Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053228.t1 | XP_024637108.1 | 90.5 | 210 | 19 | 1 | 1 | 210 | 1 | 209 | 5.20E-96 | 360.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053228.t1 | Q9LMP7 | 70.0 | 210 | 60 | 3 | 1 | 210 | 1 | 207 | 4.1e-73 | 275.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053228.t1 | G7JD87 | 90.5 | 210 | 19 | 1 | 1 | 210 | 1 | 209 | 3.8e-96 | 360.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene053228 | 0.817917 | 2.57E-52 | -1.69E-46 |
| MS.gene04920 | MS.gene053228 | 0.825837 | 3.77E-54 | -1.69E-46 |
| MS.gene051003 | MS.gene053228 | 0.80172 | 7.88E-49 | -1.69E-46 |
| MS.gene052793 | MS.gene053228 | 0.823187 | 1.59E-53 | -1.69E-46 |
| MS.gene053228 | MS.gene055150 | 0.814072 | 1.86E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene058592 | 0.811094 | 8.31E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene05952 | 0.817055 | 4.02E-52 | -1.69E-46 |
| MS.gene053228 | MS.gene060935 | 0.803751 | 3.00E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene060937 | 0.810719 | 1.00E-50 | -1.69E-46 |
| MS.gene053228 | MS.gene061100 | 0.821711 | 3.49E-53 | -1.69E-46 |
| MS.gene053228 | MS.gene061707 | 0.811238 | 7.74E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene061782 | 0.82727 | 1.72E-54 | -1.69E-46 |
| MS.gene053228 | MS.gene064319 | 0.80254 | 5.35E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene066012 | 0.832753 | 7.90E-56 | -1.69E-46 |
| MS.gene053228 | MS.gene069828 | 0.809988 | 1.44E-50 | -1.69E-46 |
| MS.gene053228 | MS.gene070671 | 0.819741 | 9.90E-53 | -1.69E-46 |
| MS.gene053228 | MS.gene073207 | 0.811385 | 7.19E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene07346 | 0.800972 | 1.12E-48 | -1.69E-46 |
| MS.gene053228 | MS.gene07450 | 0.823879 | 1.09E-53 | -1.69E-46 |
| MS.gene053228 | MS.gene07878 | 0.811969 | 5.36E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene08470 | 0.807763 | 4.31E-50 | -1.69E-46 |
| MS.gene053228 | MS.gene09061 | 0.801663 | 8.10E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene20997 | 0.810141 | 1.34E-50 | -1.69E-46 |
| MS.gene053228 | MS.gene21437 | 0.807614 | 4.64E-50 | -1.69E-46 |
| MS.gene053228 | MS.gene30352 | 0.843719 | 1.18E-58 | -1.69E-46 |
| MS.gene053228 | MS.gene32929 | 0.81731 | 3.52E-52 | -1.69E-46 |
| MS.gene053228 | MS.gene34508 | 0.830288 | 3.20E-55 | -1.69E-46 |
| MS.gene053228 | MS.gene35789 | 0.800591 | 1.34E-48 | -1.69E-46 |
| MS.gene053228 | MS.gene37090 | 0.804204 | 2.42E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene39037 | 0.820379 | 7.08E-53 | -1.69E-46 |
| MS.gene053228 | MS.gene40799 | 0.801682 | 8.02E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene42115 | -0.805794 | 1.12E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene44179 | 0.830758 | 2.45E-55 | -1.69E-46 |
| MS.gene053228 | MS.gene46408 | 0.812782 | 3.57E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene47276 | 0.812677 | 3.76E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene49818 | 0.803099 | 4.10E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene52120 | 0.815072 | 1.11E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene52122 | 0.818041 | 2.41E-52 | -1.69E-46 |
| MS.gene053228 | MS.gene52994 | 0.838475 | 2.81E-57 | -1.69E-46 |
