AlfalfaGEDB | MS.gene070915

M. sativa cultivar XinJiangDaYe / MS.gene070915

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070915.t1	XP_003614548.1	93	416	29	0	33	448	217	632	2.90E-221	777.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070915.t1	P0C5E2	55.1	379	158	3	39	406	241	618	4.1e-115	416.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070915.t1	G7JZG1	93.0	416	29	0	33	448	217	632	2.1e-221	777.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049993	MS.gene070915	0.811791	5.87E-51	-1.69E-46
MS.gene050640	MS.gene070915	0.811007	8.68E-51	-1.69E-46
MS.gene051525	MS.gene070915	0.84892	4.51E-60	-1.69E-46
MS.gene051568	MS.gene070915	0.822194	2.70E-53	-1.69E-46
MS.gene051588	MS.gene070915	0.833148	6.30E-56	-1.69E-46
MS.gene051980	MS.gene070915	0.807438	5.05E-50	-1.69E-46
MS.gene052011	MS.gene070915	-0.8546	1.11E-61	-1.69E-46
MS.gene052505	MS.gene070915	0.801002	1.11E-48	-1.69E-46
MS.gene052637	MS.gene070915	0.816463	5.46E-52	-1.69E-46
MS.gene053411	MS.gene070915	0.833514	5.11E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070915.t1	MTR_5g055310	93.029	416	29	0	33	448	217	632	0.0	799
MS.gene070915.t1	MTR_1g110130	65.242	351	109	4	65	413	236	575	2.94e-160	467
MS.gene070915.t1	MTR_1g110120	61.141	368	133	4	51	409	242	608	1.03e-149	441
MS.gene070915.t1	MTR_6g083020	48.954	478	191	8	9	434	181	657	4.18e-149	439
MS.gene070915.t1	MTR_7g082530	66.134	313	103	2	98	410	333	642	4.11e-148	437
MS.gene070915.t1	MTR_7g082530	66.134	313	103	2	98	410	333	642	4.29e-148	437
MS.gene070915.t1	MTR_1g110180	56.771	384	150	5	72	447	280	655	4.08e-147	435
MS.gene070915.t1	MTR_1g110110	60.734	354	100	6	105	437	296	631	4.76e-141	418
MS.gene070915.t1	MTR_6g044830	57.925	347	142	3	60	405	244	587	5.05e-139	412
MS.gene070915.t1	MTR_6g044740	62.914	302	110	2	105	405	308	608	5.82e-131	392

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070915.t1	AT1G18390	56.800	375	143	5	45	406	247	615	1.58e-142	422
MS.gene070915.t1	AT1G18390	66.102	295	99	1	112	406	328	621	2.47e-142	422
MS.gene070915.t1	AT1G25390	56.878	378	151	4	61	436	225	592	3.73e-142	421
MS.gene070915.t1	AT1G25390	56.878	378	151	4	61	436	225	592	3.73e-142	421
MS.gene070915.t1	AT5G38210	60.172	349	134	3	57	405	285	628	6.38e-137	409
MS.gene070915.t1	AT5G38210	60.172	349	134	3	57	405	291	634	9.72e-137	409
MS.gene070915.t1	AT5G38210	60.172	349	134	3	57	405	303	646	1.11e-136	409
MS.gene070915.t1	AT1G66880	63.667	300	106	2	106	405	326	622	2.69e-132	397
MS.gene070915.t1	AT1G66880	63.667	300	106	2	106	405	568	864	4.81e-129	395
MS.gene070915.t1	AT1G66880	63.667	300	106	2	106	405	947	1243	7.62e-126	395

