Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20839.t1 | RHN81055.1 | 91.4 | 701 | 55 | 2 | 1 | 698 | 1 | 699 | 0.00E+00 | 1205.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20839.t1 | F4HXL0 | 54.0 | 741 | 270 | 14 | 1 | 698 | 1 | 713 | 1.6e-198 | 694.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20839.t1 | A0A396JY70 | 91.4 | 701 | 55 | 2 | 1 | 698 | 1 | 699 | 0.0e+00 | 1205.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene20839 | 0.830541 | 2.77E-55 | -1.69E-46 |
| MS.gene04998 | MS.gene20839 | 0.813712 | 2.23E-51 | -1.69E-46 |
| MS.gene050359 | MS.gene20839 | 0.825371 | 4.86E-54 | -1.69E-46 |
| MS.gene050414 | MS.gene20839 | 0.806957 | 6.39E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene20839 | 0.81647 | 5.44E-52 | -1.69E-46 |
| MS.gene051043 | MS.gene20839 | 0.801597 | 8.35E-49 | -1.69E-46 |
| MS.gene051184 | MS.gene20839 | 0.80603 | 1.00E-49 | -1.69E-46 |
| MS.gene051226 | MS.gene20839 | 0.871622 | 5.94E-67 | -1.69E-46 |
| MS.gene051343 | MS.gene20839 | 0.815221 | 1.03E-51 | -1.69E-46 |
| MS.gene051819 | MS.gene20839 | 0.80657 | 7.72E-50 | -1.69E-46 |
| MS.gene052016 | MS.gene20839 | 0.821404 | 4.11E-53 | -1.69E-46 |
| MS.gene053058 | MS.gene20839 | 0.804583 | 2.01E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene20839 | 0.803778 | 2.96E-49 | -1.69E-46 |
| MS.gene053564 | MS.gene20839 | 0.800878 | 1.17E-48 | -1.69E-46 |
| MS.gene053726 | MS.gene20839 | 0.814515 | 1.48E-51 | -1.69E-46 |
| MS.gene053931 | MS.gene20839 | 0.809306 | 2.02E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene20839 | 0.855769 | 5.05E-62 | -1.69E-46 |
| MS.gene054893 | MS.gene20839 | 0.862657 | 4.34E-64 | -1.69E-46 |
| MS.gene05615 | MS.gene20839 | 0.835879 | 1.30E-56 | -1.69E-46 |
| MS.gene056181 | MS.gene20839 | 0.813082 | 3.06E-51 | -1.69E-46 |
| MS.gene057093 | MS.gene20839 | 0.825488 | 4.56E-54 | -1.69E-46 |
| MS.gene057622 | MS.gene20839 | 0.834678 | 2.61E-56 | -1.69E-46 |
| MS.gene058095 | MS.gene20839 | 0.811421 | 7.06E-51 | -1.69E-46 |
| MS.gene058292 | MS.gene20839 | 0.807308 | 5.39E-50 | -1.69E-46 |
| MS.gene059007 | MS.gene20839 | 0.838714 | 2.44E-57 | -1.69E-46 |
| MS.gene060964 | MS.gene20839 | 0.800109 | 1.68E-48 | -1.69E-46 |
| MS.gene061100 | MS.gene20839 | 0.802251 | 6.13E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20839.t1 | MTR_1g087330 | 95.833 | 528 | 17 | 2 | 1 | 525 | 1 | 526 | 0.0 | 995 |
| MS.gene20839.t1 | MTR_7g109350 | 63.142 | 662 | 187 | 13 | 30 | 683 | 39 | 651 | 0.0 | 770 |
| MS.gene20839.t1 | MTR_7g117280 | 45.946 | 555 | 260 | 10 | 97 | 624 | 126 | 667 | 9.95e-150 | 451 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20839.t1 | AT1G02660 | 57.005 | 728 | 268 | 13 | 1 | 698 | 1 | 713 | 0.0 | 744 |
| MS.gene20839.t1 | AT3G62590 | 50.700 | 714 | 256 | 15 | 1 | 695 | 1 | 637 | 0.0 | 604 |
