AlfalfaGEDB | MS.gene070595

M. sativa cultivar XinJiangDaYe / MS.gene070595

KEGG: K01166
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0033897 GO:0097159 GO:0140098 GO:1901363
PFAM: PF00445.21

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070595.t1	XP_003613797.1	93.2	222	15	0	1	222	1	222	3.00E-118	434.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070595.t1	P42815	59.8	214	85	1	6	219	1	213	1.4e-76	287.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070595.t1	G7KFA9	93.2	222	15	0	1	222	1	222	2.1e-118	434.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049260	MS.gene070595	0.819352	1.22E-52	-1.69E-46
MS.gene050206	MS.gene070595	0.807644	4.57E-50	-1.69E-46
MS.gene050584	MS.gene070595	0.805426	1.34E-49	-1.69E-46
MS.gene050587	MS.gene070595	0.803249	3.81E-49	-1.69E-46
MS.gene051626	MS.gene070595	0.801147	1.03E-48	-1.69E-46
MS.gene051789	MS.gene070595	0.838492	2.79E-57	-1.69E-46
MS.gene052178	MS.gene070595	0.802011	6.87E-49	-1.69E-46
MS.gene053074	MS.gene070595	0.830701	2.53E-55	-1.69E-46
MS.gene053204	MS.gene070595	0.851861	6.73E-61	-1.69E-46
MS.gene054010	MS.gene070595	0.807139	5.85E-50	-1.69E-46
MS.gene054011	MS.gene070595	0.832737	7.97E-56	-1.69E-46
MS.gene054012	MS.gene070595	0.816192	6.28E-52	-1.69E-46
MS.gene054013	MS.gene070595	0.81722	3.69E-52	-1.69E-46
MS.gene054214	MS.gene070595	0.805959	1.04E-49	-1.69E-46
MS.gene05456	MS.gene070595	0.830668	2.58E-55	-1.69E-46
MS.gene054596	MS.gene070595	0.830818	2.37E-55	-1.69E-46
MS.gene055207	MS.gene070595	0.801834	7.47E-49	-1.69E-46
MS.gene055604	MS.gene070595	0.831588	1.53E-55	-1.69E-46
MS.gene056069	MS.gene070595	-0.802406	5.70E-49	-1.69E-46
MS.gene059006	MS.gene070595	0.832789	7.74E-56	-1.69E-46
MS.gene059228	MS.gene070595	0.827133	1.85E-54	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070595.t1	MTR_5g041040	93.243	222	15	0	1	222	1	222	8.53e-148	410
MS.gene070595.t1	MTR_5g041010	72.727	220	59	1	1	220	1	219	9.41e-121	342
MS.gene070595.t1	MTR_5g041080	73.756	221	57	1	1	220	1	221	1.78e-118	337
MS.gene070595.t1	MTR_5g041095	70.270	222	64	2	1	221	1	221	1.04e-103	299
MS.gene070595.t1	MTR_5g040940	61.421	197	76	0	25	221	25	221	2.83e-93	273
MS.gene070595.t1	MTR_5g040960	59.174	218	86	3	7	221	6	223	2.35e-91	268
MS.gene070595.t1	MTR_3g030660	35.000	200	116	10	28	222	79	269	7.40e-26	101
MS.gene070595.t1	MTR_0129s0080	31.507	219	135	8	1	212	1	211	1.01e-25	100
MS.gene070595.t1	MTR_3g030640	35.500	200	115	10	28	222	74	264	1.14e-25	100
MS.gene070595.t1	MTR_8g028080	36.458	192	98	6	26	194	41	231	2.27e-24	97.8
MS.gene070595.t1	MTR_6g071425	34.211	190	115	7	28	211	78	263	4.10e-22	91.7
MS.gene070595.t1	MTR_2g021750	33.333	180	109	7	34	212	163	332	6.43e-21	89.7
MS.gene070595.t1	MTR_2g021830	31.443	194	116	7	23	214	1	179	2.46e-20	85.1
MS.gene070595.t1	MTR_5g086410	30.645	186	120	7	29	212	21	199	8.58e-20	84.3
MS.gene070595.t1	MTR_6g071505	33.505	194	113	9	27	213	70	254	6.51e-18	80.1
MS.gene070595.t1	MTR_5g086770	31.847	157	96	4	57	211	60	207	9.62e-18	79.0
MS.gene070595.t1	MTR_2g104370	33.088	136	80	4	86	211	52	186	1.55e-17	77.8
MS.gene070595.t1	MTR_4g057825	30.556	180	107	7	27	204	20	183	4.58e-17	77.0
MS.gene070595.t1	MTR_6g090200	26.697	221	139	9	3	220	1	201	1.82e-16	75.1
MS.gene070595.t1	MTR_2g021910	30.052	193	118	8	12	202	228	405	2.07e-15	75.1
MS.gene070595.t1	MTR_2g021910	28.922	204	129	9	21	222	534	723	4.77e-15	73.9
MS.gene070595.t1	MTR_1g048200	27.451	204	119	9	28	212	104	297	3.99e-15	73.2
MS.gene070595.t1	MTR_0002s1200	29.630	189	119	6	28	212	104	282	1.73e-13	68.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070595.t1	AT1G26820	58.986	217	88	1	6	222	1	216	2.60e-99	288
MS.gene070595.t1	AT1G14220	57.944	214	89	1	6	219	7	219	1.93e-95	278
MS.gene070595.t1	AT2G02990	53.636	220	102	0	3	222	5	224	4.24e-89	262
MS.gene070595.t1	AT1G14210	48.387	217	107	3	9	221	6	221	4.10e-70	214
MS.gene070595.t1	AT2G39780	38.071	197	108	6	24	207	28	223	2.10e-33	121
MS.gene070595.t1	AT2G39780	31.633	196	90	6	24	207	28	191	6.88e-19	82.0

