Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070756.t1 | RHN64690.1 | 93.2 | 381 | 22 | 2 | 1 | 380 | 1 | 378 | 2.90E-174 | 621.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070756.t1 | Q9LU68 | 44.1 | 392 | 139 | 15 | 48 | 380 | 49 | 419 | 1.7e-50 | 201.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070756.t1 | G7JUA6 | 93.2 | 381 | 22 | 2 | 1 | 380 | 1 | 378 | 2.1e-174 | 621.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene070756.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049257 | MS.gene070756 | 0.804945 | 1.69E-49 | -1.69E-46 |
| MS.gene050812 | MS.gene070756 | 0.867972 | 9.22E-66 | -1.69E-46 |
| MS.gene05081 | MS.gene070756 | 0.82726 | 1.73E-54 | -1.69E-46 |
| MS.gene051171 | MS.gene070756 | 0.819065 | 1.41E-52 | -1.69E-46 |
| MS.gene051242 | MS.gene070756 | 0.834208 | 3.42E-56 | -1.69E-46 |
| MS.gene051244 | MS.gene070756 | 0.843568 | 1.29E-58 | -1.69E-46 |
| MS.gene051525 | MS.gene070756 | 0.820579 | 6.37E-53 | -1.69E-46 |
| MS.gene052310 | MS.gene070756 | 0.819417 | 1.17E-52 | -1.69E-46 |
| MS.gene052322 | MS.gene070756 | 0.806464 | 8.12E-50 | -1.69E-46 |
| MS.gene052870 | MS.gene070756 | 0.816557 | 5.20E-52 | -1.69E-46 |
| MS.gene052872 | MS.gene070756 | 0.805988 | 1.02E-49 | -1.69E-46 |
| MS.gene053107 | MS.gene070756 | 0.810896 | 9.18E-51 | -1.69E-46 |
| MS.gene053330 | MS.gene070756 | 0.80408 | 2.56E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene070756 | 0.809083 | 2.25E-50 | -1.69E-46 |
| MS.gene055370 | MS.gene070756 | 0.810967 | 8.86E-51 | -1.69E-46 |
| MS.gene055412 | MS.gene070756 | 0.803955 | 2.72E-49 | -1.69E-46 |
| MS.gene055539 | MS.gene070756 | 0.811171 | 8.00E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene070756 | 0.825675 | 4.12E-54 | -1.69E-46 |
| MS.gene055971 | MS.gene070756 | 0.846403 | 2.22E-59 | -1.69E-46 |
| MS.gene056633 | MS.gene070756 | 0.804255 | 2.36E-49 | -1.69E-46 |
| MS.gene056664 | MS.gene070756 | 0.836647 | 8.28E-57 | -1.69E-46 |
| MS.gene056796 | MS.gene070756 | 0.898592 | 4.56E-77 | -1.69E-46 |
| MS.gene056877 | MS.gene070756 | 0.803784 | 2.96E-49 | -1.69E-46 |
| MS.gene057196 | MS.gene070756 | 0.824592 | 7.43E-54 | -1.69E-46 |
| MS.gene057332 | MS.gene070756 | 0.825126 | 5.56E-54 | -1.69E-46 |
| MS.gene057658 | MS.gene070756 | 0.803214 | 3.88E-49 | -1.69E-46 |
| MS.gene058233 | MS.gene070756 | 0.807292 | 5.43E-50 | -1.69E-46 |
| MS.gene058276 | MS.gene070756 | 0.849837 | 2.50E-60 | -1.69E-46 |
| MS.gene058444 | MS.gene070756 | 0.829269 | 5.66E-55 | -1.69E-46 |
| MS.gene058743 | MS.gene070756 | 0.814046 | 1.88E-51 | -1.69E-46 |
| MS.gene058746 | MS.gene070756 | 0.824427 | 8.12E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene070756 | 0.801427 | 9.05E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene070756 | 0.810337 | 1.21E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene070756 | 0.805028 | 1.63E-49 | -1.69E-46 |
| MS.gene060407 | MS.gene070756 | 0.825198 | 5.34E-54 | -1.69E-46 |
| MS.gene060557 | MS.gene070756 | 0.813257 | 2.81E-51 | -1.69E-46 |
| MS.gene061231 | MS.gene070756 | 0.836357 | 9.81E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070756.t1 | MTR_4g127420 | 97.638 | 381 | 5 | 2 | 1 | 380 | 1 | 378 | 0.0 | 750 |
