AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08767


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08767.t1 MTR_8g085800 82.335 334 14 1 1 289 1 334 0.0 541
MS.gene08767.t1 MTR_4g051625 75.449 334 35 3 1 289 1 332 1.13e-171 478
MS.gene08767.t1 MTR_4g051625 81.356 295 44 5 2 289 87 377 4.09e-165 463
MS.gene08767.t1 MTR_1g090650 79.618 157 32 0 133 289 32 188 7.51e-88 260
MS.gene08767.t1 MTR_8g085830 63.636 99 9 2 191 289 2 73 1.88e-32 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08767.t1 AT5G38720 65.101 149 51 1 142 289 165 313 5.25e-69 216
MS.gene08767.t1 AT5G38720 65.101 149 51 1 142 289 158 306 5.48e-69 216
MS.gene08767.t1 AT5G38720 65.101 149 51 1 142 289 177 325 3.36e-68 215

Find 50 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTATAATCTCCATTTC+AGG 0.169996 4.2:-12696932 None:intergenic
ATTAGAATCTCTAGGCTTCT+TGG 0.261565 4.2:-12697236 None:intergenic
AAATCAACTTCTCCGTCTTC+TGG 0.314037 4.2:-12697025 None:intergenic
AGCTGCTGCAGAAAATAAAT+TGG 0.319112 4.2:+12699445 MS.gene08767:CDS
GCAATCAACATCATTTAATA+AGG 0.321323 4.2:-12700214 None:intergenic
GTTGATTTAGAAGAGCAAAA+TGG 0.348945 4.2:+12697040 MS.gene08767:CDS
TCCTGAAATGGAGATTATAA+AGG 0.363253 4.2:+12696931 MS.gene08767:CDS
GACATTCATATTATTTCCTC+TGG 0.367904 4.2:+12697463 MS.gene08767:CDS
CCAACCCTGGTCTACTTTGA+TGG 0.384521 4.2:-12697956 None:intergenic
AAGCTACTACTAGTCGAAAA+AGG 0.390121 4.2:+12696966 MS.gene08767:CDS
ACTTCTCCGTCTTCTGGTGT+TGG 0.434297 4.2:-12697019 None:intergenic
GGAGATGATGACTGCTCAAA+TGG 0.443319 4.2:+12697484 MS.gene08767:CDS
AAAAGAGAAGCTCAGAGAAA+TGG 0.446445 4.2:+12699515 MS.gene08767:CDS
TCCTTTACTAACTTTCATCA+TGG 0.465522 4.2:-12696578 None:intergenic
CCTGAAATGGAGATTATAAA+GGG 0.465886 4.2:+12696932 MS.gene08767:CDS
TGTTTCAGTGGATCCTGAAA+TGG 0.466212 4.2:+12696919 MS.gene08767:intron
TCCATCCTCCTTCTGCAGCA+AGG 0.468377 4.2:-12699346 None:intergenic
CATGTCAAGATGAACAATAA+TGG 0.472762 4.2:+12696673 MS.gene08767:CDS
AAGTGGGATTGCTGTGGGCT+CGG 0.474663 4.2:+12699415 MS.gene08767:CDS
AAAGAGAGAACAGAATCATC+AGG 0.479042 4.2:+12697438 MS.gene08767:CDS
CCATCCTCCTTCTGCAGCAA+GGG 0.496362 4.2:-12699345 None:intergenic
GCCATGATGAAAGTTAGTAA+AGG 0.506664 4.2:+12696577 None:intergenic
CGCTGAAAGTGGGATTGCTG+TGG 0.507910 4.2:+12699409 MS.gene08767:CDS
ACATTGCGATTCTAAAGAAA+AGG 0.526954 4.2:+12697201 MS.gene08767:CDS
AAAACTACTGACGCTGAAAG+TGG 0.530432 4.2:+12699398 MS.gene08767:CDS
CCATCAAAGTAGACCAGGGT+TGG 0.532437 4.2:+12697956 MS.gene08767:CDS
TGTTGCAAAACCTCCAACCC+TGG 0.543861 4.2:-12697969 None:intergenic
CCCTTGCTGCAGAAGGAGGA+TGG 0.545811 4.2:+12699345 MS.gene08767:CDS
GGAACTGCAGAGCAAATTTG+AGG 0.547063 4.2:+12700144 MS.gene08767:CDS
TCAAACCACAGAGTGGATCA+TGG 0.547910 4.2:+12697929 MS.gene08767:intron
TCAAAGTAGACCAGGGTTGG+AGG 0.548210 4.2:+12697959 MS.gene08767:CDS
AAAGAAGCCCTTGCTGCAGA+AGG 0.553866 4.2:+12699338 MS.gene08767:CDS
TGCTGCAGAAGGAGGATGGA+CGG 0.572937 4.2:+12699349 MS.gene08767:CDS
GAAGCCCTTGCTGCAGAAGG+AGG 0.575071 4.2:+12699341 MS.gene08767:CDS
AAACTACTGACGCTGAAAGT+GGG 0.579773 4.2:+12699399 MS.gene08767:CDS
GCTGAAAGTGGGATTGCTGT+GGG 0.581833 4.2:+12699410 MS.gene08767:CDS
GAATACCATCAAAGTAGACC+AGG 0.581962 4.2:+12697951 MS.gene08767:CDS
GCTTCAATATTAGAATCTCT+AGG 0.587785 4.2:-12697244 None:intergenic
GACGGTGGTTCAGCACCACA+AGG 0.611340 4.2:+12699367 MS.gene08767:CDS
AATGATATCAGATGGAGTAG+TGG 0.617694 4.2:+12697177 MS.gene08767:intron
TGGTTCAGCACCACAAGGGT+AGG 0.619462 4.2:+12699372 MS.gene08767:CDS
TTGCGATTCTAAAGAAAAGG+AGG 0.620382 4.2:+12697204 MS.gene08767:CDS
