AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09626

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09626.t1 MTR_5g015020 98.129 481 8 1 1 480 1 481 0.0 985
MS.gene09626.t1 MTR_4g097540 82.988 482 68 5 1 479 1 471 0.0 830
MS.gene09626.t1 MTR_3g103550 70.534 431 121 4 3 432 1 426 0.0 652
MS.gene09626.t1 MTR_6g091760 61.343 432 158 5 4 435 14 436 0.0 558
MS.gene09626.t1 MTR_8g101750 60.046 433 156 6 4 435 12 428 0.0 539
MS.gene09626.t1 MTR_8g098930 54.241 448 198 5 2 449 10 450 0.0 535
MS.gene09626.t1 MTR_8g028600 53.811 433 191 3 2 434 9 432 2.74e-178 508
MS.gene09626.t1 MTR_7g079080 52.778 432 196 3 2 433 9 432 9.32e-176 502
MS.gene09626.t1 MTR_8g101820 55.530 434 161 8 4 435 12 415 5.79e-171 488
MS.gene09626.t1 MTR_6g463260 44.316 431 230 5 4 433 104 525 1.41e-141 417
MS.gene09626.t1 MTR_7g079080 52.836 335 150 3 99 433 1 327 1.66e-132 388
MS.gene09626.t1 MTR_5g011400 40.821 414 236 3 16 429 84 488 1.75e-121 364
MS.gene09626.t1 MTR_2g090730 89.247 93 6 1 57 149 12 100 1.33e-52 176
MS.gene09626.t1 MTR_5g033230 26.733 202 134 7 79 276 100 291 6.45e-15 77.4
MS.gene09626.t1 MTR_5g033230 26.733 202 134 7 79 276 100 291 7.60e-15 77.0
MS.gene09626.t1 MTR_8g023140 23.599 339 235 11 112 432 182 514 3.97e-13 72.0
MS.gene09626.t1 MTR_4g011820 22.507 351 228 12 87 430 69 382 5.57e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09626.t1 AT4G37770 71.726 481 123 6 1 480 1 469 0.0 722
MS.gene09626.t1 AT3G49700 72.708 480 121 6 1 480 1 470 0.0 713
MS.gene09626.t1 AT5G65800 71.875 480 125 5 1 480 1 470 0.0 707
MS.gene09626.t1 AT2G22810 71.250 480 132 5 1 480 1 474 0.0 699
MS.gene09626.t1 AT4G08040 63.539 469 155 5 3 471 1 453 0.0 623
MS.gene09626.t1 AT4G26200 59.397 431 167 4 4 433 18 441 0.0 528
MS.gene09626.t1 AT1G01480 54.233 437 193 5 3 438 11 441 2.74e-180 514
MS.gene09626.t1 AT3G61510 53.580 433 190 5 2 434 9 430 1.65e-179 512
MS.gene09626.t1 AT4G11280 53.687 434 193 4 1 434 12 437 1.33e-174 500
MS.gene09626.t1 AT1G01480 55.718 341 144 5 99 438 1 335 5.25e-142 413
MS.gene09626.t1 AT5G51690 42.290 428 237 4 4 430 69 487 2.55e-131 389
MS.gene09626.t1 AT1G62960 42.558 430 230 9 4 430 132 547 5.18e-124 373
MS.gene09626.t1 AT5G51690 41.995 381 204 4 50 430 1 364 3.50e-114 341
MS.gene09626.t1 AT1G70580 23.864 352 229 15 24 348 35 374 3.07e-17 84.7
MS.gene09626.t1 AT1G70580 23.864 352 229 15 24 348 35 374 3.07e-17 84.7
MS.gene09626.t1 AT1G70580 23.864 352 229 15 24 348 35 374 3.07e-17 84.7
MS.gene09626.t1 AT1G70580 23.864 352 229 15 24 348 35 374 3.07e-17 84.7
MS.gene09626.t1 AT1G23310 25.514 243 163 8 24 253 35 272 1.76e-16 82.0
MS.gene09626.t1 AT1G23310 27.119 177 123 5 79 253 100 272 2.95e-16 81.6
MS.gene09626.t1 AT1G72330 26.012 346 222 15 110 432 196 530 1.35e-14 76.6
