Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07263.t1 | XP_003591445.3 | 98.3 | 230 | 2 | 2 | 1 | 229 | 46 | 274 | 3.50E-122 | 447.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07263.t1 | Q9LZK4 | 41.4 | 244 | 116 | 8 | 1 | 227 | 46 | 279 | 3.8e-32 | 139.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07263.t1 | A0A396JRX5 | 98.3 | 230 | 2 | 2 | 1 | 229 | 46 | 274 | 2.5e-122 | 447.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene07263 | 0.828165 | 1.05E-54 | -1.69E-46 |
| MS.gene049910 | MS.gene07263 | 0.821829 | 3.28E-53 | -1.69E-46 |
| MS.gene050226 | MS.gene07263 | 0.825412 | 4.75E-54 | -1.69E-46 |
| MS.gene050227 | MS.gene07263 | 0.825529 | 4.46E-54 | -1.69E-46 |
| MS.gene050228 | MS.gene07263 | 0.817176 | 3.78E-52 | -1.69E-46 |
| MS.gene050623 | MS.gene07263 | -0.824643 | 7.22E-54 | -1.69E-46 |
| MS.gene050971 | MS.gene07263 | 0.803175 | 3.95E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene07263 | 0.847081 | 1.45E-59 | -1.69E-46 |
| MS.gene051983 | MS.gene07263 | 0.804012 | 2.65E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene07263 | 0.833807 | 4.31E-56 | -1.69E-46 |
| MS.gene052253 | MS.gene07263 | 0.801359 | 9.34E-49 | -1.69E-46 |
| MS.gene053811 | MS.gene07263 | 0.809932 | 1.48E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene07263 | 0.826701 | 2.35E-54 | -1.69E-46 |
| MS.gene054011 | MS.gene07263 | 0.812354 | 4.42E-51 | -1.69E-46 |
| MS.gene054184 | MS.gene07263 | 0.836612 | 8.45E-57 | -1.69E-46 |
| MS.gene054185 | MS.gene07263 | 0.834963 | 2.21E-56 | -1.69E-46 |
| MS.gene056875 | MS.gene07263 | 0.805832 | 1.10E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene07263 | 0.830381 | 3.03E-55 | -1.69E-46 |
| MS.gene05907 | MS.gene07263 | 0.812933 | 3.30E-51 | -1.69E-46 |
| MS.gene059421 | MS.gene07263 | 0.834078 | 3.69E-56 | -1.69E-46 |
| MS.gene05984 | MS.gene07263 | 0.834016 | 3.82E-56 | -1.69E-46 |
| MS.gene060404 | MS.gene07263 | 0.824509 | 7.77E-54 | -1.69E-46 |
| MS.gene060986 | MS.gene07263 | 0.804358 | 2.24E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene07263 | 0.808581 | 2.89E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAATTTGAAGGATTATTA+AGG | 0.269142 | 1.3:+61917886 | None:intergenic |
| GAATTATGTGACGACATCTT+AGG | 0.277715 | 1.3:+61921733 | MS.gene07263:CDS |
| GTACGTGGAATTTGAACTTC+TGG | 0.344780 | 1.3:-61921622 | None:intergenic |
| TCCACACTACTTATGGTAAC+AGG | 0.346473 | 1.3:+61918006 | MS.gene07263:CDS |
| ATTTCATTGTCCGTTCTTCC+TGG | 0.346810 | 1.3:-61921406 | None:intergenic |
| GACAATGGAAAATTGTTTGC+TGG | 0.348197 | 1.3:+61921822 | MS.gene07263:CDS |
| GTGAAGCTCCACACTACTTA+TGG | 0.384648 | 1.3:+61917999 | MS.gene07263:CDS |
| AAGACTGTCTCCATCATCAT+TGG | 0.394370 | 1.3:-61921923 | None:intergenic |
| GGACGAACATCCATGATCTT+TGG | 0.402215 | 1.3:-61921499 | None:intergenic |
| AAGTCAAGAGAGAGAAATGA+TGG | 0.429496 | 1.3:+61921870 | MS.gene07263:CDS |
| TGGCAAGTGGCTAGCTATCA+TGG | 0.430055 | 1.3:-61921386 | None:intergenic |
| AATTATGTGACGACATCTTA+GGG | 0.454312 | 1.3:+61921734 | MS.gene07263:CDS |
| AACTATAGAGCCAAAGATCA+TGG | 0.469285 | 1.3:+61921489 | MS.gene07263:CDS |
| GAAAGAACAACCAATGATGA+TGG | 0.472679 | 1.3:+61921913 | MS.gene07263:CDS |
| GAGAGAGAAATGATGGGTGA+TGG | 0.498146 | 1.3:+61921877 | MS.gene07263:CDS |
| ATGTGGTAAAACAAGTCGTT+GGG | 0.503146 | 1.3:+61921534 | MS.gene07263:CDS |
| TTGAAGGATTATTAAGGTGC+GGG | 0.508154 | 1.3:+61917892 | None:intergenic |
| TTGAGAACTGACCTCAAAAG+AGG | 0.515320 | 1.3:+61917945 | MS.gene07263:CDS |
| ATGATAGCTAGCCACTTGCC+AGG | 0.516667 | 1.3:+61921388 | MS.gene07263:CDS |
| GGAAGAGTTGTAGACTAAGA+TGG | 0.530001 | 1.3:+61917913 | MS.gene07263:CDS |
