AlfalfaGEDB | MS.gene071171

M. sativa cultivar XinJiangDaYe / MS.gene071171

KEGG: K12471
GO: -
PFAM: PF01417.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071171.t1	XP_013456124.1	97.4	307	8	0	1	307	1	307	2.60E-165	591.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071171.t1	O95208	33.1	151	96	2	27	173	14	163	1.6e-17	91.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071171.t1	A0A072UWA8	97.4	307	8	0	1	307	1	307	1.9e-165	591.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049232	MS.gene071171	-0.822565	2.21E-53	-1.69E-46
MS.gene050082	MS.gene071171	0.809026	2.32E-50	-1.69E-46
MS.gene050216	MS.gene071171	-0.812734	3.65E-51	-1.69E-46
MS.gene050496	MS.gene071171	-0.809647	1.71E-50	-1.69E-46
MS.gene050504	MS.gene071171	-0.802727	4.89E-49	-1.69E-46
MS.gene050612	MS.gene071171	-0.813449	2.55E-51	-1.69E-46
MS.gene050868	MS.gene071171	-0.823803	1.14E-53	-1.69E-46
MS.gene050871	MS.gene071171	-0.821467	3.98E-53	-1.69E-46
MS.gene050904	MS.gene071171	-0.816031	6.82E-52	-1.69E-46
MS.gene051138	MS.gene071171	0.822355	2.48E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071171.t1	MTR_4g063895	97.394	307	8	0	1	307	1	307	0.0	619
MS.gene071171.t1	MTR_4g063895	97.794	272	6	0	36	307	1	272	0.0	551
MS.gene071171.t1	MTR_1g075760	44.311	167	93	0	7	173	8	174	2.11e-47	161
MS.gene071171.t1	MTR_7g006280	32.877	146	94	2	16	161	12	153	8.18e-18	84.3
MS.gene071171.t1	MTR_1g016980	30.137	146	101	1	16	161	11	155	1.52e-17	83.2
MS.gene071171.t1	MTR_7g006100	31.206	141	81	2	37	172	613	742	2.79e-12	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071171.t1	AT3G46540	57.471	261	84	7	1	248	13	259	2.34e-82	251
MS.gene071171.t1	AT3G46540	57.471	261	84	7	1	248	1	247	2.82e-82	251
MS.gene071171.t1	AT3G46540	54.222	225	77	6	36	248	1	211	4.77e-62	197
MS.gene071171.t1	AT1G08670	45.714	175	93	2	1	173	5	179	4.62e-48	160
MS.gene071171.t1	AT3G23350	43.931	173	95	1	5	175	7	179	1.13e-46	159
MS.gene071171.t1	AT3G23350	43.931	173	95	1	5	175	6	178	1.16e-46	159
MS.gene071171.t1	AT1G08670	41.803	122	70	1	53	173	1	122	1.86e-28	108
MS.gene071171.t1	AT2G43160	28.571	217	126	4	16	228	12	203	6.05e-18	84.7
MS.gene071171.t1	AT2G43160	32.877	146	94	2	16	161	12	153	7.01e-18	84.7
MS.gene071171.t1	AT2G43160	32.877	146	94	2	16	161	12	153	7.01e-18	84.7

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Find 66 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATGGAACCTAGTAGGG+AGG	0.663757	4.2:+41109075	MS.gene071171:CDS
AAATCATTGCCAACCACATT+CGG	0.454765	4.2:+41108905	MS.gene071171:CDS
AACCCTCAGATCAATTTCAA+AGG	0.602620	4.2:+41107936	MS.gene071171:CDS
AAGAAAATATGGAACCTAGT+AGG	0.398302	4.2:+41109071	MS.gene071171:CDS
AAGAAAGAAACCAATGTAGA+AGG	0.430906	4.2:+41108810	MS.gene071171:CDS
AAGACGATTCTTCTAGGCTT+GGG	0.437856	4.2:+41109143	MS.gene071171:CDS
AAGTTCCACACCTCCCTACT+AGG	0.456583	4.2:-41109085	None:intergenic
AATTCATCTTTCTCAACCTT+AGG	0.422317	4.2:+41108971	MS.gene071171:CDS
AATTCCTCTGCTACACTTTC+TGG	0.104086	4.2:-41108350	None:intergenic
AATTTGAAAAGAAGAATTGG+AGG	0.586374	4.2:+41108279	MS.gene071171:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAATATGGAACCTAGT+AGG	+	chr4.2:41109071-41109090	MS.gene071171:CDS	30.0%
AAGAAAGAAACCAATGTAGA+AGG	+	chr4.2:41108810-41108829	MS.gene071171:CDS	30.0%
AATTCATCTTTCTCAACCTT+AGG	+	chr4.2:41108971-41108990	MS.gene071171:CDS	30.0%
AGAAAATATGGAACCTAGTA+GGG	+	chr4.2:41109072-41109091	MS.gene071171:CDS	30.0%
AGAGAGAGTAATGAAACTAT+TGG	+	chr4.2:41108766-41108785	MS.gene071171:CDS	30.0%
ATATCCAAAACTATAGCTCT+AGG	+	chr4.2:41107828-41107847	MS.gene071171:intron	30.0%
GCAATCAAATTCGATATATG+TGG	+	chr4.2:41108114-41108133	MS.gene071171:intron	30.0%
GCTAAGTAAAAAAAATGAGG+GGG	-	chr4.2:41108025-41108044	None:intergenic	30.0%
GTAATGAAACTATTGGAAGA+AGG	+	chr4.2:41108773-41108792	MS.gene071171:CDS	30.0%
TAGTAACAAAGAAGTGATCA+CGG	-	chr4.2:41108208-41108227	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	41107639	41109267	41107639	ID=MS.gene071171
chr4.2	mRNA	41107639	41109267	41107639	ID=MS.gene071171.t1;Parent=MS.gene071171
chr4.2	exon	41107639	41107742	41107639	ID=MS.gene071171.t1.exon1;Parent=MS.gene071171.t1
chr4.2	CDS	41107639	41107742	41107639	ID=cds.MS.gene071171.t1;Parent=MS.gene071171.t1
chr4.2	exon	41107888	41108010	41107888	ID=MS.gene071171.t1.exon2;Parent=MS.gene071171.t1
chr4.2	CDS	41107888	41108010	41107888	ID=cds.MS.gene071171.t1;Parent=MS.gene071171.t1
chr4.2	exon	41108271	41108432	41108271	ID=MS.gene071171.t1.exon3;Parent=MS.gene071171.t1
chr4.2	CDS	41108271	41108432	41108271	ID=cds.MS.gene071171.t1;Parent=MS.gene071171.t1
chr4.2	exon	41108733	41109267	41108733	ID=MS.gene071171.t1.exon4;Parent=MS.gene071171.t1
chr4.2	CDS	41108733	41109267	41108733	ID=cds.MS.gene071171.t1;Parent=MS.gene071171.t1