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Find 106 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAGCTGTCTACTTT+GGG	0.413409	5.1:+43406688	MS.gene070915:CDS
AAAGCAGGAAGGATGAGGCA+GGG	0.662638	5.1:+43408075	MS.gene070915:CDS
AAAGGGATACCAGATTTCTG+TGG	0.698230	5.1:-43407401	None:intergenic
AAATGTGATAACTTCTGTTG+CGG	0.634864	5.1:+43407971	MS.gene070915:CDS
AAGAGCGATGTATATAGCTT+CGG	0.528311	5.1:+43407786	MS.gene070915:CDS
AAGATGATATTAGCTCAACA+AGG	0.722090	5.1:-43407815	None:intergenic
AATACAACAATCCCAGAAAA+TGG	0.294956	5.1:+43406672	MS.gene070915:CDS
AATTGAAAGCAGGAAGGATG+AGG	0.546223	5.1:+43408070	MS.gene070915:CDS
ACAGCACCGAGAGGAACACC+AGG	0.681457	5.1:+43407720	MS.gene070915:CDS
ACATAGCCTGGTGTTCCTCT+CGG	0.521344	5.1:-43407726	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTGATAACTTCTGTTG+CGG	+	chr5.1:43407971-43407990	MS.gene070915:CDS	30.0%
AAGATGATATTAGCTCAACA+AGG	-	chr5.1:43407818-43407837	None:intergenic	30.0%
AATACAACAATCCCAGAAAA+TGG	+	chr5.1:43406672-43406691	MS.gene070915:CDS	30.0%
AATCTCGTATAATACAACTG+AGG	-	chr5.1:43405948-43405967	None:intergenic	30.0%
AGTGAAGTAGATATCGTAAT+CGG	-	chr5.1:43405709-43405728	None:intergenic	30.0%
CAGTTAAGAACCAATTATCA+TGG	+	chr5.1:43406639-43406658	MS.gene070915:CDS	30.0%
GATATATGTAATCTGATGGA+TGG	-	chr5.1:43407112-43407131	None:intergenic	30.0%
GATTATTGTGTGACGAATAT+AGG	+	chr5.1:43407060-43407079	MS.gene070915:intron	30.0%
TATTGGAGAATCAAATCTTC+AGG	+	chr5.1:43406606-43406625	MS.gene070915:CDS	30.0%
TTAAAGTTGAATTGTGTCAC+TGG	+	chr5.1:43405897-43405916	MS.gene070915:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	43405652	43408208	43405652	ID=MS.gene070915
chr5.1	mRNA	43405652	43408208	43405652	ID=MS.gene070915.t1;Parent=MS.gene070915
chr5.1	exon	43405652	43405757	43405652	ID=MS.gene070915.t1.exon1;Parent=MS.gene070915.t1
chr5.1	CDS	43405652	43405757	43405652	ID=cds.MS.gene070915.t1;Parent=MS.gene070915.t1
chr5.1	exon	43406032	43406109	43406032	ID=MS.gene070915.t1.exon2;Parent=MS.gene070915.t1
chr5.1	CDS	43406032	43406109	43406032	ID=cds.MS.gene070915.t1;Parent=MS.gene070915.t1
chr5.1	exon	43406559	43406807	43406559	ID=MS.gene070915.t1.exon3;Parent=MS.gene070915.t1
chr5.1	CDS	43406559	43406807	43406559	ID=cds.MS.gene070915.t1;Parent=MS.gene070915.t1
chr5.1	exon	43407295	43408208	43407295	ID=MS.gene070915.t1.exon4;Parent=MS.gene070915.t1
chr5.1	CDS	43407295	43408208	43407295	ID=cds.MS.gene070915.t1;Parent=MS.gene070915.t1