MS.gene09626.t1 AT1G17290 22.043 372 268 11 77 432 168 533 1.04e-13 73.9
MS.gene09626.t1 AT1G72330 30.303 132 89 3 110 240 196 325 1.76e-13 72.8
MS.gene09626.t1 AT1G72330 24.791 359 223 15 110 432 196 543 2.30e-12 69.7
MS.gene09626.t1 AT1G80360 23.380 355 219 14 87 430 69 381 6.05e-12 67.8
MS.gene09626.t1 AT1G80360 23.380 355 219 14 87 430 69 381 6.05e-12 67.8
MS.gene09626.t1 AT1G80360 23.380 355 219 14 87 430 69 381 6.05e-12 67.8
MS.gene09626.t1 AT1G80360 23.380 355 219 14 87 430 69 381 6.05e-12 67.8
MS.gene09626.t1 AT4G28420 22.841 359 232 13 87 432 103 429 6.28e-12 67.8
MS.gene09626.t1 AT4G23600 23.380 355 235 12 87 432 78 404 1.39e-11 66.6

Find 95 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAGACACCTTTGACTTTA+AGG 0.051253 5.2:+6940295 None:intergenic
ACTGCACCCTTCACCATTAA+TGG 0.203371 5.2:+6939555 None:intergenic
CTTAGCTATGAAAAGGTTAA+AGG 0.260676 5.2:-6939593 MS.gene09626:CDS
ACTACGTACCCTGGGTAATA+AGG 0.296823 5.2:+6940557 None:intergenic
TTTGTTGCAAACTCCATTAA+TGG 0.303571 5.2:-6939568 MS.gene09626:CDS
ACCTGGCAAACCCAAGTCTT+TGG 0.314092 5.2:+6940038 None:intergenic
TAAGATCATTTCTTTCCTTA+AGG 0.335369 5.2:+6940112 None:intergenic
GAAAGCATTGGTAGATTTCA+TGG 0.343370 5.2:-6940708 MS.gene09626:CDS
CGAAGAAATCTATTTCCAAT+TGG 0.345373 5.2:-6939489 MS.gene09626:CDS
CGTTTGAATCCAGCTACATC+TGG 0.348486 5.2:+6940797 None:intergenic
AAATACATTTGAAGCTGAAA+TGG 0.350097 5.2:-6939737 MS.gene09626:CDS
AATGGGCCTTGCAGAGAATC+AGG 0.355872 5.2:-6941221 MS.gene09626:intron
AGAGACCTAAAATGGAGAAC+TGG 0.364057 5.2:-6940414 MS.gene09626:CDS
CAAGATTCTTCATATTTCCT+AGG 0.370017 5.2:-6941304 MS.gene09626:CDS
GCAACGAAAATGTCGAGTTT+TGG 0.378850 5.2:-6939967 MS.gene09626:CDS
TCATGTCATTGCACCGAACC+TGG 0.380869 5.2:-6939661 MS.gene09626:CDS
CCCATTTGAATAATTCCCTT+GGG 0.387982 5.2:+6941238 None:intergenic
GCAAAGCCGATTCTGTGATT+TGG 0.393738 5.2:+6940349 None:intergenic
GAAGAAATCTATTTCCAATT+GGG 0.406948 5.2:-6939488 MS.gene09626:CDS
CAAATGTATTTGAATTAAGA+AGG 0.409557 5.2:+6939749 None:intergenic
AGAAGATATTATTCGATGTT+CGG 0.411380 5.2:-6939705 MS.gene09626:CDS
TCCAAAGACTTGGGTTTGCC+AGG 0.411783 5.2:-6940039 MS.gene09626:CDS
GATTTGATAGAGACCTAAAA+TGG 0.416741 5.2:-6940422 MS.gene09626:CDS
TTTGAGCTTGTGCATTGTAT+TGG 0.416870 5.2:+6940378 None:intergenic
CTAGGAAATATGAAGAATCT+TGG 0.418153 5.2:+6941305 None:intergenic
TAAGGAAAGAAATGATCTTA+AGG 0.419177 5.2:-6940109 MS.gene09626:CDS
TTGAAGCTGAAATGGAACTA+TGG 0.421415 5.2:-6939729 MS.gene09626:CDS
CAGTGTCATGGAAATCCTTA+AGG 0.422050 5.2:-6940127 MS.gene09626:CDS
CCCCAAGGGAATTATTCAAA+TGG 0.429955 5.2:-6941239 MS.gene09626:CDS
CGTAAAACTTCTAGAAGCTT+GGG 0.433016 5.2:+6939510 None:intergenic
TCGTAAAACTTCTAGAAGCT+TGG 0.437659 5.2:+6939509 None:intergenic
GCTGTTAGAACAATGTGGTT+TGG 0.438391 5.2:+6940653 None:intergenic
ACCAATGCTTTCTTGAAAGA+AGG 0.439628 5.2:+6940719 None:intergenic
