Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071171.t1 | XP_013456124.1 | 97.4 | 307 | 8 | 0 | 1 | 307 | 1 | 307 | 2.60E-165 | 591.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071171.t1 | O95208 | 33.1 | 151 | 96 | 2 | 27 | 173 | 14 | 163 | 1.6e-17 | 91.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071171.t1 | A0A072UWA8 | 97.4 | 307 | 8 | 0 | 1 | 307 | 1 | 307 | 1.9e-165 | 591.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene071171 | -0.822565 | 2.21E-53 | -1.69E-46 |
| MS.gene050082 | MS.gene071171 | 0.809026 | 2.32E-50 | -1.69E-46 |
| MS.gene050216 | MS.gene071171 | -0.812734 | 3.65E-51 | -1.69E-46 |
| MS.gene050496 | MS.gene071171 | -0.809647 | 1.71E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene071171 | -0.802727 | 4.89E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene071171 | -0.813449 | 2.55E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene071171 | -0.823803 | 1.14E-53 | -1.69E-46 |
| MS.gene050871 | MS.gene071171 | -0.821467 | 3.98E-53 | -1.69E-46 |
| MS.gene050904 | MS.gene071171 | -0.816031 | 6.82E-52 | -1.69E-46 |
| MS.gene051138 | MS.gene071171 | 0.822355 | 2.48E-53 | -1.69E-46 |
| MS.gene051410 | MS.gene071171 | 0.808361 | 3.22E-50 | -1.69E-46 |
| MS.gene052482 | MS.gene071171 | -0.807359 | 5.25E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene071171 | -0.80842 | 3.12E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene071171 | 0.831852 | 1.32E-55 | -1.69E-46 |
| MS.gene055202 | MS.gene071171 | 0.811983 | 5.33E-51 | -1.69E-46 |
| MS.gene055776 | MS.gene071171 | -0.803976 | 2.70E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene071171 | -0.803347 | 3.64E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene071171 | -0.827948 | 1.18E-54 | -1.69E-46 |
| MS.gene057014 | MS.gene071171 | 0.804527 | 2.07E-49 | -1.69E-46 |
| MS.gene058108 | MS.gene071171 | 0.806337 | 8.64E-50 | -1.69E-46 |
| MS.gene058111 | MS.gene071171 | 0.816534 | 5.26E-52 | -1.69E-46 |
| MS.gene058171 | MS.gene071171 | 0.88447 | 1.87E-71 | -1.69E-46 |
| MS.gene058173 | MS.gene071171 | 0.885448 | 8.06E-72 | -1.69E-46 |
| MS.gene058175 | MS.gene071171 | 0.8895 | 2.29E-73 | -1.69E-46 |
| MS.gene058494 | MS.gene071171 | 0.811042 | 8.53E-51 | -1.69E-46 |
| MS.gene059045 | MS.gene071171 | 0.832209 | 1.08E-55 | -1.69E-46 |
| MS.gene059865 | MS.gene071171 | -0.842245 | 2.91E-58 | -1.69E-46 |
| MS.gene060595 | MS.gene071171 | 0.825345 | 4.93E-54 | -1.69E-46 |