| MS.gene070756.t1 | MTR_2g038010 | 39.590 | 293 | 135 | 10 | 36 | 310 | 43 | 311 | 4.58e-41 | 147 |
| MS.gene070756.t1 | MTR_5g072780 | 47.009 | 117 | 57 | 3 | 264 | 380 | 99 | 210 | 1.87e-21 | 92.0 |
| MS.gene070756.t1 | MTR_7g032240 | 35.220 | 159 | 65 | 5 | 257 | 380 | 190 | 345 | 2.18e-17 | 82.8 |
| MS.gene070756.t1 | MTR_1g110870 | 44.444 | 108 | 48 | 4 | 285 | 380 | 311 | 418 | 2.92e-16 | 80.1 |
| MS.gene070756.t1 | MTR_8g104190 | 43.137 | 102 | 46 | 1 | 291 | 380 | 293 | 394 | 4.54e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070756.t1 | AT5G57180 | 46.380 | 442 | 152 | 19 | 1 | 380 | 1 | 419 | 8.71e-77 | 243 |
| MS.gene070756.t1 | AT5G57180 | 46.380 | 442 | 152 | 19 | 1 | 380 | 1 | 419 | 2.06e-76 | 243 |
| MS.gene070756.t1 | AT4G25990 | 41.763 | 431 | 146 | 18 | 1 | 380 | 1 | 377 | 7.52e-67 | 216 |
| MS.gene070756.t1 | AT4G25990 | 41.763 | 431 | 146 | 18 | 1 | 380 | 1 | 377 | 1.22e-66 | 216 |
| MS.gene070756.t1 | AT4G25990 | 41.763 | 431 | 146 | 18 | 1 | 380 | 1 | 377 | 2.56e-66 | 216 |
| MS.gene070756.t1 | AT5G57180 | 41.878 | 394 | 146 | 19 | 1 | 331 | 1 | 374 | 8.89e-46 | 161 |
| MS.gene070756.t1 | AT5G57180 | 41.878 | 394 | 146 | 19 | 1 | 331 | 1 | 374 | 8.89e-46 | 161 |
| MS.gene070756.t1 | AT5G14370 | 45.794 | 107 | 37 | 4 | 290 | 380 | 229 | 330 | 1.92e-17 | 83.2 |
| MS.gene070756.t1 | AT1G25440 | 36.879 | 141 | 72 | 2 | 254 | 380 | 260 | 397 | 3.17e-17 | 83.2 |
| MS.gene070756.t1 | AT1G07050 | 50.000 | 92 | 39 | 2 | 289 | 380 | 103 | 187 | 1.25e-16 | 78.2 |
| MS.gene070756.t1 | AT1G07050 | 50.000 | 92 | 39 | 2 | 289 | 380 | 103 | 187 | 1.44e-16 | 77.8 |
| MS.gene070756.t1 | AT1G73870 | 45.370 | 108 | 45 | 3 | 287 | 380 | 274 | 381 | 5.48e-16 | 79.3 |
| MS.gene070756.t1 | AT1G68520 | 36.923 | 130 | 57 | 3 | 269 | 380 | 271 | 393 | 6.64e-15 | 76.3 |
| MS.gene070756.t1 | AT1G49130 | 42.857 | 91 | 37 | 2 | 293 | 380 | 229 | 307 | 1.91e-11 | 65.1 |
| MS.gene070756.t1 | AT1G49130 | 42.857 | 91 | 37 | 2 | 293 | 380 | 236 | 314 | 1.96e-11 | 65.1 |
Find 87 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACCGACACTGCATATTT+TGG | 0.094471 | 8.4:+7120957 | None:intergenic |
| TGACATGGTTTCACCGGTTT+TGG | 0.239666 | 8.4:+7121282 | None:intergenic |
| ATTGATCATACCTTCATTCT+TGG | 0.253571 | 8.4:+7119752 | None:intergenic |
| GATTTATTATTGTTATTGTT+GGG | 0.253877 | 8.4:+7121420 | None:intergenic |
| AGCTTCGTTGTAGGTTTGAT+TGG | 0.274583 | 8.4:+7121503 | None:intergenic |
| TCTCATCCATGGATTGGTTT+TGG | 0.279149 | 8.4:-7121093 | MS.gene070756:CDS |
| TGTCACAAATAGATTTGTTA+TGG | 0.306145 | 8.4:-7119898 | MS.gene070756:CDS |
| CAATAATAAATCCACCAAAT+TGG | 0.309576 | 8.4:-7121409 | MS.gene070756:CDS |
| ACATACATTAACATCGTTTC+CGG | 0.311561 | 8.4:+7120735 | None:intergenic |
| TTGGGATTGGAGAAGAGGTT+TGG | 0.329352 | 8.4:+7121456 | None:intergenic |
| GGATTTATTATTGTTATTGT+TGG | 0.348745 | 8.4:+7121419 | None:intergenic |
| GCCATGTTGATGAAGGAAAT+TGG | 0.353307 | 8.4:-7121017 | MS.gene070756:CDS |
| AATTGAATTACGACGGTGTT+CGG | 0.364551 | 8.4:-7120816 | MS.gene070756:CDS |
| GGGCTTGCCGTAAAGTAAAA+AGG | 0.371473 | 8.4:+7121320 | None:intergenic |
| GGGAAATTCGACTTCCGGTT+AGG | 0.378755 | 8.4:-7121069 | MS.gene070756:CDS |
| AGGAAATTGGTGGAATTTCC+CGG | 0.382166 | 8.4:-7121004 | MS.gene070756:CDS |
| AATCATCACCACCATGTTCA+TGG | 0.382343 | 8.4:-7121632 | MS.gene070756:CDS |
