Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08767.t1 | XP_003629722.2 | 75.4 | 334 | 37 | 1 | 1 | 289 | 1 | 334 | 1.50E-98 | 369.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08767.t1 | Q9Y3A4 | 37.0 | 138 | 77 | 4 | 155 | 289 | 150 | 280 | 2.1e-11 | 71.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08767.t1 | G7LIM3 | 75.4 | 334 | 37 | 1 | 1 | 289 | 1 | 334 | 1.1e-98 | 369.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049166 | MS.gene08767 | 0.807008 | 6.23E-50 | -1.69E-46 |
MS.gene049756 | MS.gene08767 | 0.812037 | 5.19E-51 | -1.69E-46 |
MS.gene050069 | MS.gene08767 | 0.801745 | 7.79E-49 | -1.69E-46 |
MS.gene050114 | MS.gene08767 | 0.822568 | 2.21E-53 | -1.69E-46 |
MS.gene050317 | MS.gene08767 | 0.828633 | 8.07E-55 | -1.69E-46 |
MS.gene051757 | MS.gene08767 | 0.816289 | 5.97E-52 | -1.69E-46 |
MS.gene051790 | MS.gene08767 | 0.820436 | 6.87E-53 | -1.69E-46 |
MS.gene05188 | MS.gene08767 | 0.851459 | 8.75E-61 | -1.69E-46 |
MS.gene051975 | MS.gene08767 | 0.809892 | 1.51E-50 | -1.69E-46 |
MS.gene052434 | MS.gene08767 | 0.834493 | 2.90E-56 | -1.69E-46 |
MS.gene053058 | MS.gene08767 | 0.801704 | 7.94E-49 | -1.69E-46 |
MS.gene053381 | MS.gene08767 | 0.858775 | 6.53E-63 | -1.69E-46 |
MS.gene055603 | MS.gene08767 | 0.807036 | 6.15E-50 | -1.69E-46 |
MS.gene056403 | MS.gene08767 | 0.817132 | 3.86E-52 | -1.69E-46 |
MS.gene056605 | MS.gene08767 | 0.820219 | 7.70E-53 | -1.69E-46 |
MS.gene056986 | MS.gene08767 | 0.819514 | 1.12E-52 | -1.69E-46 |
MS.gene057094 | MS.gene08767 | 0.815156 | 1.07E-51 | -1.69E-46 |
MS.gene057360 | MS.gene08767 | 0.803608 | 3.21E-49 | -1.69E-46 |
MS.gene058084 | MS.gene08767 | 0.820792 | 5.69E-53 | -1.69E-46 |
MS.gene059249 | MS.gene08767 | 0.805616 | 1.23E-49 | -1.69E-46 |
MS.gene059360 | MS.gene08767 | 0.816437 | 5.53E-52 | -1.69E-46 |
MS.gene06010 | MS.gene08767 | 0.84229 | 2.83E-58 | -1.69E-46 |
MS.gene06011 | MS.gene08767 | 0.842 | 3.38E-58 | -1.69E-46 |
MS.gene060586 | MS.gene08767 | 0.806357 | 8.56E-50 | -1.69E-46 |
MS.gene060763 | MS.gene08767 | 0.805107 | 1.57E-49 | -1.69E-46 |
MS.gene060869 | MS.gene08767 | 0.810336 | 1.21E-50 | -1.69E-46 |
MS.gene060870 | MS.gene08767 | 0.825838 | 3.77E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08767.t1 | MTR_8g085800 | 82.335 | 334 | 14 | 1 | 1 | 289 | 1 | 334 | 0.0 | 541 |
MS.gene08767.t1 | MTR_4g051625 | 75.449 | 334 | 35 | 3 | 1 | 289 | 1 | 332 | 1.13e-171 | 478 |
MS.gene08767.t1 | MTR_4g051625 | 81.356 | 295 | 44 | 5 | 2 | 289 | 87 | 377 | 4.09e-165 | 463 |
MS.gene08767.t1 | MTR_1g090650 | 79.618 | 157 | 32 | 0 | 133 | 289 | 32 | 188 | 7.51e-88 | 260 |
MS.gene08767.t1 | MTR_8g085830 | 63.636 | 99 | 9 | 2 | 191 | 289 | 2 | 73 | 1.88e-32 | 115 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08767.t1 | AT5G38720 | 65.101 | 149 | 51 | 1 | 142 | 289 | 165 | 313 | 5.25e-69 | 216 |
MS.gene08767.t1 | AT5G38720 | 65.101 | 149 | 51 | 1 | 142 | 289 | 158 | 306 | 5.48e-69 | 216 |
MS.gene08767.t1 | AT5G38720 | 65.101 | 149 | 51 | 1 | 142 | 289 | 177 | 325 | 3.36e-68 | 215 |
Find 50 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTTTATAATCTCCATTTC+AGG | 0.169996 | 4.2:-12696932 | None:intergenic |
ATTAGAATCTCTAGGCTTCT+TGG | 0.261565 | 4.2:-12697236 | None:intergenic |
AAATCAACTTCTCCGTCTTC+TGG | 0.314037 | 4.2:-12697025 | None:intergenic |
AGCTGCTGCAGAAAATAAAT+TGG | 0.319112 | 4.2:+12699445 | MS.gene08767:CDS |
GCAATCAACATCATTTAATA+AGG | 0.321323 | 4.2:-12700214 | None:intergenic |
GTTGATTTAGAAGAGCAAAA+TGG | 0.348945 | 4.2:+12697040 | MS.gene08767:CDS |
TCCTGAAATGGAGATTATAA+AGG | 0.363253 | 4.2:+12696931 | MS.gene08767:CDS |
GACATTCATATTATTTCCTC+TGG | 0.367904 | 4.2:+12697463 | MS.gene08767:CDS |
CCAACCCTGGTCTACTTTGA+TGG | 0.384521 | 4.2:-12697956 | None:intergenic |