| MS.gene060778 | MS.gene071171 | -0.804261 | 2.35E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene071171 | -0.800299 | 1.54E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071171.t1 | MTR_4g063895 | 97.394 | 307 | 8 | 0 | 1 | 307 | 1 | 307 | 0.0 | 619 |
| MS.gene071171.t1 | MTR_4g063895 | 97.794 | 272 | 6 | 0 | 36 | 307 | 1 | 272 | 0.0 | 551 |
| MS.gene071171.t1 | MTR_1g075760 | 44.311 | 167 | 93 | 0 | 7 | 173 | 8 | 174 | 2.11e-47 | 161 |
| MS.gene071171.t1 | MTR_7g006280 | 32.877 | 146 | 94 | 2 | 16 | 161 | 12 | 153 | 8.18e-18 | 84.3 |
| MS.gene071171.t1 | MTR_1g016980 | 30.137 | 146 | 101 | 1 | 16 | 161 | 11 | 155 | 1.52e-17 | 83.2 |
| MS.gene071171.t1 | MTR_7g006100 | 31.206 | 141 | 81 | 2 | 37 | 172 | 613 | 742 | 2.79e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071171.t1 | AT3G46540 | 57.471 | 261 | 84 | 7 | 1 | 248 | 13 | 259 | 2.34e-82 | 251 |
| MS.gene071171.t1 | AT3G46540 | 57.471 | 261 | 84 | 7 | 1 | 248 | 1 | 247 | 2.82e-82 | 251 |
| MS.gene071171.t1 | AT3G46540 | 54.222 | 225 | 77 | 6 | 36 | 248 | 1 | 211 | 4.77e-62 | 197 |
| MS.gene071171.t1 | AT1G08670 | 45.714 | 175 | 93 | 2 | 1 | 173 | 5 | 179 | 4.62e-48 | 160 |
| MS.gene071171.t1 | AT3G23350 | 43.931 | 173 | 95 | 1 | 5 | 175 | 7 | 179 | 1.13e-46 | 159 |
| MS.gene071171.t1 | AT3G23350 | 43.931 | 173 | 95 | 1 | 5 | 175 | 6 | 178 | 1.16e-46 | 159 |
| MS.gene071171.t1 | AT1G08670 | 41.803 | 122 | 70 | 1 | 53 | 173 | 1 | 122 | 1.86e-28 | 108 |
| MS.gene071171.t1 | AT2G43160 | 28.571 | 217 | 126 | 4 | 16 | 228 | 12 | 203 | 6.05e-18 | 84.7 |
| MS.gene071171.t1 | AT2G43160 | 32.877 | 146 | 94 | 2 | 16 | 161 | 12 | 153 | 7.01e-18 | 84.7 |
| MS.gene071171.t1 | AT2G43160 | 32.877 | 146 | 94 | 2 | 16 | 161 | 12 | 153 | 7.01e-18 | 84.7 |
| MS.gene071171.t1 | AT2G43160 | 32.877 | 146 | 94 | 2 | 16 | 161 | 12 | 153 | 7.01e-18 | 84.7 |
| MS.gene071171.t1 | AT2G43160 | 32.877 | 146 | 94 | 2 | 16 | 161 | 12 | 153 | 7.01e-18 | 84.7 |
| MS.gene071171.t1 | AT5G11710 | 28.082 | 146 | 104 | 1 | 16 | 161 | 11 | 155 | 4.51e-16 | 79.0 |
| MS.gene071171.t1 | AT5G11710 | 28.082 | 146 | 104 | 1 | 16 | 161 | 11 | 155 | 4.51e-16 | 79.0 |
| MS.gene071171.t1 | AT5G11710 | 28.082 | 146 | 104 | 1 | 16 | 161 | 11 | 155 | 4.51e-16 | 79.0 |
| MS.gene071171.t1 | AT3G59290 | 35.433 | 127 | 81 | 1 | 34 | 160 | 27 | 152 | 6.60e-16 | 79.0 |
Find 66 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCCTCTGCTACACTTTC+TGG | 0.104086 | 4.2:-41108350 | None:intergenic |
| CATTTCTGTTGTTGAATTAA+AGG | 0.166107 | 4.2:-41109191 | None:intergenic |
| ATCAAGTTCTAAAGAAAATA+TGG | 0.298192 | 4.2:+41109060 | MS.gene071171:CDS |
