Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08108.t1 | KEH34138.1 | 90.3 | 186 | 18 | 0 | 281 | 466 | 125 | 310 | 3.70E-78 | 302.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08108.t1 | Q5XF09 | 78.3 | 180 | 39 | 0 | 284 | 463 | 129 | 308 | 1.0e-68 | 262.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08108.t1 | A0A072UYE0 | 90.3 | 186 | 18 | 0 | 281 | 466 | 125 | 310 | 2.7e-78 | 302.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049580 | MS.gene08108 | 0.8167 | 4.83E-52 | -1.69E-46 |
| MS.gene050414 | MS.gene08108 | 0.801131 | 1.04E-48 | -1.69E-46 |
| MS.gene051902 | MS.gene08108 | 0.800722 | 1.26E-48 | -1.69E-46 |
| MS.gene052242 | MS.gene08108 | -0.819104 | 1.38E-52 | -1.69E-46 |
| MS.gene052793 | MS.gene08108 | 0.808919 | 2.44E-50 | -1.69E-46 |
| MS.gene052818 | MS.gene08108 | -0.822107 | 2.83E-53 | -1.69E-46 |
| MS.gene053045 | MS.gene08108 | 0.8179 | 2.59E-52 | -1.69E-46 |
| MS.gene053678 | MS.gene08108 | 0.811189 | 7.93E-51 | -1.69E-46 |
| MS.gene054222 | MS.gene08108 | 0.823998 | 1.02E-53 | -1.69E-46 |
| MS.gene05548 | MS.gene08108 | 0.812943 | 3.29E-51 | -1.69E-46 |
| MS.gene057576 | MS.gene08108 | 0.849367 | 3.38E-60 | -1.69E-46 |
| MS.gene057584 | MS.gene08108 | 0.834491 | 2.91E-56 | -1.69E-46 |
| MS.gene05781 | MS.gene08108 | 0.805158 | 1.53E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene08108 | 0.800943 | 1.14E-48 | -1.69E-46 |
| MS.gene058008 | MS.gene08108 | 0.800658 | 1.30E-48 | -1.69E-46 |
| MS.gene058074 | MS.gene08108 | 0.814804 | 1.28E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08108.t1 | MTR_3g462070 | 90.323 | 186 | 18 | 0 | 281 | 466 | 125 | 310 | 1.64e-108 | 324 |
| MS.gene08108.t1 | MTR_5g081710 | 75.410 | 183 | 45 | 0 | 281 | 463 | 124 | 306 | 5.84e-91 | 279 |
| MS.gene08108.t1 | MTR_3g070000 | 79.518 | 166 | 34 | 0 | 298 | 463 | 157 | 322 | 5.36e-89 | 275 |
| MS.gene08108.t1 | MTR_4g018760 | 67.978 | 178 | 57 | 0 | 284 | 461 | 131 | 308 | 2.33e-76 | 241 |
| MS.gene08108.t1 | MTR_8g090130 | 66.854 | 178 | 59 | 0 | 284 | 461 | 130 | 307 | 5.98e-74 | 235 |
| MS.gene08108.t1 | MTR_4g101860 | 64.671 | 167 | 59 | 0 | 297 | 463 | 184 | 350 | 3.16e-62 | 206 |
| MS.gene08108.t1 | MTR_7g068350 | 39.313 | 262 | 95 | 3 | 81 | 320 | 2 | 221 | 4.82e-45 | 157 |
| MS.gene08108.t1 | MTR_8g447360 | 86.076 | 79 | 11 | 0 | 60 | 138 | 1 | 79 | 5.74e-38 | 134 |
| MS.gene08108.t1 | MTR_5g098775 | 72.059 | 68 | 19 | 0 | 229 | 296 | 127 | 194 | 2.14e-24 | 100 |
| MS.gene08108.t1 | MTR_3g072380 | 34.536 | 194 | 114 | 6 | 268 | 459 | 124 | 306 | 6.08e-19 | 88.2 |
| MS.gene08108.t1 | MTR_1g030320 | 30.052 | 193 | 126 | 3 | 268 | 460 | 123 | 306 | 5.20e-18 | 85.5 |
| MS.gene08108.t1 | MTR_0011s0320 | 33.742 | 163 | 104 | 1 | 297 | 459 | 147 | 305 | 1.04e-16 | 81.6 |
| MS.gene08108.t1 | MTR_3g107470 | 32.164 | 171 | 106 | 3 | 297 | 464 | 151 | 314 | 2.87e-15 | 77.4 |
| MS.gene08108.t1 | MTR_6g015220 | 39.773 | 176 | 100 | 3 | 54 | 228 | 1 | 171 | 3.74e-15 | 73.6 |
| MS.gene08108.t1 | MTR_4g114360 | 32.370 | 173 | 107 | 3 | 297 | 466 | 147 | 312 | 2.65e-14 | 74.3 |
| MS.gene08108.t1 | MTR_7g110380 | 30.058 | 173 | 111 | 4 | 297 | 466 | 148 | 313 | 2.05e-13 | 72.0 |
| MS.gene08108.t1 | MTR_4g123900 | 30.061 | 163 | 104 | 4 | 305 | 464 | 152 | 307 | 6.23e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08108.t1 | AT3G11320 | 78.333 | 180 | 39 | 0 | 284 | 463 | 129 | 308 | 7.04e-91 | 279 |
| MS.gene08108.t1 | AT5G05820 | 75.138 | 181 | 45 | 0 | 284 | 464 | 129 | 309 | 9.75e-88 | 271 |
| MS.gene08108.t1 | AT3G10290 | 64.045 | 178 | 64 | 0 | 284 | 461 | 176 | 353 | 3.25e-71 | 229 |
| MS.gene08108.t1 | AT5G04160 | 61.170 | 188 | 71 | 1 | 276 | 461 | 120 | 307 | 1.89e-70 | 226 |
| MS.gene08108.t1 | AT1G12500 | 60.843 | 166 | 65 | 0 | 298 | 463 | 191 | 356 | 3.53e-64 | 211 |
| MS.gene08108.t1 | AT1G21870 | 34.392 | 189 | 111 | 6 | 273 | 459 | 129 | 306 | 5.34e-19 | 88.6 |
| MS.gene08108.t1 | AT1G77610 | 30.151 | 199 | 130 | 3 | 268 | 466 | 118 | 307 | 1.75e-18 | 87.0 |
| MS.gene08108.t1 | AT5G25400 | 33.333 | 171 | 104 | 3 | 297 | 464 | 151 | 314 | 3.21e-16 | 80.1 |
| MS.gene08108.t1 | AT4G32390 | 32.961 | 179 | 109 | 4 | 289 | 464 | 144 | 314 | 5.31e-15 | 76.6 |
| MS.gene08108.t1 | AT5G11230 | 33.333 | 168 | 104 | 2 | 297 | 462 | 151 | 312 | 5.60e-15 | 76.6 |
| MS.gene08108.t1 | AT2G25520 | 32.961 | 179 | 109 | 4 | 289 | 464 | 144 | 314 | 6.90e-14 | 73.2 |
| MS.gene08108.t1 | AT3G17430 | 28.902 | 173 | 113 | 4 | 297 | 466 | 145 | 310 | 1.06e-12 | 69.7 |
| MS.gene08108.t1 | AT3G17430 | 28.902 | 173 | 113 | 4 | 297 | 466 | 145 | 310 | 1.06e-12 | 69.7 |
| MS.gene08108.t1 | AT1G53660 | 26.316 | 171 | 114 | 3 | 298 | 465 | 58 | 219 | 5.73e-12 | 65.9 |
| MS.gene08108.t1 | AT1G48230 | 30.061 | 163 | 104 | 4 | 305 | 464 | 80 | 235 | 8.31e-12 | 66.2 |
| MS.gene08108.t1 | AT1G53660 | 26.316 | 171 | 114 | 3 | 298 | 465 | 118 | 279 | 8.79e-12 | 66.2 |
| MS.gene08108.t1 | AT1G53660 | 26.316 | 171 | 114 | 3 | 298 | 465 | 152 | 313 | 1.02e-11 | 66.6 |
