Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09125.t1 | RHN60649.1 | 85.9 | 695 | 77 | 4 | 98 | 778 | 86 | 773 | 0.00E+00 | 1154.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09125.t1 | Q42572 | 65.3 | 637 | 203 | 3 | 156 | 778 | 158 | 790 | 8.9e-243 | 841.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09125.t1 | G7JNA4 | 85.9 | 695 | 77 | 4 | 98 | 778 | 46 | 733 | 0.0e+00 | 1154.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21089 | MS.gene09125 | PPI |
| MS.gene87898 | MS.gene09125 | PPI |
| MS.gene056051 | MS.gene09125 | PPI |
| MS.gene09125 | MS.gene071456 | PPI |
| MS.gene55626 | MS.gene09125 | PPI |
| MS.gene005383 | MS.gene09125 | PPI |
| MS.gene82109 | MS.gene09125 | PPI |
| MS.gene90358 | MS.gene09125 | PPI |
| MS.gene04418 | MS.gene09125 | PPI |
| MS.gene79799 | MS.gene09125 | PPI |
| MS.gene05640 | MS.gene09125 | PPI |
| MS.gene90359 | MS.gene09125 | PPI |
| MS.gene09125 | MS.gene071460 | PPI |
| MS.gene08109 | MS.gene09125 | PPI |
| MS.gene066960 | MS.gene09125 | PPI |
| MS.gene20956 | MS.gene09125 | PPI |
| MS.gene04079 | MS.gene09125 | PPI |
| MS.gene47284 | MS.gene09125 | PPI |
| MS.gene49838 | MS.gene09125 | PPI |
| MS.gene005245 | MS.gene09125 | PPI |
| MS.gene042871 | MS.gene09125 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09125.t1 | MTR_4g057340 | 87.194 | 695 | 68 | 4 | 98 | 778 | 46 | 733 | 0.0 | 1226 |
| MS.gene09125.t1 | MTR_4g057345 | 82.209 | 697 | 106 | 3 | 96 | 778 | 85 | 777 | 0.0 | 1170 |
| MS.gene09125.t1 | MTR_8g468400 | 67.610 | 636 | 195 | 3 | 142 | 768 | 72 | 705 | 0.0 | 885 |
| MS.gene09125.t1 | MTR_7g082860 | 37.003 | 654 | 365 | 12 | 159 | 774 | 765 | 1409 | 2.99e-135 | 434 |
| MS.gene09125.t1 | MTR_7g082860 | 35.455 | 660 | 354 | 14 | 159 | 774 | 765 | 1396 | 2.37e-122 | 399 |
| MS.gene09125.t1 | MTR_7g082860 | 37.982 | 545 | 301 | 9 | 159 | 673 | 765 | 1302 | 3.75e-116 | 382 |
| MS.gene09125.t1 | MTR_7g082860 | 37.984 | 516 | 283 | 9 | 159 | 644 | 765 | 1273 | 1.28e-106 | 355 |
| MS.gene09125.t1 | MTR_7g082860 | 35.840 | 399 | 230 | 6 | 159 | 538 | 765 | 1156 | 2.51e-72 | 257 |
| MS.gene09125.t1 | MTR_2g038030 | 25.751 | 466 | 268 | 18 | 281 | 711 | 123 | 545 | 2.91e-29 | 125 |
| MS.gene09125.t1 | MTR_2g038030 | 25.751 | 466 | 268 | 18 | 281 | 711 | 123 | 545 | 2.94e-29 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09125.t1 | AT1G08130 | 61.648 | 704 | 240 | 5 | 99 | 778 | 93 | 790 | 0.0 | 891 |
| MS.gene09125.t1 | AT1G49250 | 55.637 | 683 | 252 | 6 | 111 | 778 | 11 | 657 | 0.0 | 724 |
| MS.gene09125.t1 | AT1G66730 | 36.794 | 655 | 370 | 13 | 156 | 772 | 748 | 1396 | 2.40e-127 | 413 |