| GCGGAGAAGACGATTCTTCT+AGG | 0.298733 | 4.2:+41109137 | MS.gene071171:CDS |
| TGGAGAGTCAGAATCACTTT+TGG | 0.312508 | 4.2:+41109111 | MS.gene071171:CDS |
| CTAAATTTGAAAAGAAGAAT+TGG | 0.317894 | 4.2:+41108276 | MS.gene071171:CDS |
| ACCCGTTCTGATCAATATAT+TGG | 0.319311 | 4.2:-41108412 | None:intergenic |
| ATTTCTGTTGTTGAATTAAA+GGG | 0.325448 | 4.2:-41109190 | None:intergenic |
| GACAATTTGCAGGTTCAATT+GGG | 0.329268 | 4.2:+41108721 | MS.gene071171:intron |
| TTATAGAGATTCTACATAAA+AGG | 0.331852 | 4.2:+41107989 | MS.gene071171:CDS |
| TGACAATTTGCAGGTTCAAT+TGG | 0.347533 | 4.2:+41108720 | MS.gene071171:intron |
| ATCATCATCTTTGTATATCA+TGG | 0.354388 | 4.2:-41109005 | None:intergenic |
| TCAAGAGGTATTCAAGGTTT+CGG | 0.389050 | 4.2:+41108836 | MS.gene071171:CDS |
| AAGAAAATATGGAACCTAGT+AGG | 0.398302 | 4.2:+41109071 | MS.gene071171:CDS |
| CTGATTTCTTTCTCACAGTT+AGG | 0.420075 | 4.2:-41108745 | None:intergenic |
| AGAGAGAGTAATGAAACTAT+TGG | 0.421249 | 4.2:+41108766 | MS.gene071171:CDS |
| AATTCATCTTTCTCAACCTT+AGG | 0.422317 | 4.2:+41108971 | MS.gene071171:CDS |
| CTTGAGCATTTGTTGACTCA+TGG | 0.422333 | 4.2:+41108326 | MS.gene071171:CDS |
| TCCAATATATTGATCAGAAC+GGG | 0.423953 | 4.2:+41108411 | MS.gene071171:CDS |
| AAGAAAGAAACCAATGTAGA+AGG | 0.430906 | 4.2:+41108810 | MS.gene071171:CDS |
| ATGATAGAAGAGGCAACTAA+TGG | 0.435665 | 4.2:+41107889 | MS.gene071171:CDS |
| AAGACGATTCTTCTAGGCTT+GGG | 0.437856 | 4.2:+41109143 | MS.gene071171:CDS |
| TCCTTGCTTTCTGCTAGAGA+TGG | 0.439226 | 4.2:+41109226 | MS.gene071171:CDS |
| ATATACAAAGATGATGATAT+AGG | 0.448838 | 4.2:+41109010 | MS.gene071171:CDS |
| CTCAAACAACTACGAAGATC+AGG | 0.449845 | 4.2:+41108943 | MS.gene071171:CDS |
| CAATGATTTCTCGCGTAGAA+TGG | 0.452826 | 4.2:-41108891 | None:intergenic |
| AAATCATTGCCAACCACATT+CGG | 0.454765 | 4.2:+41108905 | MS.gene071171:CDS |
| AAGTTCCACACCTCCCTACT+AGG | 0.456583 | 4.2:-41109085 | None:intergenic |
| AGGTTATCAAGAGGTATTCA+AGG | 0.457152 | 4.2:+41108830 | MS.gene071171:CDS |
| GAAGACGATTCTTCTAGGCT+TGG | 0.466472 | 4.2:+41109142 | MS.gene071171:CDS |
| AGAAAATATGGAACCTAGTA+GGG | 0.473708 | 4.2:+41109072 | MS.gene071171:CDS |
| GATCTGAGGGTTACAGTAGT+TGG | 0.473866 | 4.2:-41107925 | None:intergenic |
| TCGCGTAGAATGGCTTGTGT+TGG | 0.476480 | 4.2:-41108881 | None:intergenic |
| CACAATCAAGGAATTGTAAG+AGG | 0.479866 | 4.2:-41108303 | None:intergenic |
| TAGTAGGGAGGTGTGGAACT+TGG | 0.490662 | 4.2:+41109087 | MS.gene071171:CDS |
| CTCTTGATAACCTTCTACAT+TGG | 0.492948 | 4.2:-41108820 | None:intergenic |
| GTTACAGTAGTTGGTGCCCA+TGG | 0.502809 | 4.2:-41107916 | None:intergenic |
