AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07346


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 96 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGCTCCTGAGCTTATATT+TGG 0.244837 1.2:+65086204 MS.gene07346:CDS
CCATTTGGTAAGCGGGTATT+TGG 0.267776 1.2:-65087343 None:intergenic
CACTTTATTTCTTCCCTTGT+TGG 0.277812 1.2:-65086672 None:intergenic
GCGGGTGTAGCACCTGCTTC+TGG 0.279941 1.2:+65084418 None:intergenic
ACAGCTGTGCTTCGAAGATT+TGG 0.289263 1.2:-65086905 None:intergenic
ACTTTATTTCTTCCCTTGTT+GGG 0.299296 1.2:-65086671 None:intergenic
CATAAAACCTCAAAATTTAC+TGG 0.302940 1.2:+65085823 MS.gene07346:CDS
ATTGCAAACAATGCGCCTTC+TGG 0.303407 1.2:+65085447 MS.gene07346:CDS
AATTTGAACTCAGTGTAATT+AGG 0.303776 1.2:-65086702 None:intergenic
TGCTTCAAAGTTACAACATT+GGG 0.306524 1.2:-65085475 None:intergenic
GATTCTTGGCATGAGAATTA+AGG 0.310437 1.2:+65084495 MS.gene07346:CDS
GGCGCATTGTTTGCAATTCC+CGG 0.336137 1.2:-65085441 None:intergenic
AGCTGAAGCTGTGTGACTTT+GGG 0.340074 1.2:+65086030 MS.gene07346:CDS
GTGATTTGACACAGAGCTTA+AGG 0.345167 1.2:+65087478 MS.gene07346:intron
TTGGCTTTGAAGTTAAATAA+AGG 0.346030 1.2:-65087379 None:intergenic
AAGTTACCTGATGAGATTCT+TGG 0.357811 1.2:+65084481 MS.gene07346:CDS
GCCATTGACATTTGGTCAGC+TGG 0.375576 1.2:+65086246 MS.gene07346:CDS
CAGCTGAAGCTGTGTGACTT+TGG 0.382183 1.2:+65086029 MS.gene07346:CDS
CAACAGAAACGGACCTGCTT+TGG 0.382992 1.2:-65085099 None:intergenic
GGAGGAAGATGTCGCCCATT+TGG 0.410357 1.2:-65087358 None:intergenic
AAGACAAGAGGTATAAGAAC+CGG 0.414384 1.2:+65085422 MS.gene07346:CDS
CCAAATACCCGCTTACCAAA+TGG 0.415209 1.2:+65087343 MS.gene07346:CDS
TGATTTGACACAGAGCTTAA+GGG 0.418538 1.2:+65087479 MS.gene07346:intron
GGCTGAGCGTGCTGTTGGAC+AGG 0.422030 1.2:+65085231 MS.gene07346:CDS
ACACCTCAGCCATTGACATT+TGG 0.424221 1.2:+65086238 MS.gene07346:CDS
GAGACGAGATCCACAGCTTC+CGG 0.427305 1.2:-65086863 None:intergenic
ATGGAAGCACATGTGGTAGA+TGG 0.431808 1.2:+65085018 MS.gene07346:CDS
GAACAGATGTAAGATATGTT+TGG 0.438593 1.2:-65086171 None:intergenic
ATGGATGAGCTTTGATTTGT+GGG 0.440766 1.2:-65086725 None:intergenic
TGAAATGTAGTTGGAGGCTC+TGG 0.441145 1.2:+65087291 MS.gene07346:intron
TGCTGAAATGCTGGTGAAGT+TGG 0.441185 1.2:+65087508 MS.gene07346:CDS
CGTAAAACTTTATTCTTACC+AGG 0.443339 1.2:+65085624 MS.gene07346:CDS
CATGGATGAGCTTTGATTTG+TGG 0.448824 1.2:-65086726 None:intergenic
CATGAGAATTAAGGATGATA+AGG 0.452401 1.2:+65084504 MS.gene07346:CDS
GCTGTTGGACAGGGATCATT+TGG 0.460113 1.2:+65085241 MS.gene07346:CDS
ACTGTGTTGGAGTGTCTCAT+AGG 0.462734 1.2:+65085798 MS.gene07346:CDS
AGAAACGGACCTGCTTTGGC+TGG 0.463450 1.2:-65085095 None:intergenic
TGGTCAGCTGGCTGTGTGCT+TGG 0.464944 1.2:+65086258 MS.gene07346:CDS
CAAATACCCGCTTACCAAAT+GGG 0.467635 1.2:+65087344 MS.gene07346:CDS
CTTTGGGAGTGCAAAAGTCT+TGG 0.495013 1.2:+65086046 MS.gene07346:CDS
CTTTATTTCTTCCCTTGTTG+GGG 0.495899 1.2:-65086670 None:intergenic
ATCACGCAATTCATCAAAGA+AGG 0.499103 1.2:-65087320 None:intergenic
CCTCTCTTTCCCGGTGCGAG+TGG 0.500696 1.2:+65086391 MS.gene07346:CDS
ATCACACGATGGACAGTCTC+AGG 0.502252 1.2:-65085559 None:intergenic
CACTGCTTTCTTGCGTGAGA+CGG 0.509743 1.2:-65087533 None:intergenic
TATTGTGCAGGCTAAGTGCT+TGG 0.509852 1.2:+65085363 MS.gene07346:intron
CTCATGCCAAGAATCTCATC+AGG 0.511640 1.2:-65084487 None:intergenic
AGTCACACAGCTTCAGCTGA+TGG 0.511702 1.2:-65086025 None:intergenic
ACATCTACTATTCCAGAAGC+AGG 0.513318 1.2:-65084430 None:intergenic
GGGAGTGCCTGCTGAAATGC+TGG 0.520269 1.2:+65087499 MS.gene07346:CDS
CCTTGATAATTTCAACGAGC+TGG 0.522778 1.2:-65086420 None:intergenic
GCTTATATTCATAACTGTGT+TGG 0.522889 1.2:+65085785 MS.gene07346:CDS