| MS.gene20839.t1 | AT3G61680 | 47.672 | 537 | 240 | 7 | 94 | 620 | 120 | 625 | 1.06e-149 | 450 |
| MS.gene20839.t1 | AT3G61680 | 47.672 | 537 | 240 | 7 | 94 | 620 | 120 | 625 | 1.06e-149 | 450 |
| MS.gene20839.t1 | AT3G61680 | 47.672 | 537 | 240 | 7 | 94 | 620 | 120 | 625 | 1.06e-149 | 450 |
Find 154 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAAATTACCTTGATATT+TGG | 0.154361 | 1.3:+61805059 | None:intergenic |
| AGAAACCCTCCTTAGCATTT+TGG | 0.155210 | 1.3:+61805142 | None:intergenic |
| ATCCTATATCCACCATTATT+TGG | 0.160237 | 1.3:+61804126 | None:intergenic |
| GCAATTACCTCAAATTTAAT+TGG | 0.213954 | 1.3:+61803639 | None:intergenic |
| CCCTGCTAGGATGTTAATAT+TGG | 0.229996 | 1.3:-61802407 | MS.gene20839:CDS |
| TACGGATCTGGTTAAGTTCT+TGG | 0.252856 | 1.3:+61802647 | None:intergenic |
| GTCTCTCGACGACGCCGTTT+TGG | 0.268578 | 1.3:-61805417 | MS.gene20839:CDS |
| AATGCTAAGGAGGGTTTCTT+TGG | 0.270200 | 1.3:-61805138 | MS.gene20839:CDS |
| GATGTCACACTTGGGGAGTT+TGG | 0.270494 | 1.3:-61805093 | MS.gene20839:CDS |
| CCTGCTAGGATGTTAATATT+GGG | 0.281713 | 1.3:-61802406 | MS.gene20839:CDS |
| CTACTTCCTGTGATAACATT+TGG | 0.282356 | 1.3:-61803296 | MS.gene20839:CDS |
| TGCCTTGCGGCAGAAGATTA+TGG | 0.283373 | 1.3:+61802869 | None:intergenic |
| CAGGAAGAGAGTCCTTAAAA+AGG | 0.312198 | 1.3:-61802483 | MS.gene20839:CDS |
| TCCACCATTATTTGGCTCCT+TGG | 0.317715 | 1.3:+61804134 | None:intergenic |
| TTTAGGTGAGCATGAACTTC+TGG | 0.322356 | 1.3:+61803431 | None:intergenic |
| TTAAGTGACCGATCTGCTTA+TGG | 0.329267 | 1.3:-61802739 | MS.gene20839:CDS |
| CATTTCATATCATTCATCTA+AGG | 0.331288 | 1.3:+61802365 | None:intergenic |
| GACCGATCTGCTTATGGATA+TGG | 0.334565 | 1.3:-61802733 | MS.gene20839:CDS |
| CTTGGTGAAAATTTCTCATC+TGG | 0.344080 | 1.3:+61802892 | None:intergenic |
| CTTGATATTTGGTATAGAAT+AGG | 0.352328 | 1.3:+61805070 | None:intergenic |
| GATACCCATTGGAATCTCTA+TGG | 0.358600 | 1.3:-61805472 | MS.gene20839:CDS |
| CATGTCATGATCTCTTTGTA+TGG | 0.368198 | 1.3:+61802705 | None:intergenic |
| AGGATGGGCAGAGAGAGAAT+TGG | 0.368257 | 1.3:-61805349 | MS.gene20839:CDS |
| AGCTTCTTGTCCGTGTCATT+AGG | 0.369839 | 1.3:+61802811 | None:intergenic |
| GGATGGGCAGAGAGAGAATT+GGG | 0.390719 | 1.3:-61805348 | MS.gene20839:CDS |
| CTCGCATCGATTTACGGATC+TGG | 0.403958 | 1.3:+61802635 | None:intergenic |
| CGCAGAAGTGGCATCTTTGA+TGG | 0.405975 | 1.3:-61803968 | MS.gene20839:CDS |
| CGTGCAACTTTCCGTTTCAC+TGG | 0.411226 | 1.3:-61803395 | MS.gene20839:CDS |
| CGTTTCACTGGACATTCCCT+TGG | 0.413018 | 1.3:-61803383 | MS.gene20839:CDS |
| CCCAATATTAACATCCTAGC+AGG | 0.442858 | 1.3:+61802406 | None:intergenic |
| TTGATACCAGCATTGTTGTT+GGG | 0.446372 | 1.3:-61802567 | MS.gene20839:CDS |
| CAACGCCAGTCACCATTCTC+TGG | 0.447321 | 1.3:-61802517 | MS.gene20839:CDS |