| AGGGAGGTGTGGAACTTGGA+TGG | 0.503033 | 4.2:+41109091 | MS.gene071171:CDS |
| TAACAAGCTCACAGTTCTGC+AGG | 0.506386 | 4.2:-41107732 | None:intergenic |
| CAAATGCTCAAGCACAATCA+AGG | 0.506589 | 4.2:-41108315 | None:intergenic |
| TATATTGGAAACCTTTCAGC+TGG | 0.516997 | 4.2:-41108397 | None:intergenic |
| AGCCTTTGAAATTGATCTGA+GGG | 0.520257 | 4.2:-41107938 | None:intergenic |
| AGGCAACTAATGGAAATCCA+TGG | 0.532106 | 4.2:+41107899 | MS.gene071171:CDS |
| GTAATGAAACTATTGGAAGA+AGG | 0.539452 | 4.2:+41108773 | MS.gene071171:CDS |
| GCTAGAGATGGAATACTACA+AGG | 0.551404 | 4.2:+41109238 | MS.gene071171:CDS |
| CAGCCTTTGAAATTGATCTG+AGG | 0.552074 | 4.2:-41107939 | None:intergenic |
| TTCCAATATATTGATCAGAA+CGG | 0.554896 | 4.2:+41108410 | MS.gene071171:CDS |
| GATGTTATTGACCAGCTGAA+AGG | 0.568995 | 4.2:+41108386 | MS.gene071171:CDS |
| TCCATCTCTAGCAGAAAGCA+AGG | 0.572809 | 4.2:-41109227 | None:intergenic |
| TTTCTGTTGTTGAATTAAAG+GGG | 0.580526 | 4.2:-41109189 | None:intergenic |
| AATTTGAAAAGAAGAATTGG+AGG | 0.586374 | 4.2:+41108279 | MS.gene071171:CDS |
| ACAATTTGCAGGTTCAATTG+GGG | 0.587617 | 4.2:+41108722 | MS.gene071171:intron |
| TTGAGCTAGATGATTATAGG+AGG | 0.590229 | 4.2:+41107965 | MS.gene071171:CDS |
| GGCAACTAATGGAAATCCAT+GGG | 0.593719 | 4.2:+41107900 | MS.gene071171:CDS |
| AACCCTCAGATCAATTTCAA+AGG | 0.602620 | 4.2:+41107936 | MS.gene071171:CDS |
| TGAATTACATCTACCGAATG+TGG | 0.602951 | 4.2:-41108918 | None:intergenic |
| ATTTGAAAAGAAGAATTGGA+GGG | 0.607233 | 4.2:+41108280 | MS.gene071171:CDS |
| ACGATTCTTCTAGGCTTGGG+AGG | 0.614811 | 4.2:+41109146 | MS.gene071171:CDS |
| TTACATCTACCGAATGTGGT+TGG | 0.615754 | 4.2:-41108914 | None:intergenic |
| GGAAGAAGGAAATCTTCTCA+AGG | 0.620593 | 4.2:+41108787 | MS.gene071171:CDS |
| TGGAACCTAGTAGGGAGGTG+TGG | 0.635291 | 4.2:+41109080 | MS.gene071171:CDS |
| TGGACCAGAAAGTGTAGCAG+AGG | 0.637626 | 4.2:+41108346 | MS.gene071171:CDS |
| CAATGTAGAAGGTTATCAAG+AGG | 0.650694 | 4.2:+41108821 | MS.gene071171:CDS |
| AAATATGGAACCTAGTAGGG+AGG | 0.663757 | 4.2:+41109075 | MS.gene071171:CDS |
| CTAGAGATGGAATACTACAA+GGG | 0.670524 | 4.2:+41109239 | MS.gene071171:CDS |
| TCTTTGAAGAATGATAGAAG+AGG | 0.674445 | 4.2:+41107879 | MS.gene071171:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTGAGTAAAAAAAGA+AGG | - | chr4.2:41108447-41108466 | None:intergenic | 15.0% |
| !! | AATTGTTTACCTAAAAAATT+TGG | + | chr4.2:41108645-41108664 | MS.gene071171:intron | 15.0% |
| !!! | TTTTTAGGTAAACAATTTTT+TGG | - | chr4.2:41108642-41108661 | None:intergenic | 15.0% |
| !! | ATATACAAAGATGATGATAT+AGG | + | chr4.2:41109010-41109029 | MS.gene071171:CDS | 20.0% |