GGAAGACCAACACCAGAAGA+CGG 0.621600 4.2:+12697013 MS.gene08767:CDS
TGCAACAGTTGAGAGCTGCT+AGG 0.650823 4.2:+12700182 MS.gene08767:CDS
TGAGCAGTCATCATCTCCAG+AGG 0.681253 4.2:-12697479 None:intergenic
ACTGCAGAGCAAATTTGAGG+AGG 0.684181 4.2:+12700147 MS.gene08767:CDS
AGAGTTTATATCTACTTACG+AGG 0.689415 4.2:+12698001 MS.gene08767:CDS
TGCAGAAGGAGGATGGACGG+TGG 0.709610 4.2:+12699352 MS.gene08767:CDS
AATACCATCAAAGTAGACCA+GGG 0.721380 4.2:+12697952 MS.gene08767:CDS
ACGGTGGTTCAGCACCACAA+GGG 0.735362 4.2:+12699368 MS.gene08767:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAATTTATAATAAAATTCA+TGG - chr4.2:12698182-12698201 None:intergenic 10.0%
!! TTAATATTTATTGTTATACA+TGG + chr4.2:12697844-12697863 MS.gene08767:intron 10.0%
!!! TTTTAGTTTAAGAAATATTA+GGG + chr4.2:12699766-12699785 MS.gene08767:intron 10.0%
!! ATAATTCAGTTTGTATTTAT+AGG + chr4.2:12698476-12698495 MS.gene08767:intron 15.0%
!! ATTAAATATACAATAGCATA+TGG - chr4.2:12697829-12697848 None:intergenic 15.0%
!! TAATTCAGTTTGTATTTATA+GGG + chr4.2:12698477-12698496 MS.gene08767:intron 15.0%
!! TTAAATATACAATAGCATAT+GGG - chr4.2:12697828-12697847 None:intergenic 15.0%
!!! AATGATTTTTTTTGTAATGT+CGG + chr4.2:12697587-12697606 MS.gene08767:intron 15.0%
!!! CTTTTAGTTTAAGAAATATT+AGG + chr4.2:12699765-12699784 MS.gene08767:intron 15.0%
!! AAAGTTAGTAAAGGAAAAAA+AGG + chr4.2:12696586-12696605 MS.gene08767:CDS 20.0%
!! CAAGTTATTATAGTTGTATA+AGG + chr4.2:12698335-12698354 MS.gene08767:intron 20.0%
!! CTTATACAACTATAATAACT+TGG - chr4.2:12698337-12698356 None:intergenic 20.0%
!! TCATAACTGAATATTGAATA+AGG - chr4.2:12699247-12699266 None:intergenic 20.0%
!! TTAAGAAATATTAGGGTTAT+TGG + chr4.2:12699773-12699792 MS.gene08767:intron 20.0%
!! TTCAATCAACTGAAATAAAT+TGG + chr4.2:12696895-12696914 MS.gene08767:intron 20.0%
!!! AAAAGTTATTTTCCTTCATA+AGG + chr4.2:12698284-12698303 MS.gene08767:intron 20.0%
!!! AAAGTTATTTTCCTTCATAA+GGG + chr4.2:12698285-12698304 MS.gene08767:intron 20.0%
!!! AAATGTGTTATGTTTTTGTA+CGG + chr4.2:12696855-12696874 MS.gene08767:intron 20.0%
!!! AAATTATATGATTTTATGCG+AGG + chr4.2:12699985-12700004 MS.gene08767:intron 20.0%
!!! AACAGTTTTGGTTTAAATAA+TGG + chr4.2:12699658-12699677 MS.gene08767:intron 20.0%
!!! AATAATGGAAGATGTTAATT+AGG + chr4.2:12699673-12699692 MS.gene08767:intron 20.0%
!!! ATAATGGAAGATGTTAATTA+GGG + chr4.2:12699674-12699693 MS.gene08767:intron 20.0%
!!! CTTTTACATGTTATTTTTCA+AGG - chr4.2:12698269-12698288 None:intergenic 20.0%
!!! GTATTTTATGAGTAAGAATA+GGG + chr4.2:12698741-12698760 MS.gene08767:intron 20.0%
!!! TAAATTTAAACGAACAGTTT+TGG + chr4.2:12699646-12699665 MS.gene08767:intron 20.0%
!!! TTGTATAATTACTAGTTCTA+TGG + chr4.2:12698243-12698262 MS.gene08767:intron 20.0%
!!! TTTTTGATCTTGATGTTTTT+TGG + chr4.2:12698620-12698639 MS.gene08767:intron 20.0%
! AAAAATGAATGTATGACTTC+AGG - chr4.2:12697337-12697356 None:intergenic 25.0%
! AGAATAATGCAAAATCATGA+AGG + chr4.2:12698785-12698804 MS.gene08767:intron 25.0%
! AGCTAAGAAAAAAAGAAGAA+AGG + chr4.2:12697396-12697415 MS.gene08767:CDS 25.0%
! ATCATAGAAACCAAGATATT+AGG - chr4.2:12699859-12699878 None:intergenic 25.0%
! CTAAATAATGTATCACAGAT+TGG - chr4.2:12698973-12698992 None:intergenic 25.0%
! GAGAGTAATTGATAGAAATA+TGG + chr4.2:12698719-12698738 MS.gene08767:intron 25.0%
! TAAGAAAAAAAGAAGAAAGG+AGG + chr4.2:12697399-12697418 MS.gene08767:CDS 25.0%
! TAATGGAAGATGTTAATTAG+GGG + chr4.2:12699675-12699694 MS.gene08767:intron 25.0%
! TCATAGAAACCAAGATATTA+GGG - chr4.2:12699858-12699877 None:intergenic 25.0%
! TCATCTACGATATGAATATA+TGG - chr4.2:12699567-12699586 None:intergenic 25.0%