| GATCTTTGGCTCTATAGTTG+TGG | 0.535260 | 1.3:-61921485 | None:intergenic |
| TGCTGAGGTGAGAATTCCAA+TGG | 0.535972 | 1.3:-61921435 | None:intergenic |
| TTACCACATTTACGCTTAGG+AGG | 0.541585 | 1.3:-61921520 | None:intergenic |
| AGGAAACATATCTGCTCAAG+AGG | 0.548913 | 1.3:+61917965 | MS.gene07263:CDS |
| AATGTGGTAAAACAAGTCGT+TGG | 0.554279 | 1.3:+61921533 | MS.gene07263:CDS |
| ATGACATTAATGAAGACAGT+GGG | 0.566755 | 1.3:+61921773 | MS.gene07263:CDS |
| AGAGAAATGATGGGTGATGG+AGG | 0.569392 | 1.3:+61921880 | MS.gene07263:CDS |
| TGTCCGTTCTTCCTGGCAAG+TGG | 0.570131 | 1.3:-61921399 | None:intergenic |
| TAGCCACTTGCCAGGAAGAA+CGG | 0.570228 | 1.3:+61921396 | MS.gene07263:CDS |
| AATTGTTTGCTGGAAACAAG+TGG | 0.575262 | 1.3:+61921832 | MS.gene07263:CDS |
| TTTGAAGGATTATTAAGGTG+CGG | 0.594972 | 1.3:+61917891 | None:intergenic |
| AGTCAAGAGAGAGAAATGAT+GGG | 0.595941 | 1.3:+61921871 | MS.gene07263:CDS |
| CAATCTAGTGAAGGAGTACG+TGG | 0.611516 | 1.3:-61921637 | None:intergenic |
| AAGTACTCATGTCAAGACAA+TGG | 0.614680 | 1.3:+61921807 | MS.gene07263:CDS |
| ATTGTTTGCTGGAAACAAGT+GGG | 0.617843 | 1.3:+61921833 | MS.gene07263:CDS |
| CGTCCTCCTAAGCGTAAATG+TGG | 0.619864 | 1.3:+61921517 | MS.gene07263:CDS |
| ACCTGTTACCATAAGTAGTG+TGG | 0.624649 | 1.3:-61918007 | None:intergenic |
| GAAAATAATTGATGACGTGG+AGG | 0.627952 | 1.3:+61921675 | MS.gene07263:CDS |
| ACAACTTCACAATCTAGTGA+AGG | 0.654135 | 1.3:-61921646 | None:intergenic |
| AGAGAAAATAATTGATGACG+TGG | 0.669316 | 1.3:+61921672 | MS.gene07263:CDS |
| GATGACATTAATGAAGACAG+TGG | 0.688798 | 1.3:+61921772 | MS.gene07263:CDS |
| AGTAGTGTGGAGCTTCACAA+TGG | 0.695094 | 1.3:-61917994 | None:intergenic |
| TGACATTAATGAAGACAGTG+GGG | 0.734598 | 1.3:+61921774 | MS.gene07263:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAATAAAATACTTTAT+AGG | - | chr1.3:61920620-61920639 | None:intergenic | 10.0% |
| !!! | ATAATAGACTTTTTAAATAT+AGG | - | chr1.3:61919764-61919783 | None:intergenic | 10.0% |
| !!! | ATTTACATATTTTAAAGTTA+GGG | + | chr1.3:61918507-61918526 | MS.gene07263:intron | 10.0% |
| !!! | ATTTTCTTTAGTATTAATAA+CGG | - | chr1.3:61921593-61921612 | None:intergenic | 10.0% |
| !!! | CTATAAAGTATTTTATTTTT+TGG | + | chr1.3:61920618-61920637 | MS.gene07263:intron | 10.0% |
| !!! | TATTTTATCTACTTTTAAAT+AGG | + | chr1.3:61919502-61919521 | MS.gene07263:intron | 10.0% |
| !! | AAAAAAACTCTTAAATTTGA+TGG | - | chr1.3:61918201-61918220 | None:intergenic | 15.0% |
| !! | AAAAAACTCTTAAATTTGAT+GGG | - | chr1.3:61918200-61918219 | None:intergenic | 15.0% |
| !! | AAAAATTATTCCAGTTTAAT+TGG | - | chr1.3:61918661-61918680 | None:intergenic | 15.0% |
| !! | AAAATCCTATTTAAGTAAAT+AGG | - | chr1.3:61919918-61919937 | None:intergenic | 15.0% |
| !! | AAACAAAAAAAATCACAAAT+TGG | + | chr1.3:61921194-61921213 | MS.gene07263:intron | 15.0% |
| !! | AAAGAAAAACAAATATCATA+AGG | + | chr1.3:61920673-61920692 | MS.gene07263:intron | 15.0% |
| !! | ATAATATAGTTCAAATACAT+CGG | - | chr1.3:61920461-61920480 | None:intergenic | 15.0% |
| !! | ATTATTACAAATAAAGACAT+AGG | - | chr1.3:61918160-61918179 | None:intergenic | 15.0% |
| !! | TTTATTTGTAATAATGTAGA+TGG | + | chr1.3:61918165-61918184 | MS.gene07263:intron | 15.0% |
| !!! | AAAATTTACCCTTTTTATTT+AGG | + | chr1.3:61918109-61918128 | MS.gene07263:intron | 15.0% |
| !!! | AACAAAATCTTTAAAATAGA+GGG | - | chr1.3:61920353-61920372 | None:intergenic | 15.0% |
| !!! | AACAATTTAGTAGTTTTATT+TGG | - | chr1.3:61918957-61918976 | None:intergenic | 15.0% |
| !!! | AATTATGATTTGAAGTTTAT+TGG | + | chr1.3:61921341-61921360 | MS.gene07263:intron | 15.0% |
| !!! | ATCATTTTGCTAATAAATTT+TGG | + | chr1.3:61921254-61921273 | MS.gene07263:intron | 15.0% |
| !!! | ATTATGATTTGAAGTTTATT+GGG | + | chr1.3:61921342-61921361 | MS.gene07263:intron | 15.0% |
