Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070570.t1 | XP_003613763.2 | 82.8 | 942 | 107 | 6 | 1 | 921 | 1 | 908 | 0.00E+00 | 1184.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070570.t1 | G7KF75 | 82.8 | 942 | 107 | 6 | 1 | 921 | 1 | 908 | 0.0e+00 | 1184.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049801 | MS.gene070570 | 0.816129 | 6.48E-52 | -1.69E-46 |
| MS.gene050105 | MS.gene070570 | 0.812369 | 4.39E-51 | -1.69E-46 |
| MS.gene051122 | MS.gene070570 | 0.800789 | 1.22E-48 | -1.69E-46 |
| MS.gene051332 | MS.gene070570 | 0.80643 | 8.26E-50 | -1.69E-46 |
| MS.gene051368 | MS.gene070570 | 0.807978 | 3.88E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene070570 | 0.814037 | 1.89E-51 | -1.69E-46 |
| MS.gene052534 | MS.gene070570 | 0.80404 | 2.61E-49 | -1.69E-46 |
| MS.gene052674 | MS.gene070570 | 0.865264 | 6.70E-65 | -1.69E-46 |
| MS.gene052675 | MS.gene070570 | 0.863936 | 1.74E-64 | -1.69E-46 |
| MS.gene052677 | MS.gene070570 | 0.863136 | 3.09E-64 | -1.69E-46 |
| MS.gene053166 | MS.gene070570 | 0.804241 | 2.37E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene070570 | 0.846025 | 2.81E-59 | -1.69E-46 |
| MS.gene054641 | MS.gene070570 | 0.81923 | 1.30E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene070570 | 0.831618 | 1.51E-55 | -1.69E-46 |
| MS.gene055926 | MS.gene070570 | 0.812251 | 4.66E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene070570 | 0.802035 | 6.79E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene070570 | 0.80566 | 1.20E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene070570 | 0.824731 | 6.89E-54 | -1.69E-46 |
| MS.gene058979 | MS.gene070570 | 0.807865 | 4.10E-50 | -1.69E-46 |
| MS.gene059439 | MS.gene070570 | 0.815625 | 8.40E-52 | -1.69E-46 |
| MS.gene059952 | MS.gene070570 | 0.8095 | 1.84E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene070570 | 0.822508 | 2.28E-53 | -1.69E-46 |
| MS.gene06052 | MS.gene070570 | 0.801228 | 9.94E-49 | -1.69E-46 |
| MS.gene060777 | MS.gene070570 | 0.806402 | 8.37E-50 | -1.69E-46 |
| MS.gene060850 | MS.gene070570 | 0.824306 | 8.67E-54 | -1.69E-46 |
| MS.gene060851 | MS.gene070570 | 0.817219 | 3.69E-52 | -1.69E-46 |
| MS.gene060852 | MS.gene070570 | 0.818424 | 1.97E-52 | -1.69E-46 |
| MS.gene06121 | MS.gene070570 | 0.804516 | 2.08E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070570.t1 | MTR_5g040600 | 86.306 | 942 | 74 | 6 | 1 | 921 | 1 | 908 | 0.0 | 1462 |
| MS.gene070570.t1 | MTR_8g467380 | 58.919 | 370 | 126 | 7 | 545 | 895 | 452 | 814 | 2.46e-125 | 399 |
| MS.gene070570.t1 | MTR_7g010160 | 45.070 | 426 | 196 | 10 | 517 | 921 | 336 | 744 | 4.75e-109 | 353 |
| MS.gene070570.t1 | MTR_8g467390 | 47.866 | 328 | 151 | 6 | 519 | 832 | 42 | 363 | 5.59e-77 | 256 |
| MS.gene070570.t1 | MTR_4g005350 | 30.583 | 412 | 220 | 15 | 534 | 921 | 55 | 424 | 8.58e-32 | 129 |
| MS.gene070570.t1 | MTR_6g084440 | 30.599 | 317 | 194 | 9 | 610 | 921 | 305 | 600 | 2.32e-23 | 106 |
| MS.gene070570.t1 | MTR_6g084440 | 30.721 | 319 | 193 | 10 | 610 | 921 | 305 | 602 | 4.07e-22 | 102 |
| MS.gene070570.t1 | MTR_8g104270 | 30.888 | 259 | 152 | 7 | 678 | 921 | 315 | 561 | 4.30e-22 | 102 |
| MS.gene070570.t1 | MTR_8g467400 | 62.745 | 51 | 18 | 1 | 871 | 921 | 1 | 50 | 2.06e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070570.t1 | AT5G39785 | 41.363 | 411 | 200 | 12 | 540 | 921 | 207 | 605 | 6.10e-95 | 312 |
| MS.gene070570.t1 | AT5G39785 | 41.363 | 411 | 200 | 12 | 540 | 921 | 207 | 605 | 6.10e-95 | 312 |
| MS.gene070570.t1 | AT5G39785 | 41.363 | 411 | 200 | 12 | 540 | 921 | 207 | 605 | 6.10e-95 | 312 |
| MS.gene070570.t1 | AT5G39785 | 41.019 | 412 | 201 | 13 | 540 | 921 | 207 | 606 | 2.01e-92 | 305 |
| MS.gene070570.t1 | AT5G39785 | 38.991 | 436 | 200 | 13 | 540 | 921 | 207 | 630 | 2.34e-89 | 298 |
| MS.gene070570.t1 | AT1G69610 | 45.340 | 397 | 178 | 11 | 541 | 921 | 218 | 591 | 1.74e-87 | 291 |
| MS.gene070570.t1 | AT1G69610 | 45.340 | 397 | 178 | 11 | 541 | 921 | 263 | 636 | 8.57e-87 | 291 |
| MS.gene070570.t1 | AT1G69610 | 45.340 | 397 | 178 | 11 | 541 | 921 | 262 | 635 | 8.63e-87 | 291 |
| MS.gene070570.t1 | AT3G20260 | 29.341 | 334 | 194 | 11 | 610 | 921 | 123 | 436 | 2.31e-28 | 119 |
| MS.gene070570.t1 | AT1G73850 | 28.402 | 338 | 195 | 10 | 610 | 921 | 317 | 633 | 8.26e-26 | 114 |
| MS.gene070570.t1 | AT1G73850 | 28.402 | 338 | 195 | 10 | 610 | 921 | 317 | 633 | 8.26e-26 | 114 |
| MS.gene070570.t1 | AT3G01175 | 29.032 | 341 | 186 | 12 | 610 | 921 | 262 | 575 | 2.01e-22 | 103 |
Find 127 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAACTCTTTGTATGCATTT+TGG | 0.103094 | 5.3:+28420781 | None:intergenic |
| GATGATAAAGTTTCAAAATT+TGG | 0.171216 | 5.3:-28420423 | MS.gene070570:CDS |