| !! | ATGCTAAGTAAAAAAAATGA+GGG | - | chr4.2:41108027-41108046 | None:intergenic | 20.0% |
| !! | ATTTCTGTTGTTGAATTAAA+GGG | - | chr4.2:41109193-41109212 | None:intergenic | 20.0% |
| !! | CTAAATTTGAAAAGAAGAAT+TGG | + | chr4.2:41108276-41108295 | MS.gene071171:CDS | 20.0% |
| !! | TTATAGAGATTCTACATAAA+AGG | + | chr4.2:41107989-41108008 | MS.gene071171:CDS | 20.0% |
| !!! | ATCAAGTTCTAAAGAAAATA+TGG | + | chr4.2:41109060-41109079 | MS.gene071171:CDS | 20.0% |
| !!! | ATTCAATGACCAAATTTTTT+AGG | - | chr4.2:41108657-41108676 | None:intergenic | 20.0% |
| !!! | GATACAATTCTAAAATAGAT+TGG | + | chr4.2:41108253-41108272 | MS.gene071171:intron | 20.0% |
| !!! | GTTTTTTGAATTCATAGAAA+GGG | - | chr4.2:41107650-41107669 | None:intergenic | 20.0% |
| !!! | TGTTTTTTGAATTCATAGAA+AGG | - | chr4.2:41107651-41107670 | None:intergenic | 20.0% |
| !!! | TTTTTTGAATTCATAGAAAG+GGG | - | chr4.2:41107649-41107668 | None:intergenic | 20.0% |
| ! | AAGATATTATGACAATTTGC+AGG | + | chr4.2:41108711-41108730 | MS.gene071171:intron | 25.0% |
| ! | AATTTGAAAAGAAGAATTGG+AGG | + | chr4.2:41108279-41108298 | MS.gene071171:CDS | 25.0% |
| ! | ATCATCATCTTTGTATATCA+TGG | - | chr4.2:41109008-41109027 | None:intergenic | 25.0% |
| ! | ATTTGAAAAGAAGAATTGGA+GGG | + | chr4.2:41108280-41108299 | MS.gene071171:CDS | 25.0% |
| ! | CATGCTAAGTAAAAAAAATG+AGG | - | chr4.2:41108028-41108047 | None:intergenic | 25.0% |
| ! | CATTTCTGTTGTTGAATTAA+AGG | - | chr4.2:41109194-41109213 | None:intergenic | 25.0% |
| ! | TGCTAAGTAAAAAAAATGAG+GGG | - | chr4.2:41108026-41108045 | None:intergenic | 25.0% |
| ! | TGTTACTAAATGAATCATGA+TGG | + | chr4.2:41108220-41108239 | MS.gene071171:intron | 25.0% |
| ! | TTCCAATATATTGATCAGAA+CGG | + | chr4.2:41108410-41108429 | MS.gene071171:CDS | 25.0% |
| ! | TTTCTGTTGTTGAATTAAAG+GGG | - | chr4.2:41109192-41109211 | None:intergenic | 25.0% |
| !! | TATCGAAAACAATTTTGTCA+TGG | + | chr4.2:41108150-41108169 | MS.gene071171:intron | 25.0% |
| !!! | ATTTCCAAGGTTTTAAATTG+CGG | + | chr4.2:41108054-41108073 | MS.gene071171:intron | 25.0% |
| AAGAAAATATGGAACCTAGT+AGG | + | chr4.2:41109071-41109090 | MS.gene071171:CDS | 30.0% | |
| AAGAAAGAAACCAATGTAGA+AGG | + | chr4.2:41108810-41108829 | MS.gene071171:CDS | 30.0% | |
| AATTCATCTTTCTCAACCTT+AGG | + | chr4.2:41108971-41108990 | MS.gene071171:CDS | 30.0% | |
| AGAAAATATGGAACCTAGTA+GGG | + | chr4.2:41109072-41109091 | MS.gene071171:CDS | 30.0% | |
| AGAGAGAGTAATGAAACTAT+TGG | + | chr4.2:41108766-41108785 | MS.gene071171:CDS | 30.0% | |