| !!! | CATTTACATATTTTAAAGTT+AGG | + | chr1.3:61918506-61918525 | MS.gene07263:intron | 15.0% |
| !!! | TAATGACTTTTATAATAAGT+AGG | - | chr1.3:61919475-61919494 | None:intergenic | 15.0% |
| !!! | TTTTCCTACTTAAAAAAATA+AGG | - | chr1.3:61920857-61920876 | None:intergenic | 15.0% |
| !!! | TTTTCCTTATTTTTTTAAGT+AGG | + | chr1.3:61920850-61920869 | MS.gene07263:intron | 15.0% |
| !! | AAGAATGATCCTAAATAAAA+AGG | - | chr1.3:61918121-61918140 | None:intergenic | 20.0% |
| !! | AATAAGTACTAGTAATTTCA+AGG | + | chr1.3:61919204-61919223 | MS.gene07263:intron | 20.0% |
| !! | AATATACTAGTATATACACA+AGG | + | chr1.3:61921314-61921333 | MS.gene07263:intron | 20.0% |
| !! | ACAATGAAATTAAAAACCAT+TGG | + | chr1.3:61921419-61921438 | MS.gene07263:CDS | 20.0% |
| !! | AGAATGATCCTAAATAAAAA+GGG | - | chr1.3:61918120-61918139 | None:intergenic | 20.0% |
| !! | ATGTATGTAGTCTTTATTAT+AGG | + | chr1.3:61919589-61919608 | MS.gene07263:intron | 20.0% |
| !! | TCTTTATAATGTCCTAATAA+AGG | + | chr1.3:61919263-61919282 | MS.gene07263:intron | 20.0% |
| !! | TTGAATAAGTAGAAAATCTA+GGG | - | chr1.3:61920978-61920997 | None:intergenic | 20.0% |
| !!! | AATGACAAAGTTTTTTTTGA+AGG | - | chr1.3:61918315-61918334 | None:intergenic | 20.0% |
| !!! | AATTCTACACGTTATTATTT+TGG | - | chr1.3:61918865-61918884 | None:intergenic | 20.0% |
| !!! | ATTCTACACGTTATTATTTT+GGG | - | chr1.3:61918864-61918883 | None:intergenic | 20.0% |
| !!! | ATTTTAGGTACAATAATAGA+GGG | - | chr1.3:61918787-61918806 | None:intergenic | 20.0% |
| !!! | CAACAAAATCTTTAAAATAG+AGG | - | chr1.3:61920354-61920373 | None:intergenic | 20.0% |
| !!! | CTAGTACTTATTATTTTTTG+AGG | - | chr1.3:61919196-61919215 | None:intergenic | 20.0% |
| !!! | CTCTATTTTAAAGATTTTGT+TGG | + | chr1.3:61920352-61920371 | MS.gene07263:intron | 20.0% |
| !!! | CTTTGTCATTAATTATTTCT+TGG | + | chr1.3:61918325-61918344 | MS.gene07263:intron | 20.0% |
| !!! | CTTTTTAAATATAGGCTTTA+AGG | - | chr1.3:61919756-61919775 | None:intergenic | 20.0% |
| !!! | TAATAAATTTTGGCATAAAG+TGG | + | chr1.3:61921264-61921283 | MS.gene07263:intron | 20.0% |
| !!! | TAGTAGTACGTATTATTTTT+TGG | + | chr1.3:61921167-61921186 | MS.gene07263:intron | 20.0% |
| !!! | TATTTTAGGTACAATAATAG+AGG | - | chr1.3:61918788-61918807 | None:intergenic | 20.0% |
| !!! | TTTTAATAACATGCATAAAC+AGG | + | chr1.3:61919847-61919866 | MS.gene07263:intron | 20.0% |
| !!! | TTTTTCTTACGAAAAAACAA+AGG | - | chr1.3:61918711-61918730 | None:intergenic | 20.0% |
| ! | AAATATGTAAATGAAGAGTG+TGG | - | chr1.3:61918499-61918518 | None:intergenic | 25.0% |
| ! | AACTACACGTTATTAATTAG+TGG | - | chr1.3:61918832-61918851 | None:intergenic | 25.0% |
| ! | AATATTTGATAGAAGAACAC+GGG | - | chr1.3:61920414-61920433 | None:intergenic | 25.0% |
| ! | AATTGAATGAACCTAGAAAT+TGG | - | chr1.3:61919565-61919584 | None:intergenic | 25.0% |
| ! | AGGAAAATGCTAATTACTTA+AGG | - | chr1.3:61920837-61920856 | None:intergenic | 25.0% |
| ! | AGGACATTATAAAGAAAATC+CGG | - | chr1.3:61919258-61919277 | None:intergenic | 25.0% |
| ! | ATACTTTATAGGAAAACAGT+TGG | - | chr1.3:61920609-61920628 | None:intergenic | 25.0% |
| ! | CTTGACCTATTTACTTAAAT+AGG | + | chr1.3:61919910-61919929 | MS.gene07263:intron | 25.0% |
| ! | GAATATTTGATAGAAGAACA+CGG | - | chr1.3:61920415-61920434 | None:intergenic | 25.0% |
| ! | GTTGAATAAGTAGAAAATCT+AGG | - | chr1.3:61920979-61920998 | None:intergenic | 25.0% |
| ! | TAAAAGCCTATTTCACTATA+AGG | + | chr1.3:61919730-61919749 | MS.gene07263:intron | 25.0% |
| ! | TAAGCAAAAATCCAATTTCT+AGG | + | chr1.3:61919551-61919570 | MS.gene07263:intron | 25.0% |
| ! | TAATGTTTCACCAAATTGTT+AGG | - | chr1.3:61921133-61921152 | None:intergenic | 25.0% |