GTAGTGCCTAGTGGGTTTGA+TGG 0.441338 5.2:+6940264 None:intergenic
ATAAACGACATGAACTCTTT+CGG 0.450704 5.2:+6940068 None:intergenic
GCCCATTTGAATAATTCCCT+TGG 0.452199 5.2:+6941237 None:intergenic
AAGGTAGACCATGGTAGTCT+TGG 0.461144 5.2:+6940738 None:intergenic
CATTAAACTTAGCTATGAAA+AGG 0.483162 5.2:-6939600 MS.gene09626:CDS
GCTAAGAACCCAGATGTAGC+TGG 0.483190 5.2:-6940806 MS.gene09626:CDS
TCTCATATTCTTGCCACCCT+AGG 0.485179 5.2:+6941287 None:intergenic
TGTCTCAAAACAAATAATGC+TGG 0.496154 5.2:-6939799 MS.gene09626:CDS
TAACTTCCAAATCACAGAAT+CGG 0.496716 5.2:-6940355 MS.gene09626:CDS
AACACGAAACCACCCAGGTT+CGG 0.497469 5.2:+6939648 None:intergenic
GGTTTGCCAGGTTTCCGTGT+AGG 0.498693 5.2:-6940027 MS.gene09626:CDS
TTGACATTGTAGTGCCTAGT+GGG 0.500135 5.2:+6940256 None:intergenic
CCCAAGGGAATTATTCAAAT+GGG 0.502528 5.2:-6941238 MS.gene09626:CDS
AACCACATTGTTCTAACAGC+TGG 0.513432 5.2:-6940650 MS.gene09626:CDS
GAGTGTCTCATTTGCAGAAG+TGG 0.513434 5.2:+6940625 None:intergenic
AAGATTCTTCATATTTCCTA+GGG 0.523269 5.2:-6941303 MS.gene09626:CDS
ACCTTCTTTCAAGAAAGCAT+TGG 0.525726 5.2:-6940720 MS.gene09626:CDS
TTATAGTCTATCCAAAGACT+TGG 0.525935 5.2:-6940049 MS.gene09626:CDS
TTCCCACTCCTTATTACCCA+GGG 0.526414 5.2:-6940565 MS.gene09626:intron
CTTCCCACTCCTTATTACCC+AGG 0.527471 5.2:-6940566 MS.gene09626:CDS
ATAAGTGACGAAATTTACTC+AGG 0.531938 5.2:-6940177 MS.gene09626:CDS
AACAAGAACCTTAAAGTCAA+AGG 0.545404 5.2:-6940303 MS.gene09626:CDS
ATTCTTCATATTTCCTAGGG+TGG 0.549169 5.2:-6941300 MS.gene09626:CDS
GAGACCTAAAATGGAGAACT+GGG 0.550316 5.2:-6940413 MS.gene09626:CDS
TCCGAGTTTCATCAGTGTCA+TGG 0.550388 5.2:-6940139 MS.gene09626:CDS
GATTTCATGGCTGAGATTCG+AGG 0.551442 5.2:-6940695 MS.gene09626:CDS
ATAGCGCCTACACGGAAACC+TGG 0.551973 5.2:+6940021 None:intergenic
CATGTCATTGCACCGAACCT+GGG 0.557249 5.2:-6939660 MS.gene09626:CDS
TATAGTCTATCCAAAGACTT+GGG 0.560364 5.2:-6940048 MS.gene09626:CDS
GTTTGAATCCAGCTACATCT+GGG 0.563494 5.2:+6940798 None:intergenic
TATCTCCTCTCATCTATGCT+AGG 0.566553 5.2:-6939922 MS.gene09626:CDS
TCCATGACACTGATGAAACT+CGG 0.567201 5.2:+6940138 None:intergenic
TTTGACATTGTAGTGCCTAG+TGG 0.577255 5.2:+6940255 None:intergenic
CAGAATAGATAGCGCCTACA+CGG 0.579609 5.2:+6940013 None:intergenic
AGTTAACCTGATTCTCTGCA+AGG 0.590703 5.2:+6941215 None:intergenic
GTGCAATGACATGAGGCACC+AGG 0.592900 5.2:+6939670 None:intergenic
GCAAACTCCATTAATGGTGA+AGG 0.593150 5.2:-6939562 MS.gene09626:CDS
GTTCGGTTGAACATTTCACC+TGG 0.597060 5.2:-6939688 MS.gene09626:CDS
AAGCTTCTCCTTGTTCAGCA+AGG 0.599299 5.2:+6940594 None:intergenic
GTAGCTGGATTCAAACGTGA+TGG 0.600691 5.2:-6940791 MS.gene09626:CDS
AAAGCCACATGCAACTCTCA+TGG 0.602554 5.2:-6941328 MS.gene09626:CDS
TAAGTGACGAAATTTACTCA+GGG 0.606958 5.2:-6940176 MS.gene09626:CDS
TACCCTGGGTAATAAGGAGT+GGG 0.613428 5.2:+6940563 None:intergenic