| ATATCCAAAACTATAGCTCT+AGG | + | chr4.2:41107828-41107847 | MS.gene071171:intron | 30.0% | |
| GCAATCAAATTCGATATATG+TGG | + | chr4.2:41108114-41108133 | MS.gene071171:intron | 30.0% | |
| GCTAAGTAAAAAAAATGAGG+GGG | - | chr4.2:41108025-41108044 | None:intergenic | 30.0% | |
| GTAATGAAACTATTGGAAGA+AGG | + | chr4.2:41108773-41108792 | MS.gene071171:CDS | 30.0% | |
| TAGTAACAAAGAAGTGATCA+CGG | - | chr4.2:41108208-41108227 | None:intergenic | 30.0% | |
| TCCAATATATTGATCAGAAC+GGG | + | chr4.2:41108411-41108430 | MS.gene071171:CDS | 30.0% | |
| ! | AAATCCTAGAGCTATAGTTT+TGG | - | chr4.2:41107835-41107854 | None:intergenic | 30.0% |
| ! | CATGGTTTTCATATTACCTA+AGG | - | chr4.2:41108990-41109009 | None:intergenic | 30.0% |
| ! | CTTTTGAGCTAGATGATTAT+AGG | + | chr4.2:41107962-41107981 | MS.gene071171:CDS | 30.0% |
| ! | GCAATTTAAAACCTTGGAAA+TGG | - | chr4.2:41108055-41108074 | None:intergenic | 30.0% |
| ! | TCTTTGAAGAATGATAGAAG+AGG | + | chr4.2:41107879-41107898 | MS.gene071171:intron | 30.0% |
| AAATCATTGCCAACCACATT+CGG | + | chr4.2:41108905-41108924 | MS.gene071171:CDS | 35.0% | |
| AACCCTCAGATCAATTTCAA+AGG | + | chr4.2:41107936-41107955 | MS.gene071171:CDS | 35.0% | |
| ACAATTTGCAGGTTCAATTG+GGG | + | chr4.2:41108722-41108741 | MS.gene071171:intron | 35.0% | |
| ACCCGTTCTGATCAATATAT+TGG | - | chr4.2:41108415-41108434 | None:intergenic | 35.0% | |
| ATGATAGAAGAGGCAACTAA+TGG | + | chr4.2:41107889-41107908 | MS.gene071171:CDS | 35.0% | |
| CAATGTAGAAGGTTATCAAG+AGG | + | chr4.2:41108821-41108840 | MS.gene071171:CDS | 35.0% | |
| CACAATCAAGGAATTGTAAG+AGG | - | chr4.2:41108306-41108325 | None:intergenic | 35.0% | |
| CTAGAGATGGAATACTACAA+GGG | + | chr4.2:41109239-41109258 | MS.gene071171:CDS | 35.0% | |
| CTGATTTCTTTCTCACAGTT+AGG | - | chr4.2:41108748-41108767 | None:intergenic | 35.0% | |
| GACAATTTGCAGGTTCAATT+GGG | + | chr4.2:41108721-41108740 | MS.gene071171:intron | 35.0% | |
| TATATTGGAAACCTTTCAGC+TGG | - | chr4.2:41108400-41108419 | None:intergenic | 35.0% | |
| TGAATTACATCTACCGAATG+TGG | - | chr4.2:41108921-41108940 | None:intergenic | 35.0% | |
| TGACAATTTGCAGGTTCAAT+TGG | + | chr4.2:41108720-41108739 | MS.gene071171:intron | 35.0% | |
| TTGAGCTAGATGATTATAGG+AGG | + | chr4.2:41107965-41107984 | MS.gene071171:CDS | 35.0% | |
| ! | CAGTCTTGATTTTCTCTTTG+AGG | - | chr4.2:41107686-41107705 | None:intergenic | 35.0% |
| ! | CTCTTGATAACCTTCTACAT+TGG | - | chr4.2:41108823-41108842 | None:intergenic | 35.0% |
| ! | GAATTTCTTCCAGTTGATAC+TGG | + | chr4.2:41108673-41108692 | MS.gene071171:intron | 35.0% |