| AGAAAATCAGATATCAAGTT+AGG | 0.387014 | 8.4:-7119796 | MS.gene070756:CDS |
| TGGGATTGGAGAAGAGGTTT+GGG | 0.389394 | 8.4:+7121457 | None:intergenic |
| GTCACAAATAGATTTGTTAT+GGG | 0.395534 | 8.4:-7119897 | MS.gene070756:CDS |
| GAGTGTTGCAGCTTCGTTGT+AGG | 0.410073 | 8.4:+7121494 | None:intergenic |
| TCTTCTTCTCATCCATGGAT+TGG | 0.411520 | 8.4:-7121099 | MS.gene070756:CDS |
| TTTGGCTCCGACTGGAAATC+GGG | 0.427983 | 8.4:+7121300 | None:intergenic |
| TGAGATTGGGATTGGAGAAG+AGG | 0.428990 | 8.4:+7121451 | None:intergenic |
| GGTTTGGGTATGCAGTGTTA+AGG | 0.430567 | 8.4:+7121472 | None:intergenic |
| GAATGCAGAATTGAAAGAAA+TGG | 0.436941 | 8.4:-7120872 | MS.gene070756:CDS |
| TTGGCGGGAAATTCGACTTC+CGG | 0.439230 | 8.4:-7121074 | MS.gene070756:CDS |
| GCTTCGTTGTAGGTTTGATT+GGG | 0.439703 | 8.4:+7121504 | None:intergenic |
| TTTCCGGAAGCATCGGAGAC+AGG | 0.440046 | 8.4:+7120751 | None:intergenic |
| TTGTTATGGGAGAATGGAGG+AGG | 0.440896 | 8.4:-7119884 | MS.gene070756:CDS |
| CACCTCTCTGTAATCCTAAC+CGG | 0.443822 | 8.4:+7121055 | None:intergenic |
| ATAGATTTGTTATGGGAGAA+TGG | 0.448843 | 8.4:-7119890 | MS.gene070756:CDS |
| CATCGGCGAACGGCGTTCCT+CGG | 0.459344 | 8.4:+7120779 | None:intergenic |
| CACCATTGAACTAATCTCTC+CGG | 0.459584 | 8.4:+7121254 | None:intergenic |
| TGGGAGAATGGAGGAGGAAG+TGG | 0.459617 | 8.4:-7119878 | MS.gene070756:CDS |
| AGCCCTGTCTCCGATGCTTC+CGG | 0.466072 | 8.4:-7120754 | MS.gene070756:CDS |
| ACGTCTCTTCTTCTCATCCA+TGG | 0.467379 | 8.4:-7121104 | MS.gene070756:CDS |
| ACGACGGTGTTCGGAAAGCT+TGG | 0.468820 | 8.4:-7120807 | MS.gene070756:CDS |
| ATTTATTATTGTTATTGTTG+GGG | 0.476105 | 8.4:+7121421 | None:intergenic |
| TTTCCAGTCGGAGCCAAAAC+CGG | 0.481789 | 8.4:-7121295 | MS.gene070756:CDS |
| CGGTGGTAAGACGGCGGCGC+CGG | 0.496178 | 8.4:-7120941 | MS.gene070756:CDS |
| GGACTCTGACATGGTTTCAC+CGG | 0.498907 | 8.4:+7121276 | None:intergenic |
| AACATCGTTTCCGGAAGCAT+CGG | 0.505047 | 8.4:+7120744 | None:intergenic |
| ATGCAGTGTCGGTGGTAAGA+CGG | 0.515154 | 8.4:-7120950 | MS.gene070756:CDS |
| GATTCAGAGATTGTTGAAGA+AGG | 0.524561 | 8.4:+7121582 | None:intergenic |
| TCCCGGAGAGATTAGTTCAA+TGG | 0.528675 | 8.4:-7121256 | MS.gene070756:CDS |
| ACCAATTTCCTTCATCAACA+TGG | 0.530695 | 8.4:+7121016 | None:intergenic |
| GAATCGCCAAAGTTGAAAAG+TGG | 0.536005 | 8.4:-7120850 | MS.gene070756:CDS |
| AAAGAAGAAGGTTGTTGCGG+TGG | 0.538258 | 8.4:-7120902 | MS.gene070756:CDS |
| GCTCTTCGCCATGTTGATGA+AGG | 0.541149 | 8.4:-7121024 | MS.gene070756:CDS |
| ATCGGAGACAGGGCTGTCAT+CGG | 0.545065 | 8.4:+7120762 | None:intergenic |
| ACCATTGAACTAATCTCTCC+GGG | 0.545916 | 8.4:+7121255 | None:intergenic |
| AGAAGGAATTGATAGCATCA+TGG | 0.548899 | 8.4:-7121154 | MS.gene070756:CDS |
| GAAGGAATTGATAGCATCAT+GGG | 0.550516 | 8.4:-7121153 | MS.gene070756:CDS |
| TTCCCGCCAAAACCAATCCA+TGG | 0.558777 | 8.4:+7121087 | None:intergenic |
| CTCGACGAGGAAATTGAAGA+AGG | 0.561335 | 8.4:-7121171 | MS.gene070756:CDS |
| GACGTGTCCAATACTCTGAA+AGG | 0.567728 | 8.4:+7121348 | None:intergenic |
| CGGTTAGGATTACAGAGAGG+TGG | 0.569382 | 8.4:-7121054 | MS.gene070756:CDS |
| TTCTTTGTAACGCAGCACGC+TGG | 0.571082 | 8.4:+7119844 | None:intergenic |
| TTCCGGAAGCATCGGAGACA+GGG | 0.571094 | 8.4:+7120752 | None:intergenic |
| AGATCGACGGCCAAGAATGA+AGG | 0.572545 | 8.4:-7119762 | None:intergenic |