Gene Sequence

>MS.gene070915

ATGGATGCAATCATAGCCCCGAGGCTGAGGACATGTTCAAATATAGAAACTGTTCCGATTACGATATCTACTTCACTTCAAGTTCAAAACCTGATTATTCTCCCATGTTCCCTATTTTATGTTTACCAAATGTCCCTTACCATTGTGAAGATTTATTATTTTCAATACTCGAAATTAAAGTAGATTTAAAGTTTTGTCAAGAGTGTTATAGTAAAGGAGACTTATGTCTTCCAGATCAGAAAACTTTAAAGTTGAATTGTGTCACTGGTAAATACATTAATCTGATGCTTATTCCTCAGTTGTATTATACGAGATTGTATGATTTAATATGTTGCAAATAATGTATACTCATTTGTTTTCTTCTGGTTTATGCTATGTAGGGCCAACACCTCAGATTGAACACCTTTCCAATATTCATACAAACAGAAAGGAACAGCATTTGAAGCTTGCAGTAATAGGTACTGTATTCTTTCCTTACCATCAAGCATTTACGTACCTAAATGTATGAAGTGTTGTCCTTATAATCTCTGATTGTAAATTTACAAACACAGTGTCTTGTTTGTTAGAGATTTTATTTTATTGACCAAATTGACTAACCGATGACACATCCGAATCCGATGTCTAAACAAACTAATGAACAAAAACAAATTTGATGACTAAAATTACAAACAAAAAACATATTTAGATATATTTTAGTAATTTTGAAGATATATTCAAGTATATGGCTTCACACAATTAGGAACAAGAATGACTATATATTTGCTACCTTACTAAAATAAAATGGATTTCTTTTGTTTTCACGAAGATTCTTATAAATTTATTCGCAATAAACAAAAATACTTGATGTACTTGTGGACGTTACTGAGTGCATATAGATTGATCTAGCTTTCTATCTTTGACGACACAGGTTTATCTATTGGATTGGCAACTATGATTGTTTTTATTGGTCTGTACTATTGGAGAATCAAATCTTCAGGTGTCAAAAACCAGTTAAGAACCAATTATCATGGTCTCTCAAGAAATACAACAATCCCAGAAAATGGAGCTGTCTACTTTGGGATTCCTGTCTTCTCCTATGAGGAGCTCAAAGAGGCAACAAACAATTTTGATCAAGCTCGAGAGCTTGGAGAAGGAGGCTTTGGGACTATTTACTATGGTAAGGGAGTTCTTGAACCCTTTCGTCCTCGAAGGATTCTACCAGTTTTCCATGAGATGTATGTGTCCAGGACAAATTTATTTTTATTTGTAATTGTTGTCTATGCAAGGTTTTAAATCGCAGTTGAGGTTGCTTTGCAATATTAGATATTGGGGAGAATCACAGTCAAATCCAGTCACAAAGACATTAAAAACTTTGTTGTCGCATACTTTGTCAAAATCCCGAGTCTATCGTGGTCTAGCCTTATTAAAGGATTATTGTGTGACGAATATAGGTTGTTGATCATAATATAGGGTAATCTCCATCCATCAGATTACATATATCTTTTAACTTTTTCAAGCAAACCAGTTTAGCTTTGCTTTAAAAATGATATGCTGATGTTAGTTTTTTGCTATGATTTTGGCCACATGTCAGTTATGTACAAAAGATCCTAAATTGAAGTTAAACATGTCTTGAGTAACATCAATTTTGATTCTTTAACAACCAGGAAAGCTTGGAGATGGACGAGAAGTTGCAGTGAAGCGCCTATTCGAGCGCAACTACCGACCAGTAGAATCATTCACAAACGAAATTCAGATCCTCACACGCATGCGCCACAGAAATCTGGTATCCCTTTATGGATGCACTTCGCGCCACAGTCGTGAGTTGCTGTTAGTCTATGAATACATCCCAAACGGAACAGTTAGTAGCCATCTCCATGACAACAAAGCAGGCCAAAGCTCATCATTACCATGGTCAGTCAGAATGAAAATAGCCATAGAAACCGCCAGTGCATTAACTTATCTCCATGCTTCCGATGTCATTCACCGAGACGTGAAGACCACCAACATTCTCCTTGACAACAGTTTCTGTGTCAAGGTTGCCGATTTTGGTCTTTCGAGACTATACCCTAATGATGTCACCCACGTCTCCACAGCACCGAGAGGAACACCAGGCTATGTGGATCCAGAATATCGCTTATGCTACCAGCTAACAAGCAAGAGCGATGTATATAGCTTCGGCGTGGTCCTTGTTGAGCTAATATCATCTTTGCCAGCAGTTGATTTGACAAGGGATAGAGATGACATTAAGTTGGCAAATCTAGCCATAAGGAAGATTCGAAGAAGCGAATATTGTGACTTGATTGATCCTTCTCTTGGTTTTCAGACAGATAAGAAATTGAAAAATGTGATAACTTCTGTTGCGGAATTGGCTTTTCAGTGTTTGCAAGAGGAGAAGGAATTGAGACCTACTATGTCTGAAGTGTTGGAGGTGCTGCAGAGAATTGAAAGCAGGAAGGATGAGGCAGGGAATCACGACGGGATTGATTTTCATCCTGAAGTAGGAGTAGCACAAAGTTATGTACATCCATCAGTTCCTAACACTTGGATGACGCCACGACGCCATCTACAAACACTTTGA

Protein sequence

>MS.gene070915.t1

MDAIIAPRLRTCSNIETVPITISTSLQVQNLIILPWPTPQIEHLSNIHTNRKEQHLKLAVIGLSIGLATMIVFIGLYYWRIKSSGVKNQLRTNYHGLSRNTTIPENGAVYFGIPVFSYEELKEATNNFDQARELGEGGFGTIYYGKLGDGREVAVKRLFERNYRPVESFTNEIQILTRMRHRNLVSLYGCTSRHSRELLLVYEYIPNGTVSSHLHDNKAGQSSSLPWSVRMKIAIETASALTYLHASDVIHRDVKTTNILLDNSFCVKVADFGLSRLYPNDVTHVSTAPRGTPGYVDPEYRLCYQLTSKSDVYSFGVVLVELISSLPAVDLTRDRDDIKLANLAIRKIRRSEYCDLIDPSLGFQTDKKLKNVITSVAELAFQCLQEEKELRPTMSEVLEVLQRIESRKDEAGNHDGIDFHPEVGVAQSYVHPSVPNTWMTPRRHLQTL