr2.1:4116599-4116618 | None:intergenic | 25.0% |
| !!! | CTTTCTACTAGTTTTTAATG+TGG | + | chr2.1:4115968-4115987 | MS.gene069884:intron | 25.0% |
| !!! | TAAGCCCTTATTTTATATTG+AGG | + | chr2.1:4116877-4116896 | MS.gene069884:intron | 25.0% |
| !!! | TCTAGTATATTTTTTCCTTG+GGG | + | chr2.1:4116262-4116281 | MS.gene069884:intron | 25.0% |
| AACAAACAAAGACTCTCATT+TGG | + | chr2.1:4115670-4115689 | MS.gene069884:CDS | 30.0% | |
| AACACTTGTCATAAATCATG+TGG | - | chr2.1:4118794-4118813 | None:intergenic | 30.0% | |
| AGAGTATACTCTTGTATATG+AGG | + | chr2.1:4118243-4118262 | MS.gene069884:CDS | 30.0% | |
| ATTAAATCACACTAGTTAGC+AGG | - | chr2.1:4118940-4118959 | None:intergenic | 30.0% | |
| ATTCAATCATAGTACTCATG+TGG | + | chr2.1:4117648-4117667 | MS.gene069884:intron | 30.0% | |
| ATTTGAAGGGTTATGCTAAT+AGG | + | chr2.1:4117170-4117189 | MS.gene069884:intron | 30.0% | |
| CAACCACACACAAAATATAT+TGG | + | chr2.1:4116100-4116119 | MS.gene069884:intron | 30.0% | |
| CTTGTATATGAGGATAATGA+AGG | + | chr2.1:4118253-4118272 | MS.gene069884:CDS | 30.0% | |
| GAAAGTGATTACTGGATTAT+TGG | + | chr2.1:4118210-4118229 | MS.gene069884:CDS | 30.0% | |
| GACAAATTCAGATATTCACA+TGG | - | chr2.1:4116304-4116323 | None:intergenic | 30.0% | |
| GTAGCAAAAACTCAAGAAAT+GGG | - | chr2.1:4116723-4116742 | None:intergenic | 30.0% | |
| TAAACAGTGAAACTTGTAGT+AGG | - | chr2.1:4117261-4117280 | None:intergenic | 30.0% | |
| TCAACTAGGTCAAGTAATAT+GGG | - | chr2.1:4118528-4118547 | None:intergenic | 30.0% | |
| TGTAGGGTTACTATTTGATT+CGG | + | chr2.1:4117128-4117147 | MS.gene069884:intron | 30.0% | |
| TTTGTTAAGATCAACATGGA+TGG | + | chr2.1:4117499-4117518 | MS.gene069884:CDS | 30.0% | |
| ! | AAAACCATGCTTTTACTAGT+AGG | - | chr2.1:4117927-4117946 | None:intergenic | 30.0% |
| ! | AAACCATGCTTTTACTAGTA+GGG | - | chr2.1:4117926-4117945 | None:intergenic | 30.0% |
| ! | AGATCAACTTTTCTACCAAT+TGG | - | chr2.1:4117529-4117548 | None:intergenic | 30.0% |
| ! | ATATATTTTGTGTGTGGTTG+AGG | - | chr2.1:4116100-4116119 | None:intergenic | 30.0% |
| ! | TTGCCAATATATTTTGTGTG+TGG | - | chr2.1:4116106-4116125 | None:intergenic | 30.0% |
| !! | CACATTTTAAAGGGAATAAG+TGG | - | chr2.1:4116600-4116619 | None:intergenic | 30.0% |
| !! | TTTACTTTTACAGGGACTAA+AGG | - | chr2.1:4116745-4116764 | None:intergenic | 30.0% |
| !! | TTTCTTTCATTTTGAGAGAG+AGG | + | chr2.1:4117895-4117914 | MS.gene069884:intron | 30.0% |
| !!! | ATACCCATTTTTTAATGACG+AGG | - | chr2.1:4116364-4116383 | None:intergenic | 30.0% |
| !!! | TACCCATTTTTTAATGACGA+GGG | - | chr2.1:4116363-4116382 | None:intergenic | 30.0% |