Gene Sequence

>MS.gene071171

ATGAGCACCCCTTTCTATGAATTCAAAAAACAAGCTTCATTTTTCCTCAAAGAGAAAATCAAGACTGCTAGATTAGCTCTAACAGATGTCACACCTGCAGAACTGTGAGCTTGTTATTTTTATTTGTATAATCATAAGATTTTGATTTGTTTTAAATCTTGATTACACTTCAAATTATTATTATTTCATATATCCAAAACTATAGCTCTAGGATTTCTAATATATACACTTTTTTTTTACTCTTTGAAGAATGATAGAAGAGGCAACTAATGGAAATCCATGGGCACCAACTACTGTAACCCTCAGATCAATTTCAAAGGCTGCTTTTGAGCTAGATGATTATAGGAGGATTATAGAGATTCTACATAAAAGGTATTTCTACACCCCCTCATTTTTTTTACTTAGCATGTTCACCATTTCCAAGGTTTTAAATTGCGGTCGCAGTTGCATCACAATCTTAATATTGAGAAAAATTGCAATCAAATTCGATATATGTGGTCATAATCAACAATATCGAAAACAATTTTGTCATGGCCTAGATTGCGCTCGCAGACCTTCATTTAAAACCGTGATCACTTCTTTGTTACTAAATGAATCATGATGGATTAAGAACTGATACAATTCTAAAATAGATTGGCTAAATTTGAAAAGAAGAATTGGAGGGCCTCTTACAATTCCTTGATTGTGCTTGAGCATTTGTTGACTCATGGACCAGAAAGTGTAGCAGAGGAATTTCAGAGTGACAAAGATGTTATTGACCAGCTGAAAGGTTTCCAATATATTGATCAGAACGGGTATGTGTTTACCTTCTTTTTTTACTCAATTTTTATCTAATAAAGTGATTAAGCTCAAGTGATTAATGTGTTTCGATTAAGATCAAATTGTTAGAAAAAACTCTAGTTTGAATCATGACGAGAACAATCTTTTACAAGAGTTTACTTACTTTGCGAGCAAACTCCAGATTATCAGGTCCTTTTCACCTAGTAAAGGAGGGTTAAAACCAAAAAATTGTTTACCTAAAAAATTTGGTCATTGAATTTCTTCCAGTTGATACTGGTGCTGCAAGCTCATGAAGATATTATGACAATTTGCAGGTTCAATTGGGGCCTAACTGTGAGAAAGAAATCAGAGAGAGTAATGAAACTATTGGAAGAAGGAAATCTTCTCAAGGAAGAAAGAAACCAATGTAGAAGGTTATCAAGAGGTATTCAAGGTTTCGGAAGTTTCACTCAAAGATCAACTCCAACACAAGCCATTCTACGCGAGAAATCATTGCCAACCACATTCGGTAGATGTAATTCAGACTCAAACAACTACGAAGATCAGGAAAATAATTCATCTTTCTCAACCTTAGGTAATATGAAAACCATGATATACAAAGATGATGATATAGGCAACAATCAATTGCTTCAGAAATCTGAATCAAGTTCTAAAGAAAATATGGAACCTAGTAGGGAGGTGTGGAACTTGGATGGAGAGTCAGAATCACTTTTGGATTGCGGAGAAGACGATTCTTCTAGGCTTGGGAGGTTCAAAATAGAAGATGATCACCCCTTTAATTCAACAACAGAAATGAATAGTACTGCTTCCTTGCTTTCTGCTAGAGATGGAATACTACAAGGGTGTTGA

Protein sequence

>MS.gene071171.t1

MSTPFYEFKKQASFFLKEKIKTARLALTDVTPAELMIEEATNGNPWAPTTVTLRSISKAAFELDDYRRIIEILHKRLAKFEKKNWRASYNSLIVLEHLLTHGPESVAEEFQSDKDVIDQLKGFQYIDQNGFNWGLTVRKKSERVMKLLEEGNLLKEERNQCRRLSRGIQGFGSFTQRSTPTQAILREKSLPTTFGRCNSDSNNYEDQENNSSFSTLGNMKTMIYKDDDIGNNQLLQKSESSSKENMEPSREVWNLDGESESLLDCGEDDSSRLGRFKIEDDHPFNSTTEMNSTASLLSARDGILQGC