| MS.gene09125.t1 | AT5G57160 | 24.587 | 484 | 287 | 21 | 266 | 711 | 105 | 548 | 3.49e-22 | 103 |
Find 159 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAACATCATTATATAAT+TGG | 0.198642 | 4.1:+40875042 | None:intergenic |
| TTTGATTTGTTGCACCTTAA+TGG | 0.216206 | 4.1:-40870317 | MS.gene09125:CDS |
| ATTGAGACAGATACATTTCT+TGG | 0.216627 | 4.1:-40871988 | MS.gene09125:intron |
| ATCCGAGTTCGGTTGTTTGC+TGG | 0.220406 | 4.1:-40874586 | MS.gene09125:CDS |
| GGAGTAAAATTACACTTCTT+TGG | 0.243294 | 4.1:+40872205 | None:intergenic |
| AAAATTGCGCCGGCGTATAA+AGG | 0.243932 | 4.1:-40874398 | MS.gene09125:CDS |
| TAGAGTTTATAACGGTTTCT+AGG | 0.296185 | 4.1:+40874768 | None:intergenic |
| TTCTTAGATTTGGTACCTAT+TGG | 0.302308 | 4.1:-40869024 | MS.gene09125:CDS |
| ACAGAAAATTTGTCCTTTCC+AGG | 0.303521 | 4.1:-40870516 | MS.gene09125:intron |
| ACATATTAAGTCTCAGTATA+AGG | 0.304378 | 4.1:-40874306 | MS.gene09125:CDS |
| AGCATGATGCTTTGACTATT+AGG | 0.317896 | 4.1:-40873747 | MS.gene09125:CDS |
| TCTTCATGAACGGTTTCTTT+AGG | 0.326229 | 4.1:+40874710 | None:intergenic |
| CACAATCAGTTGCAGCAAAA+AGG | 0.329925 | 4.1:+40872654 | None:intergenic |
| CCCTCTGCAGCTCGGTAGAC+AGG | 0.339280 | 4.1:+40868252 | None:intergenic |
| TATAAATGTCCGCAGGAATC+TGG | 0.341200 | 4.1:-40872719 | MS.gene09125:intron |
| AATTGGCGGGAAGATAGATT+TGG | 0.347850 | 4.1:+40875059 | None:intergenic |
| TTTAGGGGACTTCTTAGATT+TGG | 0.348652 | 4.1:-40869034 | MS.gene09125:CDS |
| TGAAGGTGGTGGTTTCTTCT+TGG | 0.350827 | 4.1:+40874849 | None:intergenic |
| CGGTGATGCTTCGATCATTA+AGG | 0.367543 | 4.1:-40874360 | MS.gene09125:CDS |
| TCAAATTCTAAATAAGTTCC+AGG | 0.368042 | 4.1:-40872134 | MS.gene09125:CDS |
| TAATGGCCACGATCTTCTTC+AGG | 0.369756 | 4.1:-40870300 | MS.gene09125:CDS |
| AGAGTGAGGGACCTTTGGTT+TGG | 0.373613 | 4.1:+40868587 | None:intergenic |
| ATTGGCGGGAAGATAGATTT+GGG | 0.381568 | 4.1:+40875060 | None:intergenic |
| GAGTGAGGGACCTTTGGTTT+GGG | 0.386644 | 4.1:+40868588 | None:intergenic |
| ATGTTATTGCTGCAGTTTCA+AGG | 0.391497 | 4.1:-40871905 | MS.gene09125:intron |
| TTCCAGACAAAATTGCGAAT+TGG | 0.396547 | 4.1:-40872533 | MS.gene09125:intron |
| GAAGAAGATCGTGGCCATTA+AGG | 0.398206 | 4.1:+40870303 | None:intergenic |
| GCAAACTCTCTTGGCTGCAT+TGG | 0.403967 | 4.1:-40872501 | MS.gene09125:CDS |
| GGCGTATAAAGGGTTAGAAT+TGG | 0.404818 | 4.1:-40874387 | MS.gene09125:CDS |
| GCATCATGCTTCCGCATCAT+AGG | 0.406559 | 4.1:+40873760 | None:intergenic |
| TCCGAGTTCGGTTGTTTGCT+GGG | 0.407250 | 4.1:-40874585 | MS.gene09125:CDS |
| ATATATAATCCGTTTGCTAC+AGG | 0.417845 | 4.1:-40872624 | MS.gene09125:intron |
| TTTGACAGCATAGGCCCAAC+TGG | 0.418815 | 4.1:+40872175 | None:intergenic |