| !!! | TGTTTTTTCTCCTACTATTG+TGG | + | chr2.1:4115922-4115941 | MS.gene069884:intron | 30.0% |
| AAATGAGAGAGAATCTTCTG+AGG | + | chr2.1:4115585-4115604 | MS.gene069884:CDS | 35.0% | |
| AAGAGAGTAGAGTTACAGAA+TGG | + | chr2.1:4115778-4115797 | MS.gene069884:CDS | 35.0% | |
| AGACATCTCTGAATCAAACA+TGG | - | chr2.1:4116198-4116217 | None:intergenic | 35.0% | |
| AGGAAAGAAAGCTTGAACTA+AGG | + | chr2.1:4115605-4115624 | MS.gene069884:CDS | 35.0% | |
| ATAGGTCAAGTAATATGGGA+CGG | + | chr2.1:4118745-4118764 | MS.gene069884:intron | 35.0% | |
| GGCACATAGTAAATAACAGA+TGG | - | chr2.1:4116237-4116256 | None:intergenic | 35.0% | |
| GGTAGCAAAAACTCAAGAAA+TGG | - | chr2.1:4116724-4116743 | None:intergenic | 35.0% | |
| GTCAACTAGGTCAAGTAATA+TGG | - | chr2.1:4118529-4118548 | None:intergenic | 35.0% | |
| GTCCCTCGTCATTAAAAAAT+GGG | + | chr2.1:4116358-4116377 | MS.gene069884:intron | 35.0% | |
| GTGATTACTGGATTATTGGA+TGG | + | chr2.1:4118214-4118233 | MS.gene069884:CDS | 35.0% | |
| TAAAAACATTGACCACACGA+CGG | - | chr2.1:4117675-4117694 | None:intergenic | 35.0% | |
| TGAAAATCTTTCTTCAGCTG+TGG | + | chr2.1:4117567-4117586 | MS.gene069884:CDS | 35.0% | |
| TGTTTGTATCAACAGTGAAG+AGG | + | chr2.1:4119041-4119060 | MS.gene069884:CDS | 35.0% | |
| TTCATCAACGTGTTTCGATA+CGG | + | chr2.1:4117713-4117732 | MS.gene069884:intron | 35.0% | |
| TTCTGTAACTCTACTCTCTT+AGG | - | chr2.1:4115778-4115797 | None:intergenic | 35.0% | |
| TTCTTCCTGAATGAACGAAT+TGG | - | chr2.1:4117358-4117377 | None:intergenic | 35.0% | |
| ! | AATGGTTTTCAACATGTGAG+AGG | + | chr2.1:4115718-4115737 | MS.gene069884:CDS | 35.0% |
| ! | ATATCATTTGGGTATTGCTC+AGG | + | chr2.1:4116448-4116467 | MS.gene069884:intron | 35.0% |
| ! | GATTGGATTTGGGATTTGAA+GGG | + | chr2.1:4117157-4117176 | MS.gene069884:intron | 35.0% |
| ! | TGATTGGATTTGGGATTTGA+AGG | + | chr2.1:4117156-4117175 | MS.gene069884:intron | 35.0% |
| !! | ATTTGATTCGGATGAGTGAT+TGG | + | chr2.1:4117140-4117159 | MS.gene069884:intron | 35.0% |
| !! | CGGAGGGAGTATTTAATTAA+AGG | + | chr2.1:4118765-4118784 | MS.gene069884:intron | 35.0% |
| !! | TGAGAGTCTTTGTTTGTTGT+TGG | - | chr2.1:4115668-4115687 | None:intergenic | 35.0% |
| !!! | AGCAGTTCTGTTTTTTTGGT+GGG | - | chr2.1:4117311-4117330 | None:intergenic | 35.0% |
| !!! | GTATATTTTTTCCTTGGGGT+TGG | + | chr2.1:4116266-4116285 | MS.gene069884:intron | 35.0% |
| AAATCACACTAGTTAGCAGG+AGG | - | chr2.1:4118937-4118956 | None:intergenic | 40.0% | |
| AAATTCATAACCAGAGCTCG+AGG | + | chr2.1:4116681-4116700 | MS.gene069884:intron | 40.0% | |