| MS.gene053228 | MS.gene53391 | 0.803714 | 3.06E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene55094 | 0.805858 | 1.09E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene55699 | 0.803351 | 3.63E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene55707 | 0.802546 | 5.33E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene57028 | 0.804124 | 2.51E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene57343 | 0.808628 | 2.82E-50 | -1.69E-46 |
| MS.gene053228 | MS.gene57783 | 0.816718 | 4.79E-52 | -1.69E-46 |
| MS.gene053228 | MS.gene57980 | 0.810073 | 1.38E-50 | -1.69E-46 |
| MS.gene053228 | MS.gene58081 | 0.814436 | 1.54E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene59505 | 0.800036 | 1.74E-48 | -1.69E-46 |
| MS.gene053228 | MS.gene59616 | 0.807161 | 5.79E-50 | -1.69E-46 |
| MS.gene053228 | MS.gene59697 | 0.816367 | 5.73E-52 | -1.69E-46 |
| MS.gene053228 | MS.gene61153 | 0.814322 | 1.63E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene61282 | 0.820502 | 6.63E-53 | -1.69E-46 |
| MS.gene053228 | MS.gene61588 | 0.800344 | 1.51E-48 | -1.69E-46 |
| MS.gene053228 | MS.gene62676 | 0.828635 | 8.06E-55 | -1.69E-46 |
| MS.gene053228 | MS.gene62677 | 0.847776 | 9.34E-60 | -1.69E-46 |
| MS.gene053228 | MS.gene63430 | 0.827921 | 1.20E-54 | -1.69E-46 |
| MS.gene053228 | MS.gene64806 | 0.802091 | 6.61E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene69820 | 0.810977 | 8.81E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene70154 | 0.824869 | 6.39E-54 | -1.69E-46 |
| MS.gene053228 | MS.gene71867 | 0.812508 | 4.09E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene71945 | 0.812115 | 4.99E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene72353 | 0.813568 | 2.40E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene72950 | -0.82337 | 1.44E-53 | -1.69E-46 |
| MS.gene053228 | MS.gene74604 | 0.804308 | 2.30E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene75344 | 0.821311 | 4.32E-53 | -1.69E-46 |
| MS.gene053228 | MS.gene76244 | 0.800998 | 1.11E-48 | -1.69E-46 |
| MS.gene053228 | MS.gene77361 | 0.808132 | 3.60E-50 | -1.69E-46 |
| MS.gene053228 | MS.gene84179 | 0.813369 | 2.65E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene86038 | 0.829763 | 4.29E-55 | -1.69E-46 |
| MS.gene053228 | MS.gene87292 | 0.811666 | 6.25E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene89706 | 0.811075 | 8.39E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene91203 | 0.821895 | 3.17E-53 | -1.69E-46 |
| MS.gene053228 | MS.gene92076 | 0.807389 | 5.18E-50 | -1.69E-46 |
| MS.gene053228 | MS.gene93123 | 0.800933 | 1.14E-48 | -1.69E-46 |
| MS.gene053228 | MS.gene94674 | 0.82066 | 6.10E-53 | -1.69E-46 |
| MS.gene053228 | MS.gene95614 | 0.82734 | 1.65E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053228.t1 | MTR_4g006570 | 90.476 | 210 | 19 | 1 | 1 | 210 | 1 | 209 | 4.36e-137 | 383 |
| MS.gene053228.t1 | MTR_4g006570 | 97.778 | 180 | 4 | 0 | 14 | 193 | 30 | 209 | 2.92e-126 | 356 |
| MS.gene053228.t1 | MTR_4g006570 | 97.778 | 180 | 4 | 0 | 14 | 193 | 44 | 223 | 3.11e-126 | 357 |
| MS.gene053228.t1 | MTR_4g006570 | 97.778 | 180 | 4 | 0 | 14 | 193 | 39 | 218 | 3.54e-126 | 356 |
| MS.gene053228.t1 | MTR_4g006570 | 89.730 | 185 | 18 | 1 | 26 | 210 | 1 | 184 | 5.57e-118 | 333 |
| MS.gene053228.t1 | MTR_2g104910 | 79.602 | 201 | 40 | 1 | 7 | 207 | 5 | 204 | 7.05e-112 | 319 |
| MS.gene053228.t1 | MTR_2g104910 | 78.061 | 196 | 42 | 1 | 15 | 210 | 2 | 196 | 1.96e-106 | 305 |
| MS.gene053228.t1 | MTR_4g025850 | 33.333 | 210 | 118 | 6 | 6 | 200 | 12 | 214 | 1.32e-27 | 105 |