TGGCGAACTATTGCTTGGCC+AGG 0.524226 1.2:+65086278 MS.gene07346:CDS
ATGTCGCCCATTTGGTAAGC+GGG 0.525467 1.2:-65087350 None:intergenic
ACATATCTTACATCTGTTCG+AGG 0.526199 1.2:+65086175 MS.gene07346:CDS
CTGGTCTACTCCACTCGCAC+CGG 0.530180 1.2:-65086401 None:intergenic
AACTTCACCAGCATTTCAGC+AGG 0.533683 1.2:-65087506 None:intergenic
ATGCTTCAAAGTTACAACAT+TGG 0.534196 1.2:-65085476 None:intergenic
AGACGAGCTCTATCTTAACT+TGG 0.538554 1.2:+65085522 MS.gene07346:CDS
GATGGAAATAGTACTGAAGC+AGG 0.538738 1.2:+65085036 MS.gene07346:CDS
CATGTAATTGTCACTACCAT+TGG 0.539404 1.2:+65085060 MS.gene07346:CDS
GCCAGCTGACCAAATGTCAA+TGG 0.545960 1.2:-65086247 None:intergenic
TACATGGCTGAGCGTGCTGT+TGG 0.550149 1.2:+65085226 MS.gene07346:CDS
CTGTGTTGGAGTGTCTCATA+GGG 0.553373 1.2:+65085799 MS.gene07346:CDS
GTTGCACCAAATATAAGCTC+AGG 0.555012 1.2:-65086210 None:intergenic
CCAGCTCGTTGAAATTATCA+AGG 0.556293 1.2:+65086420 MS.gene07346:CDS
GTCACACAGCTTCAGCTGAT+GGG 0.557507 1.2:-65086024 None:intergenic
TTATTTAACTTCAAAGCCAA+CGG 0.559474 1.2:+65087382 MS.gene07346:CDS
CAGGCTAAGTGCTTGGAGAC+AGG 0.559654 1.2:+65085370 MS.gene07346:intron
CAACATTGGGGTGGTCCAGA+AGG 0.562382 1.2:-65085462 None:intergenic
CTTTCGCAAGCGTATGCCAC+CGG 0.564275 1.2:+65086844 MS.gene07346:CDS
GCGTATGCCACCGGAAGCTG+TGG 0.569334 1.2:+65086853 MS.gene07346:CDS
GTGCTTGGCGAACTATTGCT+TGG 0.571429 1.2:+65086273 MS.gene07346:CDS
TGGTCTACTCCACTCGCACC+GGG 0.577538 1.2:-65086400 None:intergenic
GTTTGTATTTGACAGGTCAA+GGG 0.579136 1.2:+65086144 MS.gene07346:intron
AGCTTCAGCTGATGGGTGTG+AGG 0.590416 1.2:-65086017 None:intergenic
GCTTTGAAGTTAAATAAAGG+AGG 0.593196 1.2:-65087376 None:intergenic
CACAAATCAAAGCTCATCCA+TGG 0.593923 1.2:+65086727 MS.gene07346:CDS
AAAAGGTTCTTCAAGACAAG+AGG 0.595284 1.2:+65085410 MS.gene07346:CDS
AGTTACAATACCTTGTGCCA+TGG 0.599279 1.2:-65086744 None:intergenic
GTAATTGTCACTACCATTGG+TGG 0.599626 1.2:+65085063 MS.gene07346:CDS
CCACTCGCACCGGGAAAGAG+AGG 0.604465 1.2:-65086391 None:intergenic
AGACAAGAGGTATAAGAACC+GGG 0.609068 1.2:+65085423 MS.gene07346:CDS
CAAAGCTCATCCATGGCACA+AGG 0.619767 1.2:+65086734 MS.gene07346:CDS
GCTGAGCGTGCTGTTGGACA+GGG 0.620273 1.2:+65085232 MS.gene07346:CDS
GCAGGAAATGGAAGCACATG+TGG 0.620825 1.2:+65085011 MS.gene07346:intron
TCACGCAATTCATCAAAGAA+GGG 0.626205 1.2:-65087319 None:intergenic
TGACCAAATGTCAATGGCTG+AGG 0.627785 1.2:-65086241 None:intergenic
ATTGTAGACAATAAGCTACA+TGG 0.637210 1.2:+65085210 MS.gene07346:intron
ACTACAGCAAAATGAATCAG+AGG 0.639822 1.2:+65085587 MS.gene07346:CDS
GATGTCGCCCATTTGGTAAG+CGG 0.653182 1.2:-65087351 None:intergenic
GCTTCAAAGTTACAACATTG+GGG 0.666920 1.2:-65085474 None:intergenic
ACGAGATCCACAGCTTCCGG+TGG 0.669001 1.2:-65086860 None:intergenic
TCAAAGTTACAACATTGGGG+TGG 0.682558 1.2:-65085471 None:intergenic
CTTGGAGACAGGTGAAACTG+TGG 0.690724 1.2:+65085381 MS.gene07346:CDS
TGTAGTGTCTGATCACACGA+TGG 0.833526 1.2:-65085570 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTCATTGTAAATATTTA+GGG + chr1.2:65084587-65084606 MS.gene07346:intron 10.0%
!! ATATAACTATAATGCTATAT+TGG - chr1.2:65087257-65087276 None:intergenic 15.0%
!! ATTTATTCACGATAATATAT+CGG - chr1.2:65086121-65086140 None:intergenic 15.0%
!! CAATTTCATTGTAAATATTT+AGG + chr1.2:65084586-65084605 MS.gene07346:intron 15.0%
!!! TATAATTTTATCAAGATATG+TGG + chr1.2:65086933-65086952 MS.gene07346:intron 15.0%
!! AAATAGCTTATACATAATCA+GGG + chr1.2:65084759-65084778 MS.gene07346:intron 20.0%
!! ATGTTAATTATGTCTGATTA+TGG + chr1.2:65086312-65086331 MS.gene07346:intron 20.0%
!! CTTTAATAATGTAAAAGAAG+AGG - chr1.2:65086596-65086615 None:intergenic 20.0%