| GTGAAACCATGTCAGAGTCC+CGG | 0.575623 | 8.4:-7121273 | MS.gene070756:CDS |
| AATCAGATATCAAGTTAGGA+AGG | 0.579412 | 8.4:-7119792 | MS.gene070756:CDS |
| TAAGACGGCGGCGCCGGTGA+CGG | 0.581889 | 8.4:-7120935 | MS.gene070756:CDS |
| GGAACAGGAGGAAGAACCAT+CGG | 0.583201 | 8.4:-7121675 | MS.gene070756:CDS |
| GAACAGGAGGAAGAACCATC+GGG | 0.586253 | 8.4:-7121674 | MS.gene070756:CDS |
| ATCTCTCCGGGACTCTGACA+TGG | 0.592091 | 8.4:+7121267 | None:intergenic |
| AGGAGGAAGAACCATCGGGT+TGG | 0.598540 | 8.4:-7121670 | MS.gene070756:CDS |
| ACAGGGCTGTCATCGGCGAA+CGG | 0.603353 | 8.4:+7120769 | None:intergenic |
| CCCAAAATATGCAGTGTCGG+TGG | 0.613838 | 8.4:-7120958 | MS.gene070756:CDS |
| CATCATGGGAGGTAGAATTG+AGG | 0.620329 | 8.4:-7121139 | MS.gene070756:CDS |
| TCGCCCAAAATATGCAGTGT+CGG | 0.623873 | 8.4:-7120961 | MS.gene070756:CDS |
| GATTTGTTATGGGAGAATGG+AGG | 0.628311 | 8.4:-7119887 | MS.gene070756:CDS |
| GGAAGGTCAATGCAGATCGA+CGG | 0.632746 | 8.4:-7119775 | MS.gene070756:CDS |
| CGGCAAGCCCGATTTCCAGT+CGG | 0.636352 | 8.4:-7121307 | MS.gene070756:CDS |
| CGCGGAATCAATACTCGACG+AGG | 0.646026 | 8.4:-7121184 | MS.gene070756:CDS |
| TATATCTAAATCCAACCCGA+TGG | 0.646645 | 8.4:+7121659 | None:intergenic |
| CGGAAAGCTTGGTCTGACCG+AGG | 0.657705 | 8.4:-7120796 | MS.gene070756:CDS |
| TTTGTGGTGTAGATTGCAAG+CGG | 0.661097 | 8.4:+7121549 | None:intergenic |
| GATGTTCGACTCCATGAACA+TGG | 0.682341 | 8.4:+7121621 | None:intergenic |
| TTGTTGAAATTGAATTACGA+CGG | 0.684346 | 8.4:-7120823 | MS.gene070756:CDS |
| CAGTGTCGGTGGTAAGACGG+CGG | 0.687348 | 8.4:-7120947 | MS.gene070756:CDS |
| GGAATTGATAGCATCATGGG+AGG | 0.697923 | 8.4:-7121150 | MS.gene070756:CDS |
| ATGTTGATGAAGGAAATTGG+TGG | 0.707203 | 8.4:-7121014 | MS.gene070756:CDS |
| TTCCGGTTAGGATTACAGAG+AGG | 0.750478 | 8.4:-7121057 | MS.gene070756:CDS |
| AAATTGGTGGAATTTCCCGG+CGG | 0.816024 | 8.4:-7121001 | MS.gene070756:CDS |
| GTTCGACTCCATGAACATGG+TGG | 0.820791 | 8.4:+7121624 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTAAAGTAAAAAATGAA+TGG | + | chr8.4:7121074-7121093 | None:intergenic | 15.0% |
| !! | AAGTAAAGTAAAAAATGAAT+GGG | + | chr8.4:7121073-7121092 | None:intergenic | 15.0% |
| !! | ATTCTCTTACAATATTTAAA+TGG | - | chr8.4:7121136-7121155 | MS.gene070756:CDS | 15.0% |
| !! | TTCTCTTACAATATTTAAAT+GGG | - | chr8.4:7121137-7121156 | MS.gene070756:CDS | 15.0% |
| !!! | ATTTATTATTGTTATTGTTG+GGG | + | chr8.4:7120038-7120057 | None:intergenic | 15.0% |
| !!! | GATTTATTATTGTTATTGTT+GGG | + | chr8.4:7120039-7120058 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTGAAATAGAAAA+AGG | + | chr8.4:7121109-7121128 | None:intergenic | 15.0% |
| !! | AAAAGAAAAAAAAAAGAGAG+AGG | + | chr8.4:7120950-7120969 | None:intergenic | 20.0% |
| !! | AAAGAAAAAAAAAAGAGAGA+GGG | + | chr8.4:7120949-7120968 | None:intergenic | 20.0% |
| !! | AGTAAAGTAAAAAATGAATG+GGG | + | chr8.4:7121072-7121091 | None:intergenic | 20.0% |
| !! | AGTAGCATATGTTATAATTT+AGG | - | chr8.4:7121401-7121420 | MS.gene070756:CDS | 20.0% |
| !! | ATTTAATAGATAGTGAATGA+GGG | - | chr8.4:7121480-7121499 | MS.gene070756:CDS | 20.0% |
| !! | TATTTAATAGATAGTGAATG+AGG | - | chr8.4:7121479-7121498 | MS.gene070756:CDS | 20.0% |
| !!! | AAATTGTTGATTGATATTGT+GGG | - | chr8.4:7121522-7121541 | MS.gene070756:CDS | 20.0% |