| TTATGTCTTGTAGGATTGTA+TGG | 0.420971 | 4.1:-40868815 | MS.gene09125:intron |
| CGGGATAGTCGCTGAATTGA+AGG | 0.423338 | 4.1:-40874648 | MS.gene09125:CDS |
| TGGAACTTATTTAGAATTTG+AGG | 0.427355 | 4.1:+40872136 | None:intergenic |
| TCAGACGAAGAGGCATGTTC+AGG | 0.427930 | 4.1:+40868026 | None:intergenic |
| AAATTGCGCCGGCGTATAAA+GGG | 0.429840 | 4.1:-40874397 | MS.gene09125:CDS |
| CAGTTGTTTGATCGCTTTGA+GGG | 0.430932 | 4.1:+40869525 | None:intergenic |
| TTACTCCTGGCATTCCAGTT+GGG | 0.430985 | 4.1:-40872189 | MS.gene09125:CDS |
| TGTAGCAAAGAGGGACATAA+AGG | 0.431524 | 4.1:-40870360 | MS.gene09125:CDS |
| AATTGTTTCTGCACTCCTTA+CGG | 0.436971 | 4.1:-40872245 | MS.gene09125:CDS |
| CAAACTCTCTTGGCTGCATT+GGG | 0.436989 | 4.1:-40872500 | MS.gene09125:CDS |
| CAGATACATTTCTTGGAGAA+TGG | 0.437323 | 4.1:-40871981 | MS.gene09125:CDS |
| TTGTCGAAGGCGGAGGGTGG+TGG | 0.440778 | 4.1:+40874901 | None:intergenic |
| CACTCCTTACGGATGGTGTA+TGG | 0.441408 | 4.1:-40872234 | MS.gene09125:CDS |
| CCAGTTGTTTGATCGCTTTG+AGG | 0.442704 | 4.1:+40869524 | None:intergenic |
| GTACCTATTGGTGCTTTCCA+TGG | 0.447882 | 4.1:-40869012 | MS.gene09125:CDS |
| CACACCTGATGATCTTGTTC+CGG | 0.447987 | 4.1:-40874441 | MS.gene09125:CDS |
| TTGTGTGGGGATGAAGAAGG+GGG | 0.448029 | 4.1:+40874793 | None:intergenic |
| GCCGGTTTCTTCTTCAGCTC+CGG | 0.450255 | 4.1:+40874617 | None:intergenic |
| GGCGAATTTCGATCCGAGTT+CGG | 0.461619 | 4.1:-40874597 | MS.gene09125:CDS |
| TTTACTCCTGGCATTCCAGT+TGG | 0.462876 | 4.1:-40872190 | MS.gene09125:CDS |
| CGTTTCTTGGAAGATGATGA+AGG | 0.464014 | 4.1:+40874832 | None:intergenic |
| ACTCAATCACACCGGCCAAC+AGG | 0.464048 | 4.1:-40867858 | MS.gene09125:CDS |
| CTGACGACATTGTGCGGCGA+AGG | 0.468071 | 4.1:+40874926 | None:intergenic |
| TTTCAAAGTATTGTTAAGCT+AGG | 0.468125 | 4.1:-40868752 | MS.gene09125:intron |
| CGACCATGGAAAGCACCAAT+AGG | 0.468385 | 4.1:+40869009 | None:intergenic |
| ACACTTCATCTTCTTCCAAC+GGG | 0.468946 | 4.1:-40874667 | MS.gene09125:CDS |
| TTCGCAGAAAGATAAACAAC+CGG | 0.471458 | 4.1:+40874422 | None:intergenic |
| TTTCGATGTTGTTGTGGTTG+CGG | 0.473844 | 4.1:-40874267 | MS.gene09125:intron |
| TCGCTTTGAGGGTTCGTATG+TGG | 0.474008 | 4.1:+40869536 | None:intergenic |
| GGGCAAAGTAGATCCCAATA+AGG | 0.475808 | 4.1:-40868232 | MS.gene09125:CDS |
| GCGTATAAAGGGTTAGAATT+GGG | 0.480031 | 4.1:-40874386 | MS.gene09125:CDS |
| GGTAGACAGGGCTAATAGTC+AGG | 0.480377 | 4.1:+40868265 | None:intergenic |
| CCTCAAAGCGATCAAACAAC+TGG | 0.481179 | 4.1:-40869524 | MS.gene09125:CDS |
| AATCAATCAATCCTGATGTC+TGG | 0.482865 | 4.1:-40868470 | MS.gene09125:CDS |
| CATGAGTTTGTCGAAGGCGG+AGG | 0.491912 | 4.1:+40874894 | None:intergenic |