!! TAAATTTGTCTTACAAAAGA+AGG - chr1.2:65085953-65085972 None:intergenic 20.0%
!! TACGAAATAATATGCATAAA+TGG - chr1.2:65086785-65086804 None:intergenic 20.0%
!! TCTACAAAATAAGAAATAGA+AGG - chr1.2:65085751-65085770 None:intergenic 20.0%
!!! AAATTTTGTTTGTATTTGAC+AGG + chr1.2:65086137-65086156 MS.gene07346:intron 20.0%
!!! TAAAGTTTTACGTATATCAA+TGG - chr1.2:65085616-65085635 None:intergenic 20.0%
!!! TATTTTTGTTTTGATTTGCA+TGG + chr1.2:65085879-65085898 MS.gene07346:intron 20.0%
! AAATTACATAGAAACATACC+TGG - chr1.2:65085645-65085664 None:intergenic 25.0%
! AACAACTTATGAAAACAACT+TGG + chr1.2:65084686-65084705 MS.gene07346:intron 25.0%
! AATAATATGCATAAATGGAC+AGG - chr1.2:65086780-65086799 None:intergenic 25.0%
! AATAGCTTATACATAATCAG+GGG + chr1.2:65084760-65084779 MS.gene07346:intron 25.0%
! AATTTGAACTCAGTGTAATT+AGG - chr1.2:65086705-65086724 None:intergenic 25.0%
! AGAGAAAACTAAGAGATTTA+TGG - chr1.2:65087129-65087148 None:intergenic 25.0%
! AGAGATTTATGGGAAAAAAA+TGG - chr1.2:65087118-65087137 None:intergenic 25.0%
! AGCTATTACATACATTCAAA+TGG - chr1.2:65086544-65086563 None:intergenic 25.0%
! CATAAAACCTCAAAATTTAC+TGG + chr1.2:65085823-65085842 MS.gene07346:CDS 25.0%
! CATAAATGACTTTACGAATA+TGG - chr1.2:65085161-65085180 None:intergenic 25.0%
! CGTAAATTGTAGAGATATTA+TGG + chr1.2:65085683-65085702 MS.gene07346:intron 25.0%
! GAAATAGCTTATACATAATC+AGG + chr1.2:65084758-65084777 MS.gene07346:intron 25.0%
! GAGAAAACTAAGAGATTTAT+GGG - chr1.2:65087128-65087147 None:intergenic 25.0%
! GAGATTTATGGGAAAAAAAT+GGG - chr1.2:65087117-65087136 None:intergenic 25.0%
! GATATAATAACATGATACTC+GGG - chr1.2:65087422-65087441 None:intergenic 25.0%
! GCAAATTGAAGAACATAAAA+GGG - chr1.2:65085286-65085305 None:intergenic 25.0%
! GCTATATTGGAAATGATTAT+AGG - chr1.2:65087244-65087263 None:intergenic 25.0%
! GGATATAATAACATGATACT+CGG - chr1.2:65087423-65087442 None:intergenic 25.0%
! TAATTTCCATTGATATGTGA+TGG + chr1.2:65087043-65087062 MS.gene07346:intron 25.0%
! TGCAAATTGAAGAACATAAA+AGG - chr1.2:65085287-65085306 None:intergenic 25.0%
! TTAGAGAATAATTCAGTAGA+AGG - chr1.2:65087444-65087463 None:intergenic 25.0%
! TTTGAATGTTATCTGATAAC+AGG + chr1.2:65085989-65086008 MS.gene07346:intron 25.0%
!! AAACATACCAGTAAATTTTG+AGG - chr1.2:65085833-65085852 None:intergenic 25.0%
!! ACTTATTTCAGCTAATCTTT+TGG + chr1.2:65084624-65084643 MS.gene07346:intron 25.0%
!! CTTTCATCACTTAAGATTTT+TGG + chr1.2:65086625-65086644 MS.gene07346:intron 25.0%
!! TAATAATTTGTGAGACTGTT+TGG + chr1.2:65084650-65084669 MS.gene07346:intron 25.0%
!! TTATTTAACTTCAAAGCCAA+CGG + chr1.2:65087382-65087401 MS.gene07346:CDS 25.0%
!! TTCAATTTGCAGCTTTTAAT+TGG + chr1.2:65085296-65085315 MS.gene07346:intron 25.0%
!! TTTTGACATAAGCAAACTAA+GGG - chr1.2:65084976-65084995 None:intergenic 25.0%
!!! TGTATAAGCTCTTTTTTGAA+TGG - chr1.2:65084895-65084914 None:intergenic 25.0%
!!! TTGGCTTTGAAGTTAAATAA+AGG - chr1.2:65087382-65087401 None:intergenic 25.0%
AACAAGCAAAACAACAGAAA+CGG - chr1.2:65085113-65085132 None:intergenic 30.0%
ACATCTTAATTGAGTGCTTA+TGG - chr1.2:65084940-65084959 None:intergenic 30.0%
AGAAATCGCTTGAATTTGAA+AGG - chr1.2:65087081-65087100 None:intergenic 30.0%
AGAATCTTCAGTTAATGAAG+AGG - chr1.2:65087210-65087229 None:intergenic 30.0%
ATGCTTCAAAGTTACAACAT+TGG - chr1.2:65085479-65085498 None:intergenic 30.0%
ATTCACGATAATATATCGGA+TGG - chr1.2:65086117-65086136 None:intergenic 30.0%
ATTGTAGACAATAAGCTACA+TGG + chr1.2:65085210-65085229 MS.gene07346:intron 30.0%
CATGAGAATTAAGGATGATA+AGG + chr1.2:65084504-65084523 MS.gene07346:CDS 30.0%