| MS.gene053228.t1 | MTR_4g025850 | 31.395 | 172 | 97 | 5 | 6 | 162 | 12 | 177 | 7.13e-18 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053228.t1 | AT1G15880 | 70.000 | 210 | 60 | 3 | 1 | 210 | 1 | 207 | 3.92e-101 | 292 |
| MS.gene053228.t1 | AT2G45200 | 33.333 | 210 | 118 | 6 | 6 | 200 | 11 | 213 | 1.59e-26 | 102 |
| MS.gene053228.t1 | AT2G45200 | 31.004 | 229 | 116 | 7 | 6 | 200 | 11 | 231 | 6.78e-24 | 95.9 |
Find 43 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAGATGCATTCTCTTTC+AGG | 0.138922 | 4.2:-92839032 | None:intergenic |
| GATCCTGATGTTTGGAATTC+AGG | 0.177627 | 4.2:+92839746 | MS.gene053228:CDS |
| CACTGACATGTCCGGTATTC+CGG | 0.282446 | 4.2:-92839056 | None:intergenic |
| GTCTTCCAGCGTTCAACATT+TGG | 0.323835 | 4.2:+92839429 | MS.gene053228:CDS |
| ATCATCTGGCGGCTCAGATA+TGG | 0.394492 | 4.2:+92838480 | MS.gene053228:CDS |
| TTTCCTGAATTCCAAACATC+AGG | 0.402423 | 4.2:-92839749 | None:intergenic |
| ATGGGATTCCCTTCGCAAAC+AGG | 0.405350 | 4.2:+92836825 | MS.gene053228:CDS |
| AAGAAAACTTGAAGCTCAAT+TGG | 0.407508 | 4.2:+92838315 | MS.gene053228:CDS |
| TCTACCAATCTTTCAACAAA+AGG | 0.422252 | 4.2:+92838370 | MS.gene053228:CDS |
| GCATCTGTGAGTTTACTTGT+TGG | 0.422941 | 4.2:-92838447 | None:intergenic |
| GGAATCCAGATCCTGATGTT+TGG | 0.423586 | 4.2:+92839738 | MS.gene053228:CDS |
| GACAAGATTCGACTTGGAAG+AGG | 0.446979 | 4.2:+92838984 | MS.gene053228:CDS |
| AATTACTGATCAAAATTGAA+TGG | 0.456051 | 4.2:-92839799 | None:intergenic |
| TGGAGGCACCAACTACTTCA+TGG | 0.458308 | 4.2:+92836806 | MS.gene053228:CDS |
| GAATTCCAAACATCAGGATC+TGG | 0.468947 | 4.2:-92839743 | None:intergenic |
| GCATCTATCAGCCGGAATAC+CGG | 0.472953 | 4.2:+92839045 | MS.gene053228:CDS |
| TAAACTCACAGATGCAAGCT+TGG | 0.474451 | 4.2:+92838455 | MS.gene053228:CDS |
| ATGCAAGCTTGGGTATCATC+TGG | 0.498776 | 4.2:+92838466 | MS.gene053228:CDS |
| CTTCCAAGTCGAATCTTGTC+CGG | 0.502514 | 4.2:-92838981 | None:intergenic |
| CACAGAGTGATGTAGAGTCT+TGG | 0.506993 | 4.2:+92838401 | MS.gene053228:CDS |
| TTCCAGCGTTCAACATTTGG+TGG | 0.512613 | 4.2:+92839432 | MS.gene053228:CDS |
| TCACAAGCACAAGCAACACT+AGG | 0.523148 | 4.2:+92839399 | MS.gene053228:CDS |
| AATTGGAACCTGTTTGCGAA+GGG | 0.527546 | 4.2:-92836833 | None:intergenic |
| AAACTCACAGATGCAAGCTT+GGG | 0.538296 | 4.2:+92838456 | MS.gene053228:CDS |
| CACAAGCACAAGCAACACTA+GGG | 0.539981 | 4.2:+92839400 | MS.gene053228:CDS |
| TGAAGTAGTTGGTGCCTCCA+TGG | 0.542060 | 4.2:-92836803 | None:intergenic |
| AGGGAATCCCATGAAGTAGT+TGG | 0.561034 | 4.2:-92836814 | None:intergenic |
| GGAGGCACCAACTACTTCAT+GGG | 0.562145 | 4.2:+92836807 | MS.gene053228:CDS |
| TAATTGGAACCTGTTTGCGA+AGG | 0.570672 | 4.2:-92836834 | None:intergenic |
| TGATATCTTGAAGAATCTCT+TGG | 0.571489 | 4.2:-92838525 | None:intergenic |
| AAGAGAATGCATCTATCAGC+CGG | 0.572204 | 4.2:+92839037 | MS.gene053228:CDS |
| TGGATGAAATCTGTGACTGC+AGG | 0.587647 | 4.2:-92839779 | None:intergenic |
| TGACCGGACAAGATTCGACT+TGG | 0.590350 | 4.2:+92838978 | MS.gene053228:CDS |
| ATTCCTGTGCTGCAGATGGA+CGG | 0.597836 | 4.2:+92839369 | MS.gene053228:intron |
| CGTTAGCAGTCGCCTCCCTA+CGG | 0.603946 | 4.2:+92839476 | MS.gene053228:CDS |
| ACAAGATTCGACTTGGAAGA+GGG | 0.619688 | 4.2:+92838985 | MS.gene053228:CDS |
| TGCCACCAAATGTTGAACGC+TGG | 0.639751 | 4.2:-92839434 | None:intergenic |
| ATGTAGAGTCTTGGATTGAG+CGG | 0.645281 | 4.2:+92838410 | MS.gene053228:CDS |