| GTTCGAACAGATAAAGAAAA+TGG | 0.172724 | 5.3:-28418089 | MS.gene070570:CDS |
| CCATTTGAGATGGTGGATTT+TGG | 0.181688 | 5.3:+28419223 | None:intergenic |
| GTTGGTCCTCATGGTGCTTT+TGG | 0.185637 | 5.3:+28417150 | None:intergenic |
| CTTCATGTTCCAGCTATTAA+AGG | 0.195836 | 5.3:-28418875 | MS.gene070570:intron |
| TGTTTCAGGTTTCTTAATTT+AGG | 0.233000 | 5.3:-28421773 | MS.gene070570:intron |
| TTTAAAAGATCATGAGATTA+AGG | 0.248739 | 5.3:-28421036 | MS.gene070570:CDS |
| AAGAATCAATGCGTGTGTTT+TGG | 0.250995 | 5.3:-28418118 | MS.gene070570:CDS |
| AGAAATGGATCCTCACATTA+AGG | 0.286178 | 5.3:-28420367 | MS.gene070570:CDS |
| CTAAATTGGTTGAATCAATA+TGG | 0.311123 | 5.3:+28416960 | None:intergenic |
| CTAGTTCAAGTGGTTTAATC+TGG | 0.318389 | 5.3:-28420575 | MS.gene070570:CDS |
| TCATCAACTTCATATAGATT+TGG | 0.328013 | 5.3:-28419131 | MS.gene070570:CDS |
| GTTTCAATTTCATGAACATT+TGG | 0.329803 | 5.3:+28421380 | None:intergenic |
| AATTATGTGTTCTATTCATT+TGG | 0.341860 | 5.3:-28421906 | MS.gene070570:CDS |
| CTGGAGCAACAGCAACAAAA+TGG | 0.343164 | 5.3:-28420556 | MS.gene070570:CDS |
| TCATGATGATGGTAAGAAAA+TGG | 0.346383 | 5.3:-28421012 | MS.gene070570:CDS |
| GGTATTGAAATTAATTTAAG+AGG | 0.353651 | 5.3:+28419244 | None:intergenic |
| TGCAACCTTCCACTTGCAAT+TGG | 0.357673 | 5.3:+28418152 | None:intergenic |
| CATAAAACAGAACAAGAAAC+AGG | 0.368129 | 5.3:-28420933 | MS.gene070570:CDS |
| TCTTTCTCTGAATCAAGCTT+TGG | 0.373783 | 5.3:+28420759 | None:intergenic |
| GAAATGGATCCTCACATTAA+GGG | 0.383475 | 5.3:-28420366 | MS.gene070570:CDS |
| TAAAGAATCGTTGTGTGATT+AGG | 0.384028 | 5.3:-28418904 | MS.gene070570:CDS |
| TTTGCTACCAAGTAACTCAT+AGG | 0.388245 | 5.3:+28420521 | None:intergenic |
| ACTAGAAGGTTTGAAATTGC+AGG | 0.392608 | 5.3:+28418020 | None:intergenic |
| ACTTCATATAGATTTGGAAT+TGG | 0.398632 | 5.3:-28419125 | MS.gene070570:CDS |
| AAAAGATATAAGTTGCTTTG+TGG | 0.399117 | 5.3:-28420871 | MS.gene070570:CDS |
| GATTTGGAATTGGTATATGT+TGG | 0.401399 | 5.3:-28419115 | MS.gene070570:CDS |
| TTTACATAATTCTGAATCCT+TGG | 0.404409 | 5.3:+28418923 | None:intergenic |
| CCAACTTGATCATGAGCAAT+TGG | 0.406727 | 5.3:-28417132 | MS.gene070570:CDS |
| ATGAGAGATGAAGGAATAGA+AGG | 0.407287 | 5.3:-28420471 | MS.gene070570:CDS |
| AAACTATCAACCTTGAAATC+AGG | 0.414307 | 5.3:+28421692 | None:intergenic |
| TTGGATTGCGATTGATTTCA+AGG | 0.415118 | 5.3:-28417100 | MS.gene070570:CDS |
| TTTAATTCTTCAACCACTCT+TGG | 0.416981 | 5.3:+28420105 | None:intergenic |
| AGCTTCACTTCAATCTTCAA+TGG | 0.422108 | 5.3:+28420081 | None:intergenic |
| CATAGGTATAACCATGTTGC+TGG | 0.424551 | 5.3:-28419010 | MS.gene070570:CDS |
| TATCAAACCATGCATGCATT+AGG | 0.425507 | 5.3:-28419976 | MS.gene070570:intron |
| AATGTGATTTCTAAGCAAAT+TGG | 0.427664 | 5.3:-28418059 | MS.gene070570:CDS |
| TGAGAAAAGAACAAGTACTA+TGG | 0.427979 | 5.3:-28417058 | MS.gene070570:CDS |
| GTATTCGAATGTCCACTAGA+AGG | 0.428041 | 5.3:+28418006 | None:intergenic |
| CCAAAATCCACCATCTCAAA+TGG | 0.430562 | 5.3:-28419223 | MS.gene070570:CDS |
| AATAGATGAGAAGGATATAG+AGG | 0.431459 | 5.3:-28421066 | MS.gene070570:CDS |
| AAACTGAATCGCAATGTTGT+TGG | 0.431487 | 5.3:+28420843 | None:intergenic |
| TTGGACAAATTTGCCTCTCA+TGG | 0.432910 | 5.3:-28419096 | MS.gene070570:CDS |
| TGAAAATGAGTATATAGAAA+TGG | 0.433374 | 5.3:-28420382 | MS.gene070570:CDS |
| ATCCTTGGTCCACCTTGAAA+TGG | 0.434484 | 5.3:+28418938 | None:intergenic |
| AACTCTAATGTTATTGAAGA+TGG | 0.434844 | 5.3:-28421266 | MS.gene070570:CDS |
| CTGAAGGACATAGTAAGAAC+TGG | 0.437425 | 5.3:-28417194 | MS.gene070570:CDS |
| AAAGATGAAAAGGAAATAGA+AGG | 0.441294 | 5.3:-28421173 | MS.gene070570:CDS |
| ATGACTCACAAAGGTCTCAT+AGG | 0.444044 | 5.3:-28419027 | MS.gene070570:CDS |
| GCTAGAATTCAATGATCAAA+TGG | 0.452356 | 5.3:-28420061 | MS.gene070570:CDS |
| AAGTGAAAGATTTCTTTCAA+TGG | 0.455723 | 5.3:-28421411 | MS.gene070570:CDS |
| TTCAAAATCATGTTCTTCAA+AGG | 0.457677 | 5.3:+28420335 | None:intergenic |
| TTCAACTTCTTCTATGATTG+TGG | 0.458028 | 5.3:+28420167 | None:intergenic |
| TGGGAAACGGTTGAAACATC+AGG | 0.458060 | 5.3:+28420801 | None:intergenic |
| GGCTTTGAGAGCGAGGTGTT+TGG | 0.462606 | 5.3:-28420675 | MS.gene070570:CDS |
| TTCGAACAGATAAAGAAAAT+GGG | 0.468460 | 5.3:-28418088 | MS.gene070570:CDS |
| ATAGAGAATGAGCCATTTCA+AGG | 0.469644 | 5.3:-28418950 | MS.gene070570:CDS |
| GAATAATCTCTCAAAATTTG+TGG | 0.472353 | 5.3:-28419201 | MS.gene070570:CDS |
| AATATGTCACCTTTAATAGC+TGG | 0.477032 | 5.3:+28418866 | None:intergenic |
| ATTAGAGTTATTCTCCCCTA+TGG | 0.483772 | 5.3:+28421280 | None:intergenic |
| TTCAAAATTTGGAGTTGATG+AGG | 0.486316 | 5.3:-28420412 | MS.gene070570:CDS |
| AAAAGTGAAGAGGAATTGAA+TGG | 0.487614 | 5.3:-28420285 | MS.gene070570:CDS |