AAGCTACTACTAGTCGAAAA+AGG | 0.390121 | 4.2:+12696966 | MS.gene08767:CDS |
ACTTCTCCGTCTTCTGGTGT+TGG | 0.434297 | 4.2:-12697019 | None:intergenic |
GGAGATGATGACTGCTCAAA+TGG | 0.443319 | 4.2:+12697484 | MS.gene08767:CDS |
AAAAGAGAAGCTCAGAGAAA+TGG | 0.446445 | 4.2:+12699515 | MS.gene08767:CDS |
TCCTTTACTAACTTTCATCA+TGG | 0.465522 | 4.2:-12696578 | None:intergenic |
CCTGAAATGGAGATTATAAA+GGG | 0.465886 | 4.2:+12696932 | MS.gene08767:CDS |
TGTTTCAGTGGATCCTGAAA+TGG | 0.466212 | 4.2:+12696919 | MS.gene08767:intron |
TCCATCCTCCTTCTGCAGCA+AGG | 0.468377 | 4.2:-12699346 | None:intergenic |
CATGTCAAGATGAACAATAA+TGG | 0.472762 | 4.2:+12696673 | MS.gene08767:CDS |
AAGTGGGATTGCTGTGGGCT+CGG | 0.474663 | 4.2:+12699415 | MS.gene08767:CDS |
AAAGAGAGAACAGAATCATC+AGG | 0.479042 | 4.2:+12697438 | MS.gene08767:CDS |
CCATCCTCCTTCTGCAGCAA+GGG | 0.496362 | 4.2:-12699345 | None:intergenic |
GCCATGATGAAAGTTAGTAA+AGG | 0.506664 | 4.2:+12696577 | None:intergenic |
CGCTGAAAGTGGGATTGCTG+TGG | 0.507910 | 4.2:+12699409 | MS.gene08767:CDS |
ACATTGCGATTCTAAAGAAA+AGG | 0.526954 | 4.2:+12697201 | MS.gene08767:CDS |
AAAACTACTGACGCTGAAAG+TGG | 0.530432 | 4.2:+12699398 | MS.gene08767:CDS |
CCATCAAAGTAGACCAGGGT+TGG | 0.532437 | 4.2:+12697956 | MS.gene08767:CDS |
TGTTGCAAAACCTCCAACCC+TGG | 0.543861 | 4.2:-12697969 | None:intergenic |
CCCTTGCTGCAGAAGGAGGA+TGG | 0.545811 | 4.2:+12699345 | MS.gene08767:CDS |
GGAACTGCAGAGCAAATTTG+AGG | 0.547063 | 4.2:+12700144 | MS.gene08767:CDS |
TCAAACCACAGAGTGGATCA+TGG | 0.547910 | 4.2:+12697929 | MS.gene08767:intron |
TCAAAGTAGACCAGGGTTGG+AGG | 0.548210 | 4.2:+12697959 | MS.gene08767:CDS |
AAAGAAGCCCTTGCTGCAGA+AGG | 0.553866 | 4.2:+12699338 | MS.gene08767:CDS |
TGCTGCAGAAGGAGGATGGA+CGG | 0.572937 | 4.2:+12699349 | MS.gene08767:CDS |
GAAGCCCTTGCTGCAGAAGG+AGG | 0.575071 | 4.2:+12699341 | MS.gene08767:CDS |
AAACTACTGACGCTGAAAGT+GGG | 0.579773 | 4.2:+12699399 | MS.gene08767:CDS |
GCTGAAAGTGGGATTGCTGT+GGG | 0.581833 | 4.2:+12699410 | MS.gene08767:CDS |
GAATACCATCAAAGTAGACC+AGG | 0.581962 | 4.2:+12697951 | MS.gene08767:CDS |
GCTTCAATATTAGAATCTCT+AGG | 0.587785 | 4.2:-12697244 | None:intergenic |
GACGGTGGTTCAGCACCACA+AGG | 0.611340 | 4.2:+12699367 | MS.gene08767:CDS |
AATGATATCAGATGGAGTAG+TGG | 0.617694 | 4.2:+12697177 | MS.gene08767:intron |
TGGTTCAGCACCACAAGGGT+AGG | 0.619462 | 4.2:+12699372 | MS.gene08767:CDS |
TTGCGATTCTAAAGAAAAGG+AGG | 0.620382 | 4.2:+12697204 | MS.gene08767:CDS |
GGAAGACCAACACCAGAAGA+CGG | 0.621600 | 4.2:+12697013 | MS.gene08767:CDS |
TGCAACAGTTGAGAGCTGCT+AGG | 0.650823 | 4.2:+12700182 | MS.gene08767:CDS |
TGAGCAGTCATCATCTCCAG+AGG | 0.681253 | 4.2:-12697479 | None:intergenic |
ACTGCAGAGCAAATTTGAGG+AGG | 0.684181 | 4.2:+12700147 | MS.gene08767:CDS |
AGAGTTTATATCTACTTACG+AGG | 0.689415 | 4.2:+12698001 | MS.gene08767:CDS |
TGCAGAAGGAGGATGGACGG+TGG | 0.709610 | 4.2:+12699352 | MS.gene08767:CDS |
AATACCATCAAAGTAGACCA+GGG | 0.721380 | 4.2:+12697952 | MS.gene08767:CDS |
ACGGTGGTTCAGCACCACAA+GGG | 0.735362 | 4.2:+12699368 | MS.gene08767:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCAATTTATAATAAAATTCA+TGG | - | chr4.2:12698182-12698201 | None:intergenic | 10.0% |
!! | TTAATATTTATTGTTATACA+TGG | + | chr4.2:12697844-12697863 | MS.gene08767:intron | 10.0% |
!!! | TTTTAGTTTAAGAAATATTA+GGG | + | chr4.2:12699766-12699785 | MS.gene08767:intron | 10.0% |
!! | ATAATTCAGTTTGTATTTAT+AGG | + | chr4.2:12698476-12698495 | MS.gene08767:intron | 15.0% |
!! | ATTAAATATACAATAGCATA+TGG | - | chr4.2:12697829-12697848 | None:intergenic | 15.0% |
!! | TAATTCAGTTTGTATTTATA+GGG | + | chr4.2:12698477-12698496 | MS.gene08767:intron | 15.0% |
!! | TTAAATATACAATAGCATAT+GGG | - | chr4.2:12697828-12697847 | None:intergenic | 15.0% |