Find 0 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTTAATTGCATTGAATTTC+AGG	+	37942:6330-6349	MS.gene070595:intron	20.0%
!!	TATCAAAATCTTGAACAAAA+AGG	-	37942:5381-5400	MS.gene070595:intergenic	20.0%
!!	TTTAATTGCATTGAATTTCA+GGG	+	37942:6331-6350	MS.gene070595:intron	20.0%
!!!	ACTTTTAATATTACAGTTTG+AGG	-	37942:5716-5735	MS.gene070595:intergenic	20.0%
!!!	CTTTTAATATTACAGTTTGA+GGG	-	37942:5715-5734	MS.gene070595:intergenic	20.0%
!	AAGTGTCTTTGATAAATCTA+AGG	+	37942:5732-5751	MS.gene070595:CDS	25.0%
!	GTGGAGTAAAATTTATTATC+TGG	-	37942:6363-6382	MS.gene070595:intergenic	25.0%
!	GTTACATAAGTAATCATCAA+AGG	-	37942:6080-6099	MS.gene070595:intergenic	25.0%
!	TTAAGGACTTGGAAAATAAT+TGG	+	37942:5869-5888	MS.gene070595:CDS	25.0%
!!	GATAATAAATTTTACTCCAC+AGG	+	37942:6363-6382	MS.gene070595:CDS	25.0%
!!	TTTCTTCTATTTTATTCAGC+AGG	+	37942:5445-5464	MS.gene070595:CDS	25.0%
!!!	TTAATTTGTTAATGATGCAG+TGG	+	37942:5578-5597	MS.gene070595:intron	25.0%
	ACATGTAAACTTGATAAAGC+TGG	-	37942:6467-6486	MS.gene070594:intergenic	30.0%
	AGTGAAATACCATTTCTACT+AGG	-	37942:5910-5929	MS.gene070595:intergenic	30.0%
	ATAAACAACATACACTGACA+CGG	+	37942:6149-6168	MS.gene070595:intron	30.0%
	CTCTATTACATTCTATTCCT+GGG	-	37942:6428-6447	MS.gene070595:intergenic	30.0%
	GTAGAAATGGTATTTCACTA+TGG	+	37942:5911-5930	MS.gene070595:CDS	30.0%
	GTGAAATACCATTTCTACTA+GGG	-	37942:5909-5928	MS.gene070595:intergenic	30.0%
	TAGTGTCGTGTCTAATATAT+GGG	-	37942:6122-6141	MS.gene070595:intergenic	30.0%
	TATTGTTACCTGCATTCTTA+AGG	-	37942:6044-6063	MS.gene070595:intergenic	30.0%
	TCTATTACATTCTATTCCTG+GGG	-	37942:6427-6446	MS.gene070595:intergenic	30.0%
	TCTCTATTACATTCTATTCC+TGG	-	37942:6429-6448	MS.gene070595:intergenic	30.0%
	TTAGTGTCGTGTCTAATATA+TGG	-	37942:6123-6142	MS.gene070595:intergenic	30.0%
	TTATCAAGTTTACATGTGTG+CGG	+	37942:6470-6489	MS.gene070595:CDS	30.0%
!	CATTTTAGATGCTATACAAC+AGG	+	37942:6389-6408	MS.gene070595:CDS	30.0%
!	TATTTTCCAAGTCCTTAATG+AGG	-	37942:5867-5886	MS.gene070595:intergenic	30.0%
!!	TTTGAATCTAAAGTGTTGAG+AGG	+	37942:6283-6302	MS.gene070595:intron	30.0%
	AATCAAAATCCTGAGCAGAA+AGG	-	37942:5427-5446	MS.gene070594:intergenic	35.0%
	AGAATGCAGGTAACAATACA+TGG	+	37942:6046-6065	MS.gene070595:intron	35.0%
	ATAGATCTCAGACCTCATTA+AGG	+	37942:5852-5871	MS.gene070595:intron	35.0%
	CATTCTTAAGGATCTGAAGA+AGG	-	37942:6032-6051	MS.gene070595:intergenic	35.0%
	CGTGTCTAATATATGGGTAT+AGG	-	37942:6116-6135	MS.gene070595:intergenic	35.0%
	GATGATCCATCATTGAAGTT+AGG	-	37942:5691-5710	MS.gene070595:intergenic	35.0%
	GCAATGGTAAAATCTGATGT+CGG	-	37942:5658-5677	MS.gene070595:intergenic	35.0%
	TCACATGAATGGATGAAACA+TGG	+	37942:5934-5953	MS.gene070595:CDS	35.0%
	TTTCACTATGGTCACATGAA+TGG	+	37942:5923-5942	MS.gene070595:CDS	35.0%
!	ACATCAGATTTTACCATTGC+TGG	+	37942:5658-5677	MS.gene070595:CDS	35.0%
!	AGCATCTAAAATGTTACCTG+TGG	-	37942:6382-6401	MS.gene070595:intergenic	35.0%