CGTAAAACTTTATTCTTACC+AGG + chr1.2:65085624-65085643 MS.gene07346:CDS 30.0%
GAAATAAGTCAAATCCAAAC+AGG - chr1.2:65084613-65084632 None:intergenic 30.0%
GAACAGATGTAAGATATGTT+TGG - chr1.2:65086174-65086193 None:intergenic 30.0%
GAATGAGAAACAACAAAAAG+TGG - chr1.2:65085729-65085748 None:intergenic 30.0%
GCTTATATTCATAACTGTGT+TGG + chr1.2:65085785-65085804 MS.gene07346:CDS 30.0%
GTGCAACTTAAATCATTGTA+TGG + chr1.2:65085901-65085920 MS.gene07346:intron 30.0%
TGAAACTGTGGCTATAAAAA+AGG + chr1.2:65085393-65085412 MS.gene07346:CDS 30.0%
TGCTTCAAAGTTACAACATT+GGG - chr1.2:65085478-65085497 None:intergenic 30.0%
TTAACATGTAGATAGATACC+TGG - chr1.2:65086299-65086318 None:intergenic 30.0%
TTAAGTGATGAAAGATAGCA+TGG - chr1.2:65086619-65086638 None:intergenic 30.0%
! AAACAGACAATAGGTTTTCT+AGG - chr1.2:65086087-65086106 None:intergenic 30.0%
! AAGATATGTGGAAGCTTTAT+AGG + chr1.2:65086945-65086964 MS.gene07346:intron 30.0%
! ACTTTATTTCTTCCCTTGTT+GGG - chr1.2:65086674-65086693 None:intergenic 30.0%
! ATTTAGAATCCATATCTCTG+TGG + chr1.2:65086338-65086357 MS.gene07346:intron 30.0%
! CATTTTATAGCTTCTGTTCA+TGG + chr1.2:65087017-65087036 MS.gene07346:intron 30.0%
! TTTCACGGAGTACAAAATTT+TGG - chr1.2:65086457-65086476 None:intergenic 30.0%
!! AAACTTGTTAAACACAATGC+AGG + chr1.2:65084993-65085012 MS.gene07346:intron 30.0%
!! GCTTTGAAGTTAAATAAAGG+AGG - chr1.2:65087379-65087398 None:intergenic 30.0%
!! GTTTTGACATAAGCAAACTA+AGG - chr1.2:65084977-65084996 None:intergenic 30.0%
!!! TTTTTTTTCGGTTATTGTGC+AGG + chr1.2:65085351-65085370 MS.gene07346:intron 30.0%
AAAAGGCCATCACATATCAA+TGG - chr1.2:65087052-65087071 None:intergenic 35.0%
AAAAGGTTCTTCAAGACAAG+AGG + chr1.2:65085410-65085429 MS.gene07346:CDS 35.0%
AACAGAAATCCTGGATTTCA+CGG - chr1.2:65086472-65086491 None:intergenic 35.0%
AAGAAGAGGACTATCTGTTA+AGG - chr1.2:65086582-65086601 None:intergenic 35.0%
AAGTTACCTGATGAGATTCT+TGG + chr1.2:65084481-65084500 MS.gene07346:CDS 35.0%
ACATATCTTACATCTGTTCG+AGG + chr1.2:65086175-65086194 MS.gene07346:CDS 35.0%
ACTACAGCAAAATGAATCAG+AGG + chr1.2:65085587-65085606 MS.gene07346:CDS 35.0%
ATCACGCAATTCATCAAAGA+AGG - chr1.2:65087323-65087342 None:intergenic 35.0%
CATGTAATTGTCACTACCAT+TGG + chr1.2:65085060-65085079 MS.gene07346:CDS 35.0%
GATTCTTGGCATGAGAATTA+AGG + chr1.2:65084495-65084514 MS.gene07346:CDS 35.0%
GCTTCAAAGTTACAACATTG+GGG - chr1.2:65085477-65085496 None:intergenic 35.0%
GTTAAACACAATGCAGGAAA+TGG + chr1.2:65084999-65085018 MS.gene07346:intron 35.0%
GTTTGTATTTGACAGGTCAA+GGG + chr1.2:65086144-65086163 MS.gene07346:intron 35.0%
TAATATTTACTCCTTCGTCC+CGG - chr1.2:65084846-65084865 None:intergenic 35.0%
TATACATAATCAGGGGACTT+GGG + chr1.2:65084767-65084786 MS.gene07346:intron 35.0%
TCACGCAATTCATCAAAGAA+GGG - chr1.2:65087322-65087341 None:intergenic 35.0%
TCATTTGATGCACATGTAGT+AGG - chr1.2:65087159-65087178 None:intergenic 35.0%
TCTTAGTTTCCACAGAGATA+TGG - chr1.2:65086350-65086369 None:intergenic 35.0%
TGATTTGACACAGAGCTTAA+GGG + chr1.2:65087479-65087498 MS.gene07346:intron 35.0%
TGTTTGTATTTGACAGGTCA+AGG + chr1.2:65086143-65086162 MS.gene07346:intron 35.0%
TTATACATAATCAGGGGACT+TGG + chr1.2:65084766-65084785 MS.gene07346:intron 35.0%
TTGATCGTAAACAGAAATCC+TGG - chr1.2:65086481-65086500 None:intergenic 35.0%
! AAGACAAGAGGTATAAGAAC+CGG + chr1.2:65085422-65085441 MS.gene07346:CDS 35.0%
! AATTTGAAAGGCACAGGAAA+AGG - chr1.2:65087069-65087088 None:intergenic 35.0%
! ACTACCATTGGTGGTAAAAA+TGG + chr1.2:65085072-65085091 MS.gene07346:CDS 35.0%
! CACTTTATTTCTTCCCTTGT+TGG - chr1.2:65086675-65086694 None:intergenic 35.0%
! CTTTATTTCTTCCCTTGTTG+GGG - chr1.2:65086673-65086692 None:intergenic 35.0%