| ! | TACTTATTCAACGATACAAA+CGG | + | chr1.3:61920987-61921006 | MS.gene07263:intron | 25.0% |
| ! | TTCTTAAGAAACATTGACAT+TGG | + | chr1.3:61920542-61920561 | MS.gene07263:intron | 25.0% |
| !! | AAATTTAAAATACTCGTGTC+AGG | + | chr1.3:61918623-61918642 | MS.gene07263:intron | 25.0% |
| !! | ACACTACACGTTATTATTTT+AGG | - | chr1.3:61918802-61918821 | None:intergenic | 25.0% |
| !! | ATTTGGTGAAACATTAAATG+AGG | + | chr1.3:61921137-61921156 | MS.gene07263:intron | 25.0% |
| !! | GTGGAATATTAATTTTGTGT+TGG | - | chr1.3:61918452-61918471 | None:intergenic | 25.0% |
| !! | TATAGTGAAATAGGCTTTTA+AGG | - | chr1.3:61919730-61919749 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | + | chr1.3:61919650-61919669 | MS.gene07263:intron | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | - | chr1.3:61919669-61919650 | None:intergenic | 25.0% |
| !!! | AAAATCTTTAAAATAGAGGG+AGG | - | chr1.3:61920350-61920369 | None:intergenic | 25.0% |
| !!! | ACAAATTGGTCTTTGAATAT+GGG | + | chr1.3:61921208-61921227 | MS.gene07263:intron | 25.0% |
| !!! | ACTTTAGAATTGCTTTTTCT+AGG | + | chr1.3:61918390-61918409 | MS.gene07263:intron | 25.0% |
| !!! | TATGTTTTGGAATAATTCGT+GGG | + | chr1.3:61918749-61918768 | MS.gene07263:intron | 25.0% |
| !!! | TCGGTTGGTAATATAATATA+CGG | + | chr1.3:61920937-61920956 | MS.gene07263:intron | 25.0% |
| !!! | TGAGTAGTACTATTTTTTGA+TGG | + | chr1.3:61921032-61921051 | MS.gene07263:intron | 25.0% |
| !!! | TTTAAGAAAAGTGCTAAAGT+TGG | - | chr1.3:61918087-61918106 | None:intergenic | 25.0% |
| !!! | TTTAGTAGTTTTATTTGGAG+AGG | - | chr1.3:61918952-61918971 | None:intergenic | 25.0% |
| AAAATGAATAAGAGATCACG+TGG | - | chr1.3:61918471-61918490 | None:intergenic | 30.0% | |
| AACGTGCACAAAATGATAAT+TGG | + | chr1.3:61920059-61920078 | MS.gene07263:intron | 30.0% | |
| AATGCTTGTCTACCATTATA+AGG | + | chr1.3:61919704-61919723 | MS.gene07263:intron | 30.0% | |
| AATTATGTGACGACATCTTA+GGG | + | chr1.3:61921734-61921753 | MS.gene07263:CDS | 30.0% | |
| ACGTGCACAAAATGATAATT+GGG | + | chr1.3:61920060-61920079 | MS.gene07263:intron | 30.0% | |
| ACGTTTATCAATTCATCAGT+AGG | - | chr1.3:61920044-61920063 | None:intergenic | 30.0% | |
| ATGACATTAATGAAGACAGT+GGG | + | chr1.3:61921773-61921792 | MS.gene07263:CDS | 30.0% | |
| CACGAATTATTCCAAAACAT+AGG | - | chr1.3:61918750-61918769 | None:intergenic | 30.0% | |
| CGTTTATCAATTCATCAGTA+GGG | - | chr1.3:61920043-61920062 | None:intergenic | 30.0% | |
| GACAAGCATTACAATGAAAT+AGG | - | chr1.3:61919694-61919713 | None:intergenic | 30.0% | |
| GTCATTGTTTCCAATTAAAC+TGG | + | chr1.3:61918648-61918667 | MS.gene07263:intron | 30.0% | |
| TAAGCAAAAATCCACTTTCT+AGG | - | chr1.3:61919640-61919659 | None:intergenic | 30.0% | |
| TAAGTAAATAGGTCAAGCTT+AGG | - | chr1.3:61919907-61919926 | None:intergenic | 30.0% | |
| TAATAAGTAGGCCTGTAAAT+AGG | - | chr1.3:61919463-61919482 | None:intergenic | 30.0% | |
| TATTGAATGAACCTAGAAAG+TGG | + | chr1.3:61919626-61919645 | MS.gene07263:intron | 30.0% | |
| TTATTAAAAAGGCTAGGCTT+AGG | - | chr1.3:61919948-61919967 | None:intergenic | 30.0% | |
| ! | ATTTGAGTGACTTGAAGTTT+TGG | - | chr1.3:61920219-61920238 | None:intergenic | 30.0% |
| ! | TTAAGGCCTTATAGTGAAAT+AGG | - | chr1.3:61919739-61919758 | None:intergenic | 30.0% |
| ! | TTTAAAGTGCCCAAAAAAGA+CGG | - | chr1.3:61921075-61921094 | None:intergenic | 30.0% |
| ! | TTTGGGCACTTTAAAAATCA+TGG | + | chr1.3:61921080-61921099 | MS.gene07263:intron | 30.0% |
| !! | AACAGTAGTACTGATGAATA+GGG | + | chr1.3:61919288-61919307 | MS.gene07263:intron | 30.0% |
| !! | AGAGAAAATAATTGATGACG+TGG | + | chr1.3:61921672-61921691 | MS.gene07263:CDS | 30.0% |
| !! | CACAAATTGGTCTTTGAATA+TGG | + | chr1.3:61921207-61921226 | MS.gene07263:intron | 30.0% |