!!! | AATGATTTTTTTTGTAATGT+CGG | + | chr4.2:12697587-12697606 | MS.gene08767:intron | 15.0% |
!!! | CTTTTAGTTTAAGAAATATT+AGG | + | chr4.2:12699765-12699784 | MS.gene08767:intron | 15.0% |
!! | AAAGTTAGTAAAGGAAAAAA+AGG | + | chr4.2:12696586-12696605 | MS.gene08767:CDS | 20.0% |
!! | CAAGTTATTATAGTTGTATA+AGG | + | chr4.2:12698335-12698354 | MS.gene08767:intron | 20.0% |
!! | CTTATACAACTATAATAACT+TGG | - | chr4.2:12698337-12698356 | None:intergenic | 20.0% |
!! | TCATAACTGAATATTGAATA+AGG | - | chr4.2:12699247-12699266 | None:intergenic | 20.0% |
!! | TTAAGAAATATTAGGGTTAT+TGG | + | chr4.2:12699773-12699792 | MS.gene08767:intron | 20.0% |
!! | TTCAATCAACTGAAATAAAT+TGG | + | chr4.2:12696895-12696914 | MS.gene08767:intron | 20.0% |
!!! | AAAAGTTATTTTCCTTCATA+AGG | + | chr4.2:12698284-12698303 | MS.gene08767:intron | 20.0% |
!!! | AAAGTTATTTTCCTTCATAA+GGG | + | chr4.2:12698285-12698304 | MS.gene08767:intron | 20.0% |
!!! | AAATGTGTTATGTTTTTGTA+CGG | + | chr4.2:12696855-12696874 | MS.gene08767:intron | 20.0% |
!!! | AAATTATATGATTTTATGCG+AGG | + | chr4.2:12699985-12700004 | MS.gene08767:intron | 20.0% |
!!! | AACAGTTTTGGTTTAAATAA+TGG | + | chr4.2:12699658-12699677 | MS.gene08767:intron | 20.0% |
!!! | AATAATGGAAGATGTTAATT+AGG | + | chr4.2:12699673-12699692 | MS.gene08767:intron | 20.0% |
!!! | ATAATGGAAGATGTTAATTA+GGG | + | chr4.2:12699674-12699693 | MS.gene08767:intron | 20.0% |
!!! | CTTTTACATGTTATTTTTCA+AGG | - | chr4.2:12698269-12698288 | None:intergenic | 20.0% |
!!! | GTATTTTATGAGTAAGAATA+GGG | + | chr4.2:12698741-12698760 | MS.gene08767:intron | 20.0% |
!!! | TAAATTTAAACGAACAGTTT+TGG | + | chr4.2:12699646-12699665 | MS.gene08767:intron | 20.0% |
!!! | TTGTATAATTACTAGTTCTA+TGG | + | chr4.2:12698243-12698262 | MS.gene08767:intron | 20.0% |
!!! | TTTTTGATCTTGATGTTTTT+TGG | + | chr4.2:12698620-12698639 | MS.gene08767:intron | 20.0% |
! | AAAAATGAATGTATGACTTC+AGG | - | chr4.2:12697337-12697356 | None:intergenic | 25.0% |
! | AGAATAATGCAAAATCATGA+AGG | + | chr4.2:12698785-12698804 | MS.gene08767:intron | 25.0% |
! | AGCTAAGAAAAAAAGAAGAA+AGG | + | chr4.2:12697396-12697415 | MS.gene08767:CDS | 25.0% |
! | ATCATAGAAACCAAGATATT+AGG | - | chr4.2:12699859-12699878 | None:intergenic | 25.0% |
! | CTAAATAATGTATCACAGAT+TGG | - | chr4.2:12698973-12698992 | None:intergenic | 25.0% |
! | GAGAGTAATTGATAGAAATA+TGG | + | chr4.2:12698719-12698738 | MS.gene08767:intron | 25.0% |
! | TAAGAAAAAAAGAAGAAAGG+AGG | + | chr4.2:12697399-12697418 | MS.gene08767:CDS | 25.0% |
! | TAATGGAAGATGTTAATTAG+GGG | + | chr4.2:12699675-12699694 | MS.gene08767:intron | 25.0% |
! | TCATAGAAACCAAGATATTA+GGG | - | chr4.2:12699858-12699877 | None:intergenic | 25.0% |
! | TCATCTACGATATGAATATA+TGG | - | chr4.2:12699567-12699586 | None:intergenic | 25.0% |
! | TGGATACTGAATATTGAATA+TGG | - | chr4.2:12699109-12699128 | None:intergenic | 25.0% |
! | TTGAGATGAGAGATTATAAA+GGG | - | chr4.2:12699169-12699188 | None:intergenic | 25.0% |
!! | AAATAAATTGGTTGTTTCAG+TGG | + | chr4.2:12696739-12696758 | MS.gene08767:intron | 25.0% |
!! | AAATACAAGGAGAACATTTT+GGG | - | chr4.2:12698924-12698943 | None:intergenic | 25.0% |
!! | ACTAATCATGTTCATGATTT+TGG | + | chr4.2:12697109-12697128 | MS.gene08767:intron | 25.0% |
!! | ATTAATAAGCCGTTTAGTTT+GGG | - | chr4.2:12699194-12699213 | None:intergenic | 25.0% |
!! | GGTATTTTATGAGTAAGAAT+AGG | + | chr4.2:12698740-12698759 | MS.gene08767:intron | 25.0% |
!! | TAATGTTTTCAGCAAATACA+AGG | - | chr4.2:12698937-12698956 | None:intergenic | 25.0% |
!! | TTTGAGATGAGAGATTATAA+AGG | - | chr4.2:12699170-12699189 | None:intergenic | 25.0% |
!! | TTTTGTGAATCTTAACTTAC+TGG | - | chr4.2:12699896-12699915 | None:intergenic | 25.0% |
!!! | AATGTGTTATGTTTTTGTAC+GGG | + | chr4.2:12696856-12696875 | MS.gene08767:intron | 25.0% |