!	ATTTTACCATTGCTGGACTT+AGG	+	37942:5665-5684	MS.gene070595:CDS	35.0%
!!!	AAAATCTGATGTCGGTTTTC+CGG	-	37942:5650-5669	MS.gene070595:intergenic	35.0%
	ATGCTATACAACAGGCTACA+GGG	+	37942:6397-6416	MS.gene070595:CDS	40.0%
	CTTAGGCCTAACTTCAATGA+TGG	+	37942:5682-5701	MS.gene070595:CDS	40.0%
	CTTCAGATCCTTAAGAATGC+AGG	+	37942:6033-6052	MS.gene070595:CDS	40.0%
	TCAAAATTCATTGAGTGCCC+TGG	+	37942:6504-6523	MS.gene070595:CDS	40.0%
	ACATGTGTGCGGACATTTCT+GGG	+	37942:6481-6500	MS.gene070595:CDS	45.0%
	ACCATCAGACGAGACAAGTA+CGG	-	37942:6248-6267	MS.gene070595:intergenic	45.0%
	CTCAGACCTCATTAAGGACT+TGG	+	37942:5858-5877	MS.gene070595:CDS	45.0%
	GATGCTATACAACAGGCTAC+AGG	+	37942:6396-6415	MS.gene070595:CDS	45.0%
	TACATGTGTGCGGACATTTC+TGG	+	37942:6480-6499	MS.gene070595:CDS	45.0%
	TGTTCAAAGCCTTTCTGCTC+AGG	+	37942:5415-5434	MS.gene070595:CDS	45.0%
	TTGAGCTGCCCTAGTAGAAA+TGG	+	37942:5898-5917	MS.gene070595:CDS	45.0%
	TTGTTAATGATGCAGTGGCC+AGG	+	37942:5583-5602	MS.gene070595:intron	45.0%
	TTTGAGTCACAGATTGCTCC+TGG	-	37942:5604-5623	MS.gene070595:intergenic	45.0%
!!!	AGCTGCTGTTTTCCGAAAAC+CGG	+	37942:5628-5647	MS.gene070595:CDS	45.0%
!!!	GATGTCGGTTTTCCGGTTTT+CGG	-	37942:5643-5662	MS.gene070595:intergenic	45.0%
!!	TAAAAAAAAATGAATTTAAT+TGG	+	37942:5759-5778	MS.gene070595:intron	5.0%
	ACCGTACTTGTCTCGTCTGA+TGG	+	37942:6244-6263	MS.gene070595:intron	50.0%
	AGCTACCCATTGGAAGACCA+GGG	-	37942:6524-6543	MS.gene070595:intergenic	50.0%
	CTACTAGGGCAGCTCAAAGA+TGG	-	37942:5895-5914	MS.gene070595:intergenic	50.0%
	GTTAGGCCTAAGTCCAGCAA+TGG	-	37942:5674-5693	MS.gene070595:intergenic	50.0%
	CAGCTACCCATTGGAAGACC+AGG	-	37942:6525-6544	MS.gene070595:intergenic	55.0%
	GGTCTTCCAATGGGTAGCTG+TGG	+	37942:6525-6544	MS.gene070595:CDS	55.0%
	GGTGTCTGACTGACACATCG+TGG	-	37942:6227-6246	MS.gene070595:intergenic	55.0%
	TTAGCGCCACAGCTACCCAT+TGG	-	37942:6534-6553	MS.gene070595:intergenic	55.0%
!	GAGTGCCCTGGTCTTCCAAT+GGG	+	37942:6516-6535	MS.gene070595:CDS	55.0%
!	TGAGTGCCCTGGTCTTCCAA+TGG	+	37942:6515-6534	MS.gene070595:CDS	55.0%
!	CAGGCTACAGGGTATTCCCC+AGG	+	37942:6408-6427	MS.gene070595:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
37942	gene	5359	6554	5359	ID=MS.gene070595
37942	mRNA	5359	6554	5359	ID=MS.gene070595.t1;Parent=MS.gene070595
37942	exon	5359	5466	5359	ID=MS.gene070595.t1.exon1;Parent=MS.gene070595.t1
37942	CDS	5359	5466	5359	ID=cds.MS.gene070595.t1;Parent=MS.gene070595.t1
37942	exon	5598	5753	5598	ID=MS.gene070595.t1.exon2;Parent=MS.gene070595.t1
37942	CDS	5598	5753	5598	ID=cds.MS.gene070595.t1;Parent=MS.gene070595.t1
37942	exon	5856	6054	5856	ID=MS.gene070595.t1.exon3;Parent=MS.gene070595.t1
37942	CDS	5856	6054	5856	ID=cds.MS.gene070595.t1;Parent=MS.gene070595.t1
37942	exon	6352	6554	6352	ID=MS.gene070595.t1.exon4;Parent=MS.gene070595.t1
37942	CDS	6352	6554	6352	ID=cds.MS.gene070595.t1;Parent=MS.gene070595.t1