| ATAGGCCCAACTGGAATGCC+AGG | 0.495371 | 4.1:+40872184 | None:intergenic |
| GAGTGAAGAAGAAGATTCGA+GGG | 0.497254 | 4.1:+40874984 | None:intergenic |
| ACATGCCTCTTCGTCTGAGC+AGG | 0.499771 | 4.1:-40868021 | MS.gene09125:intron |
| AGAAATTCTGAACGGAACAC+TGG | 0.504080 | 4.1:-40871939 | MS.gene09125:CDS |
| GATTAGCTTACCTCTTCTAA+AGG | 0.505080 | 4.1:+40872422 | None:intergenic |
| AGGTGGTGGTTTCTTCTTGG+AGG | 0.505907 | 4.1:+40874852 | None:intergenic |
| GAACATCATTATATAATTGG+CGG | 0.506570 | 4.1:+40875045 | None:intergenic |
| CACATTTCATCTTATTGCAA+AGG | 0.508186 | 4.1:-40873713 | MS.gene09125:intron |
| TAGAATTTGAGGTACACTCT+TGG | 0.508267 | 4.1:+40872147 | None:intergenic |
| GTTGTTATTAGAGTTTATAA+CGG | 0.512576 | 4.1:+40874760 | None:intergenic |
| TTCATCGTCATCCTGTTGGC+CGG | 0.513892 | 4.1:+40867847 | None:intergenic |
| AGCAAACGGATTATATATAG+AGG | 0.513938 | 4.1:+40872629 | None:intergenic |
| CGCTTGCTGAGGCGTGTGGA+AGG | 0.513977 | 4.1:-40874337 | MS.gene09125:CDS |
| CCCTGTCTACCGAGCTGCAG+AGG | 0.514196 | 4.1:-40868253 | MS.gene09125:CDS |
| TCCAGATTCTTCCTCAAAAG+AGG | 0.515268 | 4.1:+40869981 | None:intergenic |
| TTTCAGGCATATTATAAATG+TGG | 0.517894 | 4.1:-40868495 | MS.gene09125:intron |
| ACAACCGGAACAAGATCATC+AGG | 0.518789 | 4.1:+40874437 | None:intergenic |
| CTAGCTTCAAACCAGACATC+AGG | 0.519537 | 4.1:+40868459 | None:intergenic |
| TCCGGAGCTGAAGAAGAAAC+CGG | 0.521503 | 4.1:-40874618 | MS.gene09125:CDS |
| AACACTTCATCTTCTTCCAA+CGG | 0.524596 | 4.1:-40874668 | MS.gene09125:CDS |
| AACATCATTATATAATTGGC+GGG | 0.524744 | 4.1:+40875046 | None:intergenic |
| CCTGTCTACCGAGCTGCAGA+GGG | 0.526945 | 4.1:-40868252 | MS.gene09125:CDS |
| GAAACTGCAGCAATAACATC+AGG | 0.528225 | 4.1:+40871909 | None:intergenic |
| ATAGAAGGTTTACCTCTCTA+CGG | 0.528755 | 4.1:+40870264 | None:intergenic |
| ATATGCTGAGCAAACTCTCT+TGG | 0.531309 | 4.1:-40872510 | MS.gene09125:CDS |
| ATTGGTGCTTTCCATGGTCG+TGG | 0.531774 | 4.1:-40869006 | MS.gene09125:CDS |
| AAAGGAGACTTAATTTCTAG+AGG | 0.532953 | 4.1:+40872440 | None:intergenic |
| GAGACTTAATTTCTAGAGGC+GGG | 0.535932 | 4.1:+40872444 | None:intergenic |
| AGAGTGAAGAAGAAGATTCG+AGG | 0.536046 | 4.1:+40874983 | None:intergenic |
| TTTGTGTGGGGATGAAGAAG+GGG | 0.539881 | 4.1:+40874792 | None:intergenic |
| CGGCGAAGGGTTGAAGAGAG+AGG | 0.541964 | 4.1:+40874940 | None:intergenic |
| AAAGGGTTAGAATTGGGAAT+CGG | 0.542421 | 4.1:-40874380 | MS.gene09125:CDS |
| TCCCAGCAAACAACCGAACT+CGG | 0.542601 | 4.1:+40874584 | None:intergenic |
| TTGGAAGATGATGAAGGTGG+TGG | 0.542860 | 4.1:+40874838 | None:intergenic |
| ATGCAACAAGTTCACAATCA+AGG | 0.546191 | 4.1:+40870552 | None:intergenic |