!!! | AGAAAGTGCTTTTTATTACA+AGG | - | chr4.2:12697280-12697299 | None:intergenic | 25.0% |
!!! | CATTATTTAGTTTTTGACTG+GGG | + | chr4.2:12697901-12697920 | MS.gene08767:intron | 25.0% |
!!! | GCATTATTTAGTTTTTGACT+GGG | + | chr4.2:12697900-12697919 | MS.gene08767:intron | 25.0% |
!!! | TAAACTTTTCAAGATTCTCT+AGG | + | chr4.2:12697678-12697697 | MS.gene08767:intron | 25.0% |
!!! | TACAAGTTTTCTTTGTTTGT+AGG | + | chr4.2:12697361-12697380 | MS.gene08767:intron | 25.0% |
!!! | TGCATTATTTAGTTTTTGAC+TGG | + | chr4.2:12697899-12697918 | MS.gene08767:intron | 25.0% |
!!! | TTGTAATAAAAAGCACTTTC+TGG | + | chr4.2:12697279-12697298 | MS.gene08767:intron | 25.0% |
AAAAAGAAACAAACAGGAGT+TGG | + | chr4.2:12699470-12699489 | MS.gene08767:CDS | 30.0% | |
AACAAGGACAAAAATCTAGT+TGG | + | chr4.2:12696992-12697011 | MS.gene08767:CDS | 30.0% | |
AACACTTAAGTATCACAAAG+TGG | - | chr4.2:12699217-12699236 | None:intergenic | 30.0% | |
AACTTCTAATACTGTGTCTA+TGG | - | chr4.2:12698541-12698560 | None:intergenic | 30.0% | |
AATGGAAGATGTTAATTAGG+GGG | + | chr4.2:12699676-12699695 | MS.gene08767:intron | 30.0% | |
AATTACTGTATGTATATGCG+TGG | - | chr4.2:12697656-12697675 | None:intergenic | 30.0% | |
ACCAAAATAAGTAACAGATG+TGG | - | chr4.2:12699276-12699295 | None:intergenic | 30.0% | |
AGAGTTTATATCTACTTACG+AGG | + | chr4.2:12698001-12698020 | MS.gene08767:CDS | 30.0% | |
AGTTAGTAAGTCTGTTAGTT+TGG | - | chr4.2:12699057-12699076 | None:intergenic | 30.0% | |
ATCAATTACTCTCTTTCTTG+AGG | - | chr4.2:12698712-12698731 | None:intergenic | 30.0% | |
ATCTACTTACGAGGAAAAAT+TGG | + | chr4.2:12698010-12698029 | MS.gene08767:CDS | 30.0% | |
ATGATCGTTATCTTGTTGAT+TGG | + | chr4.2:12699952-12699971 | MS.gene08767:intron | 30.0% | |
CATGTCAAGATGAACAATAA+TGG | + | chr4.2:12696673-12696692 | MS.gene08767:CDS | 30.0% | |
CCAAAATAAGTAACAGATGT+GGG | - | chr4.2:12699275-12699294 | None:intergenic | 30.0% | |
CCTGAAATGGAGATTATAAA+GGG | + | chr4.2:12696932-12696951 | MS.gene08767:CDS | 30.0% | |
CTGATATCATTGAGGAAAAA+AGG | - | chr4.2:12697168-12697187 | None:intergenic | 30.0% | |
GACATTCATATTATTTCCTC+TGG | + | chr4.2:12697463-12697482 | MS.gene08767:CDS | 30.0% | |
GATTAATAAGCCGTTTAGTT+TGG | - | chr4.2:12699195-12699214 | None:intergenic | 30.0% | |
GCATAAAAAGTGACTTTATC+TGG | + | chr4.2:12698651-12698670 | MS.gene08767:intron | 30.0% | |
GCTTCAATATTAGAATCTCT+AGG | - | chr4.2:12697247-12697266 | None:intergenic | 30.0% | |
GGAGATTATAAAGGGAAAAA+AGG | + | chr4.2:12696940-12696959 | MS.gene08767:CDS | 30.0% | |
GTTTCCATGCAATTATTGTT+CGG | + | chr4.2:12699294-12699313 | MS.gene08767:intron | 30.0% | |
TAGTCGAAAAAGGAAAAACA+AGG | + | chr4.2:12696976-12696995 | MS.gene08767:CDS | 30.0% | |
TATAAGGTTTAACGATGCTT+TGG | + | chr4.2:12698351-12698370 | MS.gene08767:intron | 30.0% | |
TATTCAAATTATACGCATGC+AGG | - | chr4.2:12698582-12698601 | None:intergenic | 30.0% | |
TCAGGATTTCTGAATTAGTT+AGG | - | chr4.2:12698868-12698887 | None:intergenic | 30.0% | |
TCCTGAAATGGAGATTATAA+AGG | + | chr4.2:12696931-12696950 | MS.gene08767:CDS | 30.0% | |
TCTGTGATACATTATTTAGC+AGG | + | chr4.2:12698974-12698993 | MS.gene08767:intron | 30.0% | |
TCTTCCTTAAAGCAAAATAG+AGG | + | chr4.2:12698056-12698075 | MS.gene08767:intron | 30.0% | |
! | AAAGCTTTTCTGTTGCTAAT+GGG | + | chr4.2:12698412-12698431 | MS.gene08767:intron | 30.0% |
! | AATACAAGGAGAACATTTTG+GGG | - | chr4.2:12698923-12698942 | None:intergenic | 30.0% |
! | AATCTTTTTCTTCTTTTCCC+CGG | - | chr4.2:12696620-12696639 | None:intergenic | 30.0% |
! | ACATTGCGATTCTAAAGAAA+AGG | + | chr4.2:12697201-12697220 | MS.gene08767:CDS | 30.0% |
! | CAAATACAAGGAGAACATTT+TGG | - | chr4.2:12698925-12698944 | None:intergenic | 30.0% |
! | CATAGAATGCAGCTTTTAAA+GGG | + | chr4.2:12696767-12696786 | MS.gene08767:intron | 30.0% |