| GTCTCTGATGTTACTGAAGA+TGG | 0.488309 | 5.3:-28421095 | MS.gene070570:CDS |
| AATGAGAATGTAAATGAAGA+TGG | 0.489169 | 5.3:-28421203 | MS.gene070570:CDS |
| CATGATCAAGTTGGTCCTCA+TGG | 0.490699 | 5.3:+28417141 | None:intergenic |
| TGATAGTAAAGGAGGTGAGG+AGG | 0.491322 | 5.3:-28418177 | MS.gene070570:CDS |
| GATTATTCCATTTGAGATGG+TGG | 0.492227 | 5.3:+28419216 | None:intergenic |
| GAAATAATAGAGCATGCCAT+AGG | 0.494339 | 5.3:-28421296 | MS.gene070570:CDS |
| ATGGGAGCATGAAGAAATAG+TGG | 0.496187 | 5.3:-28420235 | MS.gene070570:CDS |
| GAGCAATTGGTTGCTCAAGT+TGG | 0.497738 | 5.3:-28417119 | MS.gene070570:CDS |
| GAAGATGAATCTGTTCAAGA+AGG | 0.497976 | 5.3:-28421437 | MS.gene070570:CDS |
| TCATACTCAGATTCTTCTTG+AGG | 0.513731 | 5.3:-28421881 | MS.gene070570:intron |
| AGATGATAGTAAAGGAGGTG+AGG | 0.520728 | 5.3:-28418180 | MS.gene070570:CDS |
| GTTCTCACCTAATGCATGCA+TGG | 0.527529 | 5.3:+28419969 | None:intergenic |
| TGCAATTTCAAACCTTCTAG+TGG | 0.527719 | 5.3:-28418018 | MS.gene070570:CDS |
| AGAGATTATTCCATTTGAGA+TGG | 0.527855 | 5.3:+28419213 | None:intergenic |
| GAGATTAAGGTTCATGATGA+TGG | 0.532953 | 5.3:-28421023 | MS.gene070570:CDS |
| AAGATGAATCTGTTCAAGAA+GGG | 0.538982 | 5.3:-28421436 | MS.gene070570:CDS |
| TAATAGCTGGAACATGAAGC+AGG | 0.539080 | 5.3:+28418879 | None:intergenic |
| AAGTTTATGATGAGAGATGA+AGG | 0.540736 | 5.3:-28420480 | MS.gene070570:CDS |
| GTATTGAAATTAATTTAAGA+GGG | 0.545143 | 5.3:+28419245 | None:intergenic |
| TGGACAAATTTGCCTCTCAT+GGG | 0.546353 | 5.3:-28419095 | MS.gene070570:CDS |
| AAATAATAGAGCATGCCATA+GGG | 0.546399 | 5.3:-28421295 | MS.gene070570:CDS |
| AGAGCTATGCAGAGAAAATG+AGG | 0.547615 | 5.3:-28420017 | MS.gene070570:CDS |
| TCAGAATCATCTAGTTCAAG+TGG | 0.552751 | 5.3:-28420585 | MS.gene070570:CDS |
| TGGTAACAAAATAGATGAGA+AGG | 0.553137 | 5.3:-28421075 | MS.gene070570:CDS |
| AATGGATGAAATTGAAACAA+GGG | 0.554219 | 5.3:-28420994 | MS.gene070570:CDS |
| CCAATTGCTCATGATCAAGT+TGG | 0.562526 | 5.3:+28417132 | None:intergenic |
| AGGTATGAAGAAAAGTGAAG+AGG | 0.564125 | 5.3:-28420295 | MS.gene070570:CDS |
| TCCACATGGCTTTGAGAGCG+AGG | 0.564370 | 5.3:-28420682 | MS.gene070570:CDS |
| CTAGAAGGTTTGAAATTGCA+GGG | 0.568663 | 5.3:+28418021 | None:intergenic |
| TGGATTGCGATTGATTTCAA+GGG | 0.573227 | 5.3:-28417099 | MS.gene070570:CDS |
| CTCAAAGCCATGTGGAACAT+CGG | 0.574342 | 5.3:+28420689 | None:intergenic |
| AGATGAAGGAATAGAAGGTG+TGG | 0.577847 | 5.3:-28420466 | MS.gene070570:CDS |
| AAATGGATGAAATTGAAACA+AGG | 0.579960 | 5.3:-28420995 | MS.gene070570:CDS |
| CATTCAACCGATGTTCCACA+TGG | 0.587101 | 5.3:-28420696 | MS.gene070570:CDS |
| TTTGAGAGCGAGGTGTTTGG+TGG | 0.588776 | 5.3:-28420672 | MS.gene070570:CDS |
| TTCTTAGATGATAGTAAAGG+AGG | 0.591113 | 5.3:-28418185 | MS.gene070570:intron |
| AGGATCCAATTGCAAGTGGA+AGG | 0.591596 | 5.3:-28418157 | MS.gene070570:CDS |
| AACATAAGATTTCCCATGAG+AGG | 0.593117 | 5.3:+28419083 | None:intergenic |
| TCTCATGGGAAATCTTATGT+TGG | 0.599410 | 5.3:-28419081 | MS.gene070570:CDS |
| TGATTCTTAGATGATAGTAA+AGG | 0.600208 | 5.3:-28418188 | MS.gene070570:intron |
| TTTATGATCATGAACATCGA+AGG | 0.601174 | 5.3:+28420950 | None:intergenic |
| AATTCACCATCACAATCACT+TGG | 0.601313 | 5.3:-28421728 | MS.gene070570:CDS |
| ATTGCGATTGATTTCAAGGG+TGG | 0.601997 | 5.3:-28417096 | MS.gene070570:CDS |
| CCATCACAATCACTTGGTGA+TGG | 0.602096 | 5.3:-28421722 | MS.gene070570:CDS |
| TCTAATGTTATTGAAGATGG+AGG | 0.604097 | 5.3:-28421263 | MS.gene070570:CDS |
| GAGTGTGAAATACATGAAGA+GGG | 0.604673 | 5.3:-28421476 | MS.gene070570:CDS |
| AGATGAATCTGTTCAAGAAG+GGG | 0.608808 | 5.3:-28421435 | MS.gene070570:CDS |
| AAGCAGGAAGATTGTCCATG+TGG | 0.609998 | 5.3:-28417003 | MS.gene070570:CDS |
| CATTCGAATACAACTACAGA+AGG | 0.615061 | 5.3:-28417994 | MS.gene070570:intron |
| GAGGAGGATCCAATTGCAAG+TGG | 0.618801 | 5.3:-28418161 | MS.gene070570:CDS |
| AGCCATTTCAAGGTGGACCA+AGG | 0.623624 | 5.3:-28418940 | MS.gene070570:CDS |
| TGAGTGTGAAATACATGAAG+AGG | 0.633059 | 5.3:-28421477 | MS.gene070570:CDS |
| ACCTCGCTCTCAAAGCCATG+TGG | 0.637754 | 5.3:+28420681 | None:intergenic |
| TACAACAATATGACTCACAA+AGG | 0.643031 | 5.3:-28419036 | MS.gene070570:CDS |
| AATAATAGAGCATGCCATAG+GGG | 0.654299 | 5.3:-28421294 | MS.gene070570:CDS |
| GTTGAAACTCACCAGCAACA+TGG | 0.660906 | 5.3:+28418999 | None:intergenic |
| CCATCACCAAGTGATTGTGA+TGG | 0.664557 | 5.3:+28421722 | None:intergenic |
| TTGAAGAATTCAAGACAAGG+AGG | 0.678769 | 5.3:-28420195 | MS.gene070570:CDS |
| TAAAACAGAACAAGAAACAG+GGG | 0.687294 | 5.3:-28420931 | MS.gene070570:CDS |
| ATAAAACAGAACAAGAAACA+GGG | 0.691689 | 5.3:-28420932 | MS.gene070570:CDS |
| GAGAATGAGCCATTTCAAGG+TGG | 0.715727 | 5.3:-28418947 | MS.gene070570:CDS |
| GACGTTCCAAAAGCACCATG+AGG | 0.722542 | 5.3:-28417156 | MS.gene070570:CDS |