| AGATTCGACTTGGAAGAGGG+TGG | 0.664769 | 4.2:+92838988 | MS.gene053228:CDS |
| CAAGCTTGGGTATCATCTGG+CGG | 0.666201 | 4.2:+92838469 | MS.gene053228:CDS |
| GATTCTTCAAGATATCACTC+AGG | 0.673183 | 4.2:+92838531 | MS.gene053228:CDS |
| ATAAGAGACATACCGTAGGG+AGG | 0.681724 | 4.2:-92839488 | None:intergenic |
| ACAAGCACAAGCAACACTAG+GGG | 0.698539 | 4.2:+92839401 | MS.gene053228:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTACAACTTATAATTAT+AGG | - | chr4.2:92837796-92837815 | None:intergenic | 10.0% |
| !!! | AATATTCATATAATTGATTT+TGG | - | chr4.2:92837140-92837159 | None:intergenic | 10.0% |
| !!! | TTTAAATATTTGAAATGTTT+TGG | + | chr4.2:92837475-92837494 | MS.gene053228:intron | 10.0% |
| !! | TAAACCAAGATATATAAATA+TGG | - | chr4.2:92838089-92838108 | None:intergenic | 15.0% |
| !!! | AAAATGTAAAAGTGATTTTA+TGG | + | chr4.2:92837224-92837243 | MS.gene053228:intron | 15.0% |
| !!! | AAGTTTTGAAAAAAAAAAAG+TGG | - | chr4.2:92838657-92838676 | None:intergenic | 15.0% |
| !!! | AGTTTTGAAAAAAAAAAAGT+GGG | - | chr4.2:92838656-92838675 | None:intergenic | 15.0% |
| !!! | ATTCAAGTTAAAATCAATTA+TGG | + | chr4.2:92837112-92837131 | MS.gene053228:intron | 15.0% |
| !!! | ATTGATTTTAACTTGAATAT+AGG | - | chr4.2:92837110-92837129 | None:intergenic | 15.0% |
| !! | AACAATATAGTTTAATCACA+AGG | - | chr4.2:92838603-92838622 | None:intergenic | 20.0% |
| !! | AACAATCTTGATTTCTAATT+AGG | + | chr4.2:92838045-92838064 | MS.gene053228:intron | 20.0% |
| !! | AAGATTGTTTAATATATCAC+CGG | - | chr4.2:92838034-92838053 | None:intergenic | 20.0% |
| !! | AATAATGATCATAAAAGACT+AGG | + | chr4.2:92838143-92838162 | MS.gene053228:intron | 20.0% |
| !! | CTTAAATGTAATTAAATTGC+AGG | + | chr4.2:92838882-92838901 | MS.gene053228:intron | 20.0% |
| !!! | AAAATTAAGTCTGAAATGTT+TGG | - | chr4.2:92837287-92837306 | None:intergenic | 20.0% |
| !!! | AAATTTTAAGCACAGTAAAT+TGG | + | chr4.2:92839615-92839634 | MS.gene053228:intron | 20.0% |
| !!! | ACATTTCAGACTTAATTTTA+CGG | + | chr4.2:92837288-92837307 | MS.gene053228:intron | 20.0% |
| !!! | TGGAATTGGATATTTTTTAT+TGG | + | chr4.2:92838166-92838185 | MS.gene053228:intron | 20.0% |
| !!! | TTTAAAACTATCATTGTTCT+TGG | + | chr4.2:92839258-92839277 | MS.gene053228:intron | 20.0% |
| ! | AAAATCGAAACTTTAACACA+CGG | - | chr4.2:92836930-92836949 | None:intergenic | 25.0% |
| ! | AAACTTACACTCATTTCTTA+AGG | + | chr4.2:92837444-92837463 | MS.gene053228:intron | 25.0% |
| ! | AACATAAAAACATGAGAAAG+GGG | - | chr4.2:92836864-92836883 | None:intergenic | 25.0% |
| ! | ACAACATAAAAACATGAGAA+AGG | - | chr4.2:92836866-92836885 | None:intergenic | 25.0% |
| ! | ATGATCATGCTATTATCATT+AGG | - | chr4.2:92838117-92838136 | None:intergenic | 25.0% |
| ! | ATTCGATACAATCTTCAATT+TGG | + | chr4.2:92839329-92839348 | MS.gene053228:intron | 25.0% |
| ! | CAACATAAAAACATGAGAAA+GGG | - | chr4.2:92836865-92836884 | None:intergenic | 25.0% |
| ! | CGAATTTCAAAGAAAAACAA+AGG | - | chr4.2:92839314-92839333 | None:intergenic | 25.0% |
| ! | GAATATTAGAAAGTTTGATG+AGG | + | chr4.2:92837153-92837172 | MS.gene053228:intron | 25.0% |
| ! | GATGACTACTACTAAAAAAA+AGG | + | chr4.2:92839573-92839592 | MS.gene053228:intron | 25.0% |
| ! | GCATTAGATAGAAACTTTAT+AGG | + | chr4.2:92837853-92837872 | MS.gene053228:intron | 25.0% |
| ! | TGATCATGCTATTATCATTA+GGG | - | chr4.2:92838116-92838135 | None:intergenic | 25.0% |
| ! | TTATTTCGCAGACAAAAATT+AGG | - | chr4.2:92837566-92837585 | None:intergenic | 25.0% |