| !! | TAAATTTTGGCATAAAGTGG+TGG | + | chr1.3:61921267-61921286 | MS.gene07263:intron | 30.0% |
| !!! | AGGCTTACAATTTTTTTCGT+AGG | - | chr1.3:61919361-61919380 | None:intergenic | 30.0% |
| !!! | CTATGTTTTGGAATAATTCG+TGG | + | chr1.3:61918748-61918767 | MS.gene07263:intron | 30.0% |
| !!! | TACAATTTTTTTCGTAGGTC+AGG | - | chr1.3:61919356-61919375 | None:intergenic | 30.0% |
| AAAAATTGTAAGCCTGAGTC+TGG | + | chr1.3:61919366-61919385 | MS.gene07263:intron | 35.0% | |
| AAAAGCCTACGAAACCTAAT+AGG | - | chr1.3:61919877-61919896 | None:intergenic | 35.0% | |
| AACTATAGAGCCAAAGATCA+TGG | + | chr1.3:61921489-61921508 | MS.gene07263:CDS | 35.0% | |
| AAGTACTCATGTCAAGACAA+TGG | + | chr1.3:61921807-61921826 | MS.gene07263:CDS | 35.0% | |
| AAGTCAAGAGAGAGAAATGA+TGG | + | chr1.3:61921870-61921889 | MS.gene07263:CDS | 35.0% | |
| AATAACATGCATAAACAGGC+CGG | + | chr1.3:61919851-61919870 | MS.gene07263:intron | 35.0% | |
| AATGTGGTAAAACAAGTCGT+TGG | + | chr1.3:61921533-61921552 | MS.gene07263:CDS | 35.0% | |
| ACAACTTCACAATCTAGTGA+AGG | - | chr1.3:61921649-61921668 | None:intergenic | 35.0% | |
| ACCTGGCCTGTTTATTAAAA+AGG | - | chr1.3:61919959-61919978 | None:intergenic | 35.0% | |
| AGACATAGGCTAAATATACG+TGG | - | chr1.3:61918146-61918165 | None:intergenic | 35.0% | |
| AGTCAAGAGAGAGAAATGAT+GGG | + | chr1.3:61921871-61921890 | MS.gene07263:CDS | 35.0% | |
| AGTTGAATACTATTGTCAGC+AGG | - | chr1.3:61920256-61920275 | None:intergenic | 35.0% | |
| ATCAATTCATCAGTAGGGTT+GGG | - | chr1.3:61920038-61920057 | None:intergenic | 35.0% | |
| ATGTGGTAAAACAAGTCGTT+GGG | + | chr1.3:61921534-61921553 | MS.gene07263:CDS | 35.0% | |
| ATTGACATTGGCACTATACT+TGG | + | chr1.3:61920554-61920573 | MS.gene07263:intron | 35.0% | |
| CAAAACAATAGGCCTATGAA+AGG | - | chr1.3:61919399-61919418 | None:intergenic | 35.0% | |
| CCTGCAAACTATTCTTATAC+TGG | + | chr1.3:61919125-61919144 | MS.gene07263:intron | 35.0% | |
| CGTGCACAAAATGATAATTG+GGG | + | chr1.3:61920061-61920080 | MS.gene07263:intron | 35.0% | |
| CTATTCATCAGTACTACTGT+TGG | - | chr1.3:61919289-61919308 | None:intergenic | 35.0% | |
| GAAAGAACAACCAATGATGA+TGG | + | chr1.3:61921913-61921932 | MS.gene07263:CDS | 35.0% | |
| GAATTATGTGACGACATCTT+AGG | + | chr1.3:61921733-61921752 | MS.gene07263:CDS | 35.0% | |
| GACAATGGAAAATTGTTTGC+TGG | + | chr1.3:61921822-61921841 | MS.gene07263:CDS | 35.0% | |
| GACATAGGCTAAATATACGT+GGG | - | chr1.3:61918145-61918164 | None:intergenic | 35.0% | |
| GATGACATTAATGAAGACAG+TGG | + | chr1.3:61921772-61921791 | MS.gene07263:CDS | 35.0% | |
| GCCTGTTTATTAAAAAGGCT+AGG | - | chr1.3:61919954-61919973 | None:intergenic | 35.0% | |
| TAGGTACAATAATAGAGGGT+GGG | - | chr1.3:61918783-61918802 | None:intergenic | 35.0% | |
| TATCAATTCATCAGTAGGGT+TGG | - | chr1.3:61920039-61920058 | None:intergenic | 35.0% | |
| TGACATTAATGAAGACAGTG+GGG | + | chr1.3:61921774-61921793 | MS.gene07263:CDS | 35.0% | |
| TTAGGTACAATAATAGAGGG+TGG | - | chr1.3:61918784-61918803 | None:intergenic | 35.0% | |
| ! | AACTGTAGATTTTTCTGCTG+AGG | - | chr1.3:61921453-61921472 | None:intergenic | 35.0% |
| ! | AATTGTTTGCTGGAAACAAG+TGG | + | chr1.3:61921832-61921851 | MS.gene07263:CDS | 35.0% |
| ! | ATTGGGTTTGTGTGATTTTC+AGG | + | chr1.3:61921359-61921378 | MS.gene07263:intron | 35.0% |
| ! | ATTGTTTGCTGGAAACAAGT+GGG | + | chr1.3:61921833-61921852 | MS.gene07263:CDS | 35.0% |
| ! | CAGATATGTTTCCTCTTTTG+AGG | - | chr1.3:61917959-61917978 | None:intergenic | 35.0% |
| ! | CCAGTATAAGAATAGTTTGC+AGG | - | chr1.3:61919128-61919147 | None:intergenic | 35.0% |
| ! | GTAGCTTTTGTTCTTCTTCA+TGG | - | chr1.3:61921560-61921579 | None:intergenic | 35.0% |
| ! | GTTTTACCACATTTACGCTT+AGG | - | chr1.3:61921526-61921545 | None:intergenic | 35.0% |