! TGGATACTGAATATTGAATA+TGG - chr4.2:12699109-12699128 None:intergenic 25.0%
! TTGAGATGAGAGATTATAAA+GGG - chr4.2:12699169-12699188 None:intergenic 25.0%
!! AAATAAATTGGTTGTTTCAG+TGG + chr4.2:12696739-12696758 MS.gene08767:intron 25.0%
!! AAATACAAGGAGAACATTTT+GGG - chr4.2:12698924-12698943 None:intergenic 25.0%
!! ACTAATCATGTTCATGATTT+TGG + chr4.2:12697109-12697128 MS.gene08767:intron 25.0%
!! ATTAATAAGCCGTTTAGTTT+GGG - chr4.2:12699194-12699213 None:intergenic 25.0%
!! GGTATTTTATGAGTAAGAAT+AGG + chr4.2:12698740-12698759 MS.gene08767:intron 25.0%
!! TAATGTTTTCAGCAAATACA+AGG - chr4.2:12698937-12698956 None:intergenic 25.0%
!! TTTGAGATGAGAGATTATAA+AGG - chr4.2:12699170-12699189 None:intergenic 25.0%
!! TTTTGTGAATCTTAACTTAC+TGG - chr4.2:12699896-12699915 None:intergenic 25.0%
!!! AATGTGTTATGTTTTTGTAC+GGG + chr4.2:12696856-12696875 MS.gene08767:intron 25.0%
!!! AGAAAGTGCTTTTTATTACA+AGG - chr4.2:12697280-12697299 None:intergenic 25.0%
!!! CATTATTTAGTTTTTGACTG+GGG + chr4.2:12697901-12697920 MS.gene08767:intron 25.0%
!!! GCATTATTTAGTTTTTGACT+GGG + chr4.2:12697900-12697919 MS.gene08767:intron 25.0%
!!! TAAACTTTTCAAGATTCTCT+AGG + chr4.2:12697678-12697697 MS.gene08767:intron 25.0%
!!! TACAAGTTTTCTTTGTTTGT+AGG + chr4.2:12697361-12697380 MS.gene08767:intron 25.0%
!!! TGCATTATTTAGTTTTTGAC+TGG + chr4.2:12697899-12697918 MS.gene08767:intron 25.0%
!!! TTGTAATAAAAAGCACTTTC+TGG + chr4.2:12697279-12697298 MS.gene08767:intron 25.0%
AAAAAGAAACAAACAGGAGT+TGG + chr4.2:12699470-12699489 MS.gene08767:CDS 30.0%
AACAAGGACAAAAATCTAGT+TGG + chr4.2:12696992-12697011 MS.gene08767:CDS 30.0%
AACACTTAAGTATCACAAAG+TGG - chr4.2:12699217-12699236 None:intergenic 30.0%
AACTTCTAATACTGTGTCTA+TGG - chr4.2:12698541-12698560 None:intergenic 30.0%
AATGGAAGATGTTAATTAGG+GGG + chr4.2:12699676-12699695 MS.gene08767:intron 30.0%
AATTACTGTATGTATATGCG+TGG - chr4.2:12697656-12697675 None:intergenic 30.0%
ACCAAAATAAGTAACAGATG+TGG - chr4.2:12699276-12699295 None:intergenic 30.0%
AGAGTTTATATCTACTTACG+AGG + chr4.2:12698001-12698020 MS.gene08767:CDS 30.0%
AGTTAGTAAGTCTGTTAGTT+TGG - chr4.2:12699057-12699076 None:intergenic 30.0%
ATCAATTACTCTCTTTCTTG+AGG - chr4.2:12698712-12698731 None:intergenic 30.0%
ATCTACTTACGAGGAAAAAT+TGG + chr4.2:12698010-12698029 MS.gene08767:CDS 30.0%
ATGATCGTTATCTTGTTGAT+TGG + chr4.2:12699952-12699971 MS.gene08767:intron 30.0%
CATGTCAAGATGAACAATAA+TGG + chr4.2:12696673-12696692 MS.gene08767:CDS 30.0%
CCAAAATAAGTAACAGATGT+GGG - chr4.2:12699275-12699294 None:intergenic 30.0%
CCTGAAATGGAGATTATAAA+GGG + chr4.2:12696932-12696951 MS.gene08767:CDS 30.0%
CTGATATCATTGAGGAAAAA+AGG - chr4.2:12697168-12697187 None:intergenic 30.0%
GACATTCATATTATTTCCTC+TGG + chr4.2:12697463-12697482 MS.gene08767:CDS 30.0%
GATTAATAAGCCGTTTAGTT+TGG - chr4.2:12699195-12699214 None:intergenic 30.0%
GCATAAAAAGTGACTTTATC+TGG + chr4.2:12698651-12698670 MS.gene08767:intron 30.0%
GCTTCAATATTAGAATCTCT+AGG - chr4.2:12697247-12697266 None:intergenic 30.0%
GGAGATTATAAAGGGAAAAA+AGG + chr4.2:12696940-12696959 MS.gene08767:CDS 30.0%
GTTTCCATGCAATTATTGTT+CGG + chr4.2:12699294-12699313 MS.gene08767:intron 30.0%
TAGTCGAAAAAGGAAAAACA+AGG + chr4.2:12696976-12696995 MS.gene08767:CDS 30.0%
TATAAGGTTTAACGATGCTT+TGG + chr4.2:12698351-12698370 MS.gene08767:intron 30.0%
TATTCAAATTATACGCATGC+AGG - chr4.2:12698582-12698601 None:intergenic 30.0%
TCAGGATTTCTGAATTAGTT+AGG - chr4.2:12698868-12698887 None:intergenic 30.0%
TCCTGAAATGGAGATTATAA+AGG + chr4.2:12696931-12696950 MS.gene08767:CDS 30.0%