| MS.gene08108.t1 | AT1G53660 | 26.786 | 168 | 111 | 3 | 298 | 462 | 170 | 328 | 1.13e-11 | 66.6 |
| MS.gene08108.t1 | AT1G48230 | 30.061 | 163 | 104 | 4 | 305 | 464 | 153 | 308 | 1.60e-11 | 66.2 |
Find 108 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCGTTTACTTCGCTTCT+TGG | 0.141379 | 3.3:-49899156 | None:intergenic |
| ATACTTGTCTGCAAAGTTTC+TGG | 0.218574 | 3.3:+49897583 | MS.gene08108:CDS |
| ACTTCCTGCTTCAATTATAA+TGG | 0.261265 | 3.3:+49898684 | MS.gene08108:CDS |
| GGTTGTTAGAGTATGAAATT+TGG | 0.302667 | 3.3:+49897549 | MS.gene08108:CDS |
| GTCATTGGAGTTATCCTATA+TGG | 0.323438 | 3.3:+49899128 | MS.gene08108:CDS |
| GCCTTTCGGTGCCGAGCTCC+AGG | 0.328166 | 3.3:-49897115 | None:intergenic |
| GGATATTCTCTTACAGTCAT+TGG | 0.334051 | 3.3:+49899113 | MS.gene08108:CDS |
| ATCATGTGAGTTTACTTTGC+TGG | 0.339547 | 3.3:+49897297 | MS.gene08108:CDS |
| ACCTTGCAAGAAACTGAGTT+TGG | 0.355465 | 3.3:+49897083 | MS.gene08108:CDS |
| GAATTTCGGTTGGGTTGGTT+TGG | 0.355734 | 3.3:+49897160 | MS.gene08108:CDS |
| AACATTCCAGTCACTGATAC+TGG | 0.356372 | 3.3:-49899089 | None:intergenic |
| AAACCTCCATGGGTGAATTT+CGG | 0.362675 | 3.3:+49897146 | MS.gene08108:CDS |
| TGAGTTTGGTTTCTCTTCCC+TGG | 0.365771 | 3.3:+49897097 | MS.gene08108:CDS |
| CTGTTTCTCCATTTGTGTGT+TGG | 0.365851 | 3.3:+49897196 | MS.gene08108:CDS |
| GCTTCTTGGCTTCACCATAT+AGG | 0.366875 | 3.3:-49899142 | None:intergenic |
| AACCACCACCAACACACAAA+TGG | 0.373614 | 3.3:-49897204 | None:intergenic |
| AGGTTTCCGTGGAGGCCTTT+CGG | 0.374326 | 3.3:-49897129 | None:intergenic |
| ATCTGGCTGTCGATGGAGAT+TGG | 0.390842 | 3.3:+49896879 | MS.gene08108:CDS |
| TACTTGTCTGCAAAGTTTCT+GGG | 0.392688 | 3.3:+49897584 | MS.gene08108:CDS |
| AAGCTTTATTGTCCTTTATG+AGG | 0.398278 | 3.3:+49897328 | MS.gene08108:CDS |
| CACTAGTGCGTTAACACTTC+AGG | 0.400906 | 3.3:+49898831 | MS.gene08108:CDS |
| ACCTGTATTCATCCTCATAA+AGG | 0.417005 | 3.3:-49897340 | None:intergenic |
| TAAGTTACATTGCAATATCA+TGG | 0.423416 | 3.3:+49895739 | MS.gene08108:CDS |
| GTATCAGTGACTGGAATGTT+AGG | 0.424874 | 3.3:+49899092 | MS.gene08108:CDS |
| CTCCATTTGTGTGTTGGTGG+TGG | 0.435072 | 3.3:+49897202 | MS.gene08108:CDS |
| TTGGAGGGAATATTTCTCTA+AGG | 0.440372 | 3.3:+49895850 | MS.gene08108:CDS |
| TCTCCATCGACAGCCAGATC+TGG | 0.443144 | 3.3:-49896875 | None:intergenic |
| CTCCATGGGTGAATTTCGGT+TGG | 0.449405 | 3.3:+49897150 | MS.gene08108:CDS |
| TAGAAGATGGAAGCTGTTGA+TGG | 0.451534 | 3.3:+49897523 | MS.gene08108:CDS |
| TCCTTTATGAGGATGAATAC+AGG | 0.453292 | 3.3:+49897339 | MS.gene08108:CDS |
| CATTGCAAACAGTGAGATCA+AGG | 0.463654 | 3.3:+49895775 | MS.gene08108:CDS |
| AATTGATAAATGGCAAAAGT+AGG | 0.465386 | 3.3:-49897365 | None:intergenic |
| TCCATGGGTGAATTTCGGTT+GGG | 0.466055 | 3.3:+49897151 | MS.gene08108:CDS |
| TCTGGCTGTCGATGGAGATT+GGG | 0.467204 | 3.3:+49896880 | MS.gene08108:CDS |
| CTCAGTTTCTTGCAAGGTGG+AGG | 0.469538 | 3.3:-49897078 | None:intergenic |
| AGTTTCTTGCAAGGTGGAGG+AGG | 0.476117 | 3.3:-49897075 | None:intergenic |
| GCATCAGTGCTACAGCAGCC+AGG | 0.476937 | 3.3:+49898467 | MS.gene08108:CDS |
| TTTCTCCATTTGTGTGTTGG+TGG | 0.479980 | 3.3:+49897199 | MS.gene08108:CDS |
| TGGGTGAATTTCGGTTGGGT+TGG | 0.481515 | 3.3:+49897155 | MS.gene08108:CDS |
| TCCTCCATTATAATTGAAGC+AGG | 0.491021 | 3.3:-49898688 | None:intergenic |
| AAACTTTGCAGACAAGTATG+AGG | 0.491723 | 3.3:-49897579 | None:intergenic |
| TGATGACTTTGTCAGGTCCT+AGG | 0.498945 | 3.3:+49899014 | MS.gene08108:intron |
| GCACTCAAAACAGTACTTCA+AGG | 0.508592 | 3.3:+49898490 | MS.gene08108:CDS |
| TTTGTTTGTCTGTGGTTGGA+GGG | 0.511923 | 3.3:+49895835 | MS.gene08108:CDS |
| CTCGGCGGAGCGGCCACCAC+CGG | 0.513621 | 3.3:+49896998 | MS.gene08108:CDS |
| GGTTTCTCTTCCCTGGAGCT+CGG | 0.514219 | 3.3:+49897104 | MS.gene08108:CDS |
| CCCTGGAGCTCGGCACCGAA+AGG | 0.520073 | 3.3:+49897114 | MS.gene08108:CDS |
| CCTTTGTCAGATATAGAAGA+TGG | 0.521828 | 3.3:+49897510 | MS.gene08108:CDS |
| CATCAGTGCTACAGCAGCCA+GGG | 0.522611 | 3.3:+49898468 | MS.gene08108:CDS |
| GATGGAAGCTGTTGATGGAT+TGG | 0.527494 | 3.3:+49897528 | MS.gene08108:CDS |
| AATCCAAATAGATGAAAACT+TGG | 0.532773 | 3.3:-49898436 | None:intergenic |
| CATTGCAATATCATGGATGA+AGG | 0.533284 | 3.3:+49895746 | MS.gene08108:CDS |
| ATTGATAAATGGCAAAAGTA+GGG | 0.533678 | 3.3:-49897364 | None:intergenic |
| CTCAAGCTGTCATGAACATA+CGG | 0.533898 | 3.3:+49897030 | MS.gene08108:CDS |
| GGCCTCCACGGAAACCTCCA+TGG | 0.536840 | 3.3:+49897135 | MS.gene08108:CDS |
| TTCACCCATGGAGGTTTCCG+TGG | 0.537706 | 3.3:-49897140 | None:intergenic |
| CGTATGTTCATGACAGCTTG+AGG | 0.538661 | 3.3:-49897029 | None:intergenic |
| GTTTGAGCTATTAATGGAGA+AGG | 0.540415 | 3.3:+49896908 | MS.gene08108:CDS |
| ATTTCGACTACACTTGGTCT+CGG | 0.541639 | 3.3:-49897420 | None:intergenic |
| GTATGTTCATGACAGCTTGA+GGG | 0.541989 | 3.3:-49897028 | None:intergenic |
| TGTGGATCTAGATCCAGATC+TGG | 0.542230 | 3.3:+49896862 | MS.gene08108:intron |
| ATCTTCTCTAGCAAGTTGAA+TGG | 0.543481 | 3.3:-49898728 | None:intergenic |