| ! | TATCGTACGTACCTATGTTT+TGG | + | chr1.3:61918736-61918755 | MS.gene07263:intron | 35.0% |
| ! | TTAAAGTGCCCAAAAAAGAC+GGG | - | chr1.3:61921074-61921093 | None:intergenic | 35.0% |
| ! | TTGGTCTTTGAATATGGGTT+TGG | + | chr1.3:61921213-61921232 | MS.gene07263:intron | 35.0% |
| ! | TTTCTGACATTCGTTTGTTG+AGG | - | chr1.3:61919085-61919104 | None:intergenic | 35.0% |
| !! | AATAATAGAGGGTGGGTTTT+AGG | - | chr1.3:61918776-61918795 | None:intergenic | 35.0% |
| !! | ACTTGAAGTTTTGGTGACTT+TGG | - | chr1.3:61920210-61920229 | None:intergenic | 35.0% |
| !! | ATAATAGAGGGTGGGTTTTA+GGG | - | chr1.3:61918775-61918794 | None:intergenic | 35.0% |
| !! | CAACAGTAGTACTGATGAAT+AGG | + | chr1.3:61919287-61919306 | MS.gene07263:intron | 35.0% |
| !! | GAAAATAATTGATGACGTGG+AGG | + | chr1.3:61921675-61921694 | MS.gene07263:CDS | 35.0% |
| !! | GCCTAGCCTTTTTAATAAAC+AGG | + | chr1.3:61919950-61919969 | MS.gene07263:intron | 35.0% |
| !! | TACTACTGTTGGCCTTTATT+AGG | - | chr1.3:61919278-61919297 | None:intergenic | 35.0% |
| !! | TAGTACTGATGAATAGGGTT+GGG | + | chr1.3:61919293-61919312 | MS.gene07263:intron | 35.0% |
| !!! | AGGCTTTTAAGGCCTTATAA+TGG | - | chr1.3:61919719-61919738 | None:intergenic | 35.0% |
| !!! | TTGCTTTTTCTAGGTTCTAC+TGG | + | chr1.3:61918399-61918418 | MS.gene07263:intron | 35.0% |
| AACATAGGTACGTACGATAC+TGG | - | chr1.3:61918735-61918754 | None:intergenic | 40.0% | |
| AATAGGCTAAATACACCCTC+CGG | + | chr1.3:61919519-61919538 | MS.gene07263:intron | 40.0% | |
| ACCTGTTACCATAAGTAGTG+TGG | - | chr1.3:61918010-61918029 | None:intergenic | 40.0% | |
| AGGAAACATATCTGCTCAAG+AGG | + | chr1.3:61917965-61917984 | MS.gene07263:CDS | 40.0% | |
| ATAGGCCTATGAAAGGCTAT+AGG | - | chr1.3:61919392-61919411 | None:intergenic | 40.0% | |
| ATTTCATTGTCCGTTCTTCC+TGG | - | chr1.3:61921409-61921428 | None:intergenic | 40.0% | |
| CAAATTTGAGAGTTGACCGT+AGG | + | chr1.3:61918236-61918255 | MS.gene07263:intron | 40.0% | |
| CACCAAATTGTTAGGCATGT+GGG | - | chr1.3:61921125-61921144 | None:intergenic | 40.0% | |
| CCACACCAAAAAGTTATTCC+TGG | + | chr1.3:61919052-61919071 | MS.gene07263:intron | 40.0% | |
| GCCTGACATATCTAAAAGTC+TGG | + | chr1.3:61919424-61919443 | MS.gene07263:intron | 40.0% | |
| GGAAGAGTTGTAGACTAAGA+TGG | + | chr1.3:61917913-61917932 | MS.gene07263:CDS | 40.0% | |
| GTACGTGGAATTTGAACTTC+TGG | - | chr1.3:61921625-61921644 | None:intergenic | 40.0% | |
| GTAGTTACGTTAGCATAGCT+CGG | + | chr1.3:61920918-61920937 | MS.gene07263:intron | 40.0% | |
| TAGATCGAAACAAGACCACT+AGG | - | chr1.3:61920096-61920115 | None:intergenic | 40.0% | |
| TAGCCTGAAAGCCTATTTAC+AGG | + | chr1.3:61919449-61919468 | MS.gene07263:intron | 40.0% | |
| TCACCAAATTGTTAGGCATG+TGG | - | chr1.3:61921126-61921145 | None:intergenic | 40.0% | |
| TCCACACTACTTATGGTAAC+AGG | + | chr1.3:61918006-61918025 | MS.gene07263:CDS | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | + | chr1.3:61919654-61919673 | MS.gene07263:intron | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | - | chr1.3:61919673-61919654 | None:intergenic | 40.0% | |
| TGTAAATAGGCTTTCAGGCT+AGG | - | chr1.3:61919450-61919469 | None:intergenic | 40.0% | |
| TTACCACATTTACGCTTAGG+AGG | - | chr1.3:61921523-61921542 | None:intergenic | 40.0% | |
| TTGAGAACTGACCTCAAAAG+AGG | + | chr1.3:61917945-61917964 | MS.gene07263:CDS | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | + | chr1.3:61919653-61919672 | MS.gene07263:intron | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | - | chr1.3:61919672-61919653 | None:intergenic | 40.0% | |
| TTGGGGTATATTTGTCCTAG+TGG | + | chr1.3:61920078-61920097 | MS.gene07263:intron | 40.0% | |
| TTTGGCATAAAGTGGTGGTA+CGG | + | chr1.3:61921272-61921291 | MS.gene07263:intron | 40.0% | |