! GTAAATATTTAGGGCCTGTT+TGG + chr1.2:65084596-65084615 MS.gene07346:intron 35.0%
!! ATGGATGAGCTTTGATTTGT+GGG - chr1.2:65086728-65086747 None:intergenic 35.0%
!! CTTAAGATTTTTGGATCGAC+TGG + chr1.2:65086634-65086653 MS.gene07346:intron 35.0%
!! TTGCTTGTTGTGTGGATTAT+TGG + chr1.2:65085124-65085143 MS.gene07346:intron 35.0%
!!! ATCATTTGGTGTAGTTTTCC+AGG + chr1.2:65085255-65085274 MS.gene07346:CDS 35.0%
ACATCTACTATTCCAGAAGC+AGG - chr1.2:65084433-65084452 None:intergenic 40.0%
AGACGAGCTCTATCTTAACT+TGG + chr1.2:65085522-65085541 MS.gene07346:CDS 40.0%
AGACTGTTTGGAAGAGGTTA+CGG + chr1.2:65084662-65084681 MS.gene07346:intron 40.0%
AGAGCTCCTGAGCTTATATT+TGG + chr1.2:65086204-65086223 MS.gene07346:CDS 40.0%
AGTTACAATACCTTGTGCCA+TGG - chr1.2:65086747-65086766 None:intergenic 40.0%
CAAATACCCGCTTACCAAAT+GGG + chr1.2:65087344-65087363 MS.gene07346:CDS 40.0%
CACAAATCAAAGCTCATCCA+TGG + chr1.2:65086727-65086746 MS.gene07346:CDS 40.0%
CCAGCTCGTTGAAATTATCA+AGG + chr1.2:65086420-65086439 MS.gene07346:CDS 40.0%
GAACATAAAAGGGACTAACC+TGG - chr1.2:65085276-65085295 None:intergenic 40.0%
GGACAGTGAAAACAGACAAT+AGG - chr1.2:65086096-65086115 None:intergenic 40.0%
GTAATTGTCACTACCATTGG+TGG + chr1.2:65085063-65085082 MS.gene07346:CDS 40.0%
GTGATTTGACACAGAGCTTA+AGG + chr1.2:65087478-65087497 MS.gene07346:intron 40.0%
GTTGCACCAAATATAAGCTC+AGG - chr1.2:65086213-65086232 None:intergenic 40.0%
TCAAAGTTACAACATTGGGG+TGG - chr1.2:65085474-65085493 None:intergenic 40.0%
TGAACTAAGGGATAAGGAGT+TGG + chr1.2:65084804-65084823 MS.gene07346:intron 40.0%
TGTGCCTTGTGAAATGTAGT+TGG + chr1.2:65087282-65087301 MS.gene07346:intron 40.0%
TTCTCTAATGCTGTTGTTGC+TGG + chr1.2:65087456-65087475 MS.gene07346:intron 40.0%
TTTGTGAGACTGTTTGGAAG+AGG + chr1.2:65084656-65084675 MS.gene07346:intron 40.0%
! AGACAAGAGGTATAAGAACC+GGG + chr1.2:65085423-65085442 MS.gene07346:CDS 40.0%
! CCTTGATAATTTCAACGAGC+TGG - chr1.2:65086423-65086442 None:intergenic 40.0%
! CTGGTTTGAACTAAGGGATA+AGG + chr1.2:65084798-65084817 MS.gene07346:intron 40.0%
! GATGGAAATAGTACTGAAGC+AGG + chr1.2:65085036-65085055 MS.gene07346:CDS 40.0%
! TTTTGTACTCCGTGAAATCC+AGG + chr1.2:65086460-65086479 MS.gene07346:intron 40.0%
!! CATGGATGAGCTTTGATTTG+TGG - chr1.2:65086729-65086748 None:intergenic 40.0%
!! GCTCAACTGGTTTGAACTAA+GGG + chr1.2:65084792-65084811 MS.gene07346:intron 40.0%
!!! CTGTTGTTTTGCTTGTTGTG+TGG + chr1.2:65085116-65085135 MS.gene07346:intron 40.0%
AACTTCACCAGCATTTCAGC+AGG - chr1.2:65087509-65087528 None:intergenic 45.0%
ACACCTCAGCCATTGACATT+TGG + chr1.2:65086238-65086257 MS.gene07346:CDS 45.0%
ACAGCTGTGCTTCGAAGATT+TGG - chr1.2:65086908-65086927 None:intergenic 45.0%
ACTAAGGGATAAGGAGTTGG+AGG + chr1.2:65084807-65084826 MS.gene07346:intron 45.0%
AGCTGAAGCTGTGTGACTTT+GGG + chr1.2:65086030-65086049 MS.gene07346:CDS 45.0%
ATTGCAAACAATGCGCCTTC+TGG + chr1.2:65085447-65085466 MS.gene07346:CDS 45.0%
CCAAATACCCGCTTACCAAA+TGG + chr1.2:65087343-65087362 MS.gene07346:CDS 45.0%
CCATTTGGTAAGCGGGTATT+TGG - chr1.2:65087346-65087365 None:intergenic 45.0%
CTCATGCCAAGAATCTCATC+AGG - chr1.2:65084490-65084509 None:intergenic 45.0%
GCCTCCAACTACATTTCACA+AGG - chr1.2:65087289-65087308 None:intergenic 45.0%
GCCTTGTGAAATGTAGTTGG+AGG + chr1.2:65087285-65087304 MS.gene07346:intron 45.0%
TAAAAATGGCCAGCCAAAGC+AGG + chr1.2:65085086-65085105 MS.gene07346:CDS 45.0%
TATTGTGCAGGCTAAGTGCT+TGG + chr1.2:65085363-65085382 MS.gene07346:intron 45.0%
TGAAATGTAGTTGGAGGCTC+TGG + chr1.2:65087291-65087310 MS.gene07346:intron 45.0%
TGACCAAATGTCAATGGCTG+AGG - chr1.2:65086244-65086263 None:intergenic 45.0%