| TATGAACCTTCTTATGTACA+TGG | 0.544014 | 3.3:+49898639 | MS.gene08108:CDS |
| AGTAGGAATGCAACAGCCAC+TGG | 0.545414 | 3.3:-49898664 | None:intergenic |
| GGAGTCTTACTATCTTCTGA+AGG | 0.546672 | 3.3:+49898511 | MS.gene08108:CDS |
| ATCACAAGGACAGATCTTGA+AGG | 0.556264 | 3.3:-49896966 | None:intergenic |
| CTGGTGCCATGTACATAAGA+AGG | 0.557629 | 3.3:-49898645 | None:intergenic |
| GCTGTCATGAACATACGGAT+TGG | 0.562408 | 3.3:+49897035 | MS.gene08108:CDS |
| TTATAATTGAAGCAGGAAGT+AGG | 0.563277 | 3.3:-49898681 | None:intergenic |
| CAGGTCCTAGGAAATGCAAA+AGG | 0.569176 | 3.3:+49899026 | MS.gene08108:intron |
| CTTAACACTATGTCACATGA+TGG | 0.570651 | 3.3:+49895704 | None:intergenic |
| GATCCAGATCTGGCTGTCGA+TGG | 0.570892 | 3.3:+49896872 | MS.gene08108:intron |
| ACGCTCATTTCGACTACACT+TGG | 0.572036 | 3.3:-49897426 | None:intergenic |
| GTTTCTTGCAAGGTGGAGGA+GGG | 0.572523 | 3.3:-49897074 | None:intergenic |
| TCATGAACATACGGATTGGA+TGG | 0.576081 | 3.3:+49897039 | MS.gene08108:CDS |
| TCCTGCTTCAATTATAATGG+AGG | 0.577424 | 3.3:+49898687 | MS.gene08108:CDS |
| CGGTGGTGGCCGCTCCGCCG+AGG | 0.577521 | 3.3:-49896997 | None:intergenic |
| TATGTTCATGACAGCTTGAG+GGG | 0.578919 | 3.3:-49897027 | None:intergenic |
| AGAAATCCAGTATCAGTGAC+TGG | 0.579760 | 3.3:+49899083 | MS.gene08108:CDS |
| ACCAAACTCAGTTTCTTGCA+AGG | 0.584680 | 3.3:-49897084 | None:intergenic |
| CTTGATCTCACTGTTTGCAA+TGG | 0.586517 | 3.3:-49895774 | None:intergenic |
| TCGGCACCGAAAGGCCTCCA+CGG | 0.591551 | 3.3:+49897123 | MS.gene08108:CDS |
| CCTTTCGGTGCCGAGCTCCA+GGG | 0.591834 | 3.3:-49897114 | None:intergenic |
| GCCTCCACGGAAACCTCCAT+GGG | 0.592803 | 3.3:+49897136 | MS.gene08108:CDS |
| ACCCATGGAGGTTTCCGTGG+AGG | 0.598388 | 3.3:-49897137 | None:intergenic |
| TTGTGAAGATATCATCACTC+GGG | 0.602058 | 3.3:+49895805 | MS.gene08108:CDS |
| CCTTGTGATCTACTCTACCT+CGG | 0.602373 | 3.3:+49896980 | MS.gene08108:CDS |
| GAGTCTTACTATCTTCTGAA+GGG | 0.613422 | 3.3:+49898512 | MS.gene08108:CDS |
| GAGAAGATTCAACTATTGTG+TGG | 0.622982 | 3.3:+49898743 | MS.gene08108:CDS |
| AGGAAATGCAAAAGGAGCTG+TGG | 0.629299 | 3.3:+49899034 | MS.gene08108:CDS |
| ATAATGGAGGAAGATGTGCT+TGG | 0.629319 | 3.3:+49898700 | MS.gene08108:CDS |
| AAGGCCGTGAGTTTCAAGCT+TGG | 0.630724 | 3.3:+49896927 | MS.gene08108:CDS |
| TCTTATGTACATGGCACCAG+TGG | 0.635132 | 3.3:+49898648 | MS.gene08108:CDS |
| ACCCAACCGAAATTCACCCA+TGG | 0.636031 | 3.3:-49897152 | None:intergenic |
| AGCACCAAGCTTGAAACTCA+CGG | 0.644128 | 3.3:-49896931 | None:intergenic |
| ACTTATCTTCAACTCCACAC+TGG | 0.647725 | 3.3:+49898768 | MS.gene08108:CDS |
| CCATCTTCTATATCTGACAA+AGG | 0.653364 | 3.3:-49897510 | None:intergenic |
| CCGAGGTAGAGTAGATCACA+AGG | 0.655030 | 3.3:-49896980 | None:intergenic |
| AAACTCAGTTTCTTGCAAGG+TGG | 0.655411 | 3.3:-49897081 | None:intergenic |
| TTTGTGAAGATATCATCACT+CGG | 0.657174 | 3.3:+49895804 | MS.gene08108:CDS |
| ATGTTCATGACAGCTTGAGG+GGG | 0.666288 | 3.3:-49897026 | None:intergenic |
| CAACCGAAATTCACCCATGG+AGG | 0.675649 | 3.3:-49897149 | None:intergenic |
| ATTGCAAACAGTGAGATCAA+GGG | 0.684355 | 3.3:+49895776 | MS.gene08108:CDS |
| TGCAATATCATGGATGAAGG+TGG | 0.697609 | 3.3:+49895749 | MS.gene08108:CDS |
| TAGTCGAAATGAGCGTGATG+TGG | 0.702627 | 3.3:+49897433 | MS.gene08108:CDS |
| GTTGACAAAATATGCCAGTG+TGG | 0.706078 | 3.3:-49898782 | None:intergenic |
| TGTGATCTACTCTACCTCGG+CGG | 0.737366 | 3.3:+49896983 | MS.gene08108:CDS |
| TCTACTCTACCTCGGCGGAG+CGG | 0.743739 | 3.3:+49896988 | MS.gene08108:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATAAAGAATTTTTGT+TGG | + | chr3.3:49896099-49896118 | MS.gene08108:intron | 10.0% |
| !!! | TTTGTTATTTTTTTAATTGA+CGG | + | chr3.3:49897990-49898009 | MS.gene08108:intron | 10.0% |
| !! | AAAAAAACACACTAATAAAA+AGG | + | chr3.3:49896511-49896530 | MS.gene08108:intron | 15.0% |
| !! | AAAAAACACACTAATAAAAA+GGG | + | chr3.3:49896512-49896531 | MS.gene08108:intron | 15.0% |
| !! | AATAAAATAGGACATTAAAA+AGG | - | chr3.3:49897893-49897912 | None:intergenic | 15.0% |
| !! | TAAAAGAAAATGTAGAAAAT+TGG | + | chr3.3:49896345-49896364 | MS.gene08108:intron | 15.0% |
| !!! | CTAATTTGTACATTTTTTAT+TGG | - | chr3.3:49897926-49897945 | None:intergenic | 15.0% |
| !!! | TGATGATACTTATTTTTATT+TGG | + | chr3.3:49898940-49898959 | MS.gene08108:intron | 15.0% |
| !!! | TTTTATTAGTGTGTTTTTTT+GGG | - | chr3.3:49896511-49896530 | None:intergenic | 15.0% |
| !!! | TTTTTATTAGTGTGTTTTTT+TGG | - | chr3.3:49896512-49896531 | None:intergenic | 15.0% |
| !! | AAAAAAAAATATCGAAAACC+AGG | - | chr3.3:49896819-49896838 | None:intergenic | 20.0% |
| !! | AAGAAACTATTTCATTACAA+TGG | - | chr3.3:49898593-49898612 | None:intergenic | 20.0% |
| !! | AGAATTGTTCAATAAAACTT+AGG | + | chr3.3:49898141-49898160 | MS.gene08108:intron | 20.0% |
| !! | CAAACAAATAAGAAATTCAT+TGG | + | chr3.3:49897840-49897859 | MS.gene08108:intron | 20.0% |
| !! | GACAAAAAACAATTGATAAA+TGG | - | chr3.3:49897378-49897397 | None:intergenic | 20.0% |
| !! | GTTAAATACATTAGTATGTT+GGG | + | chr3.3:49898077-49898096 | MS.gene08108:intron | 20.0% |