| !!! | AAGTAAAAAGATATTTGTTG+TGG | - | chr8.4:7121190-7121209 | MS.gene070756:CDS | 20.0% |
| !!! | AATTAGGTAAATTTTGTCTT+GGG | - | chr8.4:7121340-7121359 | MS.gene070756:CDS | 20.0% |
| !!! | GGATTTATTATTGTTATTGT+TGG | + | chr8.4:7120040-7120059 | None:intergenic | 20.0% |
| !!! | TTAAGATTTTGTCTTGAATT+AGG | - | chr8.4:7121324-7121343 | MS.gene070756:CDS | 20.0% |
| !!! | TTTTTTTTTAAAGATTACCC+AGG | - | chr8.4:7120969-7120988 | MS.gene070756:CDS | 20.0% |
| ! | AGAAAATCAGATATCAAGTT+AGG | - | chr8.4:7121660-7121679 | MS.gene070756:CDS | 25.0% |
| ! | CAATAATAAATCCACCAAAT+TGG | - | chr8.4:7120047-7120066 | MS.gene070756:intron | 25.0% |
| ! | TTGTTGAAATTGAATTACGA+CGG | - | chr8.4:7120633-7120652 | MS.gene070756:intron | 25.0% |
| !! | AGCATTGAAATTGGTAATTA+AGG | + | chr8.4:7120803-7120822 | None:intergenic | 25.0% |
| !! | ATTTTTAATCACGTGGAATA+TGG | - | chr8.4:7120996-7121015 | MS.gene070756:CDS | 25.0% |
| !! | CAAATTGTTGATTGATATTG+TGG | - | chr8.4:7121521-7121540 | MS.gene070756:CDS | 25.0% |
| !! | GAATGTGTTACTCAATAAAA+AGG | - | chr8.4:7121164-7121183 | MS.gene070756:CDS | 25.0% |
| !! | GAATTAGGTAAATTTTGTCT+TGG | - | chr8.4:7121339-7121358 | MS.gene070756:CDS | 25.0% |
| !! | TCATCATCCTTTTTACTTTA+CGG | - | chr8.4:7120129-7120148 | MS.gene070756:intron | 25.0% |
| !! | TTTTTAATCACGTGGAATAT+GGG | - | chr8.4:7120997-7121016 | MS.gene070756:CDS | 25.0% |
| !!! | GTCACAAATAGATTTGTTAT+GGG | - | chr8.4:7121559-7121578 | MS.gene070756:CDS | 25.0% |
| !!! | TGTCACAAATAGATTTGTTA+TGG | - | chr8.4:7121558-7121577 | MS.gene070756:CDS | 25.0% |
| !!! | TTCATAAGCTTTTTCCAATT+TGG | + | chr8.4:7120064-7120083 | None:intergenic | 25.0% |
| AATCAGATATCAAGTTAGGA+AGG | - | chr8.4:7121664-7121683 | MS.gene070756:CDS | 30.0% | |
| AATTGACATATGAGGGATTA+AGG | + | chr8.4:7120848-7120867 | None:intergenic | 30.0% | |
| ACAAGTACGAAAACAAAAAC+AGG | + | chr8.4:7120775-7120794 | None:intergenic | 30.0% | |
| ACATACATTAACATCGTTTC+CGG | + | chr8.4:7120724-7120743 | None:intergenic | 30.0% | |
| CTTTGTGTAGTTTCAATAAC+CGG | - | chr8.4:7121287-7121306 | MS.gene070756:CDS | 30.0% | |
| GAATGCAGAATTGAAAGAAA+TGG | - | chr8.4:7120584-7120603 | MS.gene070756:intron | 30.0% | |
| TTGTCTTGGGTCAAAATTAT+GGG | - | chr8.4:7121353-7121372 | MS.gene070756:CDS | 30.0% | |
| TTTGTCTTGGGTCAAAATTA+TGG | - | chr8.4:7121352-7121371 | MS.gene070756:CDS | 30.0% | |
| ! | ATCTGATTTTCTTAGAGATG+AGG | + | chr8.4:7121652-7121671 | None:intergenic | 30.0% |
| ! | TCTTTTACCTTTCAGAGTAT+TGG | - | chr8.4:7120101-7120120 | MS.gene070756:intron | 30.0% |
| !! | AACAATCCACTTTTCAACTT+TGG | + | chr8.4:7120615-7120634 | None:intergenic | 30.0% |
| !! | ATAAGCTTTTTCCAATTTGG+TGG | + | chr8.4:7120061-7120080 | None:intergenic | 30.0% |
| !! | ATAGATTTGTTATGGGAGAA+TGG | - | chr8.4:7121566-7121585 | MS.gene070756:CDS | 30.0% |
| !! | GATTAAGGTACTGAAAATGT+CGG | + | chr8.4:7120833-7120852 | None:intergenic | 30.0% |
| !!! | AACAGGTGTTGAATTTTGAT+TGG | + | chr8.4:7120758-7120777 | None:intergenic | 30.0% |
| !!! | ACAGGTGTTGAATTTTGATT+GGG | + | chr8.4:7120757-7120776 | None:intergenic | 30.0% |
| AATTGAATTACGACGGTGTT+CGG | - | chr8.4:7120640-7120659 | MS.gene070756:intron | 35.0% | |
| ACCAATTTCCTTCATCAACA+TGG | + | chr8.4:7120443-7120462 | None:intergenic | 35.0% | |