CCATTTGAATAATTCCCTTG+GGG 0.613853 5.2:+6941239 None:intergenic
TGTCACCTAGCATAGATGAG+AGG 0.616320 5.2:+6939917 None:intergenic
TGAAAACGACATGGTCGTTG+CGG 0.625488 5.2:-6939992 MS.gene09626:CDS
CAAACTCCATTAATGGTGAA+GGG 0.626301 5.2:-6939561 MS.gene09626:CDS
GTACCCTGGGTAATAAGGAG+TGG 0.633094 5.2:+6940562 None:intergenic
GCTCTCTTCCAAGACTACCA+TGG 0.637227 5.2:-6940746 MS.gene09626:CDS
TGATGACGTTCAAAACCCCA+AGG 0.640678 5.2:-6941254 MS.gene09626:CDS
CTGGGTAATAAGGAGTGGGA+AGG 0.641068 5.2:+6940567 None:intergenic
GTCATTGCACCGAACCTGGG+TGG 0.644838 5.2:-6939657 MS.gene09626:CDS
AGGTTCGGTGCAATGACATG+AGG 0.653834 5.2:+6939663 None:intergenic
ACAAATCCATCAAACCCACT+AGG 0.656298 5.2:-6940270 MS.gene09626:CDS
TCTTGAAAGAAGGTAGACCA+TGG 0.675537 5.2:+6940729 None:intergenic
CACCAGCTGTTAGAACAATG+TGG 0.689195 5.2:+6940648 None:intergenic
TATCTATTCTGAAAACGACA+TGG 0.701566 5.2:-6940001 MS.gene09626:CDS
AAACAAACACGAAACCACCC+AGG 0.702988 5.2:+6939643 None:intergenic
GATGACGTTCAAAACCCCAA+GGG 0.717603 5.2:-6941253 MS.gene09626:CDS
TTGGCCATGAGAGTTGCATG+TGG 0.737064 5.2:+6941324 None:intergenic
AGACCTAAAATGGAGAACTG+GGG 0.753019 5.2:-6940412 MS.gene09626:CDS
GACACTGATGAAACTCGGAG+AGG 0.753561 5.2:+6940143 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATGTCTAAATAATTA+AGG - chr5.2:6939893-6939912 MS.gene09626:CDS 10.0%
!!! TTCTTAATTAAGATTTTTTT+TGG + chr5.2:6939799-6939818 None:intergenic 10.0%
!! AAATCTGCATATAAAAATAT+TGG + chr5.2:6940350-6940369 None:intergenic 15.0%
!! ATTATTTAGACATTATATGA+TGG + chr5.2:6939891-6939910 None:intergenic 15.0%
!! AAGCACACTAAATAAAAATA+TGG + chr5.2:6939630-6939649 None:intergenic 20.0%
!! ACACTAAATAAAAATATGGT+TGG + chr5.2:6939626-6939645 None:intergenic 20.0%
!! CAAATGTATTTGAATTAAGA+AGG + chr5.2:6941041-6941060 None:intergenic 20.0%
!! TAAATAAAAATATGGTTGGT+GGG + chr5.2:6939622-6939641 None:intergenic 20.0%
!!! ACATTTTTGAGAATCAAAAT+AGG - chr5.2:6940911-6940930 MS.gene09626:intron 20.0%
! AAGATTCTTCATATTTCCTA+GGG - chr5.2:6939484-6939503 MS.gene09626:CDS 25.0%
! AGAAGATATTATTCGATGTT+CGG - chr5.2:6941082-6941101 MS.gene09626:intron 25.0%
! CATTAAACTTAGCTATGAAA+AGG - chr5.2:6941187-6941206 MS.gene09626:intron 25.0%
! CTAAATAAAAATATGGTTGG+TGG + chr5.2:6939623-6939642 None:intergenic 25.0%
! GAAGAAATCTATTTCCAATT+GGG - chr5.2:6941299-6941318 MS.gene09626:CDS 25.0%
! GTCTAAATAATTAAGGTTGT+GGG - chr5.2:6939900-6939919 MS.gene09626:CDS 25.0%
! TAAGATCATTTCTTTCCTTA+AGG + chr5.2:6940678-6940697 None:intergenic 25.0%
! TAAGGAAAGAAATGATCTTA+AGG - chr5.2:6940678-6940697 MS.gene09626:CDS 25.0%
! TGTCTAAATAATTAAGGTTG+TGG - chr5.2:6939899-6939918 MS.gene09626:CDS 25.0%
!! AAATACATTTGAAGCTGAAA+TGG - chr5.2:6941050-6941069 MS.gene09626:intron 25.0%
!! AGACAAAAAATGCTTGTTAA+TGG - chr5.2:6940943-6940962 MS.gene09626:intron 25.0%