! | CATGCTAATGCAAATTTTGA+TGG | - | chr4.2:12699712-12699731 | None:intergenic | 30.0% |
! | GTAAAGGAAAAAAAGGCATA+CGG | + | chr4.2:12696593-12696612 | MS.gene08767:CDS | 30.0% |
! | GTTGATTTAGAAGAGCAAAA+TGG | + | chr4.2:12697040-12697059 | MS.gene08767:CDS | 30.0% |
! | TAAATTGGTTGTTTCAGTAG+TGG | + | chr4.2:12696742-12696761 | MS.gene08767:intron | 30.0% |
! | TCATAGAATGCAGCTTTTAA+AGG | + | chr4.2:12696766-12696785 | MS.gene08767:intron | 30.0% |
! | TCTCTCTTTTCTGATGATTT+TGG | - | chr4.2:12697427-12697446 | None:intergenic | 30.0% |
! | TTATTTTCCTTCATAAGGGA+GGG | + | chr4.2:12698289-12698308 | MS.gene08767:intron | 30.0% |
! | TTTTCCTCAATGATATCAGA+TGG | + | chr4.2:12697169-12697188 | MS.gene08767:intron | 30.0% |
!! | AACTCCTGTTTGTTTCTTTT+TGG | - | chr4.2:12699471-12699490 | None:intergenic | 30.0% |
!! | ATTATAAAGGGCATTGTTGT+GGG | - | chr4.2:12699157-12699176 | None:intergenic | 30.0% |
!! | GCACATTCTCTGAAATAAAT+TGG | + | chr4.2:12696727-12696746 | MS.gene08767:intron | 30.0% |
!! | TTAATAAGCCGTTTAGTTTG+GGG | - | chr4.2:12699193-12699212 | None:intergenic | 30.0% |
!!! | ATCTTGATGTTTTTTGGCTT+AGG | + | chr4.2:12698626-12698645 | MS.gene08767:intron | 30.0% |
AAAAGAGAAGCTCAGAGAAA+TGG | + | chr4.2:12699515-12699534 | MS.gene08767:CDS | 35.0% | |
AAAGAGAGAACAGAATCATC+AGG | + | chr4.2:12697438-12697457 | MS.gene08767:CDS | 35.0% | |
AAGCTACTACTAGTCGAAAA+AGG | + | chr4.2:12696966-12696985 | MS.gene08767:CDS | 35.0% | |
AATACCATCAAAGTAGACCA+GGG | + | chr4.2:12697952-12697971 | MS.gene08767:CDS | 35.0% | |
AATCTTAACTTACTGGCAGA+AGG | - | chr4.2:12699889-12699908 | None:intergenic | 35.0% | |
AATGATATCAGATGGAGTAG+TGG | + | chr4.2:12697177-12697196 | MS.gene08767:intron | 35.0% | |
AATTATTGTTCGGTCAATGC+AGG | + | chr4.2:12699304-12699323 | MS.gene08767:intron | 35.0% | |
ACATTATTTAGCAGGACGAA+TGG | + | chr4.2:12698982-12699001 | MS.gene08767:intron | 35.0% | |
ACTATTGTTAGATGTCCATC+AGG | - | chr4.2:12698899-12698918 | None:intergenic | 35.0% | |
AGCTGCTGCAGAAAATAAAT+TGG | + | chr4.2:12699445-12699464 | MS.gene08767:CDS | 35.0% | |
AGGGTTATCTGACTATAATC+AGG | - | chr4.2:12698137-12698156 | None:intergenic | 35.0% | |
ATCTCAAACCCCAAACTAAA+CGG | + | chr4.2:12699182-12699201 | MS.gene08767:intron | 35.0% | |
ATCTTAACTTACTGGCAGAA+GGG | - | chr4.2:12699888-12699907 | None:intergenic | 35.0% | |
ATGGAAGATGTTAATTAGGG+GGG | + | chr4.2:12699677-12699696 | MS.gene08767:intron | 35.0% | |
ATTAGAATCTCTAGGCTTCT+TGG | - | chr4.2:12697239-12697258 | None:intergenic | 35.0% | |
CATTATTCTTCTGCAATCAG+GGG | - | chr4.2:12698774-12698793 | None:intergenic | 35.0% | |
CCCTTTATAATCTCCATTTC+AGG | - | chr4.2:12696935-12696954 | None:intergenic | 35.0% | |
CCTTAAAGCAAAATAGAGGT+TGG | + | chr4.2:12698060-12698079 | MS.gene08767:intron | 35.0% | |
CTAAATATGCTGTTAGGATG+TGG | + | chr4.2:12698450-12698469 | MS.gene08767:intron | 35.0% | |
GAAAAAAGATGAATGTAGCC+TGG | + | chr4.2:12696789-12696808 | MS.gene08767:intron | 35.0% | |
GAGAAACATCACAGAAGATA+AGG | - | chr4.2:12699831-12699850 | None:intergenic | 35.0% | |
GATTATCCCCACTGATAAAA+GGG | - | chr4.2:12698156-12698175 | None:intergenic | 35.0% | |
GCATTATTCTTCTGCAATCA+GGG | - | chr4.2:12698775-12698794 | None:intergenic | 35.0% | |
GTGAGATGAGAGATTATGAA+GGG | - | chr4.2:12699031-12699050 | None:intergenic | 35.0% | |
TACTCCATCTGATATCATTG+AGG | - | chr4.2:12697176-12697195 | None:intergenic | 35.0% | |
TCAATATTCAGTATCCAAGC+AGG | + | chr4.2:12699112-12699131 | MS.gene08767:intron | 35.0% | |
TGAGATAGTTGGAAGAAACA+TGG | - | chr4.2:12698835-12698854 | None:intergenic | 35.0% | |
TGATTATCCCCACTGATAAA+AGG | - | chr4.2:12698157-12698176 | None:intergenic | 35.0% | |
TGCATTATTCTTCTGCAATC+AGG | - | chr4.2:12698776-12698795 | None:intergenic | 35.0% | |