| !! | AGCCTTTGAAATTGATCTGA+GGG | - | chr4.2:41107941-41107960 | None:intergenic | 35.0% |
| !! | AGGTTATCAAGAGGTATTCA+AGG | + | chr4.2:41108830-41108849 | MS.gene071171:CDS | 35.0% |
| !! | TCAAGAGGTATTCAAGGTTT+CGG | + | chr4.2:41108836-41108855 | MS.gene071171:CDS | 35.0% |
| !! | TCAGAATCACTTTTGGATTG+CGG | + | chr4.2:41109118-41109137 | MS.gene071171:CDS | 35.0% |
| !!! | GTGATCACGGTTTTAAATGA+AGG | - | chr4.2:41108195-41108214 | None:intergenic | 35.0% |
| AAATATGGAACCTAGTAGGG+AGG | + | chr4.2:41109075-41109094 | MS.gene071171:CDS | 40.0% | |
| AAGACGATTCTTCTAGGCTT+GGG | + | chr4.2:41109143-41109162 | MS.gene071171:CDS | 40.0% | |
| AATTCCTCTGCTACACTTTC+TGG | - | chr4.2:41108353-41108372 | None:intergenic | 40.0% | |
| AGGCAACTAATGGAAATCCA+TGG | + | chr4.2:41107899-41107918 | MS.gene071171:CDS | 40.0% | |
| CAAATGCTCAAGCACAATCA+AGG | - | chr4.2:41108318-41108337 | None:intergenic | 40.0% | |
| CAATGATTTCTCGCGTAGAA+TGG | - | chr4.2:41108894-41108913 | None:intergenic | 40.0% | |
| CTCAAACAACTACGAAGATC+AGG | + | chr4.2:41108943-41108962 | MS.gene071171:CDS | 40.0% | |
| GATGTTATTGACCAGCTGAA+AGG | + | chr4.2:41108386-41108405 | MS.gene071171:CDS | 40.0% | |
| GCTAGAGATGGAATACTACA+AGG | + | chr4.2:41109238-41109257 | MS.gene071171:CDS | 40.0% | |
| GGAAGAAGGAAATCTTCTCA+AGG | + | chr4.2:41108787-41108806 | MS.gene071171:CDS | 40.0% | |
| GGCAACTAATGGAAATCCAT+GGG | + | chr4.2:41107900-41107919 | MS.gene071171:CDS | 40.0% | |
| GTGAAAAGGACCTGATAATC+TGG | - | chr4.2:41108599-41108618 | None:intergenic | 40.0% | |
| TAGCATGTTCACCATTTCCA+AGG | + | chr4.2:41108041-41108060 | MS.gene071171:intron | 40.0% | |
| TTACATCTACCGAATGTGGT+TGG | - | chr4.2:41108917-41108936 | None:intergenic | 40.0% | |
| ! | AGGTCCTTTTCACCTAGTAA+AGG | + | chr4.2:41108606-41108625 | MS.gene071171:intron | 40.0% |
| ! | CCTTTTCACCTAGTAAAGGA+GGG | + | chr4.2:41108610-41108629 | MS.gene071171:intron | 40.0% |
| ! | TCCTTTTCACCTAGTAAAGG+AGG | + | chr4.2:41108609-41108628 | MS.gene071171:intron | 40.0% |
| ! | TGGAGAGTCAGAATCACTTT+TGG | + | chr4.2:41109111-41109130 | MS.gene071171:CDS | 40.0% |
| !! | CAGCCTTTGAAATTGATCTG+AGG | - | chr4.2:41107942-41107961 | None:intergenic | 40.0% |
| !! | CTTGAGCATTTGTTGACTCA+TGG | + | chr4.2:41108326-41108345 | MS.gene071171:CDS | 40.0% |
| !! | GGTTTTAACCCTCCTTTACT+AGG | - | chr4.2:41108621-41108640 | None:intergenic | 40.0% |
| CCCTCCTTTACTAGGTGAAA+AGG | - | chr4.2:41108613-41108632 | None:intergenic | 45.0% | |
| CGAGCAAACTCCAGATTATC+AGG | + | chr4.2:41108586-41108605 | MS.gene071171:intron | 45.0% | |