| TTCACGACCCACCGCACTTA+CGG | 0.447728 | 1.3:+61805535 | None:intergenic |
| ACATTCCCTTGGTGGAAGCT+TGG | 0.448070 | 1.3:-61803372 | MS.gene20839:CDS |
| GACAGCAGTGGTTGCGGCAA+AGG | 0.448188 | 1.3:-61803929 | MS.gene20839:CDS |
| ATTGTTCCTTCGATCTCCAT+TGG | 0.450078 | 1.3:-61805599 | MS.gene20839:CDS |
| TTCACTGGACATTCCCTTGG+TGG | 0.452430 | 1.3:-61803380 | MS.gene20839:CDS |
| GAAACCAAGGAGCCAAATAA+TGG | 0.453919 | 1.3:-61804138 | MS.gene20839:CDS |
| GGGAAACTCTTAAAACATTA+CGG | 0.455788 | 1.3:-61804255 | MS.gene20839:CDS |
| GTTCGGAGTCATTAGCATCT+TGG | 0.455806 | 1.3:-61803683 | MS.gene20839:CDS |
| GTTCAAGAACGTCAACTTTG+CGG | 0.456069 | 1.3:+61802783 | None:intergenic |
| CCTGCACGTGGCTTCGCGGC+AGG | 0.457427 | 1.3:+61803225 | None:intergenic |
| TTCTCTATTATCTTCCAAAA+CGG | 0.458755 | 1.3:+61805403 | None:intergenic |
| GTTCCTTCGATCTCCATTGG+TGG | 0.483103 | 1.3:-61805596 | MS.gene20839:CDS |
| ACACAAATAAATGCATGTGT+TGG | 0.484143 | 1.3:+61802440 | None:intergenic |
| CGCATCTACCGTAAGTGCGG+TGG | 0.485121 | 1.3:-61805543 | MS.gene20839:CDS |
| TGTTGGGAGGTCCATGGTAT+CGG | 0.485167 | 1.3:-61802551 | MS.gene20839:CDS |
| GTTATAGATGACGGTGAGGA+TGG | 0.490623 | 1.3:-61805365 | MS.gene20839:CDS |
| ACTTCTTCAAATGCAGCGGC+TGG | 0.497103 | 1.3:-61804024 | MS.gene20839:CDS |
| AGCCAAATAATGGTGGATAT+AGG | 0.497389 | 1.3:-61804128 | MS.gene20839:CDS |
| CTTAATATCTCAAGTGGATG+AGG | 0.501462 | 1.3:+61802757 | None:intergenic |
| GTTGATACCAGCATTGTTGT+TGG | 0.504284 | 1.3:-61802568 | MS.gene20839:CDS |
| ATTGCCTGCACGTGGCTTCG+CGG | 0.504752 | 1.3:+61803221 | None:intergenic |
| CCTGCCGCGAAGCCACGTGC+AGG | 0.508181 | 1.3:-61803225 | MS.gene20839:CDS |
| GTATATATGAGGCTGCTAAA+GGG | 0.510063 | 1.3:-61803472 | MS.gene20839:CDS |
| CACAAATAAATGCATGTGTT+GGG | 0.510490 | 1.3:+61802441 | None:intergenic |
| TTCAGTGACAGCAGTGGTTG+CGG | 0.512338 | 1.3:-61803935 | MS.gene20839:CDS |
| CTCGTTCGTCACCTTGCGAA+TGG | 0.517823 | 1.3:-61803867 | MS.gene20839:CDS |
| GGTATATATGAGGCTGCTAA+AGG | 0.517913 | 1.3:-61803473 | MS.gene20839:CDS |
| CATTGTTGTTGGGAGGTCCA+TGG | 0.518484 | 1.3:-61802557 | MS.gene20839:CDS |
| GTCTTCATTATGCCAGAGAA+TGG | 0.522085 | 1.3:+61802505 | None:intergenic |
| CAAGGGAATGTCCAGTGAAA+CGG | 0.522758 | 1.3:+61803384 | None:intergenic |
| CTATTCTATACCAAATATCA+AGG | 0.525327 | 1.3:-61805069 | MS.gene20839:intron |
| AATGTTTGGAAAGGGGAACA+AGG | 0.528089 | 1.3:-61805302 | MS.gene20839:CDS |
| ATCCTCACCGTCATCTATAA+CGG | 0.528135 | 1.3:+61805367 | None:intergenic |
| AAAATCTGAGAAAATTCCTC+AGG | 0.530787 | 1.3:-61804187 | MS.gene20839:CDS |
| AATCTTCTGCCGCAAGGCAG+TGG | 0.532114 | 1.3:-61802865 | MS.gene20839:CDS |
| AAGCTACTATACACACCAAT+GGG | 0.534284 | 1.3:-61802934 | MS.gene20839:CDS |
| TTCTCTGGCATAATGAAGAC+AGG | 0.536058 | 1.3:-61802502 | MS.gene20839:CDS |
| CATATATACCTCTGTGCACA+AGG | 0.536219 | 1.3:+61803486 | None:intergenic |