TCTGTGATACATTATTTAGC+AGG + chr4.2:12698974-12698993 MS.gene08767:intron 30.0%
TCTTCCTTAAAGCAAAATAG+AGG + chr4.2:12698056-12698075 MS.gene08767:intron 30.0%
! AAAGCTTTTCTGTTGCTAAT+GGG + chr4.2:12698412-12698431 MS.gene08767:intron 30.0%
! AATACAAGGAGAACATTTTG+GGG - chr4.2:12698923-12698942 None:intergenic 30.0%
! AATCTTTTTCTTCTTTTCCC+CGG - chr4.2:12696620-12696639 None:intergenic 30.0%
! ACATTGCGATTCTAAAGAAA+AGG + chr4.2:12697201-12697220 MS.gene08767:CDS 30.0%
! CAAATACAAGGAGAACATTT+TGG - chr4.2:12698925-12698944 None:intergenic 30.0%
! CATAGAATGCAGCTTTTAAA+GGG + chr4.2:12696767-12696786 MS.gene08767:intron 30.0%
! CATGCTAATGCAAATTTTGA+TGG - chr4.2:12699712-12699731 None:intergenic 30.0%
! GTAAAGGAAAAAAAGGCATA+CGG + chr4.2:12696593-12696612 MS.gene08767:CDS 30.0%
! GTTGATTTAGAAGAGCAAAA+TGG + chr4.2:12697040-12697059 MS.gene08767:CDS 30.0%
! TAAATTGGTTGTTTCAGTAG+TGG + chr4.2:12696742-12696761 MS.gene08767:intron 30.0%
! TCATAGAATGCAGCTTTTAA+AGG + chr4.2:12696766-12696785 MS.gene08767:intron 30.0%
! TCTCTCTTTTCTGATGATTT+TGG - chr4.2:12697427-12697446 None:intergenic 30.0%
! TTATTTTCCTTCATAAGGGA+GGG + chr4.2:12698289-12698308 MS.gene08767:intron 30.0%
! TTTTCCTCAATGATATCAGA+TGG + chr4.2:12697169-12697188 MS.gene08767:intron 30.0%
!! AACTCCTGTTTGTTTCTTTT+TGG - chr4.2:12699471-12699490 None:intergenic 30.0%
!! ATTATAAAGGGCATTGTTGT+GGG - chr4.2:12699157-12699176 None:intergenic 30.0%
!! GCACATTCTCTGAAATAAAT+TGG + chr4.2:12696727-12696746 MS.gene08767:intron 30.0%
!! TTAATAAGCCGTTTAGTTTG+GGG - chr4.2:12699193-12699212 None:intergenic 30.0%
!!! ATCTTGATGTTTTTTGGCTT+AGG + chr4.2:12698626-12698645 MS.gene08767:intron 30.0%
AAAAGAGAAGCTCAGAGAAA+TGG + chr4.2:12699515-12699534 MS.gene08767:CDS 35.0%
AAAGAGAGAACAGAATCATC+AGG + chr4.2:12697438-12697457 MS.gene08767:CDS 35.0%
AAGCTACTACTAGTCGAAAA+AGG + chr4.2:12696966-12696985 MS.gene08767:CDS 35.0%
AATACCATCAAAGTAGACCA+GGG + chr4.2:12697952-12697971 MS.gene08767:CDS 35.0%
AATCTTAACTTACTGGCAGA+AGG - chr4.2:12699889-12699908 None:intergenic 35.0%
AATGATATCAGATGGAGTAG+TGG + chr4.2:12697177-12697196 MS.gene08767:intron 35.0%
AATTATTGTTCGGTCAATGC+AGG + chr4.2:12699304-12699323 MS.gene08767:intron 35.0%
ACATTATTTAGCAGGACGAA+TGG + chr4.2:12698982-12699001 MS.gene08767:intron 35.0%
ACTATTGTTAGATGTCCATC+AGG - chr4.2:12698899-12698918 None:intergenic 35.0%
AGCTGCTGCAGAAAATAAAT+TGG + chr4.2:12699445-12699464 MS.gene08767:CDS 35.0%
AGGGTTATCTGACTATAATC+AGG - chr4.2:12698137-12698156 None:intergenic 35.0%
ATCTCAAACCCCAAACTAAA+CGG + chr4.2:12699182-12699201 MS.gene08767:intron 35.0%
ATCTTAACTTACTGGCAGAA+GGG - chr4.2:12699888-12699907 None:intergenic 35.0%
ATGGAAGATGTTAATTAGGG+GGG + chr4.2:12699677-12699696 MS.gene08767:intron 35.0%
ATTAGAATCTCTAGGCTTCT+TGG - chr4.2:12697239-12697258 None:intergenic 35.0%
CATTATTCTTCTGCAATCAG+GGG - chr4.2:12698774-12698793 None:intergenic 35.0%
CCCTTTATAATCTCCATTTC+AGG - chr4.2:12696935-12696954 None:intergenic 35.0%
CCTTAAAGCAAAATAGAGGT+TGG + chr4.2:12698060-12698079 MS.gene08767:intron 35.0%
CTAAATATGCTGTTAGGATG+TGG + chr4.2:12698450-12698469 MS.gene08767:intron 35.0%
GAAAAAAGATGAATGTAGCC+TGG + chr4.2:12696789-12696808 MS.gene08767:intron 35.0%
GAGAAACATCACAGAAGATA+AGG - chr4.2:12699831-12699850 None:intergenic 35.0%
GATTATCCCCACTGATAAAA+GGG - chr4.2:12698156-12698175 None:intergenic 35.0%
GCATTATTCTTCTGCAATCA+GGG - chr4.2:12698775-12698794 None:intergenic 35.0%
GTGAGATGAGAGATTATGAA+GGG - chr4.2:12699031-12699050 None:intergenic 35.0%
TACTCCATCTGATATCATTG+AGG - chr4.2:12697176-12697195 None:intergenic 35.0%