| GAAGACGATTCTTCTAGGCT+TGG | + | chr4.2:41109142-41109161 | MS.gene071171:CDS | 45.0% | |
| GATCTGAGGGTTACAGTAGT+TGG | - | chr4.2:41107928-41107947 | None:intergenic | 45.0% | |
| TAACAAGCTCACAGTTCTGC+AGG | - | chr4.2:41107735-41107754 | None:intergenic | 45.0% | |
| TCCATCTCTAGCAGAAAGCA+AGG | - | chr4.2:41109230-41109249 | None:intergenic | 45.0% | |
| TCCTTGCTTTCTGCTAGAGA+TGG | + | chr4.2:41109226-41109245 | MS.gene071171:CDS | 45.0% | |
| ! | GCGACCGCAATTTAAAACCT+TGG | - | chr4.2:41108061-41108080 | None:intergenic | 45.0% |
| AAGTTCCACACCTCCCTACT+AGG | - | chr4.2:41109088-41109107 | None:intergenic | 50.0% | |
| ACGATTCTTCTAGGCTTGGG+AGG | + | chr4.2:41109146-41109165 | MS.gene071171:CDS | 50.0% | |
| CTTGCAGCACCAGTATCAAC+TGG | - | chr4.2:41108685-41108704 | None:intergenic | 50.0% | |
| GCGGAGAAGACGATTCTTCT+AGG | + | chr4.2:41109137-41109156 | MS.gene071171:CDS | 50.0% | |
| ! | GTTACAGTAGTTGGTGCCCA+TGG | - | chr4.2:41107919-41107938 | None:intergenic | 50.0% |
| ! | TAGTAGGGAGGTGTGGAACT+TGG | + | chr4.2:41109087-41109106 | MS.gene071171:CDS | 50.0% |
| ! | TCGCGTAGAATGGCTTGTGT+TGG | - | chr4.2:41108884-41108903 | None:intergenic | 50.0% |
| ! | TGGACCAGAAAGTGTAGCAG+AGG | + | chr4.2:41108346-41108365 | MS.gene071171:CDS | 50.0% |
| AAGGTCTGCGAGCGCAATCT+AGG | - | chr4.2:41108176-41108195 | None:intergenic | 55.0% | |
| TGGAACCTAGTAGGGAGGTG+TGG | + | chr4.2:41109080-41109099 | MS.gene071171:CDS | 55.0% | |
| ! | AGGGAGGTGTGGAACTTGGA+TGG | + | chr4.2:41109091-41109110 | MS.gene071171:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 41107639 | 41109267 | 41107639 | ID=MS.gene071171 |
| chr4.2 | mRNA | 41107639 | 41109267 | 41107639 | ID=MS.gene071171.t1;Parent=MS.gene071171 |
| chr4.2 | exon | 41107639 | 41107742 | 41107639 | ID=MS.gene071171.t1.exon1;Parent=MS.gene071171.t1 |
| chr4.2 | CDS | 41107639 | 41107742 | 41107639 | ID=cds.MS.gene071171.t1;Parent=MS.gene071171.t1 |
| chr4.2 | exon | 41107888 | 41108010 | 41107888 | ID=MS.gene071171.t1.exon2;Parent=MS.gene071171.t1 |
| chr4.2 | CDS | 41107888 | 41108010 | 41107888 | ID=cds.MS.gene071171.t1;Parent=MS.gene071171.t1 |
| chr4.2 | exon | 41108271 | 41108432 | 41108271 | ID=MS.gene071171.t1.exon3;Parent=MS.gene071171.t1 |
| chr4.2 | CDS | 41108271 | 41108432 | 41108271 | ID=cds.MS.gene071171.t1;Parent=MS.gene071171.t1 |
| chr4.2 | exon | 41108733 | 41109267 | 41108733 | ID=MS.gene071171.t1.exon4;Parent=MS.gene071171.t1 |
| chr4.2 | CDS | 41108733 | 41109267 | 41108733 | ID=cds.MS.gene071171.t1;Parent=MS.gene071171.t1 |
| Gene Sequence |
| Protein sequence |