| GAATTGAAGAATTCAAGACA+AGG | 0.733492 | 5.3:-28420198 | MS.gene070570:CDS |
| TGTGAAAACAGAGATATACG+TGG | 0.758781 | 5.3:-28421522 | MS.gene070570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATTAAATATTATTTT+TGG | + | chr5.3:28421489-28421508 | None:intergenic | 0.0% |
| !! | ATAATTTATAAGAGTAATTA+TGG | - | chr5.3:28420176-28420195 | MS.gene070570:CDS | 10.0% |
| !! | TTACTTTAATCTTAAATAAA+TGG | - | chr5.3:28421527-28421546 | MS.gene070570:CDS | 10.0% |
| !!! | AAATTAAATATTATTTTTGG+AGG | + | chr5.3:28421486-28421505 | None:intergenic | 10.0% |
| !! | AAATAAACAAGATATCTTTA+TGG | + | chr5.3:28419333-28419352 | None:intergenic | 15.0% |
| !! | AATTAGTCATAATAATCAAA+TGG | + | chr5.3:28419609-28419628 | None:intergenic | 15.0% |
| !! | ACATAATTAGTAAAATATGT+TGG | + | chr5.3:28419308-28419327 | None:intergenic | 15.0% |
| !! | CATAATTAGTAAAATATGTT+GGG | + | chr5.3:28419307-28419326 | None:intergenic | 15.0% |
| !! | CTTTACATACTAAATTTAAT+AGG | - | chr5.3:28420614-28420633 | MS.gene070570:CDS | 15.0% |
| !! | GTATTGAAATTAATTTAAGA+GGG | + | chr5.3:28419677-28419696 | None:intergenic | 15.0% |
| !! | TTTATTATATATAAAGTGCA+TGG | - | chr5.3:28417098-28417117 | MS.gene070570:CDS | 15.0% |
| !!! | AAAACTAACTTGTAAAATTA+AGG | + | chr5.3:28421120-28421139 | None:intergenic | 15.0% |
| !!! | AAACATTTTTTTTTCAGATT+CGG | + | chr5.3:28421401-28421420 | None:intergenic | 15.0% |
| !!! | TCTCTCAAATAATTTAATTT+TGG | + | chr5.3:28421324-28421343 | None:intergenic | 15.0% |
| !!! | TGATAAGATACTATTTTTTA+GGG | + | chr5.3:28420108-28420127 | None:intergenic | 15.0% |
| !!! | TTAATAGGAGAATATTTTAT+AGG | - | chr5.3:28420629-28420648 | MS.gene070570:CDS | 15.0% |
| !!! | TTGATAAGATACTATTTTTT+AGG | + | chr5.3:28420109-28420128 | None:intergenic | 15.0% |
| !! | AATTATGTGTTCTATTCATT+TGG | - | chr5.3:28417013-28417032 | MS.gene070570:CDS | 20.0% |
| !! | AGCATATAATAAAGTTAAGT+AGG | - | chr5.3:28419522-28419541 | MS.gene070570:intron | 20.0% |
| !! | AGGTTTACTTTATATACTAA+AGG | - | chr5.3:28419439-28419458 | MS.gene070570:intron | 20.0% |
| !! | CTTTATCATCAAAAAAAGAT+TGG | + | chr5.3:28418486-28418505 | None:intergenic | 20.0% |
| !! | GATGATAAAGTTTCAAAATT+TGG | - | chr5.3:28418496-28418515 | MS.gene070570:intron | 20.0% |
| !! | TGAAAATGAGTATATAGAAA+TGG | - | chr5.3:28418537-28418556 | MS.gene070570:intron | 20.0% |
| !! | TTTAAAAGATCATGAGATTA+AGG | - | chr5.3:28417883-28417902 | MS.gene070570:intron | 20.0% |
| !!! | AGTTGTCTAATTTTCTTTTT+TGG | - | chr5.3:28417258-28417277 | MS.gene070570:intron | 20.0% |
| !!! | ATAGAATTGAATTGATTCTA+AGG | - | chr5.3:28421040-28421059 | MS.gene070570:CDS | 20.0% |
| !!! | ATTTTACAAGTTAGTTTTGT+TGG | - | chr5.3:28421122-28421141 | MS.gene070570:CDS | 20.0% |
| !!! | CAAATGATTTTTCTCTATAT+TGG | + | chr5.3:28420271-28420290 | None:intergenic | 20.0% |
| !!! | CTATTGTGTATATCTTTTAA+TGG | - | chr5.3:28420463-28420482 | MS.gene070570:CDS | 20.0% |
| !!! | GATGAACAAGTTTTAAAAAT+GGG | + | chr5.3:28419773-28419792 | None:intergenic | 20.0% |
| !!! | GGTATTGAAATTAATTTAAG+AGG | + | chr5.3:28419678-28419697 | None:intergenic | 20.0% |
| !!! | TGATGAACAAGTTTTAAAAA+TGG | + | chr5.3:28419774-28419793 | None:intergenic | 20.0% |
| !!! | TGTTTTGTTTATTTTGTTTC+AGG | - | chr5.3:28417132-28417151 | MS.gene070570:CDS | 20.0% |
| !!! | TTCTAATTAAACGCATTTTA+AGG | + | chr5.3:28421092-28421111 | None:intergenic | 20.0% |
| ! | AAAGATGAAAAGGAAATAGA+AGG | - | chr5.3:28417746-28417765 | MS.gene070570:intron | 25.0% |
| ! | AAAGTAAACCTATGAAGAAT+AGG | + | chr5.3:28419430-28419449 | None:intergenic | 25.0% |
| ! | AAATGGATGAAATTGAAACA+AGG | - | chr5.3:28417924-28417943 | MS.gene070570:intron | 25.0% |
| ! | AACTCTAATGTTATTGAAGA+TGG | - | chr5.3:28417653-28417672 | MS.gene070570:intron | 25.0% |
| ! | AAGTGAAAGATTTCTTTCAA+TGG | - | chr5.3:28417508-28417527 | MS.gene070570:intron | 25.0% |
| ! | AATGAGAATGTAAATGAAGA+TGG | - | chr5.3:28417716-28417735 | MS.gene070570:intron | 25.0% |
| ! | AATGGATGAAATTGAAACAA+GGG | - | chr5.3:28417925-28417944 | MS.gene070570:intron | 25.0% |
| ! | AATGTGATTTCTAAGCAAAT+TGG | - | chr5.3:28420860-28420879 | MS.gene070570:CDS | 25.0% |
| ! | ATAAAACAGAACAAGAAACA+GGG | - | chr5.3:28417987-28418006 | MS.gene070570:intron | 25.0% |
| ! | ATGATCACTGTATAATGTAT+GGG | + | chr5.3:28420523-28420542 | None:intergenic | 25.0% |
| ! | GAATAATCTCTCAAAATTTG+TGG | - | chr5.3:28419718-28419737 | MS.gene070570:intron | 25.0% |
| ! | GTTTCAATTTCATGAACATT+TGG | + | chr5.3:28417542-28417561 | None:intergenic | 25.0% |
| ! | TATGATCACTGTATAATGTA+TGG | + | chr5.3:28420524-28420543 | None:intergenic | 25.0% |
| ! | TATGGAAAAAGCAAAAAAGA+AGG | + | chr5.3:28421944-28421963 | None:intergenic | 25.0% |