TCAATATTCAGTATCCAAGC+AGG + chr4.2:12699112-12699131 MS.gene08767:intron 35.0%
TGAGATAGTTGGAAGAAACA+TGG - chr4.2:12698835-12698854 None:intergenic 35.0%
TGATTATCCCCACTGATAAA+AGG - chr4.2:12698157-12698176 None:intergenic 35.0%
TGCATTATTCTTCTGCAATC+AGG - chr4.2:12698776-12698795 None:intergenic 35.0%
TGTGAGATGAGAGATTATGA+AGG - chr4.2:12699032-12699051 None:intergenic 35.0%
TTACGAGGAAAAATTGGAAG+AGG + chr4.2:12698016-12698035 MS.gene08767:CDS 35.0%
TTCTCACTTCCCTAATATCT+TGG + chr4.2:12699846-12699865 MS.gene08767:intron 35.0%
TTGACCGAACAATAATTGCA+TGG - chr4.2:12699301-12699320 None:intergenic 35.0%
TTGGCCAAAAAGAAACAAAC+AGG + chr4.2:12699464-12699483 MS.gene08767:CDS 35.0%
TTTATTTCAGAGAATGTGCG+AGG - chr4.2:12696726-12696745 None:intergenic 35.0%
! AAGCTTTTCTGTTGCTAATG+GGG + chr4.2:12698413-12698432 MS.gene08767:intron 35.0%
! AGATAACCCTTTTATCAGTG+GGG + chr4.2:12698147-12698166 MS.gene08767:intron 35.0%
! ATACAAGGAGAACATTTTGG+GGG - chr4.2:12698922-12698941 None:intergenic 35.0%
! CAAAGCTTTTCTGTTGCTAA+TGG + chr4.2:12698411-12698430 MS.gene08767:intron 35.0%
! CAGATAACCCTTTTATCAGT+GGG + chr4.2:12698146-12698165 MS.gene08767:intron 35.0%
! CCAACCTCTATTTTGCTTTA+AGG - chr4.2:12698063-12698082 None:intergenic 35.0%
! TCAAGATCAAAAAGCACGTA+AGG - chr4.2:12698613-12698632 None:intergenic 35.0%
! TCAGATAACCCTTTTATCAG+TGG + chr4.2:12698145-12698164 MS.gene08767:intron 35.0%
! TTGCGATTCTAAAGAAAAGG+AGG + chr4.2:12697204-12697223 MS.gene08767:CDS 35.0%
!! AAATGGTGAGTTGATGGTTA+CGG + chr4.2:12697057-12697076 MS.gene08767:intron 35.0%
!! CCCACATCTGTTACTTATTT+TGG + chr4.2:12699272-12699291 MS.gene08767:intron 35.0%
!! GATTATAAAGGGCATTGTTG+TGG - chr4.2:12699158-12699177 None:intergenic 35.0%
!! GTTATTTTCCTTCATAAGGG+AGG + chr4.2:12698288-12698307 MS.gene08767:intron 35.0%
!! TTGGTGCTAAATATGCTGTT+AGG + chr4.2:12698444-12698463 MS.gene08767:intron 35.0%
!!! GAGCTTCTCTTTTTTGAAAG+CGG - chr4.2:12699508-12699527 None:intergenic 35.0%
AAAACTACTGACGCTGAAAG+TGG + chr4.2:12699398-12699417 MS.gene08767:CDS 40.0%
AAACTACTGACGCTGAAAGT+GGG + chr4.2:12699399-12699418 MS.gene08767:CDS 40.0%
AAATCAACTTCTCCGTCTTC+TGG - chr4.2:12697028-12697047 None:intergenic 40.0%
AAGATGTTAATTAGGGGGGT+TGG + chr4.2:12699681-12699700 MS.gene08767:intron 40.0%
AATATGCTGTTAGGATGTGG+AGG + chr4.2:12698453-12698472 MS.gene08767:intron 40.0%
AGATGTTAATTAGGGGGGTT+GGG + chr4.2:12699682-12699701 MS.gene08767:intron 40.0%
ATGTCTACATGCTCACTGAT+AGG - chr4.2:12697756-12697775 None:intergenic 40.0%
CTGAAAACATTATTCCGCCA+AGG + chr4.2:12698945-12698964 MS.gene08767:intron 40.0%
GAATACCATCAAAGTAGACC+AGG + chr4.2:12697951-12697970 MS.gene08767:CDS 40.0%
GCGTGGCAACTATTGTAAAT+TGG - chr4.2:12697639-12697658 None:intergenic 40.0%
GCTGTGTTAGTCATATAAGC+AGG + chr4.2:12699797-12699816 MS.gene08767:intron 40.0%
GTTAGTTGAGCTGAGATAGT+TGG - chr4.2:12698846-12698865 None:intergenic 40.0%
TGCTAATGGGGTATGTTAGT+TGG + chr4.2:12698425-12698444 MS.gene08767:intron 40.0%
TGGAAGAAACATGGCATGTT+GGG - chr4.2:12698826-12698845 None:intergenic 40.0%
TGTATCACAGATTGGAACCT+TGG - chr4.2:12698965-12698984 None:intergenic 40.0%
TGTTTCAGTGGATCCTGAAA+TGG + chr4.2:12696919-12696938 MS.gene08767:intron 40.0%
TTGGAAGAAACATGGCATGT+TGG - chr4.2:12698827-12698846 None:intergenic 40.0%
TTGTACACAGTATATACGCC+AGG - chr4.2:12696810-12696829 None:intergenic 40.0%
! AGAGCAAAATGGTGAGTTGA+TGG + chr4.2:12697051-12697070 MS.gene08767:intron 40.0%
! CTGATTTAAGACAGCGTCTA+GGG - chr4.2:12700050-12700069 None:intergenic 40.0%