!! AGCTCATCACATAATTTTTA+GGG - chr5.2:6939772-6939791 MS.gene09626:CDS 25.0%
!! TAGCTCATCACATAATTTTT+AGG - chr5.2:6939771-6939790 MS.gene09626:CDS 25.0%
!!! TTATGAAGTTTTGATGTGAT+CGG + chr5.2:6939689-6939708 None:intergenic 25.0%
AAAATAAATACTACGTACCC+TGG + chr5.2:6940242-6940261 None:intergenic 30.0%
AAATAAATACTACGTACCCT+GGG + chr5.2:6940241-6940260 None:intergenic 30.0%
AACAAGAACCTTAAAGTCAA+AGG - chr5.2:6940484-6940503 MS.gene09626:intron 30.0%
ATAAACGACATGAACTCTTT+CGG + chr5.2:6940722-6940741 None:intergenic 30.0%
ATAAGTGACGAAATTTACTC+AGG - chr5.2:6940610-6940629 MS.gene09626:CDS 30.0%
CAAGATTCTTCATATTTCCT+AGG - chr5.2:6939483-6939502 MS.gene09626:CDS 30.0%
CGAAGAAATCTATTTCCAAT+TGG - chr5.2:6941298-6941317 MS.gene09626:CDS 30.0%
CTAGGAAATATGAAGAATCT+TGG + chr5.2:6939485-6939504 None:intergenic 30.0%
CTTAGCTATGAAAAGGTTAA+AGG - chr5.2:6941194-6941213 MS.gene09626:intron 30.0%
GATTTGATAGAGACCTAAAA+TGG - chr5.2:6940365-6940384 MS.gene09626:CDS 30.0%
TAACTTCCAAATCACAGAAT+CGG - chr5.2:6940432-6940451 MS.gene09626:intron 30.0%
TAAGTGACGAAATTTACTCA+GGG - chr5.2:6940611-6940630 MS.gene09626:CDS 30.0%
TATAGTCTATCCAAAGACTT+GGG - chr5.2:6940739-6940758 MS.gene09626:CDS 30.0%
TGTCTCAAAACAAATAATGC+TGG - chr5.2:6940988-6941007 MS.gene09626:intron 30.0%
TTAGACATTATATGATGGCT+TGG + chr5.2:6939886-6939905 None:intergenic 30.0%
TTATAGTCTATCCAAAGACT+TGG - chr5.2:6940738-6940757 MS.gene09626:CDS 30.0%
TTTGTTGCAAACTCCATTAA+TGG - chr5.2:6941219-6941238 MS.gene09626:intron 30.0%
! CTATTTCCAATTGGGTTTTT+CGG - chr5.2:6941307-6941326 MS.gene09626:CDS 30.0%
! TATCTATTCTGAAAACGACA+TGG - chr5.2:6940786-6940805 MS.gene09626:CDS 30.0%
!! GTTAATGGATTACAAAAAGC+AGG - chr5.2:6940958-6940977 MS.gene09626:intron 30.0%
ACCAATGCTTTCTTGAAAGA+AGG + chr5.2:6940071-6940090 None:intergenic 35.0%
ATTCTTCATATTTCCTAGGG+TGG - chr5.2:6939487-6939506 MS.gene09626:CDS 35.0%
CAAACTCCATTAATGGTGAA+GGG - chr5.2:6941226-6941245 MS.gene09626:CDS 35.0%
CCATTTGAATAATTCCCTTG+GGG + chr5.2:6939551-6939570 None:intergenic 35.0%
CCCAAGGGAATTATTCAAAT+GGG - chr5.2:6939549-6939568 MS.gene09626:CDS 35.0%
CCCATTTGAATAATTCCCTT+GGG + chr5.2:6939552-6939571 None:intergenic 35.0%
CTACAACACAAGAACTTCTT+AGG + chr5.2:6939754-6939773 None:intergenic 35.0%
TTGAAGCTGAAATGGAACTA+TGG - chr5.2:6941058-6941077 MS.gene09626:intron 35.0%
TTTGAGCTTGTGCATTGTAT+TGG + chr5.2:6940412-6940431 None:intergenic 35.0%
! ACCTTCTTTCAAGAAAGCAT+TGG - chr5.2:6940067-6940086 MS.gene09626:CDS 35.0%
! CGTAAAACTTCTAGAAGCTT+GGG + chr5.2:6941280-6941299 None:intergenic 35.0%
! CTAAGACACCTTTGACTTTA+AGG + chr5.2:6940495-6940514 None:intergenic 35.0%
! CTTTTGATCTATTGGAGTCA+TGG - chr5.2:6939955-6939974 MS.gene09626:CDS 35.0%
! TCGTAAAACTTCTAGAAGCT+TGG + chr5.2:6941281-6941300 None:intergenic 35.0%