| ! | TCATCAACTTCATATAGATT+TGG | - | chr5.3:28419788-28419807 | MS.gene070570:intron | 25.0% |
| ! | TCCTGCTTAAAAATTTGATT+CGG | + | chr5.3:28421904-28421923 | None:intergenic | 25.0% |
| ! | TGACTTCAATCTACAATATT+TGG | + | chr5.3:28419140-28419159 | None:intergenic | 25.0% |
| ! | TGATTCTTAGATGATAGTAA+AGG | - | chr5.3:28420731-28420750 | MS.gene070570:CDS | 25.0% |
| ! | TGGCATGTTAAAAAAACAAA+AGG | + | chr5.3:28421304-28421323 | None:intergenic | 25.0% |
| ! | TGGTATGAAAAAAGATGAAA+AGG | - | chr5.3:28417736-28417755 | MS.gene070570:intron | 25.0% |
| ! | TTCAAAATCATGTTCTTCAA+AGG | + | chr5.3:28418587-28418606 | None:intergenic | 25.0% |
| ! | TTCGAACAGATAAAGAAAAT+GGG | - | chr5.3:28420831-28420850 | MS.gene070570:CDS | 25.0% |
| ! | TTTACATAATTCTGAATCCT+TGG | + | chr5.3:28419999-28420018 | None:intergenic | 25.0% |
| !! | AAAAGATATAAGTTGCTTTG+TGG | - | chr5.3:28418048-28418067 | MS.gene070570:CDS | 25.0% |
| !! | AAACTCTTTGTATGCATTTT+GGG | + | chr5.3:28418140-28418159 | None:intergenic | 25.0% |
| !! | ACTTCATATAGATTTGGAAT+TGG | - | chr5.3:28419794-28419813 | MS.gene070570:intron | 25.0% |
| !! | ATCTTTTTCCTATTCTTCAT+AGG | - | chr5.3:28419419-28419438 | MS.gene070570:intron | 25.0% |
| !! | TAAATCAAACGACATCTTTT+TGG | + | chr5.3:28421363-28421382 | None:intergenic | 25.0% |
| !! | TGATGAAGATGATTTTGAAT+GGG | - | chr5.3:28418666-28418685 | MS.gene070570:intron | 25.0% |
| !!! | ACAAATTGATTTTAGTGACT+TGG | - | chr5.3:28421016-28421035 | MS.gene070570:CDS | 25.0% |
| !!! | AGTTTTGTTTGCTTGAAAAA+TGG | - | chr5.3:28417566-28417585 | MS.gene070570:intron | 25.0% |
| !!! | CAAATTGATTTTAGTGACTT+GGG | - | chr5.3:28421017-28421036 | MS.gene070570:CDS | 25.0% |
| !!! | GAATTTTGTTTTGCTTTTTG+AGG | - | chr5.3:28417067-28417086 | MS.gene070570:CDS | 25.0% |
| !!! | GAGTTAGATTCTAAAATATG+TGG | - | chr5.3:28421148-28421167 | MS.gene070570:CDS | 25.0% |
| !!! | TGTTTCAGGTTTCTTAATTT+AGG | - | chr5.3:28417146-28417165 | MS.gene070570:CDS | 25.0% |
| !!! | TTAAACGCATTTTAAGGATA+TGG | + | chr5.3:28421086-28421105 | None:intergenic | 25.0% |
| !!! | TTTGAATTTTGTTTCTGTGA+GGG | - | chr5.3:28416979-28416998 | MS.gene070570:CDS | 25.0% |
| !!! | TTTTTCAAGTATTGATGCAA+AGG | - | chr5.3:28419943-28419962 | MS.gene070570:intron | 25.0% |
| AAAAGTGAAGAGGAATTGAA+TGG | - | chr5.3:28418634-28418653 | MS.gene070570:intron | 30.0% | |
| AAACTATCAACCTTGAAATC+AGG | + | chr5.3:28417230-28417249 | None:intergenic | 30.0% | |
| AAATAATAGAGCATGCCATA+GGG | - | chr5.3:28417624-28417643 | MS.gene070570:intron | 30.0% | |
| AAGATCAAAACATGAAGTCT+TGG | - | chr5.3:28419072-28419091 | MS.gene070570:CDS | 30.0% | |
| AAGATGAATCTGTTCAAGAA+GGG | - | chr5.3:28417483-28417502 | MS.gene070570:intron | 30.0% | |
| AAGTTTATGATGAGAGATGA+AGG | - | chr5.3:28418439-28418458 | MS.gene070570:intron | 30.0% | |
| AATAGATGAGAAGGATATAG+AGG | - | chr5.3:28417853-28417872 | MS.gene070570:intron | 30.0% | |
| AATATGTCACCTTTAATAGC+TGG | + | chr5.3:28420056-28420075 | None:intergenic | 30.0% | |
| ACCATGTTTCTCAACATTAT+CGG | + | chr5.3:28420243-28420262 | None:intergenic | 30.0% | |
| ACTAAATCATCTTCACTTCT+TGG | - | chr5.3:28418971-28418990 | MS.gene070570:CDS | 30.0% | |
| AGAGATTATTCCATTTGAGA+TGG | + | chr5.3:28419709-28419728 | None:intergenic | 30.0% | |
| AGCTAAATGACGTGTATATT+AGG | - | chr5.3:28420389-28420408 | MS.gene070570:CDS | 30.0% | |
| ATAATGTTGAGAAACATGGT+AGG | - | chr5.3:28420243-28420262 | MS.gene070570:CDS | 30.0% | |
| CATAAAACAGAACAAGAAAC+AGG | - | chr5.3:28417986-28418005 | MS.gene070570:intron | 30.0% | |
| CCTTAACACATTGAGAATAT+GGG | + | chr5.3:28420422-28420441 | None:intergenic | 30.0% | |
| GAAGTGAAAGATCAAAAAGA+AGG | - | chr5.3:28418604-28418623 | MS.gene070570:intron | 30.0% | |
| GAATTGAAGAATTCAAGACA+AGG | - | chr5.3:28418721-28418740 | MS.gene070570:intron | 30.0% | |
| GCTAAATGACGTGTATATTA+GGG | - | chr5.3:28420390-28420409 | MS.gene070570:CDS | 30.0% | |
| GCTAGAATTCAATGATCAAA+TGG | - | chr5.3:28418858-28418877 | MS.gene070570:intron | 30.0% | |
| GTTCGAACAGATAAAGAAAA+TGG | - | chr5.3:28420830-28420849 | MS.gene070570:CDS | 30.0% | |
| TAAAACAGAACAAGAAACAG+GGG | - | chr5.3:28417988-28418007 | MS.gene070570:intron | 30.0% | |
| TAAAGAATCGTTGTGTGATT+AGG | - | chr5.3:28420015-28420034 | MS.gene070570:CDS | 30.0% | |
| TAAGGATTGAGATGAAGATT+TGG | - | chr5.3:28420437-28420456 | MS.gene070570:CDS | 30.0% | |
| TAATGTTGAGAAACATGGTA+GGG | - | chr5.3:28420244-28420263 | MS.gene070570:CDS | 30.0% | |
| TACAACAATATGACTCACAA+AGG | - | chr5.3:28419883-28419902 | MS.gene070570:intron | 30.0% | |
| TCCTTAACACATTGAGAATA+TGG | + | chr5.3:28420423-28420442 | None:intergenic | 30.0% | |