TGCTGAAATGCTGGTGAAGT+TGG + chr1.2:65087508-65087527 MS.gene07346:CDS 45.0%
TGTAGTGTCTGATCACACGA+TGG - chr1.2:65085573-65085592 None:intergenic 45.0%
! ACTGTGTTGGAGTGTCTCAT+AGG + chr1.2:65085798-65085817 MS.gene07346:CDS 45.0%
! ATGGAAGCACATGTGGTAGA+TGG + chr1.2:65085018-65085037 MS.gene07346:CDS 45.0%
! CGCTTGAATTTGAAAGGCAC+AGG - chr1.2:65087075-65087094 None:intergenic 45.0%
! CTGTGTTGGAGTGTCTCATA+GGG + chr1.2:65085799-65085818 MS.gene07346:CDS 45.0%
! CTTTGGGAGTGCAAAAGTCT+TGG + chr1.2:65086046-65086065 MS.gene07346:CDS 45.0%
! CTTTGTTTGCGTCGTCATAG+CGG + chr1.2:65087558-65087577 MS.gene07346:CDS 45.0%
! GGAAAACTAGTTCTCACCGT+TGG - chr1.2:65087401-65087420 None:intergenic 45.0%
! TCTTTTCAGCCTCTCTTTCC+CGG + chr1.2:65086382-65086401 MS.gene07346:intron 45.0%
!! AGATTTTTGGATCGACTGGC+AGG + chr1.2:65086638-65086657 MS.gene07346:intron 45.0%
!! GGCTCAACTGGTTTGAACTA+AGG + chr1.2:65084791-65084810 MS.gene07346:intron 45.0%
!!! AGGTTTTAGGTACCCCAACA+AGG + chr1.2:65086658-65086677 MS.gene07346:intron 45.0%
!!! CTGGCCATTTTTACCACCAA+TGG - chr1.2:65085079-65085098 None:intergenic 45.0%
!!! GGTTTTAGGTACCCCAACAA+GGG + chr1.2:65086659-65086678 MS.gene07346:intron 45.0%
!!! ATGTTTATTATATTTTTTTT+CGG + chr1.2:65085339-65085358 MS.gene07346:intron 5.0%
ACATAATCAGGGGACTTGGG+TGG + chr1.2:65084770-65084789 MS.gene07346:intron 50.0%
AGTCACACAGCTTCAGCTGA+TGG - chr1.2:65086028-65086047 None:intergenic 50.0%
ATCACACGATGGACAGTCTC+AGG - chr1.2:65085562-65085581 None:intergenic 50.0%
ATGTCGCCCATTTGGTAAGC+GGG - chr1.2:65087353-65087372 None:intergenic 50.0%
ATTTACTCCTTCGTCCCGGT+TGG - chr1.2:65084842-65084861 None:intergenic 50.0%
CAAAGCTCATCCATGGCACA+AGG + chr1.2:65086734-65086753 MS.gene07346:CDS 50.0%
CAACAGAAACGGACCTGCTT+TGG - chr1.2:65085102-65085121 None:intergenic 50.0%
CACTGCTTTCTTGCGTGAGA+CGG - chr1.2:65087536-65087555 None:intergenic 50.0%
CAGCTGAAGCTGTGTGACTT+TGG + chr1.2:65086029-65086048 MS.gene07346:CDS 50.0%
CTTGGAGACAGGTGAAACTG+TGG + chr1.2:65085381-65085400 MS.gene07346:CDS 50.0%
GATAAGGAGTTGGAGGTCCT+GGG + chr1.2:65084814-65084833 MS.gene07346:intron 50.0%
GATGTCGCCCATTTGGTAAG+CGG - chr1.2:65087354-65087373 None:intergenic 50.0%
GCCAGCTGACCAAATGTCAA+TGG - chr1.2:65086250-65086269 None:intergenic 50.0%
GCCATTGACATTTGGTCAGC+TGG + chr1.2:65086246-65086265 MS.gene07346:CDS 50.0%
GCTGTTGGACAGGGATCATT+TGG + chr1.2:65085241-65085260 MS.gene07346:CDS 50.0%
GGCGCATTGTTTGCAATTCC+CGG - chr1.2:65085444-65085463 None:intergenic 50.0%
GTCACACAGCTTCAGCTGAT+GGG - chr1.2:65086027-65086046 None:intergenic 50.0%
GTGCTTGGCGAACTATTGCT+TGG + chr1.2:65086273-65086292 MS.gene07346:CDS 50.0%
! GCAGGAAATGGAAGCACATG+TGG + chr1.2:65085011-65085030 MS.gene07346:intron 50.0%
! TGGATCGACTGGCAGGTTTT+AGG + chr1.2:65086645-65086664 MS.gene07346:intron 50.0%
AGAAACGGACCTGCTTTGGC+TGG - chr1.2:65085098-65085117 None:intergenic 55.0%
CAACATTGGGGTGGTCCAGA+AGG - chr1.2:65085465-65085484 None:intergenic 55.0%
CAGGCTAAGTGCTTGGAGAC+AGG + chr1.2:65085370-65085389 MS.gene07346:intron 55.0%
CTTTCGCAAGCGTATGCCAC+CGG + chr1.2:65086844-65086863 MS.gene07346:CDS 55.0%
GAGACGAGATCCACAGCTTC+CGG - chr1.2:65086866-65086885 None:intergenic 55.0%
GGAGGAAGATGTCGCCCATT+TGG - chr1.2:65087361-65087380 None:intergenic 55.0%
GGATAAGGAGTTGGAGGTCC+TGG + chr1.2:65084813-65084832 MS.gene07346:intron 55.0%
TACATGGCTGAGCGTGCTGT+TGG + chr1.2:65085226-65085245 MS.gene07346:CDS 55.0%
TGGCGAACTATTGCTTGGCC+AGG + chr1.2:65086278-65086297 MS.gene07346:CDS 55.0%
! AGCTTCAGCTGATGGGTGTG+AGG - chr1.2:65086020-65086039 None:intergenic 55.0%