! TAGTTTTCTTCCTACCCTTG+TGG - chr4.2:12699385-12699404 None:intergenic 40.0%
! TCTTTCAACCTGTTGACTAC+TGG + chr4.2:12697791-12697810 MS.gene08767:intron 40.0%
! TGATTTAAGACAGCGTCTAG+GGG - chr4.2:12700049-12700068 None:intergenic 40.0%
! TGTTTTGCTTGCAGAGCTAA+TGG + chr4.2:12700123-12700142 MS.gene08767:intron 40.0%
!! AATGGTGAGTTGATGGTTAC+GGG + chr4.2:12697058-12697077 MS.gene08767:intron 40.0%
!! ATTATGAAGGGCATTGTCGT+GGG - chr4.2:12699019-12699038 None:intergenic 40.0%
ACCACATTCCAGTAGTCAAC+AGG - chr4.2:12697802-12697821 None:intergenic 45.0%
ACTGCAGAGCAAATTTGAGG+AGG + chr4.2:12700147-12700166 MS.gene08767:CDS 45.0%
AGCATCAAGTGCTAAGCACA+TGG - chr4.2:12698379-12698398 None:intergenic 45.0%
ATCACAGATTGGAACCTTGG+CGG - chr4.2:12698962-12698981 None:intergenic 45.0%
ATGCTCACTGATAGGCAGTA+GGG - chr4.2:12697748-12697767 None:intergenic 45.0%
ATGTTAATTAGGGGGGTTGG+GGG + chr4.2:12699684-12699703 MS.gene08767:intron 45.0%
CGAGGCTCATTCATGCTTTA+CGG + chr4.2:12700003-12700022 MS.gene08767:intron 45.0%
GAAACATGGCATGTTGGGTA+AGG - chr4.2:12698821-12698840 None:intergenic 45.0%
GATGTTAATTAGGGGGGTTG+GGG + chr4.2:12699683-12699702 MS.gene08767:intron 45.0%
GGAACTGCAGAGCAAATTTG+AGG + chr4.2:12700144-12700163 MS.gene08767:CDS 45.0%
GGAATACTCAAACCACAGAG+TGG + chr4.2:12697922-12697941 MS.gene08767:intron 45.0%
GGAGATGATGACTGCTCAAA+TGG + chr4.2:12697484-12697503 MS.gene08767:CDS 45.0%
GTATTCCATGATCCACTCTG+TGG - chr4.2:12697937-12697956 None:intergenic 45.0%
TAGATGTCCATCAGGACTGT+TGG - chr4.2:12698891-12698910 None:intergenic 45.0%
TCAAACCACAGAGTGGATCA+TGG + chr4.2:12697929-12697948 MS.gene08767:intron 45.0%
! AAAAAAAGGCATACGGACCG+GGG + chr4.2:12696600-12696619 MS.gene08767:CDS 45.0%
! ACCTGTTGACTACTGGAATG+TGG + chr4.2:12697798-12697817 MS.gene08767:intron 45.0%
! GAAAAAAAGGCATACGGACC+GGG + chr4.2:12696599-12696618 MS.gene08767:CDS 45.0%
! GCTGATTTAAGACAGCGTCT+AGG - chr4.2:12700051-12700070 None:intergenic 45.0%
! GGAAAAAAAGGCATACGGAC+CGG + chr4.2:12696598-12696617 MS.gene08767:CDS 45.0%
!! CATTGTTGTGGGAGAGTACT+AGG - chr4.2:12699146-12699165 None:intergenic 45.0%
!! GATTATGAAGGGCATTGTCG+TGG - chr4.2:12699020-12699039 None:intergenic 45.0%
!!! ATAAAATCATATAATTTTTA+AGG - chr4.2:12699982-12700001 None:intergenic 5.0%
AAAGAAGCCCTTGCTGCAGA+AGG + chr4.2:12699338-12699357 MS.gene08767:CDS 50.0%
ACATGGCATGTTGGGTAAGG+AGG - chr4.2:12698818-12698837 None:intergenic 50.0%
ACTAGGTCTTTCGTCCTGCT+TGG - chr4.2:12699129-12699148 None:intergenic 50.0%
ACTTCTCCGTCTTCTGGTGT+TGG - chr4.2:12697022-12697041 None:intergenic 50.0%
AGTAGGGTGGATGTTGGCAA+AGG - chr4.2:12697732-12697751 None:intergenic 50.0%
ATAGGCAGTAGGGTGGATGT+TGG - chr4.2:12697738-12697757 None:intergenic 50.0%
ATCCTGACCAACAGTCCTGA+TGG + chr4.2:12698881-12698900 MS.gene08767:intron 50.0%
CATGCTCACTGATAGGCAGT+AGG - chr4.2:12697749-12697768 None:intergenic 50.0%
CCAACCCTGGTCTACTTTGA+TGG - chr4.2:12697959-12697978 None:intergenic 50.0%
CCATCAAAGTAGACCAGGGT+TGG + chr4.2:12697956-12697975 MS.gene08767:CDS 50.0%
CCTTCATAAGGGAGGGCTAA+GGG + chr4.2:12698296-12698315 MS.gene08767:intron 50.0%
GCTGAAAGTGGGATTGCTGT+GGG + chr4.2:12699410-12699429 MS.gene08767:CDS 50.0%
GGAAGACCAACACCAGAAGA+CGG + chr4.2:12697013-12697032 MS.gene08767:CDS 50.0%
GTCTAGGGGTGAGGGAAAAT+GGG - chr4.2:12700035-12700054 None:intergenic 50.0%
TCAAAGTAGACCAGGGTTGG+AGG + chr4.2:12697959-12697978 MS.gene08767:CDS 50.0%
TCCTTCATAAGGGAGGGCTA+AGG + chr4.2:12698295-12698314 MS.gene08767:intron 50.0%
TCTAGGGGTGAGGGAAAATG+GGG - chr4.2:12700034-12700053 None:intergenic 50.0%