| TCTAATGTTATTGAAGATGG+AGG | - | chr5.3:28417656-28417675 | MS.gene070570:intron | 30.0% | |
| TGAAGAACAAGAAGAAAAAG+AGG | - | chr5.3:28418192-28418211 | MS.gene070570:intron | 30.0% | |
| TGAGAAAAGAACAAGTACTA+TGG | - | chr5.3:28421861-28421880 | MS.gene070570:intron | 30.0% | |
| TGATCACTGTATAATGTATG+GGG | + | chr5.3:28420522-28420541 | None:intergenic | 30.0% | |
| TGGTAACAAAATAGATGAGA+AGG | - | chr5.3:28417844-28417863 | MS.gene070570:intron | 30.0% | |
| TTCAACTTCTTCTATGATTG+TGG | + | chr5.3:28418755-28418774 | None:intergenic | 30.0% | |
| TTCTTAGATGATAGTAAAGG+AGG | - | chr5.3:28420734-28420753 | MS.gene070570:CDS | 30.0% | |
| TTTAATTCTTCAACCACTCT+TGG | + | chr5.3:28418817-28418836 | None:intergenic | 30.0% | |
| TTTATGATCATGAACATCGA+AGG | + | chr5.3:28417972-28417991 | None:intergenic | 30.0% | |
| ! | CTGATGAAGATGATTTTGAA+TGG | - | chr5.3:28418665-28418684 | MS.gene070570:intron | 30.0% |
| ! | GAAACTCTTTGTATGCATTT+TGG | + | chr5.3:28418141-28418160 | None:intergenic | 30.0% |
| ! | GATTTGGAATTGGTATATGT+TGG | - | chr5.3:28419804-28419823 | MS.gene070570:intron | 30.0% |
| ! | GCATGAAACCTGATTTTTAA+GGG | - | chr5.3:28421620-28421639 | MS.gene070570:CDS | 30.0% |
| ! | GGTTATAAACACTTTCAAGT+TGG | + | chr5.3:28420583-28420602 | None:intergenic | 30.0% |
| ! | TCATTTTCCTATGAGTTACT+TGG | - | chr5.3:28418391-28418410 | MS.gene070570:intron | 30.0% |
| ! | TGCATGAAACCTGATTTTTA+AGG | - | chr5.3:28421619-28421638 | MS.gene070570:CDS | 30.0% |
| ! | TGGAAATTTTCCTGATTTCA+AGG | - | chr5.3:28417217-28417236 | MS.gene070570:intron | 30.0% |
| ! | TGTTTTCACCCTTAAAAATC+AGG | + | chr5.3:28421631-28421650 | None:intergenic | 30.0% |
| !! | ACCGAATCAAATTTTTAAGC+AGG | - | chr5.3:28421900-28421919 | MS.gene070570:CDS | 30.0% |
| !! | AGATGCAATTTTAGTATGGT+GGG | - | chr5.3:28419264-28419283 | MS.gene070570:CDS | 30.0% |
| !! | GCTTAGATGCAATTTTAGTA+TGG | - | chr5.3:28419260-28419279 | MS.gene070570:CDS | 30.0% |
| !! | TAGATGCAATTTTAGTATGG+TGG | - | chr5.3:28419263-28419282 | MS.gene070570:CDS | 30.0% |
| !! | TCATGATGATGGTAAGAAAA+TGG | - | chr5.3:28417907-28417926 | MS.gene070570:intron | 30.0% |
| !! | TTACGAGTTTGGTGATTTTT+GGG | + | chr5.3:28420213-28420232 | None:intergenic | 30.0% |
| !! | TTCAAAATTTGGAGTTGATG+AGG | - | chr5.3:28418507-28418526 | MS.gene070570:intron | 30.0% |
| !! | TTTGTATGCATTTTGGGAAA+CGG | + | chr5.3:28418134-28418153 | None:intergenic | 30.0% |
| !!! | CTTTGAATTTTGTTTCTGTG+AGG | - | chr5.3:28416978-28416997 | MS.gene070570:CDS | 30.0% |
| !!! | GTGATCTTTGTTGATTTTCT+TGG | + | chr5.3:28419744-28419763 | None:intergenic | 30.0% |
| AAACTGAATCGCAATGTTGT+TGG | + | chr5.3:28418079-28418098 | None:intergenic | 35.0% | |
| AAATGACGTGTATATTAGGG+TGG | - | chr5.3:28420393-28420412 | MS.gene070570:CDS | 35.0% | |
| AACATAAGATTTCCCATGAG+AGG | + | chr5.3:28419839-28419858 | None:intergenic | 35.0% | |
| AATAATAGAGCATGCCATAG+GGG | - | chr5.3:28417625-28417644 | MS.gene070570:intron | 35.0% | |
| AATTCACCATCACAATCACT+TGG | - | chr5.3:28417191-28417210 | MS.gene070570:CDS | 35.0% | |
| ACAGAAGGATAAAAAGCTGA+AGG | - | chr5.3:28421709-28421728 | MS.gene070570:CDS | 35.0% | |
| ACCGATAATGTTGAGAAACA+TGG | - | chr5.3:28420239-28420258 | MS.gene070570:CDS | 35.0% | |
| AGAAAAAGAATCACCAAGAG+TGG | - | chr5.3:28418801-28418820 | MS.gene070570:intron | 35.0% | |
| AGAAATGGATCCTCACATTA+AGG | - | chr5.3:28418552-28418571 | MS.gene070570:intron | 35.0% | |
| AGATGAATCTGTTCAAGAAG+GGG | - | chr5.3:28417484-28417503 | MS.gene070570:intron | 35.0% | |
| AGCTTCACTTCAATCTTCAA+TGG | + | chr5.3:28418841-28418860 | None:intergenic | 35.0% | |
| AGGTATGAAGAAAAGTGAAG+AGG | - | chr5.3:28418624-28418643 | MS.gene070570:intron | 35.0% | |
| AGGTTTCATGCAAGAAAACA+TGG | + | chr5.3:28421611-28421630 | None:intergenic | 35.0% | |
| ATAGAGAATGAGCCATTTCA+AGG | - | chr5.3:28419969-28419988 | MS.gene070570:intron | 35.0% | |
| ATGAGAGATGAAGGAATAGA+AGG | - | chr5.3:28418448-28418467 | MS.gene070570:intron | 35.0% | |
| ATTAGAGTTATTCTCCCCTA+TGG | + | chr5.3:28417642-28417661 | None:intergenic | 35.0% | |
| CATTCGAATACAACTACAGA+AGG | - | chr5.3:28420925-28420944 | MS.gene070570:CDS | 35.0% | |
| CCCATATTCTCAATGTGTTA+AGG | - | chr5.3:28420419-28420438 | MS.gene070570:CDS | 35.0% | |
| CCTACAAATCAAGAGTAAAG+TGG | + | chr5.3:28419636-28419655 | None:intergenic | 35.0% | |
| CTAGTTCAAGTGGTTTAATC+TGG | - | chr5.3:28418344-28418363 | MS.gene070570:intron | 35.0% | |
| CTTCATGTTCCAGCTATTAA+AGG | - | chr5.3:28420044-28420063 | MS.gene070570:CDS | 35.0% | |
| GAAATAATAGAGCATGCCAT+AGG | - | chr5.3:28417623-28417642 | MS.gene070570:intron | 35.0% | |
| GAAATGGATCCTCACATTAA+GGG | - | chr5.3:28418553-28418572 | MS.gene070570:intron | 35.0% | |