| ! | TTCGATACAATCTTCAATTT+GGG | + | chr4.2:92839330-92839349 | MS.gene053228:intron | 25.0% |
| ! | TTGGCCATATTTATATATCT+TGG | + | chr4.2:92838082-92838101 | MS.gene053228:intron | 25.0% |
| !! | AAAGTTTCGATTTTTCTTTC+TGG | + | chr4.2:92836936-92836955 | MS.gene053228:intron | 25.0% |
| !! | AAGTTTCGATTTTTCTTTCT+GGG | + | chr4.2:92836937-92836956 | MS.gene053228:intron | 25.0% |
| !! | ATGTAAAAGTGATTTTATGG+TGG | + | chr4.2:92837227-92837246 | MS.gene053228:intron | 25.0% |
| !! | GTTTAAGTTAGAATTCATCA+TGG | + | chr4.2:92837329-92837348 | MS.gene053228:intron | 25.0% |
| !! | TGGGAATATATGGATTAAAA+AGG | - | chr4.2:92839129-92839148 | None:intergenic | 25.0% |
| !! | TGTAAGTTTAATTTCACTCT+AGG | - | chr4.2:92837433-92837452 | None:intergenic | 25.0% |
| !! | TGTTTAAAAGTACATGATCA+GGG | + | chr4.2:92837641-92837660 | MS.gene053228:intron | 25.0% |
| !! | TTGTTTAAAAGTACATGATC+AGG | + | chr4.2:92837640-92837659 | MS.gene053228:intron | 25.0% |
| !! | TTTTCTCAATTTGTCTTTGA+TGG | + | chr4.2:92836961-92836980 | MS.gene053228:intron | 25.0% |
| !! | TTTTGTCTGCGAAATAAATA+AGG | + | chr4.2:92837569-92837588 | MS.gene053228:intron | 25.0% |
| !!! | ACGATTTTAAAGAATTTGAC+CGG | + | chr4.2:92838962-92838981 | MS.gene053228:CDS | 25.0% |
| !!! | ACTTGTTATGTTAGAACTTT+CGG | + | chr4.2:92839215-92839234 | MS.gene053228:intron | 25.0% |
| !!! | ATTTTAAGTGAAGAACAACA+CGG | + | chr4.2:92838707-92838726 | MS.gene053228:intron | 25.0% |
| !!! | ATTTTTTATTGGCTTGAAGA+AGG | + | chr4.2:92838177-92838196 | MS.gene053228:intron | 25.0% |
| !!! | GGTTTTGAATGAATTGATTT+TGG | + | chr4.2:92837189-92837208 | MS.gene053228:intron | 25.0% |
| AAAGTGGGATTACAAATTTC+AGG | - | chr4.2:92838641-92838660 | None:intergenic | 30.0% | |
| AAATCGAAACTTTAACACAC+GGG | - | chr4.2:92836929-92836948 | None:intergenic | 30.0% | |
| AACATGCACTAAGTTATGAT+AGG | - | chr4.2:92837040-92837059 | None:intergenic | 30.0% | |
| AAGAAAACTTGAAGCTCAAT+TGG | + | chr4.2:92838315-92838334 | MS.gene053228:CDS | 30.0% | |
| AATGATCATAAAAGACTAGG+TGG | + | chr4.2:92838146-92838165 | MS.gene053228:intron | 30.0% | |
| AATTAGGTATACTTCTAACC+TGG | - | chr4.2:92837550-92837569 | None:intergenic | 30.0% | |
| ACTCAGGTATTCAATGTTAA+TGG | + | chr4.2:92838547-92838566 | MS.gene053228:intron | 30.0% | |
| ATCATAACTTAGTGCATGTT+TGG | + | chr4.2:92837040-92837059 | MS.gene053228:intron | 30.0% | |
| ATGAGAAAGGGGATAATAAT+TGG | - | chr4.2:92836853-92836872 | None:intergenic | 30.0% | |
| CGTAGACAATGAACAAAATT+AGG | - | chr4.2:92838753-92838772 | None:intergenic | 30.0% | |
| GATAATCTAGTTATCATGGA+TGG | + | chr4.2:92837683-92837702 | MS.gene053228:intron | 30.0% | |
| GTACGATAATCTAGTTATCA+TGG | + | chr4.2:92837679-92837698 | MS.gene053228:intron | 30.0% | |
| TCTACCAATCTTTCAACAAA+AGG | + | chr4.2:92838370-92838389 | MS.gene053228:CDS | 30.0% | |
| TGATATCTTGAAGAATCTCT+TGG | - | chr4.2:92838528-92838547 | None:intergenic | 30.0% | |
| TTAGTGATATTGTAAGCTAG+TGG | + | chr4.2:92838675-92838694 | MS.gene053228:intron | 30.0% | |
| TTATGTTAGAACTTTCGGAA+TGG | + | chr4.2:92839220-92839239 | MS.gene053228:intron | 30.0% | |
| TTTAATCCATATATTCCCAG+TGG | + | chr4.2:92839130-92839149 | MS.gene053228:intron | 30.0% | |
| ! | AAGTTTAATTTCACTCTAGG+AGG | - | chr4.2:92837430-92837449 | None:intergenic | 30.0% |
| ! | ATCACCTTTTGTTGAAAGAT+TGG | - | chr4.2:92838377-92838396 | None:intergenic | 30.0% |
| ! | TCAATTTGTCTTTGATGGAT+GGG | + | chr4.2:92836966-92836985 | MS.gene053228:intron | 30.0% |