| CTTAACATGAACATACAGTC+CGG | + | chr8.4:7121309-7121328 | None:intergenic | 35.0% | |
| GAAAAAGAAGAAGGTTGTTG+CGG | - | chr8.4:7120551-7120570 | MS.gene070756:intron | 35.0% | |
| GATTCAGAGATTGTTGAAGA+AGG | + | chr8.4:7119877-7119896 | None:intergenic | 35.0% | |
| GCTGTTCAATTGACATATGA+GGG | + | chr8.4:7120855-7120874 | None:intergenic | 35.0% | |
| GGAGAAGAAGAAAAAGAAGA+AGG | - | chr8.4:7120542-7120561 | MS.gene070756:intron | 35.0% | |
| TATATCTAAATCCAACCCGA+TGG | + | chr8.4:7119800-7119819 | None:intergenic | 35.0% | |
| TGCTGTTCAATTGACATATG+AGG | + | chr8.4:7120856-7120875 | None:intergenic | 35.0% | |
| ! | AGAAGGAATTGATAGCATCA+TGG | - | chr8.4:7120302-7120321 | MS.gene070756:intron | 35.0% |
| ! | ATGTTGATGAAGGAAATTGG+TGG | - | chr8.4:7120442-7120461 | MS.gene070756:intron | 35.0% |
| ! | ATTTTAAGCATATCAACCGC+CGG | + | chr8.4:7120474-7120493 | None:intergenic | 35.0% |
| ! | GAAGGAATTGATAGCATCAT+GGG | - | chr8.4:7120303-7120322 | MS.gene070756:intron | 35.0% |
| !! | GGAAAACAGAGCATTGAAAT+TGG | + | chr8.4:7120812-7120831 | None:intergenic | 35.0% |
| !! | TGATGATGATGATTTTGACG+CGG | - | chr8.4:7120254-7120273 | MS.gene070756:intron | 35.0% |
| !! | TTTGATTGGGTCGTTTTCTT+GGG | + | chr8.4:7119942-7119961 | None:intergenic | 35.0% |
| !!! | GTTTGTTTTGAGATTGGGAT+TGG | + | chr8.4:7120016-7120035 | None:intergenic | 35.0% |
| !!! | TTGGGGTTTGTTTTGAGATT+GGG | + | chr8.4:7120021-7120040 | None:intergenic | 35.0% |
| AATCATCACCACCATGTTCA+TGG | - | chr8.4:7119824-7119843 | MS.gene070756:CDS | 40.0% | |
| ACCATTGAACTAATCTCTCC+GGG | + | chr8.4:7120204-7120223 | None:intergenic | 40.0% | |
| ACGTGATTAAAAATCTCGCC+TGG | + | chr8.4:7120990-7121009 | None:intergenic | 40.0% | |
| AGCTTCGTTGTAGGTTTGAT+TGG | + | chr8.4:7119956-7119975 | None:intergenic | 40.0% | |
| AGGAAATTGGTGGAATTTCC+CGG | - | chr8.4:7120452-7120471 | MS.gene070756:intron | 40.0% | |
| CACCATTGAACTAATCTCTC+CGG | + | chr8.4:7120205-7120224 | None:intergenic | 40.0% | |
| CGTGATTAAAAATCTCGCCT+GGG | + | chr8.4:7120989-7121008 | None:intergenic | 40.0% | |
| GAATCGCCAAAGTTGAAAAG+TGG | - | chr8.4:7120606-7120625 | MS.gene070756:intron | 40.0% | |
| GCTTCGTTGTAGGTTTGATT+GGG | + | chr8.4:7119955-7119974 | None:intergenic | 40.0% | |
| TCTTCTTCTCATCCATGGAT+TGG | - | chr8.4:7120357-7120376 | MS.gene070756:intron | 40.0% | |
| TGATTGATATTGTGGGAGAC+AGG | - | chr8.4:7121529-7121548 | MS.gene070756:CDS | 40.0% | |
| TTTGTGGTGTAGATTGCAAG+CGG | + | chr8.4:7119910-7119929 | None:intergenic | 40.0% | |
| ! | AGGCGAGATTTTTAATCACG+TGG | - | chr8.4:7120989-7121008 | MS.gene070756:CDS | 40.0% |
| ! | GCCATGTTGATGAAGGAAAT+TGG | - | chr8.4:7120439-7120458 | MS.gene070756:intron | 40.0% |
| ! | TTTTAAGCATATCAACCGCC+GGG | + | chr8.4:7120473-7120492 | None:intergenic | 40.0% |
| ! | TTTTTCTTCTTCTCCGTCAC+CGG | + | chr8.4:7120537-7120556 | None:intergenic | 40.0% |
| !! | GATTTGTTATGGGAGAATGG+AGG | - | chr8.4:7121569-7121588 | MS.gene070756:CDS | 40.0% |
| !! | GTTTGATTGGGTCGTTTTCT+TGG | + | chr8.4:7119943-7119962 | None:intergenic | 40.0% |
| !! | TTGATTGGGTCGTTTTCTTG+GGG | + | chr8.4:7119941-7119960 | None:intergenic | 40.0% |
| !!! | GTTGGGGTTTGTTTTGAGAT+TGG | + | chr8.4:7120022-7120041 | None:intergenic | 40.0% |