TGAGCAGTCATCATCTCCAG+AGG - chr4.2:12697482-12697501 None:intergenic 50.0%
TGCAACAGTTGAGAGCTGCT+AGG + chr4.2:12700182-12700201 MS.gene08767:CDS 50.0%
TGTTGCAAAACCTCCAACCC+TGG - chr4.2:12697972-12697991 None:intergenic 50.0%
!! CATTGTCGTGGGAGAGTACT+AGG - chr4.2:12699008-12699027 None:intergenic 50.0%
!! TGAGTTGATGGTTACGGGTG+TGG + chr4.2:12697063-12697082 MS.gene08767:intron 50.0%
AAGACAGCGTCTAGGGGTGA+GGG - chr4.2:12700043-12700062 None:intergenic 55.0%
AAGTGGGATTGCTGTGGGCT+CGG + chr4.2:12699415-12699434 MS.gene08767:CDS 55.0%
ACGGTGGTTCAGCACCACAA+GGG + chr4.2:12699368-12699387 MS.gene08767:CDS 55.0%
CCATCCTCCTTCTGCAGCAA+GGG - chr4.2:12699348-12699367 None:intergenic 55.0%
CCCTTAGCCCTCCCTTATGA+AGG - chr4.2:12698299-12698318 None:intergenic 55.0%
CGCTGAAAGTGGGATTGCTG+TGG + chr4.2:12699409-12699428 MS.gene08767:CDS 55.0%
CGTCTAGGGGTGAGGGAAAA+TGG - chr4.2:12700036-12700055 None:intergenic 55.0%
CTCACTGATAGGCAGTAGGG+TGG - chr4.2:12697745-12697764 None:intergenic 55.0%
GTCCATCAGGACTGTTGGTC+AGG - chr4.2:12698886-12698905 None:intergenic 55.0%
TAAGACAGCGTCTAGGGGTG+AGG - chr4.2:12700044-12700063 None:intergenic 55.0%
TCCATCCTCCTTCTGCAGCA+AGG - chr4.2:12699349-12699368 None:intergenic 55.0%
TGCTGCAGAAGGAGGATGGA+CGG + chr4.2:12699349-12699368 MS.gene08767:CDS 55.0%
TGGTTCAGCACCACAAGGGT+AGG + chr4.2:12699372-12699391 MS.gene08767:CDS 55.0%
CCCTTGCTGCAGAAGGAGGA+TGG + chr4.2:12699345-12699364 MS.gene08767:CDS 60.0%
GAAGCCCTTGCTGCAGAAGG+AGG + chr4.2:12699341-12699360 MS.gene08767:CDS 60.0%
GACGGTGGTTCAGCACCACA+AGG + chr4.2:12699367-12699386 MS.gene08767:CDS 60.0%
TGCAGAAGGAGGATGGACGG+TGG + chr4.2:12699352-12699371 MS.gene08767:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 12696580 12700222 12696580 ID=MS.gene08767
chr4.2 mRNA 12696580 12700222 12696580 ID=MS.gene08767.t1;Parent=MS.gene08767
chr4.2 exon 12696580 12696694 12696580 ID=MS.gene08767.t1.exon1;Parent=MS.gene08767.t1
chr4.2 CDS 12696580 12696694 12696580 ID=cds.MS.gene08767.t1;Parent=MS.gene08767.t1
chr4.2 exon 12696927 12697061 12696927 ID=MS.gene08767.t1.exon2;Parent=MS.gene08767.t1
chr4.2 CDS 12696927 12697061 12696927 ID=cds.MS.gene08767.t1;Parent=MS.gene08767.t1
chr4.2 exon 12697188 12697280 12697188 ID=MS.gene08767.t1.exon3;Parent=MS.gene08767.t1
chr4.2 CDS 12697188 12697280 12697188 ID=cds.MS.gene08767.t1;Parent=MS.gene08767.t1
chr4.2 exon 12697383 12697514 12697383 ID=MS.gene08767.t1.exon4;Parent=MS.gene08767.t1
chr4.2 CDS 12697383 12697514 12697383 ID=cds.MS.gene08767.t1;Parent=MS.gene08767.t1
chr4.2 exon 12697940 12698037 12697940 ID=MS.gene08767.t1.exon5;Parent=MS.gene08767.t1
chr4.2 CDS 12697940 12698037 12697940 ID=cds.MS.gene08767.t1;Parent=MS.gene08767.t1
chr4.2 exon 12699326 12699536 12699326 ID=MS.gene08767.t1.exon6;Parent=MS.gene08767.t1
chr4.2 CDS 12699326 12699536 12699326 ID=cds.MS.gene08767.t1;Parent=MS.gene08767.t1
chr4.2 exon 12700137 12700222 12700137 ID=MS.gene08767.t1.exon7;Parent=MS.gene08767.t1
chr4.2 CDS 12700137 12700222 12700137 ID=cds.MS.gene08767.t1;Parent=MS.gene08767.t1
Gene Sequence

>MS.gene08767