| TCAAATGCAGCGGCTGGTGA+AGG | 0.538184 | 1.3:-61804018 | MS.gene20839:CDS |
| CTTCTGCGTTCATCATGTCA+AGG | 0.540763 | 1.3:+61803983 | None:intergenic |
| AGAACGTCAACTTTGCGGCT+CGG | 0.546820 | 1.3:+61802788 | None:intergenic |
| AGAATCAGCAATTCACCCAT+TGG | 0.548209 | 1.3:+61802919 | None:intergenic |
| CTGCTAGGATGTTAATATTG+GGG | 0.549191 | 1.3:-61802405 | MS.gene20839:CDS |
| GGTTCCCCTTCCATCATGTG+TGG | 0.551578 | 1.3:-61803275 | MS.gene20839:CDS |
| CGCCTCCACACATGATGGAA+GGG | 0.552230 | 1.3:+61803270 | None:intergenic |
| ATGTGAAGAATGTTTGGAAA+GGG | 0.553617 | 1.3:-61805310 | MS.gene20839:CDS |
| TGCGGCAGAAGATTATGGCT+TGG | 0.555573 | 1.3:+61802874 | None:intergenic |
| CGGTCACTTAATATCTCAAG+TGG | 0.555750 | 1.3:+61802751 | None:intergenic |
| AGCAGTGGTTGCGGCAAAGG+AGG | 0.558429 | 1.3:-61803926 | MS.gene20839:CDS |
| GGCAAAGGAGGAAGTAAAGC+AGG | 0.560431 | 1.3:-61803914 | MS.gene20839:CDS |
| GGACCTCCCAACAACAATGC+TGG | 0.562296 | 1.3:+61802561 | None:intergenic |
| GCTGCATTTGAAGAAGTGAA+TGG | 0.563038 | 1.3:+61804030 | None:intergenic |
| CATGTGAAGAATGTTTGGAA+AGG | 0.563671 | 1.3:-61805311 | MS.gene20839:CDS |
| CGATCTGCTTATGGATATGG+AGG | 0.563863 | 1.3:-61802730 | MS.gene20839:CDS |
| ATACCAGCATTGTTGTTGGG+AGG | 0.566961 | 1.3:-61802564 | MS.gene20839:CDS |
| GTATGCTCAGATGTCACACT+TGG | 0.567630 | 1.3:-61805102 | MS.gene20839:CDS |
| TGACATGATGAACGCAGAAG+TGG | 0.568983 | 1.3:-61803980 | MS.gene20839:CDS |
| TTTACTTGGTTATTGAGACA+TGG | 0.572898 | 1.3:+61803098 | None:intergenic |
| TTACTTGGTTATTGAGACAT+GGG | 0.574179 | 1.3:+61803099 | None:intergenic |
| TCTTTACTTTCGACTTCCTG+AGG | 0.574252 | 1.3:+61804171 | None:intergenic |
| CAAGGGAATCATGAAAGAGA+AGG | 0.574584 | 1.3:-61805284 | MS.gene20839:CDS |
| CTCACCGTCATCTATAACGG+TGG | 0.576554 | 1.3:+61805370 | None:intergenic |
| TTATAGATGACGGTGAGGAT+GGG | 0.579980 | 1.3:-61805364 | MS.gene20839:CDS |
| CGACGGAACAGAACGTTCAG+TGG | 0.580188 | 1.3:-61805443 | MS.gene20839:CDS |
| AGAGAAGCAAGAAGAAACCA+AGG | 0.581266 | 1.3:-61804151 | MS.gene20839:CDS |
| TCGCCTCCACACATGATGGA+AGG | 0.582366 | 1.3:+61803269 | None:intergenic |
| TCCATGGTATCGGTCAGTAT+CGG | 0.583827 | 1.3:-61802541 | MS.gene20839:CDS |
| CTCCATATCCATAAGCAGAT+CGG | 0.583834 | 1.3:+61802731 | None:intergenic |
| GGGGAACCAAATGTTATCAC+AGG | 0.584190 | 1.3:+61803290 | None:intergenic |
| GCCGATACTGACCGATACCA+TGG | 0.588719 | 1.3:+61802540 | None:intergenic |
| GAGAGAAAAGACGCAAGGTA+TGG | 0.588772 | 1.3:-61802615 | MS.gene20839:CDS |
| GCATTATAATTGCCTGCACG+TGG | 0.590797 | 1.3:+61803213 | None:intergenic |
| GAAGCTACTATACACACCAA+TGG | 0.592530 | 1.3:-61802935 | MS.gene20839:CDS |
| TAGTGCCAAGCTTCCACCAA+GGG | 0.594028 | 1.3:+61803367 | None:intergenic |
| TGTGCACAGAGGTATATATG+AGG | 0.594337 | 1.3:-61803483 | MS.gene20839:CDS |