| AACAACAACAATGTTGCTGC+TGG | + | chr2.1:4117436-4117455 | MS.gene069884:CDS | 40.0% | |
| AACATGGATGGTGTTCCAAT+TGG | + | chr2.1:4117511-4117530 | MS.gene069884:CDS | 40.0% | |
| AAGGGAATAAGTGGGTGATT+AGG | - | chr2.1:4116591-4116610 | None:intergenic | 40.0% | |
| AATGAAGATGCTTACTGCCA+TGG | - | chr2.1:4118304-4118323 | None:intergenic | 40.0% | |
| AATTCATAACCAGAGCTCGA+GGG | + | chr2.1:4116682-4116701 | MS.gene069884:intron | 40.0% | |
| ACTGGATTATTGGATGGAAG+TGG | + | chr2.1:4118220-4118239 | MS.gene069884:CDS | 40.0% | |
| AGAAAGCTTGAACTAAGGCT+TGG | + | chr2.1:4115610-4115629 | MS.gene069884:CDS | 40.0% | |
| AGGGAATAAGTGGGTGATTA+GGG | - | chr2.1:4116590-4116609 | None:intergenic | 40.0% | |
| ATGAAGATGCTTACTGCCAT+GGG | - | chr2.1:4118303-4118322 | None:intergenic | 40.0% | |
| ATGAGGATAATGAAGGAGAC+AGG | + | chr2.1:4118260-4118279 | MS.gene069884:CDS | 40.0% | |
| CAAAAAAACAGAACTGCTCC+TGG | + | chr2.1:4117313-4117332 | MS.gene069884:intron | 40.0% | |
| CTAGGTCAAGTAATATGGGA+CGG | - | chr2.1:4118524-4118543 | None:intergenic | 40.0% | |
| GAAACAGAACAGAACTTGCA+TGG | - | chr2.1:4115949-4115968 | None:intergenic | 40.0% | |
| GAATCAAACATGGCTAGGAA+AGG | - | chr2.1:4116188-4116207 | None:intergenic | 40.0% | |
| GAGGAAGAGAAAGTGATTAC+TGG | + | chr2.1:4118202-4118221 | MS.gene069884:CDS | 40.0% | |
| GGTCCCTCGTCATTAAAAAA+TGG | + | chr2.1:4116357-4116376 | MS.gene069884:intron | 40.0% | |
| GTACCCTACTAGTAAAAGCA+TGG | + | chr2.1:4117920-4117939 | MS.gene069884:intron | 40.0% | |
| GTTTCGATACGGCTAGTATT+TGG | + | chr2.1:4117724-4117743 | MS.gene069884:intron | 40.0% | |
| TCGGATGAGTGATTGGATTT+GGG | + | chr2.1:4117147-4117166 | MS.gene069884:intron | 40.0% | |
| TCTCTGAATCAAACATGGCT+AGG | - | chr2.1:4116193-4116212 | None:intergenic | 40.0% | |
| TGGTGGTAACAAGAAAGAAG+AGG | + | chr2.1:4118183-4118202 | MS.gene069884:CDS | 40.0% | |
| TTCCTGAATGAACGAATTGG+TGG | - | chr2.1:4117355-4117374 | None:intergenic | 40.0% | |
| TTCGGATGAGTGATTGGATT+TGG | + | chr2.1:4117146-4117165 | MS.gene069884:intron | 40.0% | |
| TTTCCAACACCTCTCAGAAA+AGG | + | chr2.1:4115824-4115843 | MS.gene069884:CDS | 40.0% | |
| ! | CTCTTTAGAGGACTCCTTAA+AGG | + | chr2.1:4117595-4117614 | MS.gene069884:CDS | 40.0% |
| ! | GGTATAGTACCTTTTCTGAG+AGG | - | chr2.1:4115836-4115855 | None:intergenic | 40.0% |
| ! | TTGTGCATTGACATACGTGA+CGG | - | chr2.1:4118553-4118572 | None:intergenic | 40.0% |
| ! | TTTTTAATGACGAGGGACCA+AGG | - | chr2.1:4116356-4116375 | None:intergenic | 40.0% |
| !! | CTTTCATTTTGAGAGAGAGG+TGG | + | chr2.1:4117898-4117917 | MS.gene069884:intron | 40.0% |