| !!! | GTTGTTTTTATCTTCCTTTC+TGG | + | chr4.2:92838213-92838232 | MS.gene053228:intron | 30.0% |
| !!! | TTAGGCGTTGTTTTTTTCTT+TGG | + | chr4.2:92838063-92838082 | MS.gene053228:intron | 30.0% |
| AAAGGAATTCTTCGAAAAGC+AGG | - | chr4.2:92839296-92839315 | None:intergenic | 35.0% | |
| AACAACACGGAAAGAACATA+AGG | + | chr4.2:92838720-92838739 | MS.gene053228:intron | 35.0% | |
| AACTTTCCGTTTCTTAGACA+AGG | + | chr4.2:92838242-92838261 | MS.gene053228:intron | 35.0% | |
| AGTAGTTACTAGAGTTGCAA+TGG | + | chr4.2:92837890-92837909 | MS.gene053228:intron | 35.0% | |
| ATGATAAGAGACATACCGTA+GGG | - | chr4.2:92839494-92839513 | None:intergenic | 35.0% | |
| ATGGGGAATGAATTCATCAT+TGG | + | chr4.2:92836984-92837003 | MS.gene053228:intron | 35.0% | |
| CATAAAAGACTAGGTGGAAT+TGG | + | chr4.2:92838152-92838171 | MS.gene053228:intron | 35.0% | |
| CTCAATTTGTCTTTGATGGA+TGG | + | chr4.2:92836965-92836984 | MS.gene053228:intron | 35.0% | |
| GACTCAAATTAACTCTCTGT+AGG | - | chr4.2:92837611-92837630 | None:intergenic | 35.0% | |
| GATACAATCTTCAATTTGGG+TGG | + | chr4.2:92839333-92839352 | MS.gene053228:intron | 35.0% | |
| GATCACAGAAAGCAAAAAAG+AGG | - | chr4.2:92837018-92837037 | None:intergenic | 35.0% | |
| GATTCTTCAAGATATCACTC+AGG | + | chr4.2:92838531-92838550 | MS.gene053228:CDS | 35.0% | |
| TCCTAGCTAACATAACAATG+TGG | - | chr4.2:92839166-92839185 | None:intergenic | 35.0% | |
| TGATAGATGCATTCTCTTTC+AGG | - | chr4.2:92839035-92839054 | None:intergenic | 35.0% | |
| TGATGAGGTCTTGCAAAAAT+TGG | + | chr4.2:92837168-92837187 | MS.gene053228:intron | 35.0% | |
| TGATTTGATGTAGAAATGCC+AGG | + | chr4.2:92837529-92837548 | MS.gene053228:intron | 35.0% | |
| TTCTCTTACGTAATAGTGAG+TGG | + | chr4.2:92837259-92837278 | MS.gene053228:intron | 35.0% | |
| TTTCCTGAATTCCAAACATC+AGG | - | chr4.2:92839752-92839771 | None:intergenic | 35.0% | |
| ! | ACTTAGTGCATGTTTGGTTT+CGG | + | chr4.2:92837046-92837065 | MS.gene053228:intron | 35.0% |
| ! | CAATTTGTCTTTGATGGATG+GGG | + | chr4.2:92836967-92836986 | MS.gene053228:intron | 35.0% |
| ! | TTTAATTTCACTCTAGGAGG+AGG | - | chr4.2:92837427-92837446 | None:intergenic | 35.0% |
| ! | TTTTTCCCACAATCTTTTGC+AGG | + | chr4.2:92838291-92838310 | MS.gene053228:intron | 35.0% |
| !!! | GGTGTAGGAATTTGGTTTTT+TGG | + | chr4.2:92837704-92837723 | MS.gene053228:intron | 35.0% |
| !!! | TCTCTTATCATCGTCGATTT+TGG | + | chr4.2:92839503-92839522 | MS.gene053228:intron | 35.0% |
| AAACTCACAGATGCAAGCTT+GGG | + | chr4.2:92838456-92838475 | MS.gene053228:CDS | 40.0% | |
| AACTCGAAATATGAGCTGTG+TGG | + | chr4.2:92839652-92839671 | MS.gene053228:intron | 40.0% | |
| AAGAGAATGCATCTATCAGC+CGG | + | chr4.2:92839037-92839056 | MS.gene053228:CDS | 40.0% | |
| AATTGGAACCTGTTTGCGAA+GGG | - | chr4.2:92836836-92836855 | None:intergenic | 40.0% | |
| AGCATTCCACTGGGAATATA+TGG | - | chr4.2:92839139-92839158 | None:intergenic | 40.0% | |
| ATGTAGAGTCTTGGATTGAG+CGG | + | chr4.2:92838410-92838429 | MS.gene053228:CDS | 40.0% | |
| CTAGTTATCATGGATGGTGT+AGG | + | chr4.2:92837689-92837708 | MS.gene053228:intron | 40.0% | |
| GAATTCCAAACATCAGGATC+TGG | - | chr4.2:92839746-92839765 | None:intergenic | 40.0% | |
| GAGAATCTGTTGCTAGGTTT+AGG | + | chr4.2:92837500-92837519 | MS.gene053228:intron | 40.0% | |
| GATGATAAGAGACATACCGT+AGG | - | chr4.2:92839495-92839514 | None:intergenic | 40.0% | |
| GCATATGTGAATGGCGAAAA+GGG | - | chr4.2:92839543-92839562 | None:intergenic | 40.0% | |