| !! | TGTTAAATACATTAGTATGT+TGG | + | chr3.3:49898076-49898095 | MS.gene08108:intron | 20.0% |
| !! | TTAAATACATTAGTATGTTG+GGG | + | chr3.3:49898078-49898097 | MS.gene08108:intron | 20.0% |
| !!! | AATAGTTTCTTTGATTTTTC+AGG | + | chr3.3:49898602-49898621 | MS.gene08108:intron | 20.0% |
| !!! | ATAGTTTCTTTGATTTTTCA+GGG | + | chr3.3:49898603-49898622 | MS.gene08108:intron | 20.0% |
| !!! | ATTTGTACATTTTTTATTGG+AGG | - | chr3.3:49897923-49897942 | None:intergenic | 20.0% |
| !!! | CTTTGCTACTTATTTTTATT+TGG | + | chr3.3:49898866-49898885 | MS.gene08108:intron | 20.0% |
| !!! | GAAAAAATTGATAACTTAGT+TGG | + | chr3.3:49897950-49897969 | MS.gene08108:intron | 20.0% |
| !!! | GGAGGTATATAAAATAAAAT+AGG | - | chr3.3:49897905-49897924 | None:intergenic | 20.0% |
| !!! | TTTTAAAAAGTTGAGCAATT+TGG | + | chr3.3:49896621-49896640 | MS.gene08108:intron | 20.0% |
| ! | AAAAGTCACATTTATAACCA+AGG | + | chr3.3:49896385-49896404 | MS.gene08108:intron | 25.0% |
| ! | AAAATGTAGAAAATTGGTGA+CGG | + | chr3.3:49896351-49896370 | MS.gene08108:intron | 25.0% |
| ! | AACTATTTCATTACAATGGA+AGG | - | chr3.3:49898589-49898608 | None:intergenic | 25.0% |
| ! | AATAGCTTGATTAAAAGACA+CGG | - | chr3.3:49895883-49895902 | None:intergenic | 25.0% |
| ! | AATCCAAATAGATGAAAACT+TGG | - | chr3.3:49898439-49898458 | None:intergenic | 25.0% |
| ! | AATTGATAAATGGCAAAAGT+AGG | - | chr3.3:49897368-49897387 | None:intergenic | 25.0% |
| ! | AGTCAAAAGTTTAAGTGATT+TGG | + | chr3.3:49896123-49896142 | MS.gene08108:intron | 25.0% |
| ! | ATTGATAAATGGCAAAAGTA+GGG | - | chr3.3:49897367-49897386 | None:intergenic | 25.0% |
| ! | CTGTGATTGATCATATAAAA+TGG | + | chr3.3:49898015-49898034 | MS.gene08108:intron | 25.0% |
| ! | GAAAAAGTTTGAGCTATTAA+TGG | + | chr3.3:49896902-49896921 | MS.gene08108:CDS | 25.0% |
| ! | GTCAAAAGTTTAAGTGATTT+GGG | + | chr3.3:49896124-49896143 | MS.gene08108:intron | 25.0% |
| ! | TAAATACATTAGTATGTTGG+GGG | + | chr3.3:49898079-49898098 | MS.gene08108:intron | 25.0% |
| ! | TAAGTTACATTGCAATATCA+TGG | + | chr3.3:49895739-49895758 | MS.gene08108:CDS | 25.0% |
| ! | TATGATGATATATAAATGCC+AGG | + | chr3.3:49896307-49896326 | MS.gene08108:intron | 25.0% |
| ! | TTAAATGTCCAAAAATCTCT+CGG | + | chr3.3:49896555-49896574 | MS.gene08108:intron | 25.0% |
| ! | TTCATATTTGCAATTAACCA+AGG | - | chr3.3:49896236-49896255 | None:intergenic | 25.0% |
| !! | CAAGTTTAAAATACAATGGA+AGG | - | chr3.3:49898556-49898575 | None:intergenic | 25.0% |
| !! | CATTTTCATCCACAATAATA+AGG | - | chr3.3:49898340-49898359 | None:intergenic | 25.0% |
| !! | CCAACAAGTTTAAAATACAA+TGG | - | chr3.3:49898560-49898579 | None:intergenic | 25.0% |
| !! | GTCTTTTATCTCTTGTATTA+TGG | + | chr3.3:49896046-49896065 | MS.gene08108:intron | 25.0% |
| !! | TATTTGTCTTTTGTGTTACA+TGG | + | chr3.3:49898401-49898420 | MS.gene08108:intron | 25.0% |
| !!! | ATTGGCTCTTTAAAATTGTT+GGG | + | chr3.3:49897644-49897663 | MS.gene08108:intron | 25.0% |
| !!! | ATTTTTTCACTTTGTCATTC+TGG | - | chr3.3:49897400-49897419 | None:intergenic | 25.0% |
| !!! | CCATTGTATTTTAAACTTGT+TGG | + | chr3.3:49898557-49898576 | MS.gene08108:intron | 25.0% |
| !!! | CTTTTTAAAATAAGCCGATT+AGG | - | chr3.3:49896611-49896630 | None:intergenic | 25.0% |
| !!! | GTATGTTTTTTCTCTTGTAT+TGG | + | chr3.3:49897626-49897645 | MS.gene08108:intron | 25.0% |
| !!! | TATTGGCTCTTTAAAATTGT+TGG | + | chr3.3:49897643-49897662 | MS.gene08108:intron | 25.0% |
| !!! | TCTTTTTTTCTATCCAGTTA+CGG | - | chr3.3:49897472-49897491 | None:intergenic | 25.0% |
| !!! | TTTTTTTGGGATTGAACATT+GGG | - | chr3.3:49896498-49896517 | None:intergenic | 25.0% |
| AAAAAGTTGAGCAATTTGAG+TGG | + | chr3.3:49897762-49897781 | MS.gene08108:intron | 30.0% | |
| AAAGACAACAGATAAGAAAG+AGG | - | chr3.3:49896032-49896051 | None:intergenic | 30.0% | |
| AAATGGTGCGGTTATATAAT+TGG | + | chr3.3:49896423-49896442 | MS.gene08108:intron | 30.0% | |
| AAGATCATCATCCAAAATAG+AGG | - | chr3.3:49898288-49898307 | None:intergenic | 30.0% | |
| ACAAAACAGCAGTAAAAGAA+AGG | - | chr3.3:49896843-49896862 | None:intergenic | 30.0% | |
| ACTTCCTGCTTCAATTATAA+TGG | + | chr3.3:49898684-49898703 | MS.gene08108:CDS | 30.0% | |
| ATAGCTTGATTAAAAGACAC+GGG | - | chr3.3:49895882-49895901 | None:intergenic | 30.0% | |
| ATAGGACATTAAAAAGGACA+AGG | - | chr3.3:49897887-49897906 | None:intergenic | 30.0% | |
| GAAAGAGAAAATTGACACAT+TGG | + | chr3.3:49897808-49897827 | MS.gene08108:intron | 30.0% | |
| GGTTGTTAGAGTATGAAATT+TGG | + | chr3.3:49897549-49897568 | MS.gene08108:CDS | 30.0% | |
| GTGCTTTGTGACTAAAAAAT+TGG | - | chr3.3:49898812-49898831 | None:intergenic | 30.0% | |
| TAGAGAATATTACAAACAGC+TGG | - | chr3.3:49897692-49897711 | None:intergenic | 30.0% | |
| TAGGACATTAAAAAGGACAA+GGG | - | chr3.3:49897886-49897905 | None:intergenic | 30.0% | |
| TATAATTGGTGTGGTTAAGT+TGG | + | chr3.3:49896437-49896456 | MS.gene08108:intron | 30.0% | |
| TATGAACCTTCTTATGTACA+TGG | + | chr3.3:49898639-49898658 | MS.gene08108:CDS | 30.0% | |