| CATCTTCATCGTCATCCTGT+TGG | 0.555157 | 4.1:+40867843 | None:intergenic |
| AATTAAGTCTCCTTTAGAAG+AGG | 0.555197 | 4.1:-40872432 | MS.gene09125:intron |
| GGCTATACTTTGCAGTTTAG+GGG | 0.555550 | 4.1:-40869049 | MS.gene09125:intron |
| GAATTGCAACCTGTAGCAAA+CGG | 0.557122 | 4.1:+40872615 | None:intergenic |
| ACAGCACAAATTACCTGGAA+AGG | 0.561955 | 4.1:+40870503 | None:intergenic |
| AACTGCATCAAATGATGTTG+AGG | 0.562512 | 4.1:-40869938 | MS.gene09125:CDS |
| GAAATTCTGAACGGAACACT+GGG | 0.564289 | 4.1:-40871938 | MS.gene09125:CDS |
| TGGTGGTTTCTTCTTGGAGG+CGG | 0.565108 | 4.1:+40874855 | None:intergenic |
| CCTCTGCAGCTCGGTAGACA+GGG | 0.566603 | 4.1:+40868253 | None:intergenic |
| TGATGCTTTGACTATTAGGA+AGG | 0.566610 | 4.1:-40873743 | MS.gene09125:CDS |
| CATGGTCGTGGTAAACGCAC+AGG | 0.567033 | 4.1:-40868994 | MS.gene09125:intron |
| GGCGAAGGGTTGAAGAGAGA+GGG | 0.567862 | 4.1:+40874941 | None:intergenic |
| TGACGACATTGTGCGGCGAA+GGG | 0.568018 | 4.1:+40874927 | None:intergenic |
| GCTCGATGGATCTTCATGAA+CGG | 0.568384 | 4.1:+40874700 | None:intergenic |
| GTTTCTGCACTCCTTACGGA+TGG | 0.569101 | 4.1:-40872241 | MS.gene09125:CDS |
| GCGAAGGGTTGAAGAGAGAG+GGG | 0.570918 | 4.1:+40874942 | None:intergenic |
| ATACGACGGAGAGCGTGCTC+AGG | 0.572360 | 4.1:-40872086 | MS.gene09125:intron |
| ACATTTCTTGGAGAATGGCT+CGG | 0.574669 | 4.1:-40871976 | MS.gene09125:CDS |
| TCGACAAAGCTATTGATGCA+AGG | 0.577282 | 4.1:-40869900 | MS.gene09125:intron |
| CAATTCAGCGACTATCCCGT+TGG | 0.580013 | 4.1:+40874652 | None:intergenic |
| TGGGAATCACTTTAGAGCGA+AGG | 0.581370 | 4.1:+40868607 | None:intergenic |
| GGGAAGATAGATTTGGGGCA+TGG | 0.586003 | 4.1:+40875066 | None:intergenic |
| AATCACTTTAGAGCGAAGGC+TGG | 0.586503 | 4.1:+40868611 | None:intergenic |
| GGTTTCTTTAGGTTCTTGAA+CGG | 0.586537 | 4.1:+40874721 | None:intergenic |
| AATTCTAACCCTTTATACGC+CGG | 0.588190 | 4.1:+40874389 | None:intergenic |
| TTCTGCGAATAAAATTGCGC+CGG | 0.591417 | 4.1:-40874408 | MS.gene09125:CDS |
| CAGTTGATGTCGCAAACTGA+AGG | 0.591656 | 4.1:+40869956 | None:intergenic |
| CTACTTTGCCCTCTGCAGCT+CGG | 0.591913 | 4.1:+40868244 | None:intergenic |
| GATCATTAAGGCGCTTGCTG+AGG | 0.595381 | 4.1:-40874348 | MS.gene09125:CDS |
| GGAGACTTAATTTCTAGAGG+CGG | 0.598289 | 4.1:+40872443 | None:intergenic |
| CAAATTCTAAATAAGTTCCA+GGG | 0.605370 | 4.1:-40872133 | MS.gene09125:CDS |
| GTTTCCATACACCATCCGTA+AGG | 0.605466 | 4.1:+40872230 | None:intergenic |
| AAGGCGCTTGCTGAGGCGTG+TGG | 0.616663 | 4.1:-40874341 | MS.gene09125:CDS |
| AGTTTGTCGAAGGCGGAGGG+TGG | 0.619661 | 4.1:+40874898 | None:intergenic |