| !! | TAGGGTTAGTTATGATCACG+AGG | - | chr2.1:4116572-4116591 | None:intergenic | 40.0% |
| !!! | CAGGAGCAGTTCTGTTTTTT+TGG | - | chr2.1:4117315-4117334 | None:intergenic | 40.0% |
| !!! | GAGCAGTTCTGTTTTTTTGG+TGG | - | chr2.1:4117312-4117331 | None:intergenic | 40.0% |
| !!! | GCAGTTCTGTTTTTTTGGTG+GGG | - | chr2.1:4117310-4117329 | None:intergenic | 40.0% |
| AACCAGTCTTCTTCAACACC+AGG | - | chr2.1:4115640-4115659 | None:intergenic | 45.0% | |
| ACCAGCTGTATGCTTCAGAT+TGG | + | chr2.1:4117964-4117983 | MS.gene069884:intron | 45.0% | |
| AGTATGTCAAACCAACCCCA+AGG | - | chr2.1:4116280-4116299 | None:intergenic | 45.0% | |
| ATCTGTAGCACTACATGCCA+TGG | + | chr2.1:4118824-4118843 | MS.gene069884:intron | 45.0% | |
| CAAAATGCCACATCGAGTGA+TGG | - | chr2.1:4118426-4118445 | None:intergenic | 45.0% | |
| CAACGAGATTCCTCTACTTG+TGG | + | chr2.1:4118163-4118182 | MS.gene069884:CDS | 45.0% | |
| CTCTACTCTCTTAGGACAAC+AGG | - | chr2.1:4115770-4115789 | None:intergenic | 45.0% | |
| CTTGCATGGACCACAATAGT+AGG | - | chr2.1:4115935-4115954 | None:intergenic | 45.0% | |
| CTTGTTACCACCACAAGTAG+AGG | - | chr2.1:4118176-4118195 | None:intergenic | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | + | chr2.1:4118749-4118768 | MS.gene069884:intron | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | - | chr2.1:4118768-4118749 | None:intergenic | 45.0% | |
| TCCAATTCCATCACTCGATG+TGG | + | chr2.1:4118416-4118435 | MS.gene069884:intron | 45.0% | |
| TGTGACAAACAGACATGCCA+TGG | - | chr2.1:4118844-4118863 | None:intergenic | 45.0% | |
| TTATTGCTAAGAGGGGACAG+TGG | - | chr2.1:4118881-4118900 | None:intergenic | 45.0% | |
| ! | ACCAATCTGAAGCATACAGC+TGG | - | chr2.1:4117968-4117987 | None:intergenic | 45.0% |
| ! | GTCTGAGATTCTGGTTGTGA+TGG | - | chr2.1:4117406-4117425 | None:intergenic | 45.0% |
| ! | TGCTGTTGAGTCTGAGATTC+TGG | - | chr2.1:4117415-4117434 | None:intergenic | 45.0% |
| !! | CTGCTTTTACACGTGAGTCA+TGG | + | chr2.1:4119092-4119111 | MS.gene069884:CDS | 45.0% |
| !! | GTACCTTTTCTGAGAGGTGT+TGG | - | chr2.1:4115830-4115849 | None:intergenic | 45.0% |
| !!! | TTGTTTTTTAATAAATTTTT+TGG | + | chr2.1:4116399-4116418 | MS.gene069884:intron | 5.0% |
| CAGTCTTCTTCAACACCAGG+TGG | - | chr2.1:4115637-4115656 | None:intergenic | 50.0% | |
| CGAGATTCCTCTACTTGTGG+TGG | + | chr2.1:4118166-4118185 | MS.gene069884:CDS | 50.0% | |
| GAAGGAGACAGGATGCTTGT+TGG | + | chr2.1:4118271-4118290 | MS.gene069884:CDS | 50.0% | |
| GCTGTGGATGAGCTCTTTAG+AGG | + | chr2.1:4117583-4117602 | MS.gene069884:CDS | 50.0% | |