ATGATGAAAGTTAGTAAAGGAAAAAAAGGCATACGGACCGGGGAAAAGAAGAAAAAGATTAACATTGAACAAAATGCTGATGATGTTGAGACACATGTCAAGATGAACAATAATGGTATGTAAATATGTTTTAATTTTGTACGCCTCGCACATTCTCTGAAATAAATTGGTTGTTTCAGTAGTGGATCATAGAATGCAGCTTTTAAAGGGAAAAAAGATGAATGTAGCCTGGCGTATATACTGTGTACAAGATATTTTACTGTCTATAAGTATATAAATGTGTTATGTTTTTGTACGGGTCGCACTTTCTTGAACTTCAATCAACTGAAATAAATTGGTTGTTTCAGTGGATCCTGAAATGGAGATTATAAAGGGAAAAAAGGTGAAAGCTACTACTAGTCGAAAAAGGAAAAACAAGGACAAAAATCTAGTTGGAAGACCAACACCAGAAGACGGAGAAGTTGATTTAGAAGAGCAAAATGGTGAGTTGATGGTTACGGGTGTGGATTCTGTGAACAAAATATTTTTAACTAATCATGTTCATGATTTTGGCTTGTTCAAAAAAAACTAATCATGTTCATCTTACCTTTTTTCCTCAATGATATCAGATGGAGTAGTGGAACATTGCGATTCTAAAGAAAAGGAGGTTCAAGACTCCAAGAAGCCTAGAGATTCTAATATTGAAGCAGCTATCAAACCTTGTAATAAAAAGCACTTTCTGGTTGATGCTATTGTTGTATTGTGAAATATCATGCCTGAAGTCATACATTCATTTTTCTCATACAAGTTTTCTTTGTTTGTAGGTACGTCAAAGCAAGCTAAGAAAAAAAGAAGAAAGGAGGTTCCAAAATCATCAGAAAAGAGAGAACAGAATCATCAGGATGACATTCATATTATTTCCTCTGGAGATGATGACTGCTCAAATGGAATGAAAAGTATGAATTGCTTTTTTCTTCAGCGTTTTACTTTATATTTTCTTAAAAACAACAAATATCATGCACAAATTTAATGATTTTTTTTGTAATGTCGGCATAGTTACATATTGTGAGCTTATTTCCAATTTACAATAGTTGCCACGCATATACATACAGTAATTGATAAACTTTTCAAGATTCTCTAGGTTAACTTTCTTGTGCATATGTCTTTCATCCTTTGCCAACATCCACCCTACTGCCTATCAGTGAGCATGTAGACATATTGTTTACAATTATTCTTTCAACCTGTTGACTACTGGAATGTGGTGCACCCATATGCTATTGTATATTTAATATTTATTGTTATACATGGTATAGTTTCTGCATATTTGTATGATATTGTCATGCATTATTTAGTTTTTGACTGGGGAATACTCAAACCACAGAGTGGATCATGGAATACCATCAAAGTAGACCAGGGTTGGAGGTTTTGCAACATCAAATTGAAGAGTTTATATCTACTTACGAGGAAAAATTGGAAGAGGTAAAAATATTTTGAAAATCTTCCTTAAAGCAAAATAGAGGTTGGATGTTCTTGTCAGATATTGTCTCAAAAAATTTCTACTTAAGCAAATTTCTTCCTGATTATAGTCAGATAACCCTTTTATCAGTGGGGATAATCATGCCATGAATTTTATTATAAATTGAAATTAATTTGATCTTGTAAAATATTTATTTAGCATTTTCTTTTGTATAATTACTAGTTCTATGGCCTTGAAAAATAACATGTAAAAGTTATTTTCCTTCATAAGGGAGGGCTAAGGGCTTTAACATATGAGTCCAAGTTATTATAGTTGTATAAGGTTTAACGATGCTTTGGCTCCATGTGCTTAGCACTTGATGCTGTCTGCTTTTGACAAAGCTTTTCTGTTGCTAATGGGGTATGTTAGTTGGTGCTAAATATGCTGTTAGGATGTGGAGGATAATTCAGTTTGTATTTATAGGGTATCTAGATGAATTGATATGTATCTCACAGCTGTAAAGCCATAGACACAGTATTAGAAGTTCATTTTTGCTTTGATGTTCCTGCATGCGTATAATTTGAATATTCTTTTTCCTTACGTGCTTTTTGATCTTGATGTTTTTTGGCTTAGGCAGCATAAAAAGTGACTTTATCTGGTCATCATGTATACTTGTCATGACTAGAATATAACTCCTCAAGAAAGAGAGTAATTGATAGAAATATGGTATTTTATGAGTAAGAATAGGGAATCTCTCCCCTGATTGCAGAAGAATAATGCAAAATCATGAAGGTCTGCAACCTCCTTACCCAACATGCCATGTTTCTTCCAACTATCTCAGCTCAACTAACCTAACTAATTCAGAAATCCTGACCAACAGTCCTGATGGACATCTAACAATAGTCCCCCAAAATGTTCTCCTTGTATTTGCTGAAAACATTATTCCGCCAAGGTTCCAATCTGTGATACATTATTTAGCAGGACGAATGGCCTAGTACTCTCCCACGACAATGCCCTTCATAATCTCTCATCTCACACTCCAAACTAACAGACTTACTAACTCGCTTTGTGATACTCGAGTGTTTAATCTTCCATATTCAATATTCAGTATCCAAGCAGGACGAAAGACCTAGTACTCTCCCACAACAATGCCCTTTATAATCTCTCATCTCAAACCCCAAACTAAACGGCTTATTAATCCACTTTGTGATACTTAAGTGTTTAATTTTCCTTATTCAATATTCAGTTATGAATGAACCCACATCTGTTACTTATTTTGGTTTCCATGCAATTATTGTTCGGTCAATGCAGGAAAGAAAAGCAAAAGAAGCCCTTGCTGCAGAAGGAGGATGGACGGTGGTTCAGCACCACAAGGGTAGGAAGAAAACTACTGACGCTGAAAGTGGGATTGCTGTGGGCTCGGTTGCTCAAGCTGCTGCAGAAAATAAATTGGCCAAAAAGAAACAAACAGGAGTTGGTCAAGATTTCTACCGCTTTCAAAAAAGAGAAGCTCAGAGAAATGGTATGACTTGTTTTTCATAATGTTTTGCCATATATTCATATCGTAGATGATTTTTAACTGTTGTTGTTACAAAATATGTTTACTTCTGTTAAAACAAAAAGTCAATAATTAAATTTAAACGAACAGTTTTGGTTTAAATAATGGAAGATGTTAATTAGGGGGGTTGGGGGTTCCATCAAAATTTGCATTAGCATGCAACAGATCTTATAGTTGATGTTATTTGTGTTTCTTTTAGTTTAAGAAATATTAGGGTTATTGGTGCTGTGTTAGTCATATAAGCAGGTTCATTTGCCTTATCTTCTGTGATGTTTCTCACTTCCCTAATATCTTGGTTTCTATGATTCAAAACCCTTCTGCCAGTAAGTTAAGATTCACAAAAACACACTAGTTAATAATGTGTCTAGATTGTCATGAAATGATCGTTATCTTGTTGATTGGAACACCTTAAAAATTATATGATTTTATGCGAGGCTCATTCATGCTTTACGGCTTTACCCCATTTTCCCTCACCCCTAGACGCTGTCTTAAATCAGCACATGATCATTCAAAATTGTTTTTACGATGATCAAACTGAGATAAATATTCATGTTTTGCTTGCAGAGCTAATGGAACTGCAGAGCAAATTTGAGGAGGATAAAAAACGTCTGCAACAGTTGAGAGCTGCTAGGAAATTTAGACCTTATTAA

Protein sequence

>MS.gene08767.t1

MMKVSKGKKGIRTGEKKKKINIEQNADDVETHVKMNNNVDPEMEIIKGKKVKATTSRKRKNKDKNLVGRPTPEDGEVDLEEQNDGVVEHCDSKEKEVQDSKKPRDSNIEAAIKPCTSKQAKKKRRKEVPKSSEKREQNHQDDIHIISSGDDDCSNGMKKWIMEYHQSRPGLEVLQHQIEEFISTYEEKLEEERKAKEALAAEGGWTVVQHHKGRKKTTDAESGIAVGSVAQAAAENKLAKKKQTGVGQDFYRFQKREAQRNELMELQSKFEEDKKRLQQLRAARKFRPY