| TTATAATTGAAGCAGGAAGT+AGG | - | chr3.3:49898684-49898703 | None:intergenic | 30.0% | |
| TTATCTTATGACCCTTAAGA+GGG | + | chr3.3:49895938-49895957 | MS.gene08108:intron | 30.0% | |
| TTGAAAAAATGATCCGTAAC+TGG | + | chr3.3:49897456-49897475 | MS.gene08108:CDS | 30.0% | |
| TTTGTGAAGATATCATCACT+CGG | + | chr3.3:49895804-49895823 | MS.gene08108:CDS | 30.0% | |
| ! | GAACCAAGTTTTCATCTATT+TGG | + | chr3.3:49898433-49898452 | MS.gene08108:CDS | 30.0% |
| ! | GTGTCTTTTAATCAAGCTAT+TGG | + | chr3.3:49895882-49895901 | MS.gene08108:intron | 30.0% |
| ! | TGATAAATCCGAGAGATTTT+TGG | - | chr3.3:49896566-49896585 | None:intergenic | 30.0% |
| ! | TTTTGTGTTACATGGATGAA+GGG | + | chr3.3:49898409-49898428 | MS.gene08108:intron | 30.0% |
| !! | AAGCTTTATTGTCCTTTATG+AGG | + | chr3.3:49897328-49897347 | MS.gene08108:CDS | 30.0% |
| !! | AGTTTAAGTGATTTGGGTTT+TGG | + | chr3.3:49896130-49896149 | MS.gene08108:intron | 30.0% |
| !! | ATATTTTGTTTGTCTGTGGT+TGG | + | chr3.3:49895831-49895850 | MS.gene08108:CDS | 30.0% |
| !! | GCTTATATTTTGTTTGTCTG+TGG | + | chr3.3:49895827-49895846 | MS.gene08108:CDS | 30.0% |
| !!! | GTTTTTTTGGGATTGAACAT+TGG | - | chr3.3:49896499-49896518 | None:intergenic | 30.0% |
| !!! | TTTTTTGGGATTGAACATTG+GGG | - | chr3.3:49896497-49896516 | None:intergenic | 30.0% |
| AAACTTTGCAGACAAGTATG+AGG | - | chr3.3:49897582-49897601 | None:intergenic | 35.0% | |
| AACCACCACTTAGATGAATA+AGG | - | chr3.3:49896743-49896762 | None:intergenic | 35.0% | |
| ACCTGTATTCATCCTCATAA+AGG | - | chr3.3:49897343-49897362 | None:intergenic | 35.0% | |
| AGGACATTAAAAAGGACAAG+GGG | - | chr3.3:49897885-49897904 | None:intergenic | 35.0% | |
| ATACTTGTCTGCAAAGTTTC+TGG | + | chr3.3:49897583-49897602 | MS.gene08108:CDS | 35.0% | |
| ATCATAACACCAGTAACAAC+AGG | - | chr3.3:49895993-49896012 | None:intergenic | 35.0% | |
| ATCATGTGAGTTTACTTTGC+TGG | + | chr3.3:49897297-49897316 | MS.gene08108:CDS | 35.0% | |
| ATTGCAAACAGTGAGATCAA+GGG | + | chr3.3:49895776-49895795 | MS.gene08108:CDS | 35.0% | |
| CATCCACAATAATAAGGACA+TGG | - | chr3.3:49898334-49898353 | None:intergenic | 35.0% | |
| CATTGCAATATCATGGATGA+AGG | + | chr3.3:49895746-49895765 | MS.gene08108:CDS | 35.0% | |
| CCATCTTCTATATCTGACAA+AGG | - | chr3.3:49897513-49897532 | None:intergenic | 35.0% | |
| CCTTTGTCAGATATAGAAGA+TGG | + | chr3.3:49897510-49897529 | MS.gene08108:CDS | 35.0% | |
| CTGGATAGAAAAAAAGACTC+TGG | + | chr3.3:49897475-49897494 | MS.gene08108:CDS | 35.0% | |
| CTTATCTTATGACCCTTAAG+AGG | + | chr3.3:49895937-49895956 | MS.gene08108:intron | 35.0% | |
| CTTCGTATGTAACTCCTAAT+CGG | + | chr3.3:49896594-49896613 | MS.gene08108:intron | 35.0% | |
| GAGAAGATTCAACTATTGTG+TGG | + | chr3.3:49898743-49898762 | MS.gene08108:CDS | 35.0% | |
| GAGTCTTACTATCTTCTGAA+GGG | + | chr3.3:49898512-49898531 | MS.gene08108:CDS | 35.0% | |
| GGATATTCTCTTACAGTCAT+TGG | + | chr3.3:49899113-49899132 | MS.gene08108:CDS | 35.0% | |
| GGCTAATCTATATGTACTTC+TGG | - | chr3.3:49896199-49896218 | None:intergenic | 35.0% | |
| GGTTTCCTTATTCATCTAAG+TGG | + | chr3.3:49896735-49896754 | MS.gene08108:intron | 35.0% | |
| GTCATTGGAGTTATCCTATA+TGG | + | chr3.3:49899128-49899147 | MS.gene08108:CDS | 35.0% | |
| GTTTGAGCTATTAATGGAGA+AGG | + | chr3.3:49896908-49896927 | MS.gene08108:CDS | 35.0% | |
| TACTTGTCTGCAAAGTTTCT+GGG | + | chr3.3:49897584-49897603 | MS.gene08108:CDS | 35.0% | |
| TCCTCCATTATAATTGAAGC+AGG | - | chr3.3:49898691-49898710 | None:intergenic | 35.0% | |
| TCCTGCTTCAATTATAATGG+AGG | + | chr3.3:49898687-49898706 | MS.gene08108:CDS | 35.0% | |
| TCCTTTATGAGGATGAATAC+AGG | + | chr3.3:49897339-49897358 | MS.gene08108:CDS | 35.0% | |
| TGCAATTAACCAAGGTTTGT+TGG | - | chr3.3:49896228-49896247 | None:intergenic | 35.0% | |
| TGTCCATGTCCTTATTATTG+TGG | + | chr3.3:49898328-49898347 | MS.gene08108:intron | 35.0% | |
| TTCCTTATTCATCTAAGTGG+TGG | + | chr3.3:49896738-49896757 | MS.gene08108:intron | 35.0% | |
| TTGGAGGGAATATTTCTCTA+AGG | + | chr3.3:49895850-49895869 | MS.gene08108:CDS | 35.0% | |
| TTGTGAAGATATCATCACTC+GGG | + | chr3.3:49895805-49895824 | MS.gene08108:CDS | 35.0% | |
| TTTATAACGCTAGCAAACCT+TGG | - | chr3.3:49896405-49896424 | None:intergenic | 35.0% | |
| ! | ACAGCTGGTGTTAATATTGA+AGG | - | chr3.3:49897677-49897696 | None:intergenic | 35.0% |
| ! | AGCTGGTGTTAATATTGAAG+GGG | - | chr3.3:49897675-49897694 | None:intergenic | 35.0% |
| ! | ATCTTCTCTAGCAAGTTGAA+TGG | - | chr3.3:49898731-49898750 | None:intergenic | 35.0% |
| ! | CAGCTGGTGTTAATATTGAA+GGG | - | chr3.3:49897676-49897695 | None:intergenic | 35.0% |
| ! | CTTTTGTGTTACATGGATGA+AGG | + | chr3.3:49898408-49898427 | MS.gene08108:intron | 35.0% |
| ! | GCAATTAACCAAGGTTTGTT+GGG | - | chr3.3:49896227-49896246 | None:intergenic | 35.0% |
| ! | GGTAGAAATGTCCTCTATTT+TGG | + | chr3.3:49898274-49898293 | MS.gene08108:intron | 35.0% |
| !! | ACTGTTCATTTTTGTTGCTG+AGG | - | chr3.3:49898048-49898067 | None:intergenic | 35.0% |
| !! | CTGTTCATTTTTGTTGCTGA+GGG | - | chr3.3:49898047-49898066 | None:intergenic | 35.0% |