!! GAAAGCATTGGTAGATTTCA+TGG - chr5.2:6940079-6940098 MS.gene09626:CDS 35.0%
!! GAACAAGTCTAGTACTGATA+TGG - chr5.2:6939721-6939740 MS.gene09626:CDS 35.0%
!!! ATAATGCTGGTTTGTTTTGC+TGG - chr5.2:6941001-6941020 MS.gene09626:intron 35.0%
!!! GAAAATGTCGAGTTTTGGTT+TGG - chr5.2:6940825-6940844 MS.gene09626:CDS 35.0%
!!! GGTTTTGAACGTCATCATAA+GGG + chr5.2:6939530-6939549 None:intergenic 35.0%
!!! TAATGCTGGTTTGTTTTGCT+GGG - chr5.2:6941002-6941021 MS.gene09626:intron 35.0%
AACCACATTGTTCTAACAGC+TGG - chr5.2:6940137-6940156 MS.gene09626:CDS 40.0%
ACAAATCCATCAAACCCACT+AGG - chr5.2:6940517-6940536 MS.gene09626:intron 40.0%
AGACCTAAAATGGAGAACTG+GGG - chr5.2:6940375-6940394 MS.gene09626:CDS 40.0%
AGAGACCTAAAATGGAGAAC+TGG - chr5.2:6940373-6940392 MS.gene09626:CDS 40.0%
AGATAGCCGAAAAACCCAAT+TGG + chr5.2:6941316-6941335 None:intergenic 40.0%
AGTTAACCTGATTCTCTGCA+AGG + chr5.2:6939575-6939594 None:intergenic 40.0%
CAGTGTCATGGAAATCCTTA+AGG - chr5.2:6940660-6940679 MS.gene09626:CDS 40.0%
CCCCAAGGGAATTATTCAAA+TGG - chr5.2:6939548-6939567 MS.gene09626:CDS 40.0%
GAGACCTAAAATGGAGAACT+GGG - chr5.2:6940374-6940393 MS.gene09626:CDS 40.0%
GCAAACTCCATTAATGGTGA+AGG - chr5.2:6941225-6941244 MS.gene09626:CDS 40.0%
GCCCATTTGAATAATTCCCT+TGG + chr5.2:6939553-6939572 None:intergenic 40.0%
GCTGTTAGAACAATGTGGTT+TGG + chr5.2:6940137-6940156 None:intergenic 40.0%
GTTTGAATCCAGCTACATCT+GGG + chr5.2:6939992-6940011 None:intergenic 40.0%
TATCTCCTCTCATCTATGCT+AGG - chr5.2:6940865-6940884 MS.gene09626:intron 40.0%
TCCATGACACTGATGAAACT+CGG + chr5.2:6940652-6940671 None:intergenic 40.0%
TCTTGAAAGAAGGTAGACCA+TGG + chr5.2:6940061-6940080 None:intergenic 40.0%
TTGACATTGTAGTGCCTAGT+GGG + chr5.2:6940534-6940553 None:intergenic 40.0%
TTTGACATTGTAGTGCCTAG+TGG + chr5.2:6940535-6940554 None:intergenic 40.0%
! ATGTTTTGCCTTGCTGAACA+AGG - chr5.2:6940185-6940204 MS.gene09626:CDS 40.0%
! GCAACGAAAATGTCGAGTTT+TGG - chr5.2:6940820-6940839 MS.gene09626:CDS 40.0%
! GCAGCTGTCTTTTGATCTAT+TGG - chr5.2:6939947-6939966 MS.gene09626:CDS 40.0%
!!! GGGTTTTGAACGTCATCATA+AGG + chr5.2:6939531-6939550 None:intergenic 40.0%
AAACAAACACGAAACCACCC+AGG + chr5.2:6941147-6941166 None:intergenic 45.0%
AAAGCCACATGCAACTCTCA+TGG - chr5.2:6939459-6939478 MS.gene09626:CDS 45.0%
AAGCTTCTCCTTGTTCAGCA+AGG + chr5.2:6940196-6940215 None:intergenic 45.0%
AAGGTAGACCATGGTAGTCT+TGG + chr5.2:6940052-6940071 None:intergenic 45.0%
ACTACGTACCCTGGGTAATA+AGG + chr5.2:6940233-6940252 None:intergenic 45.0%
ACTGCACCCTTCACCATTAA+TGG + chr5.2:6941235-6941254 None:intergenic 45.0%
CACCAGCTGTTAGAACAATG+TGG + chr5.2:6940142-6940161 None:intergenic 45.0%
CAGAATAGATAGCGCCTACA+CGG + chr5.2:6940777-6940796 None:intergenic 45.0%
CGTTTGAATCCAGCTACATC+TGG + chr5.2:6939993-6940012 None:intergenic 45.0%
GAGTGTCTCATTTGCAGAAG+TGG + chr5.2:6940165-6940184 None:intergenic 45.0%