TGTGAGATGAGAGATTATGA+AGG | - | chr4.2:12699032-12699051 | None:intergenic | 35.0% | |
TTACGAGGAAAAATTGGAAG+AGG | + | chr4.2:12698016-12698035 | MS.gene08767:CDS | 35.0% | |
TTCTCACTTCCCTAATATCT+TGG | + | chr4.2:12699846-12699865 | MS.gene08767:intron | 35.0% | |
TTGACCGAACAATAATTGCA+TGG | - | chr4.2:12699301-12699320 | None:intergenic | 35.0% | |
TTGGCCAAAAAGAAACAAAC+AGG | + | chr4.2:12699464-12699483 | MS.gene08767:CDS | 35.0% | |
TTTATTTCAGAGAATGTGCG+AGG | - | chr4.2:12696726-12696745 | None:intergenic | 35.0% | |
! | AAGCTTTTCTGTTGCTAATG+GGG | + | chr4.2:12698413-12698432 | MS.gene08767:intron | 35.0% |
! | AGATAACCCTTTTATCAGTG+GGG | + | chr4.2:12698147-12698166 | MS.gene08767:intron | 35.0% |
! | ATACAAGGAGAACATTTTGG+GGG | - | chr4.2:12698922-12698941 | None:intergenic | 35.0% |
! | CAAAGCTTTTCTGTTGCTAA+TGG | + | chr4.2:12698411-12698430 | MS.gene08767:intron | 35.0% |
! | CAGATAACCCTTTTATCAGT+GGG | + | chr4.2:12698146-12698165 | MS.gene08767:intron | 35.0% |
! | CCAACCTCTATTTTGCTTTA+AGG | - | chr4.2:12698063-12698082 | None:intergenic | 35.0% |
! | TCAAGATCAAAAAGCACGTA+AGG | - | chr4.2:12698613-12698632 | None:intergenic | 35.0% |
! | TCAGATAACCCTTTTATCAG+TGG | + | chr4.2:12698145-12698164 | MS.gene08767:intron | 35.0% |
! | TTGCGATTCTAAAGAAAAGG+AGG | + | chr4.2:12697204-12697223 | MS.gene08767:CDS | 35.0% |
!! | AAATGGTGAGTTGATGGTTA+CGG | + | chr4.2:12697057-12697076 | MS.gene08767:intron | 35.0% |
!! | CCCACATCTGTTACTTATTT+TGG | + | chr4.2:12699272-12699291 | MS.gene08767:intron | 35.0% |
!! | GATTATAAAGGGCATTGTTG+TGG | - | chr4.2:12699158-12699177 | None:intergenic | 35.0% |
!! | GTTATTTTCCTTCATAAGGG+AGG | + | chr4.2:12698288-12698307 | MS.gene08767:intron | 35.0% |
!! | TTGGTGCTAAATATGCTGTT+AGG | + | chr4.2:12698444-12698463 | MS.gene08767:intron | 35.0% |
!!! | GAGCTTCTCTTTTTTGAAAG+CGG | - | chr4.2:12699508-12699527 | None:intergenic | 35.0% |
AAAACTACTGACGCTGAAAG+TGG | + | chr4.2:12699398-12699417 | MS.gene08767:CDS | 40.0% | |
AAACTACTGACGCTGAAAGT+GGG | + | chr4.2:12699399-12699418 | MS.gene08767:CDS | 40.0% | |
AAATCAACTTCTCCGTCTTC+TGG | - | chr4.2:12697028-12697047 | None:intergenic | 40.0% | |
AAGATGTTAATTAGGGGGGT+TGG | + | chr4.2:12699681-12699700 | MS.gene08767:intron | 40.0% | |
AATATGCTGTTAGGATGTGG+AGG | + | chr4.2:12698453-12698472 | MS.gene08767:intron | 40.0% | |
AGATGTTAATTAGGGGGGTT+GGG | + | chr4.2:12699682-12699701 | MS.gene08767:intron | 40.0% | |
ATGTCTACATGCTCACTGAT+AGG | - | chr4.2:12697756-12697775 | None:intergenic | 40.0% | |
CTGAAAACATTATTCCGCCA+AGG | + | chr4.2:12698945-12698964 | MS.gene08767:intron | 40.0% | |
GAATACCATCAAAGTAGACC+AGG | + | chr4.2:12697951-12697970 | MS.gene08767:CDS | 40.0% | |
GCGTGGCAACTATTGTAAAT+TGG | - | chr4.2:12697639-12697658 | None:intergenic | 40.0% | |
GCTGTGTTAGTCATATAAGC+AGG | + | chr4.2:12699797-12699816 | MS.gene08767:intron | 40.0% | |
GTTAGTTGAGCTGAGATAGT+TGG | - | chr4.2:12698846-12698865 | None:intergenic | 40.0% | |
TGCTAATGGGGTATGTTAGT+TGG | + | chr4.2:12698425-12698444 | MS.gene08767:intron | 40.0% | |
TGGAAGAAACATGGCATGTT+GGG | - | chr4.2:12698826-12698845 | None:intergenic | 40.0% | |
TGTATCACAGATTGGAACCT+TGG | - | chr4.2:12698965-12698984 | None:intergenic | 40.0% | |
TGTTTCAGTGGATCCTGAAA+TGG | + | chr4.2:12696919-12696938 | MS.gene08767:intron | 40.0% | |
TTGGAAGAAACATGGCATGT+TGG | - | chr4.2:12698827-12698846 | None:intergenic | 40.0% | |
TTGTACACAGTATATACGCC+AGG | - | chr4.2:12696810-12696829 | None:intergenic | 40.0% | |
! | AGAGCAAAATGGTGAGTTGA+TGG | + | chr4.2:12697051-12697070 | MS.gene08767:intron | 40.0% |
! | CTGATTTAAGACAGCGTCTA+GGG | - | chr4.2:12700050-12700069 | None:intergenic | 40.0% |
! | TAGTTTTCTTCCTACCCTTG+TGG | - | chr4.2:12699385-12699404 | None:intergenic | 40.0% |