| !! | GGTTTGCTAGCGTTATAAAA+TGG | + | chr3.3:49896406-49896425 | MS.gene08108:intron | 35.0% |
| !!! | TCTTTTACTGCTGTTTTGTG+TGG | + | chr3.3:49896844-49896863 | MS.gene08108:intron | 35.0% |
| AAACCTCCATGGGTGAATTT+CGG | + | chr3.3:49897146-49897165 | MS.gene08108:CDS | 40.0% | |
| AAACTCAGTTTCTTGCAAGG+TGG | - | chr3.3:49897084-49897103 | None:intergenic | 40.0% | |
| AACATTCCAGTCACTGATAC+TGG | - | chr3.3:49899092-49899111 | None:intergenic | 40.0% | |
| ACACATGTTGAATTTGCAGG+TGG | + | chr3.3:49896462-49896481 | MS.gene08108:intron | 40.0% | |
| ACCAAACTCAGTTTCTTGCA+AGG | - | chr3.3:49897087-49897106 | None:intergenic | 40.0% | |
| ACCATTCACAAAAGTAGCAC+AGG | - | chr3.3:49898257-49898276 | None:intergenic | 40.0% | |
| ACCTTGCAAGAAACTGAGTT+TGG | + | chr3.3:49897083-49897102 | MS.gene08108:CDS | 40.0% | |
| ACTTATCTTCAACTCCACAC+TGG | + | chr3.3:49898768-49898787 | MS.gene08108:CDS | 40.0% | |
| AGAAATCCAGTATCAGTGAC+TGG | + | chr3.3:49899083-49899102 | MS.gene08108:CDS | 40.0% | |
| AGCAAAAACCGCCGTAAAAA+AGG | - | chr3.3:49895919-49895938 | None:intergenic | 40.0% | |
| ATCACAAGGACAGATCTTGA+AGG | - | chr3.3:49896969-49896988 | None:intergenic | 40.0% | |
| ATCTATATGTACTTCTGGCG+AGG | - | chr3.3:49896194-49896213 | None:intergenic | 40.0% | |
| ATCTCGTTTACTTCGCTTCT+TGG | - | chr3.3:49899159-49899178 | None:intergenic | 40.0% | |
| ATTTCGACTACACTTGGTCT+CGG | - | chr3.3:49897423-49897442 | None:intergenic | 40.0% | |
| CACATGTTGAATTTGCAGGT+GGG | + | chr3.3:49896463-49896482 | MS.gene08108:intron | 40.0% | |
| CATTGCAAACAGTGAGATCA+AGG | + | chr3.3:49895775-49895794 | MS.gene08108:CDS | 40.0% | |
| CTCAAGCTGTCATGAACATA+CGG | + | chr3.3:49897030-49897049 | MS.gene08108:CDS | 40.0% | |
| CTTGATCTCACTGTTTGCAA+TGG | - | chr3.3:49895777-49895796 | None:intergenic | 40.0% | |
| GAATGCATGATGACTTTGTC+AGG | + | chr3.3:49899007-49899026 | MS.gene08108:intron | 40.0% | |
| GACACTACAAATCTAGCAGT+AGG | - | chr3.3:49898312-49898331 | None:intergenic | 40.0% | |
| GCAAAAACCGCCGTAAAAAA+GGG | - | chr3.3:49895918-49895937 | None:intergenic | 40.0% | |
| GCAACACATGTTGAATTTGC+AGG | + | chr3.3:49896459-49896478 | MS.gene08108:intron | 40.0% | |
| GCACTCAAAACAGTACTTCA+AGG | + | chr3.3:49898490-49898509 | MS.gene08108:CDS | 40.0% | |
| GCTAGCGTTATAAAATGGTG+CGG | + | chr3.3:49896411-49896430 | MS.gene08108:intron | 40.0% | |
| GGAGTCTTACTATCTTCTGA+AGG | + | chr3.3:49898511-49898530 | MS.gene08108:CDS | 40.0% | |
| GTATCAGTGACTGGAATGTT+AGG | + | chr3.3:49899092-49899111 | MS.gene08108:CDS | 40.0% | |
| GTATGTTCATGACAGCTTGA+GGG | - | chr3.3:49897031-49897050 | None:intergenic | 40.0% | |
| GTGCGGTTATATAATTGGTG+TGG | + | chr3.3:49896428-49896447 | MS.gene08108:intron | 40.0% | |
| GTTGACAAAATATGCCAGTG+TGG | - | chr3.3:49898785-49898804 | None:intergenic | 40.0% | |
| TAGAAGATGGAAGCTGTTGA+TGG | + | chr3.3:49897523-49897542 | MS.gene08108:CDS | 40.0% | |
| TATGTTCATGACAGCTTGAG+GGG | - | chr3.3:49897030-49897049 | None:intergenic | 40.0% | |
| TGCAATATCATGGATGAAGG+TGG | + | chr3.3:49895749-49895768 | MS.gene08108:CDS | 40.0% | |
| TTTCTCCATTTGTGTGTTGG+TGG | + | chr3.3:49897199-49897218 | MS.gene08108:CDS | 40.0% | |
| TTTGTTTGTCTGTGGTTGGA+GGG | + | chr3.3:49895835-49895854 | MS.gene08108:CDS | 40.0% | |
| ! | ATAATGGAGGAAGATGTGCT+TGG | + | chr3.3:49898700-49898719 | MS.gene08108:CDS | 40.0% |
| ! | CTGTTTCTCCATTTGTGTGT+TGG | + | chr3.3:49897196-49897215 | MS.gene08108:CDS | 40.0% |
| ! | TTAAGAGTTGCGTGTTTTCC+TGG | - | chr3.3:49896328-49896347 | None:intergenic | 40.0% |
| !! | ACTGGTGTTATGATTGCTAG+TGG | + | chr3.3:49895999-49896018 | MS.gene08108:intron | 40.0% |
| !! | CTGGTGTTATGATTGCTAGT+GGG | + | chr3.3:49896000-49896019 | MS.gene08108:intron | 40.0% |
| !! | TCATGAACATACGGATTGGA+TGG | + | chr3.3:49897039-49897058 | MS.gene08108:CDS | 40.0% |
| !! | TGGTGTTATGATTGCTAGTG+GGG | + | chr3.3:49896001-49896020 | MS.gene08108:intron | 40.0% |
| !! | TTAACCAAGGTTTGTTGGGT+TGG | - | chr3.3:49896223-49896242 | None:intergenic | 40.0% |
| !! | TTTTGTTTGTCTGTGGTTGG+AGG | + | chr3.3:49895834-49895853 | MS.gene08108:CDS | 40.0% |
| !!! | TGGGTTTTGGACATTCGTTA+GGG | + | chr3.3:49896143-49896162 | MS.gene08108:intron | 40.0% |
| !!! | TTGGGTTTTGGACATTCGTT+AGG | + | chr3.3:49896142-49896161 | MS.gene08108:intron | 40.0% |
| AACCACCACCAACACACAAA+TGG | - | chr3.3:49897207-49897226 | None:intergenic | 45.0% | |
| ACGCTCATTTCGACTACACT+TGG | - | chr3.3:49897429-49897448 | None:intergenic | 45.0% | |
| AGCACCAAGCTTGAAACTCA+CGG | - | chr3.3:49896934-49896953 | None:intergenic | 45.0% | |
| AGGAAATGCAAAAGGAGCTG+TGG | + | chr3.3:49899034-49899053 | MS.gene08108:CDS | 45.0% | |
| ATCGAAAACCAGGAGATGCT+GGG | - | chr3.3:49896809-49896828 | None:intergenic | 45.0% | |
| ATGTTCATGACAGCTTGAGG+GGG | - | chr3.3:49897029-49897048 | None:intergenic | 45.0% | |
| CACTAGTGCGTTAACACTTC+AGG | + | chr3.3:49898831-49898850 | MS.gene08108:CDS | 45.0% | |