| ! | ACTTTTAGATATGTCAGGCC+AGG | - | chr1.3:61919423-61919442 | None:intergenic | 40.0% |
| ! | CGGATCCAGGAATAACTTTT+TGG | - | chr1.3:61919060-61919079 | None:intergenic | 40.0% |
| ! | GCCAGACTTTTAGATATGTC+AGG | - | chr1.3:61919428-61919447 | None:intergenic | 40.0% |
| ! | GCCTTTTTAATAAACAGGCC+AGG | + | chr1.3:61919955-61919974 | MS.gene07263:intron | 40.0% |
| ! | TAAAGTGCCCAAAAAAGACG+GGG | - | chr1.3:61921073-61921092 | None:intergenic | 40.0% |
| !! | CCAGGAATAACTTTTTGGTG+TGG | - | chr1.3:61919055-61919074 | None:intergenic | 40.0% |
| !! | GATCTTTGGCTCTATAGTTG+TGG | - | chr1.3:61921488-61921507 | None:intergenic | 40.0% |
| !! | GTAGTACTGATGAATAGGGT+TGG | + | chr1.3:61919292-61919311 | MS.gene07263:intron | 40.0% |
| !! | TAACCAGTTATTTCTGCTGC+CGG | + | chr1.3:61919236-61919255 | MS.gene07263:intron | 40.0% |
| !!! | AAAGTTGTCCCCGTCTTTTT+TGG | + | chr1.3:61921062-61921081 | MS.gene07263:intron | 40.0% |
| !!! | AAGTTGTCCCCGTCTTTTTT+GGG | + | chr1.3:61921063-61921082 | MS.gene07263:intron | 40.0% |
| !!! | ATAGGCCTATTGTTTTGACC+TGG | + | chr1.3:61919402-61919421 | MS.gene07263:intron | 40.0% |
| !!! | TTTTTTTCGTAGGTCAGGCT+CGG | - | chr1.3:61919351-61919370 | None:intergenic | 40.0% |
| AATAGGGTTGGGAATATGCC+AGG | + | chr1.3:61919304-61919323 | MS.gene07263:intron | 45.0% | |
| AATCCGGCAGCAGAAATAAC+TGG | - | chr1.3:61919242-61919261 | None:intergenic | 45.0% | |
| ACTATTGTCAGCAGGACGAA+TGG | - | chr1.3:61920248-61920267 | None:intergenic | 45.0% | |
| AGGCCTGTAAATAGGCTTTC+AGG | - | chr1.3:61919455-61919474 | None:intergenic | 45.0% | |
| AGTAGTGTGGAGCTTCACAA+TGG | - | chr1.3:61917997-61918016 | None:intergenic | 45.0% | |
| CTATTGTCAGCAGGACGAAT+GGG | - | chr1.3:61920247-61920266 | None:intergenic | 45.0% | |
| GCTTAAACAAGCCAGATCGT+AGG | + | chr1.3:61919987-61920006 | MS.gene07263:intron | 45.0% | |
| GGACGAACATCCATGATCTT+TGG | - | chr1.3:61921502-61921521 | None:intergenic | 45.0% | |
| GGTTAAAAGTGAGAGCTTGC+CGG | + | chr1.3:61918528-61918547 | MS.gene07263:intron | 45.0% | |
| GTGAAGCTCCACACTACTTA+TGG | + | chr1.3:61917999-61918018 | MS.gene07263:CDS | 45.0% | |
| TCAGGCCAGGTCAAAACAAT+AGG | - | chr1.3:61919410-61919429 | None:intergenic | 45.0% | |
| TCATCAGTAGGGTTGGGAAT+AGG | - | chr1.3:61920032-61920051 | None:intergenic | 45.0% | |
| TCTGGCCTATAGCCTTTCAT+AGG | + | chr1.3:61919384-61919403 | MS.gene07263:intron | 45.0% | |
| TGCCCACATGCCTAACAATT+TGG | + | chr1.3:61921120-61921139 | MS.gene07263:intron | 45.0% | |
| TGCTGAGGTGAGAATTCCAA+TGG | - | chr1.3:61921438-61921457 | None:intergenic | 45.0% | |
| TTACGTTAGCATAGCTCGGT+TGG | + | chr1.3:61920922-61920941 | MS.gene07263:intron | 45.0% | |
| ! | CAATCTAGTGAAGGAGTACG+TGG | - | chr1.3:61921640-61921659 | None:intergenic | 45.0% |
| ! | CCACGCATTTTGCAAGTGAT+GGG | - | chr1.3:61918593-61918612 | None:intergenic | 45.0% |
| ! | GACATTCGTTTGTTGAGGAG+CGG | - | chr1.3:61919080-61919099 | None:intergenic | 45.0% |
| !! | CAACCAATGATGATGGAGAC+AGG | + | chr1.3:61921920-61921939 | MS.gene07263:CDS | 45.0% |
| !! | GGGTTTGTGTGATTTTCAGG+TGG | + | chr1.3:61921362-61921381 | MS.gene07263:intron | 45.0% |
| !!! | TTTTTTCGTAGGTCAGGCTC+GGG | - | chr1.3:61919350-61919369 | None:intergenic | 45.0% |
| !! | AAATATATATTAATTATCAA+TGG | + | chr1.3:61920481-61920500 | MS.gene07263:intron | 5.0% |
| AAAGGCTATAGGCCAGACTC+AGG | - | chr1.3:61919381-61919400 | None:intergenic | 50.0% | |
| AACAGCTTCCCCGTAGTATC+CGG | - | chr1.3:61918550-61918569 | None:intergenic | 50.0% | |
| AGGTCAGGCCAGACTTTGAT+AGG | + | chr1.3:61919324-61919343 | MS.gene07263:intron | 50.0% | |
| ATGATAGCTAGCCACTTGCC+AGG | + | chr1.3:61921388-61921407 | MS.gene07263:CDS | 50.0% | |