GATGACGTTCAAAACCCCAA+GGG - chr5.2:6939534-6939553 MS.gene09626:CDS 45.0%
GATTTCATGGCTGAGATTCG+AGG - chr5.2:6940092-6940111 MS.gene09626:CDS 45.0%
GTAGCTGGATTCAAACGTGA+TGG - chr5.2:6939996-6940015 MS.gene09626:CDS 45.0%
GTTCGGTTGAACATTTCACC+TGG - chr5.2:6941099-6941118 MS.gene09626:intron 45.0%
TACCCTGGGTAATAAGGAGT+GGG + chr5.2:6940227-6940246 None:intergenic 45.0%
TCCGAGTTTCATCAGTGTCA+TGG - chr5.2:6940648-6940667 MS.gene09626:CDS 45.0%
TCTCATATTCTTGCCACCCT+AGG + chr5.2:6939503-6939522 None:intergenic 45.0%
TGAAAACGACATGGTCGTTG+CGG - chr5.2:6940795-6940814 MS.gene09626:CDS 45.0%
TGTCACCTAGCATAGATGAG+AGG + chr5.2:6940873-6940892 None:intergenic 45.0%
TTCCCACTCCTTATTACCCA+GGG - chr5.2:6940222-6940241 MS.gene09626:CDS 45.0%
! GCAAAGCCGATTCTGTGATT+TGG + chr5.2:6940441-6940460 None:intergenic 45.0%
! TGATGACGTTCAAAACCCCA+AGG - chr5.2:6939533-6939552 MS.gene09626:CDS 45.0%
AACACGAAACCACCCAGGTT+CGG + chr5.2:6941142-6941161 None:intergenic 50.0%
AATGGGCCTTGCAGAGAATC+AGG - chr5.2:6939566-6939585 MS.gene09626:CDS 50.0%
ACCTGGCAAACCCAAGTCTT+TGG + chr5.2:6940752-6940771 None:intergenic 50.0%
CATGTCATTGCACCGAACCT+GGG - chr5.2:6941127-6941146 MS.gene09626:intron 50.0%
CTGGGTAATAAGGAGTGGGA+AGG + chr5.2:6940223-6940242 None:intergenic 50.0%
CTTCCCACTCCTTATTACCC+AGG - chr5.2:6940221-6940240 MS.gene09626:CDS 50.0%
GACACTGATGAAACTCGGAG+AGG + chr5.2:6940647-6940666 None:intergenic 50.0%
GCTAAGAACCCAGATGTAGC+TGG - chr5.2:6939981-6940000 MS.gene09626:CDS 50.0%
GCTCTCTTCCAAGACTACCA+TGG - chr5.2:6940041-6940060 MS.gene09626:CDS 50.0%
GTACCCTGGGTAATAAGGAG+TGG + chr5.2:6940228-6940247 None:intergenic 50.0%
TCATGTCATTGCACCGAACC+TGG - chr5.2:6941126-6941145 MS.gene09626:intron 50.0%
TCCAAAGACTTGGGTTTGCC+AGG - chr5.2:6940748-6940767 MS.gene09626:CDS 50.0%
TTGGCCATGAGAGTTGCATG+TGG + chr5.2:6939466-6939485 None:intergenic 50.0%
! CGACCCCAGTTCTCCATTTT+AGG + chr5.2:6940381-6940400 None:intergenic 50.0%
!! AGGTTCGGTGCAATGACATG+AGG + chr5.2:6941127-6941146 None:intergenic 50.0%
!! GTAGTGCCTAGTGGGTTTGA+TGG + chr5.2:6940526-6940545 None:intergenic 50.0%
ATAGCGCCTACACGGAAACC+TGG + chr5.2:6940769-6940788 None:intergenic 55.0%
GGTTTGCCAGGTTTCCGTGT+AGG - chr5.2:6940760-6940779 MS.gene09626:CDS 55.0%
! GTGCAATGACATGAGGCACC+AGG + chr5.2:6941120-6941139 None:intergenic 55.0%
GTCATTGCACCGAACCTGGG+TGG - chr5.2:6941130-6941149 MS.gene09626:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 6939441 6941368 6939441 ID=MS.gene09626
chr5.2 mRNA 6939441 6941368 6939441 ID=MS.gene09626.t1;Parent=MS.gene09626
chr5.2 exon 6941222 6941368 6941222 ID=MS.gene09626.t1.exon1;Parent=MS.gene09626.t1
chr5.2 CDS 6941222 6941368 6941222 ID=cds.MS.gene09626.t1;Parent=MS.gene09626.t1
chr5.2 exon 6940566 6940858 6940566 ID=MS.gene09626.t1.exon2;Parent=MS.gene09626.t1