| GGCCACCAATTCGTTCATTC+AGG | + | chr2.1:4117350-4117369 | MS.gene069884:CDS | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | + | chr2.1:4118748-4118767 | MS.gene069884:intron | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | - | chr2.1:4118767-4118748 | None:intergenic | 50.0% | |
| ! | CACCTGGTGTTGAAGAAGAC+TGG | + | chr2.1:4115635-4115654 | MS.gene069884:CDS | 50.0% |
| ! | CATACGTGACGGAGTCAACT+AGG | - | chr2.1:4118542-4118561 | None:intergenic | 50.0% |
| ! | GCCACATCGAGTGATGGAAT+TGG | - | chr2.1:4118420-4118439 | None:intergenic | 50.0% |
| !! | GGGTATTGCTCAGGAGTATC+CGG | + | chr2.1:4116457-4116476 | MS.gene069884:intron | 50.0% |
| !! | TGCTTGTTGGTGATGTCCCA+TGG | + | chr2.1:4118284-4118303 | MS.gene069884:CDS | 50.0% |
| AACTGCTCCTGGACCAGTAG+TGG | + | chr2.1:4117324-4117343 | MS.gene069884:CDS | 55.0% | |
| ACTGCTCCTGGACCAGTAGT+GGG | + | chr2.1:4117325-4117344 | MS.gene069884:CDS | 55.0% | |
| TAATTACCGCCCTCGAGCTC+TGG | - | chr2.1:4116694-4116713 | None:intergenic | 55.0% | |
| TACTCATGTGGACCGTCGTG+TGG | + | chr2.1:4117660-4117679 | MS.gene069884:intron | 55.0% | |
| TCATAACCAGAGCTCGAGGG+CGG | + | chr2.1:4116685-4116704 | MS.gene069884:intron | 55.0% | |
| ! | ATTGGTGGCCAACCCACTAC+TGG | - | chr2.1:4117340-4117359 | None:intergenic | 55.0% |
| ! | GAACTAAGGCTTGGTCCACC+TGG | + | chr2.1:4115619-4115638 | MS.gene069884:CDS | 55.0% |
| !! | CTCCTGGACCAGTAGTGGGT+TGG | + | chr2.1:4117329-4117348 | MS.gene069884:CDS | 60.0% |
| GGCCAACCCACTACTGGTCC+AGG | - | chr2.1:4117334-4117353 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 4115568 | 4119132 | 4115568 | ID=MS.gene069884 |
| chr2.1 | mRNA | 4115568 | 4119132 | 4115568 | ID=MS.gene069884.t1;Parent=MS.gene069884 |
| chr2.1 | exon | 4115568 | 4115845 | 4115568 | ID=MS.gene069884.t1.exon1;Parent=MS.gene069884.t1 |
| chr2.1 | CDS | 4115568 | 4115845 | 4115568 | ID=cds.MS.gene069884.t1;Parent=MS.gene069884.t1 |
| chr2.1 | exon | 4117324 | 4117616 | 4117324 | ID=MS.gene069884.t1.exon2;Parent=MS.gene069884.t1 |
| chr2.1 | CDS | 4117324 | 4117616 | 4117324 | ID=cds.MS.gene069884.t1;Parent=MS.gene069884.t1 |
| chr2.1 | exon | 4118161 | 4118308 | 4118161 | ID=MS.gene069884.t1.exon3;Parent=MS.gene069884.t1 |
| chr2.1 | CDS | 4118161 | 4118308 | 4118161 | ID=cds.MS.gene069884.t1;Parent=MS.gene069884.t1 |
| chr2.1 | exon | 4119039 | 4119132 | 4119039 | ID=MS.gene069884.t1.exon4;Parent=MS.gene069884.t1 |
| chr2.1 | CDS | 4119039 | 4119132 | 4119039 | ID=cds.MS.gene069884.t1;Parent=MS.gene069884.t1 |
| Gene Sequence |
| Protein sequence |