| GACACTCTACTTGAAAAGCT+TGG | 0.594758 | 1.3:-61803248 | MS.gene20839:CDS |
| AGCCATAATCTTCTGCCGCA+AGG | 0.595034 | 1.3:-61802871 | MS.gene20839:CDS |
| AACGTTCTGTTCCGTCGTTG+TGG | 0.595293 | 1.3:+61805449 | None:intergenic |
| ATGTTTGGAAAGGGGAACAA+GGG | 0.596462 | 1.3:-61805301 | MS.gene20839:CDS |
| TATGCTCAGATGTCACACTT+GGG | 0.597591 | 1.3:-61805101 | MS.gene20839:CDS |
| ACAGGAAGTAGAGAGGTGAT+TGG | 0.597627 | 1.3:+61803308 | None:intergenic |
| AGTGTCGCCTCCACACATGA+TGG | 0.598823 | 1.3:+61803265 | None:intergenic |
| AGAAAAGACGCAAGGTATGG+TGG | 0.599163 | 1.3:-61802612 | MS.gene20839:CDS |
| GCCTCCACACATGATGGAAG+GGG | 0.599219 | 1.3:+61803271 | None:intergenic |
| GTGGCCATAGAGATTCCAAT+GGG | 0.600305 | 1.3:+61805468 | None:intergenic |
| TCCCCTTCCATCATGTGTGG+AGG | 0.601542 | 1.3:-61803272 | MS.gene20839:CDS |
| CAGAGAATGGTGACTGGCGT+TGG | 0.604405 | 1.3:+61802518 | None:intergenic |
| CGCACTTACGGTAGATGCGG+TGG | 0.605825 | 1.3:+61805547 | None:intergenic |
| TGCTAGGATGTTAATATTGG+GGG | 0.605936 | 1.3:-61802404 | MS.gene20839:CDS |
| ACCAAGGAGCCAAATAATGG+TGG | 0.606415 | 1.3:-61804135 | MS.gene20839:CDS |
| ATTCACTTCTTCAAATGCAG+CGG | 0.610395 | 1.3:-61804028 | MS.gene20839:CDS |
| GCATCTACCGTAAGTGCGGT+GGG | 0.614606 | 1.3:-61805542 | MS.gene20839:CDS |
| GTGCAGATAAGATGCAGCAG+AGG | 0.621656 | 1.3:+61804074 | None:intergenic |
| GATCCACCAATGGAGATCGA+AGG | 0.628096 | 1.3:+61805593 | None:intergenic |
| ACTCGTCGCGGTAGTACAAG+AGG | 0.630459 | 1.3:+61802589 | None:intergenic |
| AATCTCTATGGCCACAACGA+CGG | 0.633455 | 1.3:-61805460 | MS.gene20839:CDS |
| TTATGCCAGAGAATGGTGAC+TGG | 0.635201 | 1.3:+61802512 | None:intergenic |
| TGTGGCCATAGAGATTCCAA+TGG | 0.646166 | 1.3:+61805467 | None:intergenic |
| TCGCAGATGAACCATTCGCA+AGG | 0.648265 | 1.3:+61803856 | None:intergenic |
| CACCGCATCTACCGTAAGTG+CGG | 0.649836 | 1.3:-61805546 | MS.gene20839:CDS |
| TGTATCTAAAGATCCACCAA+TGG | 0.652056 | 1.3:+61805583 | None:intergenic |
| ATGCTCAGATGTCACACTTG+GGG | 0.652908 | 1.3:-61805100 | MS.gene20839:CDS |
| AAAACCACCGTTATAGATGA+CGG | 0.656587 | 1.3:-61805374 | MS.gene20839:CDS |
| TGGATATAGGATAAGTGCAA+CGG | 0.659737 | 1.3:-61804115 | MS.gene20839:CDS |
| CACCGCACTTACGGTAGATG+CGG | 0.662356 | 1.3:+61805544 | None:intergenic |
| TTGGATGTCCTTGTGCACAG+AGG | 0.663273 | 1.3:-61803494 | MS.gene20839:CDS |
| AGATATAGACCACTGCCTTG+CGG | 0.663361 | 1.3:+61802856 | None:intergenic |
| CCAATATTAACATCCTAGCA+GGG | 0.667471 | 1.3:+61802407 | None:intergenic |
| GTGTCATTAGGTTCTGACAA+AGG | 0.671563 | 1.3:+61802823 | None:intergenic |
| CATGCTCACCTAAAATCTCG+AGG | 0.672833 | 1.3:-61803422 | MS.gene20839:CDS |
| TACTGATTCAGTGACAGCAG+TGG | 0.675088 | 1.3:-61803941 | MS.gene20839:CDS |
| GATGCGAGAGAAAAGACGCA+AGG | 0.678863 | 1.3:-61802620 | MS.gene20839:CDS |
| TGTTATCACAGGAAGTAGAG+AGG | 0.682469 | 1.3:+61803301 | None:intergenic |