| GCATCTGTGAGTTTACTTGT+TGG | - | chr4.2:92838450-92838469 | None:intergenic | 40.0% | |
| GCCACATTGTTATGTTAGCT+AGG | + | chr4.2:92839162-92839181 | MS.gene053228:intron | 40.0% | |
| TAAACTCACAGATGCAAGCT+TGG | + | chr4.2:92838455-92838474 | MS.gene053228:CDS | 40.0% | |
| TAATTGGAACCTGTTTGCGA+AGG | - | chr4.2:92836837-92836856 | None:intergenic | 40.0% | |
| TCATGGATGGTGTAGGAATT+TGG | + | chr4.2:92837696-92837715 | MS.gene053228:intron | 40.0% | |
| TCTTGCCTGCAAAAGATTGT+GGG | - | chr4.2:92838299-92838318 | None:intergenic | 40.0% | |
| TTCAGTCTCGCATATGTGAA+TGG | - | chr4.2:92839552-92839571 | None:intergenic | 40.0% | |
| TTCTTGCCTGCAAAAGATTG+TGG | - | chr4.2:92838300-92838319 | None:intergenic | 40.0% | |
| TTGGATGAGAATCTGTTGCT+AGG | + | chr4.2:92837494-92837513 | MS.gene053228:intron | 40.0% | |
| ! | CAATGGAAAGCATGCAATTC+TGG | + | chr4.2:92837907-92837926 | MS.gene053228:intron | 40.0% |
| ! | CTTAGTGCATGTTTGGTTTC+GGG | + | chr4.2:92837047-92837066 | MS.gene053228:intron | 40.0% |
| ! | GATCCTGATGTTTGGAATTC+AGG | + | chr4.2:92839746-92839765 | MS.gene053228:CDS | 40.0% |
| ! | GCTGTGTGGTCTTGATTAAA+TGG | + | chr4.2:92839666-92839685 | MS.gene053228:intron | 40.0% |
| ! | GGAAAGTTTTCTTGCCAGAA+AGG | - | chr4.2:92838230-92838249 | None:intergenic | 40.0% |
| ! | TTAGTGCATGTTTGGTTTCG+GGG | + | chr4.2:92837048-92837067 | MS.gene053228:intron | 40.0% |
| ! | TTTTGCATCACTGACATGTC+CGG | - | chr4.2:92839067-92839086 | None:intergenic | 40.0% |
| !! | ACAAGATTCGACTTGGAAGA+GGG | + | chr4.2:92838985-92839004 | MS.gene053228:CDS | 40.0% |
| !! | CAATTTGGGTGGTCTTATTC+TGG | + | chr4.2:92839344-92839363 | MS.gene053228:intron | 40.0% |
| ACAAGCACAAGCAACACTAG+GGG | + | chr4.2:92839401-92839420 | MS.gene053228:CDS | 45.0% | |
| AGGGAATCCCATGAAGTAGT+TGG | - | chr4.2:92836817-92836836 | None:intergenic | 45.0% | |
| ATAAGAGACATACCGTAGGG+AGG | - | chr4.2:92839491-92839510 | None:intergenic | 45.0% | |
| ATGCAAGCTTGGGTATCATC+TGG | + | chr4.2:92838466-92838485 | MS.gene053228:CDS | 45.0% | |
| ATGCAGGAAATTCGTGCAGT+CGG | - | chr4.2:92839705-92839724 | None:intergenic | 45.0% | |
| CACAAGCACAAGCAACACTA+GGG | + | chr4.2:92839400-92839419 | MS.gene053228:CDS | 45.0% | |
| CACAGAGTGATGTAGAGTCT+TGG | + | chr4.2:92838401-92838420 | MS.gene053228:CDS | 45.0% | |
| CGCATATGTGAATGGCGAAA+AGG | - | chr4.2:92839544-92839563 | None:intergenic | 45.0% | |
| CTTCCAAGTCGAATCTTGTC+CGG | - | chr4.2:92838984-92839003 | None:intergenic | 45.0% | |
| GGAATCCAGATCCTGATGTT+TGG | + | chr4.2:92839738-92839757 | MS.gene053228:CDS | 45.0% | |
| GTCTTCCAGCGTTCAACATT+TGG | + | chr4.2:92839429-92839448 | MS.gene053228:CDS | 45.0% | |
| TATTCCATTACACCGGGACT+CGG | - | chr4.2:92838011-92838030 | None:intergenic | 45.0% | |
| TCACAAGCACAAGCAACACT+AGG | + | chr4.2:92839399-92839418 | MS.gene053228:CDS | 45.0% | |
| TCACCGGTATTCCATTACAC+CGG | - | chr4.2:92838018-92838037 | None:intergenic | 45.0% | |
| TGCTCGCCTTGTCTAAGAAA+CGG | - | chr4.2:92838251-92838270 | None:intergenic | 45.0% | |
| TGGATGAAATCTGTGACTGC+AGG | - | chr4.2:92839782-92839801 | None:intergenic | 45.0% | |
| TTCCAGCGTTCAACATTTGG+TGG | + | chr4.2:92839432-92839451 | MS.gene053228:CDS | 45.0% | |
| ! | ATGTGGCTAAAGCATTCCAC+TGG | - | chr4.2:92839149-92839168 | None:intergenic | 45.0% |
| ! | TGTGGCTAAAGCATTCCACT+GGG | - | chr4.2:92839148-92839167 | None:intergenic | 45.0% |