ACGAGATCCACAGCTTCCGG+TGG - chr1.2:65086863-65086882 None:intergenic 60.0%
CTGGTCTACTCCACTCGCAC+CGG - chr1.2:65086404-65086423 None:intergenic 60.0%
TGGAGGTCCTGGGTTCCAAC+CGG + chr1.2:65084824-65084843 MS.gene07346:intron 60.0%
TGGTCAGCTGGCTGTGTGCT+TGG + chr1.2:65086258-65086277 MS.gene07346:CDS 60.0%
TGGTCTACTCCACTCGCACC+GGG - chr1.2:65086403-65086422 None:intergenic 60.0%
! GCTGAGCGTGCTGTTGGACA+GGG + chr1.2:65085232-65085251 MS.gene07346:CDS 60.0%
!! GGGAGTGCCTGCTGAAATGC+TGG + chr1.2:65087499-65087518 MS.gene07346:CDS 60.0%
CCACTCGCACCGGGAAAGAG+AGG - chr1.2:65086394-65086413 None:intergenic 65.0%
CCTCTCTTTCCCGGTGCGAG+TGG + chr1.2:65086391-65086410 MS.gene07346:CDS 65.0%
CTGGGTTCCAACCGGGACGA+AGG + chr1.2:65084832-65084851 MS.gene07346:intron 65.0%
CTTCGTCCCGGTTGGAACCC+AGG - chr1.2:65084834-65084853 None:intergenic 65.0%
GCGTATGCCACCGGAAGCTG+TGG + chr1.2:65086853-65086872 MS.gene07346:CDS 65.0%
GGAGGTCCTGGGTTCCAACC+GGG + chr1.2:65084825-65084844 MS.gene07346:intron 65.0%
GGGGACTTGGGTGGCTCAAC+TGG + chr1.2:65084779-65084798 MS.gene07346:intron 65.0%
! GGCTGAGCGTGCTGTTGGAC+AGG + chr1.2:65085231-65085250 MS.gene07346:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 65084419 65087577 65084419 ID=MS.gene07346
chr1.2 mRNA 65084419 65087577 65084419 ID=MS.gene07346.t1;Parent=MS.gene07346
chr1.2 exon 65084419 65084525 65084419 ID=MS.gene07346.t1.exon1;Parent=MS.gene07346.t1
chr1.2 CDS 65084419 65084525 65084419 ID=cds.MS.gene07346.t1;Parent=MS.gene07346.t1
chr1.2 exon 65085015 65085107 65085015 ID=MS.gene07346.t1.exon2;Parent=MS.gene07346.t1
chr1.2 CDS 65085015 65085107 65085015 ID=cds.MS.gene07346.t1;Parent=MS.gene07346.t1
chr1.2 exon 65085217 65085276 65085217 ID=MS.gene07346.t1.exon3;Parent=MS.gene07346.t1
chr1.2 CDS 65085217 65085276 65085217 ID=cds.MS.gene07346.t1;Parent=MS.gene07346.t1
chr1.2 exon 65085373 65085645 65085373 ID=MS.gene07346.t1.exon4;Parent=MS.gene07346.t1
chr1.2 CDS 65085373 65085645 65085373 ID=cds.MS.gene07346.t1;Parent=MS.gene07346.t1
chr1.2 exon 65085770 65085844 65085770 ID=MS.gene07346.t1.exon5;Parent=MS.gene07346.t1
chr1.2 CDS 65085770 65085844 65085770 ID=cds.MS.gene07346.t1;Parent=MS.gene07346.t1
chr1.2 exon 65086011 65086067 65086011 ID=MS.gene07346.t1.exon6;Parent=MS.gene07346.t1
chr1.2 CDS 65086011 65086067 65086011 ID=cds.MS.gene07346.t1;Parent=MS.gene07346.t1
chr1.2 exon 65086159 65086299 65086159 ID=MS.gene07346.t1.exon7;Parent=MS.gene07346.t1
chr1.2 CDS 65086159 65086299 65086159 ID=cds.MS.gene07346.t1;Parent=MS.gene07346.t1
chr1.2 exon 65086391 65086441 65086391 ID=MS.gene07346.t1.exon8;Parent=MS.gene07346.t1
chr1.2 CDS 65086391 65086441 65086391 ID=cds.MS.gene07346.t1;Parent=MS.gene07346.t1
chr1.2 exon 65086660 65086755 65086660 ID=MS.gene07346.t1.exon9;Parent=MS.gene07346.t1
chr1.2 CDS 65086660 65086755 65086660 ID=cds.MS.gene07346.t1;Parent=MS.gene07346.t1
chr1.2 exon 65086842 65086925 65086842 ID=MS.gene07346.t1.exon10;Parent=MS.gene07346.t1
chr1.2 CDS 65086842 65086925 65086842 ID=cds.MS.gene07346.t1;Parent=MS.gene07346.t1
chr1.2 exon 65087301 65087403 65087301 ID=MS.gene07346.t1.exon11;Parent=MS.gene07346.t1
chr1.2 CDS 65087301 65087403 65087301 ID=cds.MS.gene07346.t1;Parent=MS.gene07346.t1
chr1.2 exon 65087492 65087577 65087492 ID=MS.gene07346.t1.exon12;Parent=MS.gene07346.t1
chr1.2 CDS 65087492 65087577 65087492 ID=cds.MS.gene07346.t1;Parent=MS.gene07346.t1
Gene Sequence

>MS.gene07346