| CACCGTTATAGATGACGGTG+AGG | 0.686310 | 1.3:-61805369 | MS.gene20839:CDS |
| TTTGTCAGAACCTAATGACA+CGG | 0.688799 | 1.3:-61802821 | MS.gene20839:CDS |
| TGTGAAGAATGTTTGGAAAG+GGG | 0.703391 | 1.3:-61805309 | MS.gene20839:CDS |
| GTAGTGCCAAGCTTCCACCA+AGG | 0.715098 | 1.3:+61803366 | None:intergenic |
| TCAAGTTTGTGATACTTGCG+CGG | 0.721242 | 1.3:-61805222 | MS.gene20839:CDS |
| ATCTGCGATGATAACCAGAG+TGG | 0.733794 | 1.3:-61803841 | MS.gene20839:CDS |
| TAATTGCAAGAAAATGCTCG+CGG | 0.749108 | 1.3:+61803176 | None:intergenic |
| ATGCTGGTATCAACTCGTCG+CGG | 0.755961 | 1.3:+61802577 | None:intergenic |
| GCTGAGAATGATGAAAACAA+CGG | 0.787436 | 1.3:-61805254 | MS.gene20839:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTAAAAGACAAACTT+TGG | + | chr1.3:61803227-61803246 | None:intergenic | 15.0% |
| !!! | AGAAAAAACATAAAACTTTT+TGG | + | chr1.3:61804951-61804970 | None:intergenic | 15.0% |
| !!! | TATGTTTTTTCTTTATTGAT+AGG | - | chr1.3:61804959-61804978 | MS.gene20839:intron | 15.0% |
| !!! | TTTTTAAATTTTGGATCATT+CGG | - | chr1.3:61803012-61803031 | MS.gene20839:intron | 15.0% |
| !! | AAACAAATTACCTTGATATT+TGG | + | chr1.3:61802948-61802967 | None:intergenic | 20.0% |
| !! | AAACTATGTGTTTAAAAACT+GGG | - | chr1.3:61802382-61802401 | MS.gene20839:CDS | 20.0% |
| !!! | GCTTTATGGTTTTTAAATTT+TGG | - | chr1.3:61803003-61803022 | MS.gene20839:intron | 20.0% |
| !!! | TACAAGATTTTTTGTTATTC+AGG | - | chr1.3:61804186-61804205 | MS.gene20839:CDS | 20.0% |
| !!! | TATTTTGTTTTTATGTGATC+TGG | - | chr1.3:61803118-61803137 | MS.gene20839:CDS | 20.0% |
| !!! | TTTGTCTTTTAATTTTAGCA+TGG | - | chr1.3:61803230-61803249 | MS.gene20839:CDS | 20.0% |
| ! | AGAAAGAAAGAAACAAATCA+AGG | + | chr1.3:61803178-61803197 | None:intergenic | 25.0% |
| ! | ATCTTCAACTAATCAATGTT+TGG | + | chr1.3:61803154-61803173 | None:intergenic | 25.0% |
| ! | CTATTCTATACCAAATATCA+AGG | - | chr1.3:61802935-61802954 | MS.gene20839:CDS | 25.0% |
| ! | CTTGATATTTGGTATAGAAT+AGG | + | chr1.3:61802937-61802956 | None:intergenic | 25.0% |
| ! | GAAACTATGTGTTTAAAAAC+TGG | - | chr1.3:61802381-61802400 | MS.gene20839:CDS | 25.0% |
| ! | GAAATTTGATTATTTAGCCA+GGG | - | chr1.3:61803729-61803748 | MS.gene20839:intron | 25.0% |
| ! | GCAATTACCTCAAATTTAAT+TGG | + | chr1.3:61804368-61804387 | None:intergenic | 25.0% |
| ! | GTTTGTAAATTGTTCATTCA+TGG | - | chr1.3:61803077-61803096 | MS.gene20839:intron | 25.0% |
| ! | TATGGATAGGTGTATTTATA+AGG | - | chr1.3:61803340-61803359 | MS.gene20839:CDS | 25.0% |
| ! | TCCATTTCAGAACATATAAT+AGG | + | chr1.3:61803653-61803672 | None:intergenic | 25.0% |
| ! | TGAAATTTGATTATTTAGCC+AGG | - | chr1.3:61803728-61803747 | MS.gene20839:intron | 25.0% |
| ! | TTCTCTATTATCTTCCAAAA+CGG | + | chr1.3:61802604-61802623 | None:intergenic | 25.0% |