| CATAAACAGGCCGGCCTATT+AGG | + | chr1.3:61919860-61919879 | MS.gene07263:intron | 50.0% | |
| CATGCCATACCCACATCCTA+CGG | - | chr1.3:61918255-61918274 | None:intergenic | 50.0% | |
| CCCATCACTTGCAAAATGCG+TGG | + | chr1.3:61918590-61918609 | MS.gene07263:intron | 50.0% | |
| CGTCCTCCTAAGCGTAAATG+TGG | + | chr1.3:61921517-61921536 | MS.gene07263:CDS | 50.0% | |
| GAGAGTTGACCGTAGGATGT+GGG | + | chr1.3:61918243-61918262 | MS.gene07263:intron | 50.0% | |
| GCCTACGAAACCTAATAGGC+CGG | - | chr1.3:61919873-61919892 | None:intergenic | 50.0% | |
| TAGCCACTTGCCAGGAAGAA+CGG | + | chr1.3:61921396-61921415 | MS.gene07263:CDS | 50.0% | |
| TATCAAAGTCTGGCCTGACC+TGG | - | chr1.3:61919325-61919344 | None:intergenic | 50.0% | |
| TGAGAGCTTGCCGGATACTA+CGG | + | chr1.3:61918537-61918556 | MS.gene07263:intron | 50.0% | |
| TGAGAGTTGACCGTAGGATG+TGG | + | chr1.3:61918242-61918261 | MS.gene07263:intron | 50.0% | |
| TGTTTAAGCCTGGTCTGACC+TGG | - | chr1.3:61919976-61919995 | None:intergenic | 50.0% | |
| TTGACCGTAGGATGTGGGTA+TGG | + | chr1.3:61918248-61918267 | MS.gene07263:intron | 50.0% | |
| ! | GCCACGCATTTTGCAAGTGA+TGG | - | chr1.3:61918594-61918613 | None:intergenic | 50.0% |
| ! | TATTAGTGACCGGAGGGTGT+AGG | + | chr1.3:61919660-61919679 | MS.gene07263:intron | 50.0% |
| ! | TGGCAAGTGGCTAGCTATCA+TGG | - | chr1.3:61921389-61921408 | None:intergenic | 50.0% |
| !! | CGATCTGGCTTGTTTAAGCC+TGG | - | chr1.3:61919986-61920005 | None:intergenic | 50.0% |
| !! | GCTTTAAAGCCTACACCCTC+CGG | - | chr1.3:61919672-61919691 | None:intergenic | 50.0% |
| AGAGCTTGCCGGATACTACG+GGG | + | chr1.3:61918539-61918558 | MS.gene07263:intron | 55.0% | |
| CGTAGGATGTGGGTATGGCA+TGG | + | chr1.3:61918253-61918272 | MS.gene07263:intron | 55.0% | |
| GAGAGCTTGCCGGATACTAC+GGG | + | chr1.3:61918538-61918557 | MS.gene07263:intron | 55.0% | |
| GCCGGCCTATTAGGTTTCGT+AGG | + | chr1.3:61919869-61919888 | MS.gene07263:intron | 55.0% | |
| GGTTGGGAATATGCCAGGTC+AGG | + | chr1.3:61919309-61919328 | MS.gene07263:intron | 55.0% | |
| TAAACAGGCCAGGTCAGACC+AGG | + | chr1.3:61919965-61919984 | MS.gene07263:intron | 55.0% | |
| TGTCCGTTCTTCCTGGCAAG+TGG | - | chr1.3:61921402-61921421 | None:intergenic | 55.0% | |
| ! | GTTTGTTGAGGAGCGGATCC+AGG | - | chr1.3:61919073-61919092 | None:intergenic | 55.0% |
| AATAGGCCAGACCGGCCTAC+AGG | - | chr1.3:61920015-61920034 | None:intergenic | 60.0% | |
| ATAGGCCAGACCGGCCTACA+GGG | - | chr1.3:61920014-61920033 | None:intergenic | 60.0% | |
| GGCTCGGGCCTATCAAAGTC+TGG | - | chr1.3:61919335-61919354 | None:intergenic | 60.0% | |
| GGGTTGGGAATAGGCCAGAC+CGG | - | chr1.3:61920023-61920042 | None:intergenic | 60.0% | |
| GATCGTAGGCCCCTGTAGGC+CGG | + | chr1.3:61920001-61920020 | MS.gene07263:intron | 65.0% | |
| GCCAGATCGTAGGCCCCTGT+AGG | + | chr1.3:61919997-61920016 | MS.gene07263:intron | 65.0% | |
| GCCTACAGGGGCCTACGATC+TGG | - | chr1.3:61920001-61920020 | None:intergenic | 65.0% | |
| TAGGCCAGACCGGCCTACAG+GGG | - | chr1.3:61920013-61920032 | None:intergenic | 65.0% | |
| TAGGCCCCTGTAGGCCGGTC+TGG | + | chr1.3:61920006-61920025 | MS.gene07263:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 61917898 | 61921940 | 61917898 | ID=MS.gene07263 |
| chr1.3 | mRNA | 61917898 | 61921940 | 61917898 | ID=MS.gene07263.t1;Parent=MS.gene07263 |
| chr1.3 | exon | 61917898 | 61918027 | 61917898 | ID=MS.gene07263.t1.exon1;Parent=MS.gene07263.t1 |
| chr1.3 | CDS | 61917898 | 61918027 | 61917898 | ID=cds.MS.gene07263.t1;Parent=MS.gene07263.t1 |
| chr1.3 | exon | 61921381 | 61921940 | 61921381 | ID=MS.gene07263.t1.exon2;Parent=MS.gene07263.t1 |
| chr1.3 | CDS | 61921381 | 61921940 | 61921381 | ID=cds.MS.gene07263.t1;Parent=MS.gene07263.t1 |
| Gene Sequence |
| Protein sequence |