Gene Sequence

>MS.gene070595

ATGAAACTCAACAACATTTCCTTTTTGTTCAAGATTTTGATACTTCAATATCTTTCTGTTCAAAGCCTTTCTGCTCAGGATTTTGATTTCTTCTATTTTATTCAGCAGGTAATTAAATCATGAGTAGATAATCATGAATATAGTGTATTCATTTAATTCTTATAAAAAAAATAGTCGATTTATATTTACAGTTTATTCTGATTCTTCAGTATTACACTGTTAATTTGTTAATGATGCAGTGGCCAGGAGCAATCTGTGACTCAAAGCAGAGCTGCTGTTTTCCGAAAACCGGAAAACCGACATCAGATTTTACCATTGCTGGACTTAGGCCTAACTTCAATGATGGATCATCTCCCTCAAACTGTAATATTAAAAGTGTCTTTGATAAATCTAAGGTATTTAAAAAAAAATGAATTTAATTGGTCTTTATGATTTTAGTGTACTATTTCTCTGCTAAAAAACTCATCTATGAGTCATATTTAATTTTGTATATATAGATCTCAGACCTCATTAAGGACTTGGAAAATAATTGGCCATCTTTGAGCTGCCCTAGTAGAAATGGTATTTCACTATGGTCACATGAATGGATGAAACATGGTACATGTTCAGAATCTAAGCTTACTCAACATGACTACTTTCAAACAGCTATCAAACTCAAGAGAAAACTGAACCTTCTTCAGATCCTTAAGAATGCAGGTAACAATACATGGTTTTAAAGCCTTTGATGATTACTTATGTAACAATGACATATACACCTATACCCATATATTAGACACGACACTAACATGACATAAACAACATACACTGACACGGTACAGTGTACACAACACTGACACATGTGTCAAAGTTGTGTATGTGTCAGACACCACGATGTGTCAGTCAGACACCGTACTTGTCTCGTCTGATGGTGTCTGACTGACACGCTTTGAATCTAAAGTGTTGAGAGGTATATATTTGCAAAATTTCTAATCATTTAATTGCATTGAATTTCAGGGATTGAACCAGATAATAAATTTTACTCCACAGGTAACATTTTAGATGCTATACAACAGGCTACAGGGTATTCCCCAGGAATAGAATGTAATAGAGATTCAGCTCATAACAGCCAGCTTTATCAAGTTTACATGTGTGCGGACATTTCTGGGTCAAAATTCATTGAGTGCCCTGGTCTTCCAATGGGTAGCTGTGGCGCTAAT

Protein sequence

>MS.gene070595.t1

MKLNNISFLFKILILQYLSVQSLSAQDFDFFYFIQQWPGAICDSKQSCCFPKTGKPTSDFTIAGLRPNFNDGSSPSNCNIKSVFDKSKISDLIKDLENNWPSLSCPSRNGISLWSHEWMKHGTCSESKLTQHDYFQTAIKLKRKLNLLQILKNAGIEPDNKFYSTGNILDAIQQATGYSPGIECNRDSAHNSQLYQVYMCADISGSKFIECPGLPMGSCGAN