| !! | ATAAAACTTTTTGGATAAGC+AGG | + | chr1.3:61804942-61804961 | None:intergenic | 25.0% |
| !! | ATTTAATTGGCTCAAAAAGT+AGG | + | chr1.3:61804355-61804374 | None:intergenic | 25.0% |
| !! | ATTTTCATTTAGATACCCAT+TGG | - | chr1.3:61802521-61802540 | MS.gene20839:CDS | 25.0% |
| !! | CTATAATCTGAATCTTTTGT+TGG | - | chr1.3:61803421-61803440 | MS.gene20839:CDS | 25.0% |
| !! | GAAAACAATGATTTTTGTGA+AGG | + | chr1.3:61802498-61802517 | None:intergenic | 25.0% |
| !! | TGATAAAGCGTTATTATGTA+GGG | - | chr1.3:61804299-61804318 | MS.gene20839:intron | 25.0% |
| !! | TTAGTTTCATATGCATTTTG+TGG | + | chr1.3:61803699-61803718 | None:intergenic | 25.0% |
| !! | TTGATAAAGCGTTATTATGT+AGG | - | chr1.3:61804298-61804317 | MS.gene20839:intron | 25.0% |
| !! | TTTTGAGCCAATTAAATTTG+AGG | - | chr1.3:61804358-61804377 | MS.gene20839:intron | 25.0% |
| !!! | AGATTTTTTGTTATTCAGGT+AGG | - | chr1.3:61804190-61804209 | MS.gene20839:CDS | 25.0% |
| !!! | AGTGTGATTTTTTACAACTA+TGG | - | chr1.3:61803525-61803544 | MS.gene20839:intron | 25.0% |
| !!! | ATTTTTTGTTATTCAGGTAG+GGG | - | chr1.3:61804192-61804211 | MS.gene20839:CDS | 25.0% |
| !!! | GATTTTTTGTTATTCAGGTA+GGG | - | chr1.3:61804191-61804210 | MS.gene20839:CDS | 25.0% |
| !!! | TACACATTTTTTTTTACCCA+GGG | - | chr1.3:61804486-61804505 | MS.gene20839:intron | 25.0% |
| !!! | TCCTATTATATGTTCTGAAA+TGG | - | chr1.3:61803649-61803668 | MS.gene20839:CDS | 25.0% |
| !!! | TGATTTGTTTCTTTCTTTCT+TGG | - | chr1.3:61803178-61803197 | MS.gene20839:CDS | 25.0% |
| !!! | TTGTTTTTACTTGTGCTTTA+TGG | - | chr1.3:61802989-61803008 | MS.gene20839:intron | 25.0% |
| !!! | TTTTAGTTGATTCTTAGAGA+TGG | - | chr1.3:61803051-61803070 | MS.gene20839:intron | 25.0% |
| AAAATCTGAGAAAATTCCTC+AGG | - | chr1.3:61803817-61803836 | MS.gene20839:intron | 30.0% | |
| ACACAAATAAATGCATGTGT+TGG | + | chr1.3:61805567-61805586 | None:intergenic | 30.0% | |
| ATCCTATATCCACCATTATT+TGG | + | chr1.3:61803881-61803900 | None:intergenic | 30.0% | |
| ATCGCTAGAGAAAAAAGAAT+TGG | - | chr1.3:61803790-61803809 | MS.gene20839:intron | 30.0% | |
| ATGTGAAGAATGTTTGGAAA+GGG | - | chr1.3:61802694-61802713 | MS.gene20839:CDS | 30.0% | |
| ATTTACCATGTGTTGGATTA+TGG | - | chr1.3:61803322-61803341 | MS.gene20839:CDS | 30.0% | |
| CACAAATAAATGCATGTGTT+GGG | + | chr1.3:61805566-61805585 | None:intergenic | 30.0% | |
| CCATGTTGCAAAAATCTTAA+AGG | - | chr1.3:61804857-61804876 | MS.gene20839:intron | 30.0% | |
| GGGAAACTCTTAAAACATTA+CGG | - | chr1.3:61803749-61803768 | MS.gene20839:intron | 30.0% | |
| TATGTTAGGTGATTGATCTT+TGG | - | chr1.3:61803561-61803580 | MS.gene20839:intron | 30.0% | |
| TTACTTGGTTATTGAGACAT+GGG | + | chr1.3:61804908-61804927 | None:intergenic | 30.0% | |
| TTTACTTGGTTATTGAGACA+TGG | + | chr1.3:61804909-61804928 | None:intergenic | 30.0% | |
| ! | ACTCATTTTCCAAAATGCTA+AGG | - | chr1.3:61802853-61802872 | MS.gene20839:CDS | 30.0% |