| !!! | TCTCATCCATGGATTGGTTT+TGG | - | chr8.4:7120363-7120382 | MS.gene070756:intron | 40.0% |
| !!! | TCTTCGTGTTTTAGTGGAAC+AGG | - | chr8.4:7119766-7119785 | MS.gene070756:CDS | 40.0% |
| AAAGAAGAAGGTTGTTGCGG+TGG | - | chr8.4:7120554-7120573 | MS.gene070756:intron | 45.0% | |
| AAATTGGTGGAATTTCCCGG+CGG | - | chr8.4:7120455-7120474 | MS.gene070756:intron | 45.0% | |
| ACGTCTCTTCTTCTCATCCA+TGG | - | chr8.4:7120352-7120371 | MS.gene070756:intron | 45.0% | |
| CACCTCTCTGTAATCCTAAC+CGG | + | chr8.4:7120404-7120423 | None:intergenic | 45.0% | |
| CATCATGGGAGGTAGAATTG+AGG | - | chr8.4:7120317-7120336 | MS.gene070756:intron | 45.0% | |
| CTCGACGAGGAAATTGAAGA+AGG | - | chr8.4:7120285-7120304 | MS.gene070756:intron | 45.0% | |
| GACGTGTCCAATACTCTGAA+AGG | + | chr8.4:7120111-7120130 | None:intergenic | 45.0% | |
| GATGTTCGACTCCATGAACA+TGG | + | chr8.4:7119838-7119857 | None:intergenic | 45.0% | |
| GGGCTTGCCGTAAAGTAAAA+AGG | + | chr8.4:7120139-7120158 | None:intergenic | 45.0% | |
| GGTTTGGGTATGCAGTGTTA+AGG | + | chr8.4:7119987-7120006 | None:intergenic | 45.0% | |
| TCGCCCAAAATATGCAGTGT+CGG | - | chr8.4:7120495-7120514 | MS.gene070756:intron | 45.0% | |
| TGAGATTGGGATTGGAGAAG+AGG | + | chr8.4:7120008-7120027 | None:intergenic | 45.0% | |
| TGGGATTGGAGAAGAGGTTT+GGG | + | chr8.4:7120002-7120021 | None:intergenic | 45.0% | |
| TTCCGGTTAGGATTACAGAG+AGG | - | chr8.4:7120399-7120418 | MS.gene070756:intron | 45.0% | |
| TTGGGATTGGAGAAGAGGTT+TGG | + | chr8.4:7120003-7120022 | None:intergenic | 45.0% | |
| TTGTTATGGGAGAATGGAGG+AGG | - | chr8.4:7121572-7121591 | MS.gene070756:CDS | 45.0% | |
| ! | AACATCGTTTCCGGAAGCAT+CGG | + | chr8.4:7120715-7120734 | None:intergenic | 45.0% |
| ! | ACCACCGACACTGCATATTT+TGG | + | chr8.4:7120502-7120521 | None:intergenic | 45.0% |
| ! | CCACCGACACTGCATATTTT+GGG | + | chr8.4:7120501-7120520 | None:intergenic | 45.0% |
| ! | GGAATTGATAGCATCATGGG+AGG | - | chr8.4:7120306-7120325 | MS.gene070756:intron | 45.0% |
| ! | TCCCGGAGAGATTAGTTCAA+TGG | - | chr8.4:7120200-7120219 | MS.gene070756:intron | 45.0% |
| !!! | ATCCATGGATTGGTTTTGGC+GGG | - | chr8.4:7120367-7120386 | MS.gene070756:intron | 45.0% |
| !!! | CATCCATGGATTGGTTTTGG+CGG | - | chr8.4:7120366-7120385 | MS.gene070756:intron | 45.0% |
| !!! | TCGTGTTTTAGTGGAACAGG+AGG | - | chr8.4:7119769-7119788 | MS.gene070756:CDS | 45.0% |
| !!! | TGACATGGTTTCACCGGTTT+TGG | + | chr8.4:7120177-7120196 | None:intergenic | 45.0% |
| !!! | TTTTGGCTCCGACTGGAAAT+CGG | + | chr8.4:7120160-7120179 | None:intergenic | 45.0% |
| CGGTTAGGATTACAGAGAGG+TGG | - | chr8.4:7120402-7120421 | MS.gene070756:intron | 50.0% | |
| GAACAGGAGGAAGAACCATC+GGG | - | chr8.4:7119782-7119801 | MS.gene070756:CDS | 50.0% | |
| GATATTGTGGGAGACAGGCA+CGG | - | chr8.4:7121534-7121553 | MS.gene070756:CDS | 50.0% | |
| GGAACAGGAGGAAGAACCAT+CGG | - | chr8.4:7119781-7119800 | MS.gene070756:CDS | 50.0% | |
| GGAAGGTCAATGCAGATCGA+CGG | - | chr8.4:7121681-7121700 | MS.gene070756:CDS | 50.0% | |
| GGACTCTGACATGGTTTCAC+CGG | + | chr8.4:7120183-7120202 | None:intergenic | 50.0% | |
| GGGAAATTCGACTTCCGGTT+AGG | - | chr8.4:7120387-7120406 | MS.gene070756:intron | 50.0% | |
| GTGAAACCATGTCAGAGTCC+CGG | - | chr8.4:7120183-7120202 | MS.gene070756:intron | 50.0% | |
| GTTCGACTCCATGAACATGG+TGG | + | chr8.4:7119835-7119854 | None:intergenic | 50.0% | |