| !! | GACAAGATTCGACTTGGAAG+AGG | + | chr4.2:92838984-92839003 | MS.gene053228:CDS | 45.0% |
| !!! | TTTTTTTGGATGCCGAGTCC+CGG | + | chr4.2:92837996-92838015 | MS.gene053228:intron | 45.0% |
| !!! | ATTTTTTAATATAGTTTTTT+TGG | + | chr4.2:92837982-92838001 | MS.gene053228:intron | 5.0% |
| ATCATCTGGCGGCTCAGATA+TGG | + | chr4.2:92838480-92838499 | MS.gene053228:CDS | 50.0% | |
| ATGGGATTCCCTTCGCAAAC+AGG | + | chr4.2:92836825-92836844 | MS.gene053228:CDS | 50.0% | |
| ATTCCTGTGCTGCAGATGGA+CGG | + | chr4.2:92839369-92839388 | MS.gene053228:intron | 50.0% | |
| CAAGCTTGGGTATCATCTGG+CGG | + | chr4.2:92838469-92838488 | MS.gene053228:CDS | 50.0% | |
| CACCGGTATTCCATTACACC+GGG | - | chr4.2:92838017-92838036 | None:intergenic | 50.0% | |
| CACTGACATGTCCGGTATTC+CGG | - | chr4.2:92839059-92839078 | None:intergenic | 50.0% | |
| GCATCTATCAGCCGGAATAC+CGG | + | chr4.2:92839045-92839064 | MS.gene053228:CDS | 50.0% | |
| GGTTATTCCTGTGCTGCAGA+TGG | + | chr4.2:92839365-92839384 | MS.gene053228:intron | 50.0% | |
| TGACCGGACAAGATTCGACT+TGG | + | chr4.2:92838978-92838997 | MS.gene053228:CDS | 50.0% | |
| TGCCACCAAATGTTGAACGC+TGG | - | chr4.2:92839437-92839456 | None:intergenic | 50.0% | |
| ! | GTCCCGGTGTAATGGAATAC+CGG | + | chr4.2:92838012-92838031 | MS.gene053228:intron | 50.0% |
| ! | TCCTGCATTTTCCGACTGCA+GGG | + | chr4.2:92839717-92839736 | MS.gene053228:intron | 50.0% |
| ! | TTCCTGCATTTTCCGACTGC+AGG | + | chr4.2:92839716-92839735 | MS.gene053228:intron | 50.0% |
| !! | AGATTCGACTTGGAAGAGGG+TGG | + | chr4.2:92838988-92839007 | MS.gene053228:CDS | 50.0% |
| !! | GGAGGCACCAACTACTTCAT+GGG | + | chr4.2:92836807-92836826 | MS.gene053228:CDS | 50.0% |
| !! | TGGAGGCACCAACTACTTCA+TGG | + | chr4.2:92836806-92836825 | MS.gene053228:CDS | 50.0% |
| GGATCTGGATTCCCTGCAGT+CGG | - | chr4.2:92839731-92839750 | None:intergenic | 55.0% | |
| TCCCTGCAGTCGGAAAATGC+AGG | - | chr4.2:92839721-92839740 | None:intergenic | 55.0% | |
| ACACCGTCCATCTGCAGCAC+AGG | - | chr4.2:92839375-92839394 | None:intergenic | 60.0% | |
| CGTTAGCAGTCGCCTCCCTA+CGG | + | chr4.2:92839476-92839495 | MS.gene053228:CDS | 60.0% | |
| GATGCCGAGTCCCGGTGTAA+TGG | + | chr4.2:92838004-92838023 | MS.gene053228:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 92836805 | 92839812 | 92836805 | ID=MS.gene053228 |
| chr4.2 | mRNA | 92836805 | 92839812 | 92836805 | ID=MS.gene053228.t1;Parent=MS.gene053228 |
| chr4.2 | exon | 92836805 | 92836846 | 92836805 | ID=MS.gene053228.t1.exon1;Parent=MS.gene053228.t1 |
| chr4.2 | CDS | 92836805 | 92836846 | 92836805 | ID=cds.MS.gene053228.t1;Parent=MS.gene053228.t1 |
| chr4.2 | exon | 92838313 | 92838552 | 92838313 | ID=MS.gene053228.t1.exon2;Parent=MS.gene053228.t1 |
| chr4.2 | CDS | 92838313 | 92838552 | 92838313 | ID=cds.MS.gene053228.t1;Parent=MS.gene053228.t1 |
| chr4.2 | exon | 92838904 | 92839071 | 92838904 | ID=MS.gene053228.t1.exon3;Parent=MS.gene053228.t1 |
| chr4.2 | CDS | 92838904 | 92839071 | 92838904 | ID=cds.MS.gene053228.t1;Parent=MS.gene053228.t1 |
| chr4.2 | exon | 92839384 | 92839497 | 92839384 | ID=MS.gene053228.t1.exon4;Parent=MS.gene053228.t1 |
| chr4.2 | CDS | 92839384 | 92839497 | 92839384 | ID=cds.MS.gene053228.t1;Parent=MS.gene053228.t1 |
| chr4.2 | exon | 92839738 | 92839812 | 92839738 | ID=MS.gene053228.t1.exon5;Parent=MS.gene053228.t1 |
| chr4.2 | CDS | 92839738 | 92839812 | 92839738 | ID=cds.MS.gene053228.t1;Parent=MS.gene053228.t1 |
| Gene Sequence |
| Protein sequence |