! | TCTTTCAACCTGTTGACTAC+TGG | + | chr4.2:12697791-12697810 | MS.gene08767:intron | 40.0% |
! | TGATTTAAGACAGCGTCTAG+GGG | - | chr4.2:12700049-12700068 | None:intergenic | 40.0% |
! | TGTTTTGCTTGCAGAGCTAA+TGG | + | chr4.2:12700123-12700142 | MS.gene08767:intron | 40.0% |
!! | AATGGTGAGTTGATGGTTAC+GGG | + | chr4.2:12697058-12697077 | MS.gene08767:intron | 40.0% |
!! | ATTATGAAGGGCATTGTCGT+GGG | - | chr4.2:12699019-12699038 | None:intergenic | 40.0% |
ACCACATTCCAGTAGTCAAC+AGG | - | chr4.2:12697802-12697821 | None:intergenic | 45.0% | |
ACTGCAGAGCAAATTTGAGG+AGG | + | chr4.2:12700147-12700166 | MS.gene08767:CDS | 45.0% | |
AGCATCAAGTGCTAAGCACA+TGG | - | chr4.2:12698379-12698398 | None:intergenic | 45.0% | |
ATCACAGATTGGAACCTTGG+CGG | - | chr4.2:12698962-12698981 | None:intergenic | 45.0% | |
ATGCTCACTGATAGGCAGTA+GGG | - | chr4.2:12697748-12697767 | None:intergenic | 45.0% | |
ATGTTAATTAGGGGGGTTGG+GGG | + | chr4.2:12699684-12699703 | MS.gene08767:intron | 45.0% | |
CGAGGCTCATTCATGCTTTA+CGG | + | chr4.2:12700003-12700022 | MS.gene08767:intron | 45.0% | |
GAAACATGGCATGTTGGGTA+AGG | - | chr4.2:12698821-12698840 | None:intergenic | 45.0% | |
GATGTTAATTAGGGGGGTTG+GGG | + | chr4.2:12699683-12699702 | MS.gene08767:intron | 45.0% | |
GGAACTGCAGAGCAAATTTG+AGG | + | chr4.2:12700144-12700163 | MS.gene08767:CDS | 45.0% | |
GGAATACTCAAACCACAGAG+TGG | + | chr4.2:12697922-12697941 | MS.gene08767:intron | 45.0% | |
GGAGATGATGACTGCTCAAA+TGG | + | chr4.2:12697484-12697503 | MS.gene08767:CDS | 45.0% | |
GTATTCCATGATCCACTCTG+TGG | - | chr4.2:12697937-12697956 | None:intergenic | 45.0% | |
TAGATGTCCATCAGGACTGT+TGG | - | chr4.2:12698891-12698910 | None:intergenic | 45.0% | |
TCAAACCACAGAGTGGATCA+TGG | + | chr4.2:12697929-12697948 | MS.gene08767:intron | 45.0% | |
! | AAAAAAAGGCATACGGACCG+GGG | + | chr4.2:12696600-12696619 | MS.gene08767:CDS | 45.0% |
! | ACCTGTTGACTACTGGAATG+TGG | + | chr4.2:12697798-12697817 | MS.gene08767:intron | 45.0% |
! | GAAAAAAAGGCATACGGACC+GGG | + | chr4.2:12696599-12696618 | MS.gene08767:CDS | 45.0% |
! | GCTGATTTAAGACAGCGTCT+AGG | - | chr4.2:12700051-12700070 | None:intergenic | 45.0% |
! | GGAAAAAAAGGCATACGGAC+CGG | + | chr4.2:12696598-12696617 | MS.gene08767:CDS | 45.0% |
!! | CATTGTTGTGGGAGAGTACT+AGG | - | chr4.2:12699146-12699165 | None:intergenic | 45.0% |
!! | GATTATGAAGGGCATTGTCG+TGG | - | chr4.2:12699020-12699039 | None:intergenic | 45.0% |
!!! | ATAAAATCATATAATTTTTA+AGG | - | chr4.2:12699982-12700001 | None:intergenic | 5.0% |
AAAGAAGCCCTTGCTGCAGA+AGG | + | chr4.2:12699338-12699357 | MS.gene08767:CDS | 50.0% | |
ACATGGCATGTTGGGTAAGG+AGG | - | chr4.2:12698818-12698837 | None:intergenic | 50.0% | |
ACTAGGTCTTTCGTCCTGCT+TGG | - | chr4.2:12699129-12699148 | None:intergenic | 50.0% | |
ACTTCTCCGTCTTCTGGTGT+TGG | - | chr4.2:12697022-12697041 | None:intergenic | 50.0% | |
AGTAGGGTGGATGTTGGCAA+AGG | - | chr4.2:12697732-12697751 | None:intergenic | 50.0% | |
ATAGGCAGTAGGGTGGATGT+TGG | - | chr4.2:12697738-12697757 | None:intergenic | 50.0% | |
ATCCTGACCAACAGTCCTGA+TGG | + | chr4.2:12698881-12698900 | MS.gene08767:intron | 50.0% | |
CATGCTCACTGATAGGCAGT+AGG | - | chr4.2:12697749-12697768 | None:intergenic | 50.0% | |
CCAACCCTGGTCTACTTTGA+TGG | - | chr4.2:12697959-12697978 | None:intergenic | 50.0% | |
CCATCAAAGTAGACCAGGGT+TGG | + | chr4.2:12697956-12697975 | MS.gene08767:CDS | 50.0% | |
CCTTCATAAGGGAGGGCTAA+GGG | + | chr4.2:12698296-12698315 | MS.gene08767:intron | 50.0% | |
GCTGAAAGTGGGATTGCTGT+GGG | + | chr4.2:12699410-12699429 | MS.gene08767:CDS | 50.0% | |
GGAAGACCAACACCAGAAGA+CGG | + | chr4.2:12697013-12697032 | MS.gene08767:CDS | 50.0% | |
GTCTAGGGGTGAGGGAAAAT+GGG | - | chr4.2:12700035-12700054 | None:intergenic | 50.0% | |