| GAAGATGAATCTGTTCAAGA+AGG | - | chr5.3:28417482-28417501 | MS.gene070570:intron | 35.0% | |
| GAGATTAAGGTTCATGATGA+TGG | - | chr5.3:28417896-28417915 | MS.gene070570:intron | 35.0% | |
| GAGTGTGAAATACATGAAGA+GGG | - | chr5.3:28417443-28417462 | MS.gene070570:intron | 35.0% | |
| GTAGATTTGTCACTATCTCT+AGG | + | chr5.3:28419368-28419387 | None:intergenic | 35.0% | |
| TAAATCAGCATCTCAACTCA+AGG | + | chr5.3:28420697-28420716 | None:intergenic | 35.0% | |
| TATCAAACCATGCATGCATT+AGG | - | chr5.3:28418943-28418962 | MS.gene070570:CDS | 35.0% | |
| TCATACTCAGATTCTTCTTG+AGG | - | chr5.3:28417038-28417057 | MS.gene070570:CDS | 35.0% | |
| TCATGCAAGAAAACATGGTT+TGG | + | chr5.3:28421606-28421625 | None:intergenic | 35.0% | |
| TCTCATGGGAAATCTTATGT+TGG | - | chr5.3:28419838-28419857 | MS.gene070570:intron | 35.0% | |
| TCTTTCTCTGAATCAAGCTT+TGG | + | chr5.3:28418163-28418182 | None:intergenic | 35.0% | |
| TGAGTGTGAAATACATGAAG+AGG | - | chr5.3:28417442-28417461 | MS.gene070570:intron | 35.0% | |
| TGCAATTTCAAACCTTCTAG+TGG | - | chr5.3:28420901-28420920 | MS.gene070570:CDS | 35.0% | |
| TGTGAAAACAGAGATATACG+TGG | - | chr5.3:28417397-28417416 | MS.gene070570:intron | 35.0% | |
| TTGAAGAATTCAAGACAAGG+AGG | - | chr5.3:28418724-28418743 | MS.gene070570:intron | 35.0% | |
| TTTGCTACCAAGTAACTCAT+AGG | + | chr5.3:28418401-28418420 | None:intergenic | 35.0% | |
| ! | AAGAATCAATGCGTGTGTTT+TGG | - | chr5.3:28420801-28420820 | MS.gene070570:CDS | 35.0% |
| ! | ACTAGAAGGTTTGAAATTGC+AGG | + | chr5.3:28420902-28420921 | None:intergenic | 35.0% |
| ! | AGAATCAATGCGTGTGTTTT+GGG | - | chr5.3:28420802-28420821 | MS.gene070570:CDS | 35.0% |
| ! | CTAGAAGGTTTGAAATTGCA+GGG | + | chr5.3:28420901-28420920 | None:intergenic | 35.0% |
| ! | GAGTTACTTGGTAGCAAAAA+TGG | - | chr5.3:28418403-28418422 | MS.gene070570:intron | 35.0% |
| ! | GATTATTCCATTTGAGATGG+TGG | + | chr5.3:28419706-28419725 | None:intergenic | 35.0% |
| ! | GTTTTCAAACCCTTAATGTG+AGG | + | chr5.3:28418565-28418584 | None:intergenic | 35.0% |
| ! | TCAGAATCATCTAGTTCAAG+TGG | - | chr5.3:28418334-28418353 | MS.gene070570:intron | 35.0% |
| ! | TCTAAGGTCATGTGTTTAAG+TGG | - | chr5.3:28421056-28421075 | MS.gene070570:CDS | 35.0% |
| ! | TGGATTGCGATTGATTTCAA+GGG | - | chr5.3:28421820-28421839 | MS.gene070570:intron | 35.0% |
| ! | TTGGATTGCGATTGATTTCA+AGG | - | chr5.3:28421819-28421838 | MS.gene070570:intron | 35.0% |
| !! | AACAGAGTACTCTGTTTTCA+TGG | - | chr5.3:28417697-28417716 | MS.gene070570:intron | 35.0% |
| !! | AACAGAGTTCTCTGTTTTGA+AGG | - | chr5.3:28417346-28417365 | MS.gene070570:intron | 35.0% |
| !! | CCACTTTACTCTTGATTTGT+AGG | - | chr5.3:28419633-28419652 | MS.gene070570:intron | 35.0% |
| !! | GTTACGAGTTTGGTGATTTT+TGG | + | chr5.3:28420214-28420233 | None:intergenic | 35.0% |
| !!! | CGTGGAGAGTATTTTATCAA+AGG | - | chr5.3:28417415-28417434 | MS.gene070570:intron | 35.0% |
| !!! | GGAGAGTATTTTATCAAAGG+TGG | - | chr5.3:28417418-28417437 | MS.gene070570:intron | 35.0% |
| !!! | GGGACTCTGTTTTTGTAAAT+AGG | - | chr5.3:28418008-28418027 | MS.gene070570:CDS | 35.0% |
| AGAGCTATGCAGAGAAAATG+AGG | - | chr5.3:28418902-28418921 | MS.gene070570:CDS | 40.0% | |
| AGATGAAGGAATAGAAGGTG+TGG | - | chr5.3:28418453-28418472 | MS.gene070570:intron | 40.0% | |
| AGATGATAGTAAAGGAGGTG+AGG | - | chr5.3:28420739-28420758 | MS.gene070570:CDS | 40.0% | |
| ATGACTCACAAAGGTCTCAT+AGG | - | chr5.3:28419892-28419911 | MS.gene070570:intron | 40.0% | |
| CATAGGTATAACCATGTTGC+TGG | - | chr5.3:28419909-28419928 | MS.gene070570:intron | 40.0% | |
| CCAAAATCCACCATCTCAAA+TGG | - | chr5.3:28419696-28419715 | MS.gene070570:intron | 40.0% | |
| CCAACTTGATCATGAGCAAT+TGG | - | chr5.3:28421787-28421806 | MS.gene070570:intron | 40.0% | |
| CCAATTGCTCATGATCAAGT+TGG | + | chr5.3:28421790-28421809 | None:intergenic | 40.0% | |
| CTCAGATTCTTCTTGAGGTT+TGG | - | chr5.3:28417043-28417062 | MS.gene070570:CDS | 40.0% | |
| CTGAAGGACATAGTAAGAAC+TGG | - | chr5.3:28421725-28421744 | MS.gene070570:CDS | 40.0% | |
| CTTGTGCTACATGTTACAGA+AGG | - | chr5.3:28421694-28421713 | MS.gene070570:CDS | 40.0% | |
| GCAAAAAAGAAGGTTCCACA+TGG | + | chr5.3:28421934-28421953 | None:intergenic | 40.0% | |
| GCAATGTGCTAGAGTTACAA+GGG | + | chr5.3:28421220-28421239 | None:intergenic | 40.0% | |
| GTATGTAAAGCTTTACGCGT+AGG | + | chr5.3:28420604-28420623 | None:intergenic | 40.0% | |
| GTATTCGAATGTCCACTAGA+AGG | + | chr5.3:28420916-28420935 | None:intergenic | 40.0% | |
| GTCTCTGATGTTACTGAAGA+TGG | - | chr5.3:28417824-28417843 | MS.gene070570:intron | 40.0% | |
| GTTAGTCCATTGTTGCTCTT+AGG | - | chr5.3:28420494-28420513 | MS.gene070570:CDS | 40.0% | |
| TAATAGCTGGAACATGAAGC+AGG | + | chr5.3:28420043-28420062 | None:intergenic | 40.0% | |