| CAGGTCCTAGGAAATGCAAA+AGG | + | chr3.3:49899026-49899045 | MS.gene08108:intron | 45.0% | |
| CCTTGTGATCTACTCTACCT+CGG | + | chr3.3:49896980-49896999 | MS.gene08108:CDS | 45.0% | |
| CGTATGTTCATGACAGCTTG+AGG | - | chr3.3:49897032-49897051 | None:intergenic | 45.0% | |
| CTTATGACCCTTAAGAGGGA+GGG | + | chr3.3:49895942-49895961 | MS.gene08108:intron | 45.0% | |
| GCTCTTGTTCCTGTTGTTAC+TGG | + | chr3.3:49895981-49896000 | MS.gene08108:intron | 45.0% | |
| GCTGTCATGAACATACGGAT+TGG | + | chr3.3:49897035-49897054 | MS.gene08108:CDS | 45.0% | |
| GCTTCTTGGCTTCACCATAT+AGG | - | chr3.3:49899145-49899164 | None:intergenic | 45.0% | |
| TAGTCGAAATGAGCGTGATG+TGG | + | chr3.3:49897433-49897452 | MS.gene08108:CDS | 45.0% | |
| TATCGAAAACCAGGAGATGC+TGG | - | chr3.3:49896810-49896829 | None:intergenic | 45.0% | |
| TCCATGGGTGAATTTCGGTT+GGG | + | chr3.3:49897151-49897170 | MS.gene08108:CDS | 45.0% | |
| TCTTATGACCCTTAAGAGGG+AGG | + | chr3.3:49895941-49895960 | MS.gene08108:intron | 45.0% | |
| TCTTATGTACATGGCACCAG+TGG | + | chr3.3:49898648-49898667 | MS.gene08108:CDS | 45.0% | |
| TGATGACTTTGTCAGGTCCT+AGG | + | chr3.3:49899014-49899033 | MS.gene08108:intron | 45.0% | |
| TGTGGATCTAGATCCAGATC+TGG | + | chr3.3:49896862-49896881 | MS.gene08108:intron | 45.0% | |
| TGTTGAATTTGCAGGTGGGA+CGG | + | chr3.3:49896467-49896486 | MS.gene08108:intron | 45.0% | |
| TTGGACATTCGTTAGGGTCA+TGG | + | chr3.3:49896149-49896168 | MS.gene08108:intron | 45.0% | |
| ! | CAGCTCCTTTTGCATTTCCT+AGG | - | chr3.3:49899034-49899053 | None:intergenic | 45.0% |
| ! | GATGGAAGCTGTTGATGGAT+TGG | + | chr3.3:49897528-49897547 | MS.gene08108:CDS | 45.0% |
| ! | TGAGTTTGGTTTCTCTTCCC+TGG | + | chr3.3:49897097-49897116 | MS.gene08108:CDS | 45.0% |
| !! | AAGTACTGTTTTGAGTGCCC+TGG | - | chr3.3:49898488-49898507 | None:intergenic | 45.0% |
| !! | CTGGTGCCATGTACATAAGA+AGG | - | chr3.3:49898648-49898667 | None:intergenic | 45.0% |
| !! | GAATTTCGGTTGGGTTGGTT+TGG | + | chr3.3:49897160-49897179 | MS.gene08108:CDS | 45.0% |
| !! | GGAGGGTTGGCTTACTTATA+TGG | + | chr3.3:49895959-49895978 | MS.gene08108:intron | 45.0% |
| !!! | GCCTGTGCTACTTTTGTGAA+TGG | + | chr3.3:49898253-49898272 | MS.gene08108:intron | 45.0% |
| !!! | TGCTACGACGCCCTTTTTTA+CGG | + | chr3.3:49895905-49895924 | MS.gene08108:intron | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTTGA+CGG | - | chr3.3:49897742-49897761 | None:intergenic | 5.0% |
| AAGCCAACCCTCCCTCTTAA+GGG | - | chr3.3:49895952-49895971 | None:intergenic | 50.0% | |
| AAGGCCGTGAGTTTCAAGCT+TGG | + | chr3.3:49896927-49896946 | MS.gene08108:CDS | 50.0% | |
| ACCCAACCGAAATTCACCCA+TGG | - | chr3.3:49897155-49897174 | None:intergenic | 50.0% | |
| AGGGTCATGGTAGACCTCAA+CGG | + | chr3.3:49896162-49896181 | MS.gene08108:intron | 50.0% | |
| AGTAGGAATGCAACAGCCAC+TGG | - | chr3.3:49898667-49898686 | None:intergenic | 50.0% | |
| AGTTTCTTGCAAGGTGGAGG+AGG | - | chr3.3:49897078-49897097 | None:intergenic | 50.0% | |
| ATCTGGCTGTCGATGGAGAT+TGG | + | chr3.3:49896879-49896898 | MS.gene08108:CDS | 50.0% | |
| CAACCGAAATTCACCCATGG+AGG | - | chr3.3:49897152-49897171 | None:intergenic | 50.0% | |
| CCGAGGTAGAGTAGATCACA+AGG | - | chr3.3:49896983-49897002 | None:intergenic | 50.0% | |
| CTCAGTTTCTTGCAAGGTGG+AGG | - | chr3.3:49897081-49897100 | None:intergenic | 50.0% | |
| CTCCATGGGTGAATTTCGGT+TGG | + | chr3.3:49897150-49897169 | MS.gene08108:CDS | 50.0% | |
| CTCGGCGGAAACTAATACAG+AGG | - | chr3.3:49896648-49896667 | None:intergenic | 50.0% | |
| GTTGAATTTGCAGGTGGGAC+GGG | + | chr3.3:49896468-49896487 | MS.gene08108:intron | 50.0% | |
| GTTTCTTGCAAGGTGGAGGA+GGG | - | chr3.3:49897077-49897096 | None:intergenic | 50.0% | |
| TAAGCCAACCCTCCCTCTTA+AGG | - | chr3.3:49895953-49895972 | None:intergenic | 50.0% | |
| TCTAGAAAGTCCCTGAGCCT+CGG | - | chr3.3:49896666-49896685 | None:intergenic | 50.0% | |
| TCTGGCTGTCGATGGAGATT+GGG | + | chr3.3:49896880-49896899 | MS.gene08108:CDS | 50.0% | |
| TGGGTGAATTTCGGTTGGGT+TGG | + | chr3.3:49897155-49897174 | MS.gene08108:CDS | 50.0% | |
| TGTGATCTACTCTACCTCGG+CGG | + | chr3.3:49896983-49897002 | MS.gene08108:CDS | 50.0% | |
| TTGAATTTGCAGGTGGGACG+GGG | + | chr3.3:49896469-49896488 | MS.gene08108:intron | 50.0% | |
| ! | CTCCATTTGTGTGTTGGTGG+TGG | + | chr3.3:49897202-49897221 | MS.gene08108:CDS | 50.0% |
| ! | CTCTGTATTAGTTTCCGCCG+AGG | + | chr3.3:49896646-49896665 | MS.gene08108:intron | 50.0% |
| !! | ACCAAGGTTTGTTGGGTTGG+TGG | - | chr3.3:49896220-49896239 | None:intergenic | 50.0% |
| !!! | TACGACGCCCTTTTTTACGG+CGG | + | chr3.3:49895908-49895927 | MS.gene08108:intron | 50.0% |
| AGATGCTGGGATAGACCAGG+AGG | - | chr3.3:49896796-49896815 | None:intergenic | 55.0% | |
| AGGAGATGCTGGGATAGACC+AGG | - | chr3.3:49896799-49896818 | None:intergenic | 55.0% | |
| AGGTTTCCGTGGAGGCCTTT+CGG | - | chr3.3:49897132-49897151 | None:intergenic | 55.0% | |
| CATCAGTGCTACAGCAGCCA+GGG | + | chr3.3:49898468-49898487 | MS.gene08108:CDS | 55.0% | |
| GAAACCCCTAGACAGAGCTC+GGG | - | chr3.3:49896721-49896740 | None:intergenic | 55.0% | |