TCAAAGTAGACCAGGGTTGG+AGG | + | chr4.2:12697959-12697978 | MS.gene08767:CDS | 50.0% | |
TCCTTCATAAGGGAGGGCTA+AGG | + | chr4.2:12698295-12698314 | MS.gene08767:intron | 50.0% | |
TCTAGGGGTGAGGGAAAATG+GGG | - | chr4.2:12700034-12700053 | None:intergenic | 50.0% | |
TGAGCAGTCATCATCTCCAG+AGG | - | chr4.2:12697482-12697501 | None:intergenic | 50.0% | |
TGCAACAGTTGAGAGCTGCT+AGG | + | chr4.2:12700182-12700201 | MS.gene08767:CDS | 50.0% | |
TGTTGCAAAACCTCCAACCC+TGG | - | chr4.2:12697972-12697991 | None:intergenic | 50.0% | |
!! | CATTGTCGTGGGAGAGTACT+AGG | - | chr4.2:12699008-12699027 | None:intergenic | 50.0% |
!! | TGAGTTGATGGTTACGGGTG+TGG | + | chr4.2:12697063-12697082 | MS.gene08767:intron | 50.0% |
AAGACAGCGTCTAGGGGTGA+GGG | - | chr4.2:12700043-12700062 | None:intergenic | 55.0% | |
AAGTGGGATTGCTGTGGGCT+CGG | + | chr4.2:12699415-12699434 | MS.gene08767:CDS | 55.0% | |
ACGGTGGTTCAGCACCACAA+GGG | + | chr4.2:12699368-12699387 | MS.gene08767:CDS | 55.0% | |
CCATCCTCCTTCTGCAGCAA+GGG | - | chr4.2:12699348-12699367 | None:intergenic | 55.0% | |
CCCTTAGCCCTCCCTTATGA+AGG | - | chr4.2:12698299-12698318 | None:intergenic | 55.0% | |
CGCTGAAAGTGGGATTGCTG+TGG | + | chr4.2:12699409-12699428 | MS.gene08767:CDS | 55.0% | |
CGTCTAGGGGTGAGGGAAAA+TGG | - | chr4.2:12700036-12700055 | None:intergenic | 55.0% | |
CTCACTGATAGGCAGTAGGG+TGG | - | chr4.2:12697745-12697764 | None:intergenic | 55.0% | |
GTCCATCAGGACTGTTGGTC+AGG | - | chr4.2:12698886-12698905 | None:intergenic | 55.0% | |
TAAGACAGCGTCTAGGGGTG+AGG | - | chr4.2:12700044-12700063 | None:intergenic | 55.0% | |
TCCATCCTCCTTCTGCAGCA+AGG | - | chr4.2:12699349-12699368 | None:intergenic | 55.0% | |
TGCTGCAGAAGGAGGATGGA+CGG | + | chr4.2:12699349-12699368 | MS.gene08767:CDS | 55.0% | |
TGGTTCAGCACCACAAGGGT+AGG | + | chr4.2:12699372-12699391 | MS.gene08767:CDS | 55.0% | |
CCCTTGCTGCAGAAGGAGGA+TGG | + | chr4.2:12699345-12699364 | MS.gene08767:CDS | 60.0% | |
GAAGCCCTTGCTGCAGAAGG+AGG | + | chr4.2:12699341-12699360 | MS.gene08767:CDS | 60.0% | |
GACGGTGGTTCAGCACCACA+AGG | + | chr4.2:12699367-12699386 | MS.gene08767:CDS | 60.0% | |
TGCAGAAGGAGGATGGACGG+TGG | + | chr4.2:12699352-12699371 | MS.gene08767:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 12696580 | 12700222 | 12696580 | ID=MS.gene08767 |
chr4.2 | mRNA | 12696580 | 12700222 | 12696580 | ID=MS.gene08767.t1;Parent=MS.gene08767 |
chr4.2 | exon | 12696580 | 12696694 | 12696580 | ID=MS.gene08767.t1.exon1;Parent=MS.gene08767.t1 |
chr4.2 | CDS | 12696580 | 12696694 | 12696580 | ID=cds.MS.gene08767.t1;Parent=MS.gene08767.t1 |
chr4.2 | exon | 12696927 | 12697061 | 12696927 | ID=MS.gene08767.t1.exon2;Parent=MS.gene08767.t1 |
chr4.2 | CDS | 12696927 | 12697061 | 12696927 | ID=cds.MS.gene08767.t1;Parent=MS.gene08767.t1 |
chr4.2 | exon | 12697188 | 12697280 | 12697188 | ID=MS.gene08767.t1.exon3;Parent=MS.gene08767.t1 |
chr4.2 | CDS | 12697188 | 12697280 | 12697188 | ID=cds.MS.gene08767.t1;Parent=MS.gene08767.t1 |
chr4.2 | exon | 12697383 | 12697514 | 12697383 | ID=MS.gene08767.t1.exon4;Parent=MS.gene08767.t1 |
chr4.2 | CDS | 12697383 | 12697514 | 12697383 | ID=cds.MS.gene08767.t1;Parent=MS.gene08767.t1 |
chr4.2 | exon | 12697940 | 12698037 | 12697940 | ID=MS.gene08767.t1.exon5;Parent=MS.gene08767.t1 |
chr4.2 | CDS | 12697940 | 12698037 | 12697940 | ID=cds.MS.gene08767.t1;Parent=MS.gene08767.t1 |
chr4.2 | exon | 12699326 | 12699536 | 12699326 | ID=MS.gene08767.t1.exon6;Parent=MS.gene08767.t1 |
chr4.2 | CDS | 12699326 | 12699536 | 12699326 | ID=cds.MS.gene08767.t1;Parent=MS.gene08767.t1 |
chr4.2 | exon | 12700137 | 12700222 | 12700137 | ID=MS.gene08767.t1.exon7;Parent=MS.gene08767.t1 |
chr4.2 | CDS | 12700137 | 12700222 | 12700137 | ID=cds.MS.gene08767.t1;Parent=MS.gene08767.t1 |
Gene Sequence |
Protein sequence |