| TGCAATGTGCTAGAGTTACA+AGG | + | chr5.3:28421221-28421240 | None:intergenic | 40.0% | |
| TGGACAAATTTGCCTCTCAT+GGG | - | chr5.3:28419824-28419843 | MS.gene070570:intron | 40.0% | |
| TTGGACAAATTTGCCTCTCA+TGG | - | chr5.3:28419823-28419842 | MS.gene070570:intron | 40.0% | |
| ! | ATGGGAGCATGAAGAAATAG+TGG | - | chr5.3:28418684-28418703 | MS.gene070570:intron | 40.0% |
| ! | ATTGCGATTGATTTCAAGGG+TGG | - | chr5.3:28421823-28421842 | MS.gene070570:intron | 40.0% |
| ! | TCGGTGTTTAGTTACGAGTT+TGG | + | chr5.3:28420224-28420243 | None:intergenic | 40.0% |
| !! | AACAGAGTGCTCTGTTTTCT+TGG | - | chr5.3:28417304-28417323 | MS.gene070570:intron | 40.0% |
| !! | CAACAATGGACTAACGATCA+CGG | + | chr5.3:28420489-28420508 | None:intergenic | 40.0% |
| !! | GGCTCTGATTTTCATGAAGA+TGG | - | chr5.3:28417767-28417786 | MS.gene070570:intron | 40.0% |
| !!! | CCATTTGAGATGGTGGATTT+TGG | + | chr5.3:28419699-28419718 | None:intergenic | 40.0% |
| AAGCAGGAAGATTGTCCATG+TGG | - | chr5.3:28421916-28421935 | MS.gene070570:CDS | 45.0% | |
| AGGATCCAATTGCAAGTGGA+AGG | - | chr5.3:28420762-28420781 | MS.gene070570:CDS | 45.0% | |
| ATCCTTGGTCCACCTTGAAA+TGG | + | chr5.3:28419984-28420003 | None:intergenic | 45.0% | |
| CATTCAACCGATGTTCCACA+TGG | - | chr5.3:28418223-28418242 | MS.gene070570:intron | 45.0% | |
| CCATCACCAAGTGATTGTGA+TGG | + | chr5.3:28417200-28417219 | None:intergenic | 45.0% | |
| CTCAAAGCCATGTGGAACAT+CGG | + | chr5.3:28418233-28418252 | None:intergenic | 45.0% | |
| CTGGAGCAACAGCAACAAAA+TGG | - | chr5.3:28418363-28418382 | MS.gene070570:intron | 45.0% | |
| GAGAATGAGCCATTTCAAGG+TGG | - | chr5.3:28419972-28419991 | MS.gene070570:intron | 45.0% | |
| GAGCAATTGGTTGCTCAAGT+TGG | - | chr5.3:28421800-28421819 | MS.gene070570:intron | 45.0% | |
| GTTCTCACCTAATGCATGCA+TGG | + | chr5.3:28418953-28418972 | None:intergenic | 45.0% | |
| GTTGAAACTCACCAGCAACA+TGG | + | chr5.3:28419923-28419942 | None:intergenic | 45.0% | |
| GTTGGGTGCGAGATGAATAA+TGG | + | chr5.3:28419290-28419309 | None:intergenic | 45.0% | |
| TGACGTGTATATTAGGGTGG+TGG | - | chr5.3:28420396-28420415 | MS.gene070570:CDS | 45.0% | |
| TGATAGTAAAGGAGGTGAGG+AGG | - | chr5.3:28420742-28420761 | MS.gene070570:CDS | 45.0% | |
| TGCAACCTTCCACTTGCAAT+TGG | + | chr5.3:28420770-28420789 | None:intergenic | 45.0% | |
| TGGGAAACGGTTGAAACATC+AGG | + | chr5.3:28418121-28418140 | None:intergenic | 45.0% | |
| ! | CCATCACAATCACTTGGTGA+TGG | - | chr5.3:28417197-28417216 | MS.gene070570:CDS | 45.0% |
| !! | CATGATCAAGTTGGTCCTCA+TGG | + | chr5.3:28421781-28421800 | None:intergenic | 45.0% |
| AGCCATTTCAAGGTGGACCA+AGG | - | chr5.3:28419979-28419998 | MS.gene070570:CDS | 50.0% | |
| GAGGAGGATCCAATTGCAAG+TGG | - | chr5.3:28420758-28420777 | MS.gene070570:CDS | 50.0% | |
| ! | GTTGGTCCTCATGGTGCTTT+TGG | + | chr5.3:28421772-28421791 | None:intergenic | 50.0% |
| ! | TTTGAGAGCGAGGTGTTTGG+TGG | - | chr5.3:28418247-28418266 | MS.gene070570:intron | 50.0% |
| !! | GACGTTCCAAAAGCACCATG+AGG | - | chr5.3:28421763-28421782 | MS.gene070570:CDS | 50.0% |
| ACCTCGCTCTCAAAGCCATG+TGG | + | chr5.3:28418241-28418260 | None:intergenic | 55.0% | |
| GGGGAGCCTAAGAGCAACAA+TGG | + | chr5.3:28420503-28420522 | None:intergenic | 55.0% | |
| !! | GGCTTTGAGAGCGAGGTGTT+TGG | - | chr5.3:28418244-28418263 | MS.gene070570:intron | 55.0% |
| !! | TCCACATGGCTTTGAGAGCG+AGG | - | chr5.3:28418237-28418256 | MS.gene070570:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 28416974 | 28421967 | 28416974 | ID=MS.gene070570 |
| chr5.3 | mRNA | 28416974 | 28421967 | 28416974 | ID=MS.gene070570.t1;Parent=MS.gene070570 |
| chr5.3 | exon | 28421882 | 28421967 | 28421882 | ID=MS.gene070570.t1.exon1;Parent=MS.gene070570.t1 |
| chr5.3 | CDS | 28421882 | 28421967 | 28421882 | ID=cds.MS.gene070570.t1;Parent=MS.gene070570.t1 |
| chr5.3 | exon | 28419977 | 28421787 | 28419977 | ID=MS.gene070570.t1.exon2;Parent=MS.gene070570.t1 |
| chr5.3 | CDS | 28419977 | 28421787 | 28419977 | ID=cds.MS.gene070570.t1;Parent=MS.gene070570.t1 |
| chr5.3 | exon | 28418876 | 28419286 | 28418876 | ID=MS.gene070570.t1.exon3;Parent=MS.gene070570.t1 |
| chr5.3 | CDS | 28418876 | 28419286 | 28418876 | ID=cds.MS.gene070570.t1;Parent=MS.gene070570.t1 |
| chr5.3 | exon | 28417995 | 28418200 | 28417995 | ID=MS.gene070570.t1.exon4;Parent=MS.gene070570.t1 |
| chr5.3 | CDS | 28417995 | 28418200 | 28417995 | ID=cds.MS.gene070570.t1;Parent=MS.gene070570.t1 |
| chr5.3 | exon | 28416974 | 28417228 | 28416974 | ID=MS.gene070570.t1.exon5;Parent=MS.gene070570.t1 |
| chr5.3 | CDS | 28416974 | 28417228 | 28416974 | ID=cds.MS.gene070570.t1;Parent=MS.gene070570.t1 |
| Gene Sequence |
| Protein sequence |