CGGGTGTAGCACCTGCTTCTGGAATAGTAGATGTAAATGCAAGTTCAGCTATTGCTGTTGATAAGTTACCTGATGAGATTCTTGGCATGAGAATTAAGGATGATAAGGTAAATTAATATAAATCATAAAAAAAATGTCTTTTTTATTTTCTTTTACATTCTATTCAACAATTTCATTGTAAATATTTAGGGCCTGTTTGGATTTGACTTATTTCAGCTAATCTTTTGGCATTAATAATTTGTGAGACTGTTTGGAAGAGGTTACGGAAACAACTTATGAAAACAACTTGGCTTATTTGAAATTTGAATACAACTCGACTTTATTTTATCTTTTGTTATAGAAATAGCTTATACATAATCAGGGGACTTGGGTGGCTCAACTGGTTTGAACTAAGGGATAAGGAGTTGGAGGTCCTGGGTTCCAACCGGGACGAAGGAGTAAATATTAATCTAGAAGCTAATTACTAACATCTACCATTCAAAAAAGAGCTTATACATATGCACTATGATAAACGCATTCCATAAGCACTCAATTAAGATGTTTATCTAAACAGACCCTTAGTTTGCTTATGTCAAAACTTGTTAAACACAATGCAGGAAATGGAAGCACATGTGGTAGATGGAAATAGTACTGAAGCAGGACATGTAATTGTCACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGGTCCGTTTCTGTTGTTTTGCTTGTTGTGTGGATTATTGGATCGTTTTTGTCCATATTCGTAAAGTCATTTATGTGTTGTTTGATGTTTGCGATGATTTTATGATTGTAGACAATAAGCTACATGGCTGAGCGTGCTGTTGGACAGGGATCATTTGGTGTAGTTTTCCAGGTTAGTCCCTTTTATGTTCTTCAATTTGCAGCTTTTAATTGGATACAGTTTGAAGTAAACAGATGTTTATTATATTTTTTTTCGGTTATTGTGCAGGCTAAGTGCTTGGAGACAGGTGAAACTGTGGCTATAAAAAAGGTTCTTCAAGACAAGAGGTATAAGAACCGGGAATTGCAAACAATGCGCCTTCTGGACCACCCCAATGTTGTAACTTTGAAGCATTGTTTCTTTTCAACAACTGAAAAAGACGAGCTCTATCTTAACTTGGTACTTGAGTTTGTTCCTGAGACTGTCCATCGTGTGATCAGACACTACAGCAAAATGAATCAGAGGATGCCATTGATATACGTAAAACTTTATTCTTACCAGGTATGTTTCTATGTAATTTATAAAATTTCATTTTTCTCGTAAATTGTAGAGATATTATGGTATCTACTGTGCTGTTTATGCCACTTTTTGTTGTTTCTCATTCCTTCTATTTCTTATTTTGTAGATATGTAGATCACTAGCTTATATTCATAACTGTGTTGGAGTGTCTCATAGGGACATAAAACCTCAAAATTTACTGGTATGTTTCGTAATTTGCTTCTTTAATGTCTTAGTATTTTTGTTTTGATTTGCATGGTGCAACTTAAATCATTGTATGGAGTAATTTGTTTCAAGATGTATTTTTCCTTCTTTTGTAAGACAAATTTAGTTTCATATTCAATCTTTTGAATGTTATCTGATAACAGGTCAATCCTCACACCCATCAGCTGAAGCTGTGTGACTTTGGGAGTGCAAAAGTCTTGGTATGTTTATCGTCAACCTAGAAAACCTATTGTCTGTTTTCACTGTCCATCCGATATATTATCGTGAATAAATTTTGTTTGTATTTGACAGGTCAAGGGTGAACCAAACATATCTTACATCTGTTCGAGGTATTATAGAGCTCCTGAGCTTATATTTGGTGCAACTGAATACACCTCAGCCATTGACATTTGGTCAGCTGGCTGTGTGCTTGGCGAACTATTGCTTGGCCAGGTATCTATCTACATGTTAATTATGTCTGATTATGGTTTATTTAGAATCCATATCTCTGTGGAAACTAAGAATGAATTCACATTCTTTTCAGCCTCTCTTTCCCGGTGCGAGTGGAGTAGACCAGCTCGTTGAAATTATCAAGGTGAGATGAAATCCAAAATTTTGTACTCCGTGAAATCCAGGATTTCTGTTTACGATCAATTGTTTCTCTTTGCTTGATGATACTTGCTTTGTACAATTTCCATTTGAATGTATGTAATAGCTTGTAGATATAGATATCCTTAACAGATAGTCCTCTTCTTTTACATTATTAAAGCCATGCTATCTTTCATCACTTAAGATTTTTGGATCGACTGGCAGGTTTTAGGTACCCCAACAAGGGAAGAAATAAAGTGTATGAATCCTAATTACACTGAGTTCAAATTCCCACAAATCAAAGCTCATCCATGGCACAAGGTATTGTAACTTTCGCTTTTTCCTGTCCATTTATGCATATTATTTCGTAGTGTTGTTAATATATATATATGAATATTCATCATCAGATCTTTCGCAAGCGTATGCCACCGGAAGCTGTGGATCTCGTCTCAAGACTACTTCAATACTCTCCAAATCTTCGAAGCACAGCTGTGAGTATATAATTTTATCAAGATATGTGGAAGCTTTATAGGCAGTTTTAATCTTGTTGAATAACATAGACTGTCAAGTTATGTTCGCAATCATTTTATAGCTTCTGTTCATGGTATTAATTTCCATTGATATGTGATGGCCTTTTCCTGTGCCTTTCAAATTCAAGCGATTTCTATCAATATTTTTTCCCATTTTTTTCCCATAAATCTCTTAGTTTTCTCTTTATATACCTACTACATGTGCATCAAATGAAAATATATTAATATTCGCATCGATAATTCCTCTTCATTAACTGAAGATTCTTCAGTATTATTCCTATAATCATTTCCAATATAGCATTATAGTTATATTGTTTTGTGCCTTGTGAAATGTAGTTGGAGGCTCTGGTTCATCCCTTCTTTGATGAATTGCGTGATCCAAATACCCGCTTACCAAATGGGCGACATCTTCCTCCTTTATTTAACTTCAAAGCCAACGGTGAGAACTAGTTTTCCCGAGTATCATGTTATTATATCCTTCTACTGAATTATTCTCTAATGCTGTTGTTGCTGGTGATTTGACACAGAGCTTAAGGGAGTGCCTGCTGAAATGCTGGTGAAGTTGGTTCCGTCTCACGCAAGAAAGCAGTGTTCTTTGTTTGCGTCGTCATAG

Protein sequence

>MS.gene07346.t1

RVUHLLLEUUMUMQVQLLLLISYLMRFLAUELRMIRKWKHMWUMEIVLKQDMULSLPLVVKMASQSRQUATWLSVLLDRDHLVUFSRLSAWRQVKLWLUKRFFKTRGIRTGNCKQCAFWTTPMLULUSIVSFQQLKKTSSILTWYLSLFLRLSIVUSDTTAKUIRGCHUYTUNFILTRYVDHULIFITVLECLIGTUNLKIYWSILTPISUSCVTLGVQKSWSRVNQTYLTSVRGIIELLSLYLVQLNTPQPLTFGQLAVCLANYCLASLSFPVRVEUTSSLKLSRFUVPQQGKKUSVUILITLSSNSHKSKLIHGTRSFASVCHRKLWISSQDYFNTLQIFEAQLWRLWFIPSLMNCVIQIPAYQMGDIFLLYLTSKPTSLRECLLKCWUSWFRLTQESSVLCLRRH