chr5.2 CDS 6940566 6940858 6940566 ID=cds.MS.gene09626.t1;Parent=MS.gene09626.t1
chr5.2 exon 6939441 6940443 6939441 ID=MS.gene09626.t1.exon3;Parent=MS.gene09626.t1
chr5.2 CDS 6939441 6940443 6939441 ID=cds.MS.gene09626.t1;Parent=MS.gene09626.t1
Gene Sequence

>MS.gene09626

ATGAAGTTGCTATCTACAAAAGCCACATGCAACTCTCATGGCCAAGATTCTTCATATTTCCTAGGGTGGCAAGAATATGAGAAGAACCCTTATGATGACGTTCAAAACCCCAAGGGAATTATTCAAATGGGCCTTGCAGAGAATCAGGTTAACTATATTTTTAATTCATATTAATAATCCCACCAACCATATTTTTATTTAGTGTGCTTAAATATCATTCACAATTAAACTACACATTAATGTATCCGATCACATCAAAACTTCATAATTAAACGTGTTTGAACAAGTCTAGTACTGATATGGTTTATCTCCTAAGAAGTTCTTGTGTTGTAGCTCATCACATAATTTTTAGGGACCAAAAAAAATCTTAATTAAGAAAGACAAAACTATAGAAAAAACAAAACTAATTCATTGTGTGTTTTTGTGTCACAATCTAACTAGACCAAGCCATCATATAATGTCTAAATAATTAAGGTTGTGGGCTAACAAGATTTTTGTCATTATTTGCAGCTGTCTTTTGATCTATTGGAGTCATGGCTAGCTAAGAACCCAGATGTAGCTGGATTCAAACGTGATGGAAAATCAATATTTAGAGAGCTTGCTCTCTTCCAAGACTACCATGGTCTACCTTCTTTCAAGAAAGCATTGGTAGATTTCATGGCTGAGATTCGAGGAAACAAAGTCACTTTTGATCCAAACCACATTGTTCTAACAGCTGGTGCCACTTCTGCAAATGAGACACTCATGTTTTGCCTTGCTGAACAAGGAGAAGCTTTTCTCCTTCCCACTCCTTATTACCCAGGGTACGTAGTATTTATTTTGCATGCATGTGATAGTTTTTTCTACTAAATTTTTGTCGTTAATTAAAAAAAAAAATTATATAATTAATAAAAACTCATTAAATTGCCAATATTTTTATATGCAGATTTGATAGAGACCTAAAATGGAGAACTGGGGTCGAGATAGTGCCAATACAATGCACAAGCTCAAATAACTTCCAAATCACAGAATCGGCTTTGCAACAAGCTTATGAAGAAGCAAAGAACAAGAACCTTAAAGTCAAAGGTGTCTTAGTCACAAATCCATCAAACCCACTAGGCACTACAATGTCAAAGAGTGAATTAAACTTTCTCGTTGACTTCATCAAAGACAACAAAGACATGCATTTAATAAGTGACGAAATTTACTCAGGGACAGTTTTTACCTCTCCGAGTTTCATCAGTGTCATGGAAATCCTTAAGGAAAGAAATGATCTTAAGGATGTTGACGCTGACATCTCCGAAAGAGTTCATGTCGTTTATAGTCTATCCAAAGACTTGGGTTTGCCAGGTTTCCGTGTAGGCGCTATCTATTCTGAAAACGACATGGTCGTTGCGGCTGCAACGAAAATGTCGAGTTTTGGTTTGGTTTCATCACAAACTCAATATCTCCTCTCATCTATGCTAGGTGACAAAAAATTCACAAAAAACTACATTTTTGAGAATCAAAATAGGCTTAAAAAAAGACAAAAAATGCTTGTTAATGGATTACAAAAAGCAGGTATTAGTTGTCTCAAAACAAATAATGCTGGTTTGTTTTGCTGGGTTGATATGAGACACCTTCTTAATTCAAATACATTTGAAGCTGAAATGGAACTATGGAAGAAGATATTATTCGATGTTCGGTTGAACATTTCACCTGGTGCCTCATGTCATTGCACCGAACCTGGGTGGTTTCGTGTTTGTTTTGCTAACATGTCAGAAGATACATTAAACTTAGCTATGAAAAGGTTAAAGGACTTTGTTGCAAACTCCATTAATGGTGAAGGGTGCAGTAATAATAAGAAGACTAGAAGTACCCAAGCTTCTAGAAGTTTTACGAAGAAATCTATTTCCAATTGGGTTTTTCGGCTATCTTCTCGTGATCATCGTGAACAAGAAGAACGATAG
Protein sequence

>MS.gene09626.t1

MKLLSTKATCNSHGQDSSYFLGWQEYEKNPYDDVQNPKGIIQMGLAENQLSFDLLESWLAKNPDVAGFKRDGKSIFRELALFQDYHGLPSFKKALVDFMAEIRGNKVTFDPNHIVLTAGATSANETLMFCLAEQGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSSNNFQITESALQQAYEEAKNKNLKVKGVLVTNPSNPLGTTMSKSELNFLVDFIKDNKDMHLISDEIYSGTVFTSPSFISVMEILKERNDLKDVDADISERVHVVYSLSKDLGLPGFRVGAIYSENDMVVAAATKMSSFGLVSSQTQYLLSSMLGDKKFTKNYIFENQNRLKKRQKMLVNGLQKAGISCLKTNNAGLFCWVDMRHLLNSNTFEAEMELWKKILFDVRLNISPGASCHCTEPGWFRVCFANMSEDTLNLAMKRLKDFVANSINGEGCSNNKKTRSTQASRSFTKKSISNWVFRLSSRDHREQEER