| GATCCAGATCTGGCTGTCGA+TGG | + | chr3.3:49896872-49896891 | MS.gene08108:intron | 55.0% | |
| GCCACCAACCCAACAAACCT+TGG | + | chr3.3:49896216-49896235 | MS.gene08108:intron | 55.0% | |
| GGAAACCCCTAGACAGAGCT+CGG | - | chr3.3:49896722-49896741 | None:intergenic | 55.0% | |
| GGTTTCTCTTCCCTGGAGCT+CGG | + | chr3.3:49897104-49897123 | MS.gene08108:CDS | 55.0% | |
| TCTCCATCGACAGCCAGATC+TGG | - | chr3.3:49896878-49896897 | None:intergenic | 55.0% | |
| TGACCCTTAAGAGGGAGGGT+TGG | + | chr3.3:49895946-49895965 | MS.gene08108:intron | 55.0% | |
| TGGTCTATCCCAGCATCTCC+TGG | + | chr3.3:49896798-49896817 | MS.gene08108:intron | 55.0% | |
| TTAGTTTCCGCCGAGGCTCA+GGG | + | chr3.3:49896653-49896672 | MS.gene08108:intron | 55.0% | |
| TTCACCCATGGAGGTTTCCG+TGG | - | chr3.3:49897143-49897162 | None:intergenic | 55.0% | |
| TTCATGACAGCTTGAGGGGG+TGG | - | chr3.3:49897026-49897045 | None:intergenic | 55.0% | |
| ! | ATTAGTTTCCGCCGAGGCTC+AGG | + | chr3.3:49896652-49896671 | MS.gene08108:intron | 55.0% |
| ! | TGGGATAGACCAGGAGGTAC+TGG | - | chr3.3:49896790-49896809 | None:intergenic | 55.0% |
| !! | GGATAGACCAGGAGGTACTG+GGG | - | chr3.3:49896788-49896807 | None:intergenic | 55.0% |
| !! | GGGATAGACCAGGAGGTACT+GGG | - | chr3.3:49896789-49896808 | None:intergenic | 55.0% |
| ACAGCTTGAGGGGGTGGTTC+CGG | - | chr3.3:49897020-49897039 | None:intergenic | 60.0% | |
| ACCCATGGAGGTTTCCGTGG+AGG | - | chr3.3:49897140-49897159 | None:intergenic | 60.0% | |
| AGAAAGTCCCTGAGCCTCGG+CGG | - | chr3.3:49896663-49896682 | None:intergenic | 60.0% | |
| CTCCACCCGAGCTCTGTCTA+GGG | + | chr3.3:49896713-49896732 | MS.gene08108:intron | 60.0% | |
| GCATCAGTGCTACAGCAGCC+AGG | + | chr3.3:49898467-49898486 | MS.gene08108:CDS | 60.0% | |
| GCCTCCACGGAAACCTCCAT+GGG | + | chr3.3:49897136-49897155 | MS.gene08108:CDS | 60.0% | |
| TCCACCCGAGCTCTGTCTAG+GGG | + | chr3.3:49896714-49896733 | MS.gene08108:intron | 60.0% | |
| TCTACTCTACCTCGGCGGAG+CGG | + | chr3.3:49896988-49897007 | MS.gene08108:CDS | 60.0% | |
| TCTCCACCCGAGCTCTGTCT+AGG | + | chr3.3:49896712-49896731 | MS.gene08108:intron | 60.0% | |
| TGGCTTTCCCCAGTACCTCC+TGG | + | chr3.3:49896778-49896797 | MS.gene08108:intron | 60.0% | |
| ! | TGGCGAGGCATCAACCGTTG+AGG | - | chr3.3:49896179-49896198 | None:intergenic | 60.0% |
| !! | AGGAGGTACTGGGGAAAGCC+AGG | - | chr3.3:49896779-49896798 | None:intergenic | 60.0% |
| !! | AGGTACTGGGGAAAGCCAGG+AGG | - | chr3.3:49896776-49896795 | None:intergenic | 60.0% |
| ACCCCTAGACAGAGCTCGGG+TGG | - | chr3.3:49896718-49896737 | None:intergenic | 65.0% | |
| GGCCTCCACGGAAACCTCCA+TGG | + | chr3.3:49897135-49897154 | MS.gene08108:CDS | 65.0% | |
| TGGTTGTCCCCAGCACCTCC+TGG | + | chr3.3:49896758-49896777 | MS.gene08108:intron | 65.0% | |
| ! | TCGGCACCGAAAGGCCTCCA+CGG | + | chr3.3:49897123-49897142 | MS.gene08108:CDS | 65.0% |
| ! | TGGGGAAAGCCAGGAGGTGC+TGG | - | chr3.3:49896770-49896789 | None:intergenic | 65.0% |
| !! | CCTTTCGGTGCCGAGCTCCA+GGG | - | chr3.3:49897117-49897136 | None:intergenic | 65.0% |
| !! | GGGAAAGCCAGGAGGTGCTG+GGG | - | chr3.3:49896768-49896787 | None:intergenic | 65.0% |
| !! | GGGGAAAGCCAGGAGGTGCT+GGG | - | chr3.3:49896769-49896788 | None:intergenic | 65.0% |
| GCTTGAGGGGGTGGTTCCGG+TGG | - | chr3.3:49897017-49897036 | None:intergenic | 70.0% | |
| TGAGGGGGTGGTTCCGGTGG+TGG | - | chr3.3:49897014-49897033 | None:intergenic | 70.0% | |
| ! | CCCTGGAGCTCGGCACCGAA+AGG | + | chr3.3:49897114-49897133 | MS.gene08108:CDS | 70.0% |
| !! | GCCTTTCGGTGCCGAGCTCC+AGG | - | chr3.3:49897118-49897137 | None:intergenic | 70.0% |
| ! | CTCGGCGGAGCGGCCACCAC+CGG | + | chr3.3:49896998-49897017 | MS.gene08108:CDS | 80.0% |
| !! | CGGTGGTGGCCGCTCCGCCG+AGG | - | chr3.3:49897000-49897019 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 49895713 | 49899184 | 49895713 | ID=MS.gene08108 |
| chr3.3 | mRNA | 49895713 | 49899184 | 49895713 | ID=MS.gene08108.t1;Parent=MS.gene08108 |
| chr3.3 | exon | 49895713 | 49895871 | 49895713 | ID=MS.gene08108.t1.exon1;Parent=MS.gene08108.t1 |
| chr3.3 | CDS | 49895713 | 49895871 | 49895713 | ID=cds.MS.gene08108.t1;Parent=MS.gene08108.t1 |
| chr3.3 | exon | 49896873 | 49897625 | 49896873 | ID=MS.gene08108.t1.exon2;Parent=MS.gene08108.t1 |
| chr3.3 | CDS | 49896873 | 49897625 | 49896873 | ID=cds.MS.gene08108.t1;Parent=MS.gene08108.t1 |
| chr3.3 | exon | 49898430 | 49898533 | 49898430 | ID=MS.gene08108.t1.exon3;Parent=MS.gene08108.t1 |
| chr3.3 | CDS | 49898430 | 49898533 | 49898430 | ID=cds.MS.gene08108.t1;Parent=MS.gene08108.t1 |
| chr3.3 | exon | 49898624 | 49898852 | 49898624 | ID=MS.gene08108.t1.exon4;Parent=MS.gene08108.t1 |
| chr3.3 | CDS | 49898624 | 49898852 | 49898624 | ID=cds.MS.gene08108.t1;Parent=MS.gene08108.t1 |
| chr3.3 | exon | 49899029 | 49899184 | 49899029 | ID=MS.gene08108.t1.exon5;Parent=MS.gene08108.t1 |
| chr3.3 | CDS | 49899029 | 49899184 | 49899029 | ID=cds.MS.gene08108.t1;Parent=MS.gene08108.t1 |
| Gene Sequence |
| Protein sequence |