| ATGAGTTTGTCGAAGGCGGA+GGG | 0.621134 | 4.1:+40874895 | None:intergenic |
| GTCGGACATGAGTTTGTCGA+AGG | 0.626218 | 4.1:+40874888 | None:intergenic |
| GGACATGAGTTTGTCGAAGG+CGG | 0.628897 | 4.1:+40874891 | None:intergenic |
| ATTTACCTGCTCAGACGAAG+AGG | 0.629114 | 4.1:+40868016 | None:intergenic |
| GAACTCGGATCGAAATTCGC+CGG | 0.629211 | 4.1:+40874599 | None:intergenic |
| AAACCTTAAAATCCGTAGAG+AGG | 0.630636 | 4.1:-40870276 | MS.gene09125:intron |
| GGAGGCGGCAGAGCGTGCGT+CGG | 0.632501 | 4.1:+40874870 | None:intergenic |
| GATTTGATTAGCAAAGAGAG+TGG | 0.633149 | 4.1:-40874518 | MS.gene09125:CDS |
| GTGTTGCGGATCTTGCTCGA+TGG | 0.634086 | 4.1:+40874686 | None:intergenic |
| TAAAGTGATTCCCAAACCAA+AGG | 0.638299 | 4.1:-40868598 | MS.gene09125:intron |
| TTGGCGGGAAGATAGATTTG+GGG | 0.639677 | 4.1:+40875061 | None:intergenic |
| TGGAAGAAGATGAAGTGTTG+CGG | 0.645782 | 4.1:+40874672 | None:intergenic |
| CACACGTAAACTCTACACCC+TGG | 0.650776 | 4.1:+40872116 | None:intergenic |
| CTGTGCGTTTACCACGACCA+TGG | 0.653586 | 4.1:+40868995 | None:intergenic |
| CGGAACAAGATCATCAGGTG+TGG | 0.658948 | 4.1:+40874442 | None:intergenic |
| TTTACAGCAGAAATTCTGAA+CGG | 0.661104 | 4.1:-40871947 | MS.gene09125:CDS |
| GTGGTTCTGACGACATTGTG+CGG | 0.665541 | 4.1:+40874920 | None:intergenic |
| TGTCTGGTTTGAAGCTAGTG+AGG | 0.673944 | 4.1:-40868454 | MS.gene09125:intron |
| CGAAGGGTTGAAGAGAGAGG+GGG | 0.697773 | 4.1:+40874943 | None:intergenic |
| GTTCTTCACAGCCTATGATG+CGG | 0.707025 | 4.1:-40873771 | MS.gene09125:intron |
| ACGTGTGAGTGCAAATACGA+CGG | 0.735681 | 4.1:-40872100 | MS.gene09125:CDS |
| TTCTTGGAAGATGATGAAGG+TGG | 0.764510 | 4.1:+40874835 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 40867838 | 40875086 | 40867838 | ID=MS.gene09125 |
| chr4.1 | mRNA | 40867838 | 40875086 | 40867838 | ID=MS.gene09125.t1;Parent=MS.gene09125 |
| chr4.1 | exon | 40874268 | 40875086 | 40874268 | ID=MS.gene09125.t1.exon1;Parent=MS.gene09125.t1 |
| chr4.1 | CDS | 40874268 | 40875086 | 40874268 | ID=cds.MS.gene09125.t1;Parent=MS.gene09125.t1 |
| chr4.1 | exon | 40873714 | 40873782 | 40873714 | ID=MS.gene09125.t1.exon2;Parent=MS.gene09125.t1 |
| chr4.1 | CDS | 40873714 | 40873782 | 40873714 | ID=cds.MS.gene09125.t1;Parent=MS.gene09125.t1 |
| chr4.1 | exon | 40872625 | 40872726 | 40872625 | ID=MS.gene09125.t1.exon3;Parent=MS.gene09125.t1 |
| chr4.1 | CDS | 40872625 | 40872726 | 40872625 | ID=cds.MS.gene09125.t1;Parent=MS.gene09125.t1 |
| chr4.1 | exon | 40872433 | 40872549 | 40872433 | ID=MS.gene09125.t1.exon4;Parent=MS.gene09125.t1 |
| chr4.1 | CDS | 40872433 | 40872549 | 40872433 | ID=cds.MS.gene09125.t1;Parent=MS.gene09125.t1 |