| TTCCCGCCAAAACCAATCCA+TGG | + | chr8.4:7120372-7120391 | None:intergenic | 50.0% | |
| TTCTTTGTAACGCAGCACGC+TGG | + | chr8.4:7121615-7121634 | None:intergenic | 50.0% | |
| TTGGCGGGAAATTCGACTTC+CGG | - | chr8.4:7120382-7120401 | MS.gene070756:intron | 50.0% | |
| TTTCCAGTCGGAGCCAAAAC+CGG | - | chr8.4:7120161-7120180 | MS.gene070756:intron | 50.0% | |
| ! | CCCAAAATATGCAGTGTCGG+TGG | - | chr8.4:7120498-7120517 | MS.gene070756:intron | 50.0% |
| ! | GAGTGTTGCAGCTTCGTTGT+AGG | + | chr8.4:7119965-7119984 | None:intergenic | 50.0% |
| ! | GCTCTTCGCCATGTTGATGA+AGG | - | chr8.4:7120432-7120451 | MS.gene070756:intron | 50.0% |
| ! | TTTGGCTCCGACTGGAAATC+GGG | + | chr8.4:7120159-7120178 | None:intergenic | 50.0% |
| !! | ATGCAGTGTCGGTGGTAAGA+CGG | - | chr8.4:7120506-7120525 | MS.gene070756:intron | 50.0% |
| !! | GGTCGTTTTCTTGGGGTTCT+GGG | + | chr8.4:7119934-7119953 | None:intergenic | 50.0% |
| !!! | TCTTGGGGTTCTGGGTTTTG+TGG | + | chr8.4:7119926-7119945 | None:intergenic | 50.0% |
| ACGACGGTGTTCGGAAAGCT+TGG | - | chr8.4:7120649-7120668 | MS.gene070756:intron | 55.0% | |
| AGGAGGAAGAACCATCGGGT+TGG | - | chr8.4:7119786-7119805 | MS.gene070756:CDS | 55.0% | |
| ATCGGAGACAGGGCTGTCAT+CGG | + | chr8.4:7120697-7120716 | None:intergenic | 55.0% | |
| ATCTCTCCGGGACTCTGACA+TGG | + | chr8.4:7120192-7120211 | None:intergenic | 55.0% | |
| CGCGGAATCAATACTCGACG+AGG | - | chr8.4:7120272-7120291 | MS.gene070756:intron | 55.0% | |
| TGGGAGAATGGAGGAGGAAG+TGG | - | chr8.4:7121578-7121597 | MS.gene070756:CDS | 55.0% | |
| !! | GGGTCGTTTTCTTGGGGTTC+TGG | + | chr8.4:7119935-7119954 | None:intergenic | 55.0% |
| !! | TTCCGGAAGCATCGGAGACA+GGG | + | chr8.4:7120707-7120726 | None:intergenic | 55.0% |
| !! | TTTCCGGAAGCATCGGAGAC+AGG | + | chr8.4:7120708-7120727 | None:intergenic | 55.0% |
| ACAGGGCTGTCATCGGCGAA+CGG | + | chr8.4:7120690-7120709 | None:intergenic | 60.0% | |
| AGCCCTGTCTCCGATGCTTC+CGG | - | chr8.4:7120702-7120721 | MS.gene070756:intron | 60.0% | |
| CGGAAAGCTTGGTCTGACCG+AGG | - | chr8.4:7120660-7120679 | MS.gene070756:intron | 60.0% | |
| CGGCAAGCCCGATTTCCAGT+CGG | - | chr8.4:7120149-7120168 | MS.gene070756:intron | 60.0% | |
| !! | CAGTGTCGGTGGTAAGACGG+CGG | - | chr8.4:7120509-7120528 | MS.gene070756:intron | 60.0% |
| !!! | TCACCGGTTTTGGCTCCGAC+TGG | + | chr8.4:7120167-7120186 | None:intergenic | 60.0% |
| CATCGGCGAACGGCGTTCCT+CGG | + | chr8.4:7120680-7120699 | None:intergenic | 65.0% | |
| !! | TAAGACGGCGGCGCCGGTGA+CGG | - | chr8.4:7120521-7120540 | MS.gene070756:intron | 70.0% |
| CGGTGGTAAGACGGCGGCGC+CGG | - | chr8.4:7120515-7120534 | MS.gene070756:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 7119763 | 7121715 | 7119763 | ID=MS.gene070756 |
| chr8.4 | mRNA | 7119763 | 7121715 | 7119763 | ID=MS.gene070756.t1;Parent=MS.gene070756 |
| chr8.4 | exon | 7120741 | 7121715 | 7120741 | ID=MS.gene070756.t1.exon1;Parent=MS.gene070756.t1 |
| chr8.4 | CDS | 7120741 | 7121715 | 7120741 | ID=cds.MS.gene070756.t1;Parent=MS.gene070756.t1 |
| chr8.4 | exon | 7119763 | 7119927 | 7119763 | ID=MS.gene070756.t1.exon2;Parent=MS.gene070756.t1 |
| chr8.4 | CDS | 7119763 | 7119927 | 7119763 | ID=cds.MS.gene070756.t1;Parent=MS.gene070756.t1 |
| Gene Sequence |
| Protein sequence |