| chr4.1 | exon | 40872087 | 40872317 | 40872087 | ID=MS.gene09125.t1.exon5;Parent=MS.gene09125.t1 |
| chr4.1 | CDS | 40872087 | 40872317 | 40872087 | ID=cds.MS.gene09125.t1;Parent=MS.gene09125.t1 |
| chr4.1 | exon | 40871906 | 40872000 | 40871906 | ID=MS.gene09125.t1.exon6;Parent=MS.gene09125.t1 |
| chr4.1 | CDS | 40871906 | 40872000 | 40871906 | ID=cds.MS.gene09125.t1;Parent=MS.gene09125.t1 |
| chr4.1 | exon | 40870517 | 40870604 | 40870517 | ID=MS.gene09125.t1.exon7;Parent=MS.gene09125.t1 |
| chr4.1 | CDS | 40870517 | 40870604 | 40870517 | ID=cds.MS.gene09125.t1;Parent=MS.gene09125.t1 |
| chr4.1 | exon | 40870277 | 40870408 | 40870277 | ID=MS.gene09125.t1.exon8;Parent=MS.gene09125.t1 |
| chr4.1 | CDS | 40870277 | 40870408 | 40870277 | ID=cds.MS.gene09125.t1;Parent=MS.gene09125.t1 |
| chr4.1 | exon | 40869901 | 40870013 | 40869901 | ID=MS.gene09125.t1.exon9;Parent=MS.gene09125.t1 |
| chr4.1 | CDS | 40869901 | 40870013 | 40869901 | ID=cds.MS.gene09125.t1;Parent=MS.gene09125.t1 |
| chr4.1 | exon | 40869495 | 40869596 | 40869495 | ID=MS.gene09125.t1.exon10;Parent=MS.gene09125.t1 |
| chr4.1 | CDS | 40869495 | 40869596 | 40869495 | ID=cds.MS.gene09125.t1;Parent=MS.gene09125.t1 |
| chr4.1 | exon | 40868995 | 40869056 | 40868995 | ID=MS.gene09125.t1.exon11;Parent=MS.gene09125.t1 |
| chr4.1 | CDS | 40868995 | 40869056 | 40868995 | ID=cds.MS.gene09125.t1;Parent=MS.gene09125.t1 |
| chr4.1 | exon | 40868753 | 40868824 | 40868753 | ID=MS.gene09125.t1.exon12;Parent=MS.gene09125.t1 |
| chr4.1 | CDS | 40868753 | 40868824 | 40868753 | ID=cds.MS.gene09125.t1;Parent=MS.gene09125.t1 |
| chr4.1 | exon | 40868599 | 40868672 | 40868599 | ID=MS.gene09125.t1.exon13;Parent=MS.gene09125.t1 |
| chr4.1 | CDS | 40868599 | 40868672 | 40868599 | ID=cds.MS.gene09125.t1;Parent=MS.gene09125.t1 |
| chr4.1 | exon | 40868455 | 40868511 | 40868455 | ID=MS.gene09125.t1.exon14;Parent=MS.gene09125.t1 |
| chr4.1 | CDS | 40868455 | 40868511 | 40868455 | ID=cds.MS.gene09125.t1;Parent=MS.gene09125.t1 |
| chr4.1 | exon | 40868220 | 40868310 | 40868220 | ID=MS.gene09125.t1.exon15;Parent=MS.gene09125.t1 |
| chr4.1 | CDS | 40868220 | 40868310 | 40868220 | ID=cds.MS.gene09125.t1;Parent=MS.gene09125.t1 |
| chr4.1 | exon | 40868022 | 40868065 | 40868022 | ID=MS.gene09125.t1.exon16;Parent=MS.gene09125.t1 |
| chr4.1 | CDS | 40868022 | 40868065 | 40868022 | ID=cds.MS.gene09125.t1;Parent=MS.gene09125.t1 |
| chr4.1 | exon | 40867838 | 40867906 | 40867838 | ID=MS.gene09125.t1.exon17;Parent=MS.gene09125.t1 |
| chr4.1 | CDS | 40867838 | 40867906 | 40867838 | ID=cds.MS.gene09125.t1;Parent=MS.gene09125.t1 |
| Gene Sequence |
| Protein sequence |