| ! | ATTTTCCAAAATGCTAAGGA+GGG | - | chr1.3:61802857-61802876 | MS.gene20839:CDS | 30.0% |
| ! | ATTTTGTGGAAATCAGATTC+TGG | + | chr1.3:61803685-61803704 | None:intergenic | 30.0% |
| ! | GCATTTTTGCGATTGAAATT+TGG | - | chr1.3:61803598-61803617 | MS.gene20839:intron | 30.0% |
| ! | TTGTTCATTCATGGTTTTTG+AGG | - | chr1.3:61803086-61803105 | MS.gene20839:intron | 30.0% |
| ! | TTTTGCATGTGAAGAATGTT+TGG | - | chr1.3:61802688-61802707 | MS.gene20839:CDS | 30.0% |
| !!! | AAGGTTTTAATTCATAACCC+TGG | - | chr1.3:61803359-61803378 | MS.gene20839:CDS | 30.0% |
| !!! | AGGTTTTAATTCATAACCCT+GGG | - | chr1.3:61803360-61803379 | MS.gene20839:CDS | 30.0% |
| !!! | ATTTTTTTTTACCCAGGGTT+TGG | - | chr1.3:61804491-61804510 | MS.gene20839:intron | 30.0% |
| !!! | CCTTTAAGATTTTTGCAACA+TGG | + | chr1.3:61804860-61804879 | None:intergenic | 30.0% |
| !!! | GTACACATTTTTTTTTACCC+AGG | - | chr1.3:61804485-61804504 | MS.gene20839:intron | 30.0% |
| !!! | TAATGTTTTAAGAGTTTCCC+TGG | + | chr1.3:61803749-61803768 | None:intergenic | 30.0% |
| AAAACCACCGTTATAGATGA+CGG | - | chr1.3:61802630-61802649 | MS.gene20839:CDS | 35.0% | |
| AACCGCAAACCTTGATATAA+GGG | + | chr1.3:61803297-61803316 | None:intergenic | 35.0% | |
| AAGCGTTATTATGTAGGGTT+CGG | - | chr1.3:61804304-61804323 | MS.gene20839:intron | 35.0% | |
| AAGCTACTATACACACCAAT+GGG | - | chr1.3:61805070-61805089 | MS.gene20839:CDS | 35.0% | |
| AGTCCTTAAAAAGGTTTAGC+AGG | - | chr1.3:61805530-61805549 | MS.gene20839:CDS | 35.0% | |
| ATTCACTTCTTCAAATGCAG+CGG | - | chr1.3:61803976-61803995 | MS.gene20839:CDS | 35.0% | |
| CAAAAAATCTTGTACCACTC+TGG | + | chr1.3:61804180-61804199 | None:intergenic | 35.0% | |
| CATGTCATGATCTCTTTGTA+TGG | + | chr1.3:61805302-61805321 | None:intergenic | 35.0% | |
| CATGTGAAGAATGTTTGGAA+AGG | - | chr1.3:61802693-61802712 | MS.gene20839:CDS | 35.0% | |
| CCAATATTAACATCCTAGCA+GGG | + | chr1.3:61805600-61805619 | None:intergenic | 35.0% | |
| CCTGCTAGGATGTTAATATT+GGG | - | chr1.3:61805598-61805617 | MS.gene20839:CDS | 35.0% | |
| CTACTTCCTGTGATAACATT+TGG | - | chr1.3:61804708-61804727 | MS.gene20839:intron | 35.0% | |
| CTGCTAGGATGTTAATATTG+GGG | - | chr1.3:61805599-61805618 | MS.gene20839:CDS | 35.0% | |
| CTTAAACTTGTCGAGACAAT+GGG | - | chr1.3:61803397-61803416 | MS.gene20839:CDS | 35.0% | |
| CTTAATATCTCAAGTGGATG+AGG | + | chr1.3:61805250-61805269 | None:intergenic | 35.0% | |
| CTTGGTGAAAATTTCTCATC+TGG | + | chr1.3:61805115-61805134 | None:intergenic | 35.0% | |
| GAATGCTCATTGCTTATGTT+AGG | - | chr1.3:61803547-61803566 | MS.gene20839:intron | 35.0% | |
| GCTGAGAATGATGAAAACAA+CGG | - | chr1.3:61802750-61802769 | MS.gene20839:CDS | 35.0% | |
| GTATATATGAGGCTGCTAAA+GGG | - | chr1.3:61804532-61804551 | MS.gene20839:intron | 35.0% | |
| TAATTGCAAGAAAATGCTCG+CGG | + | chr1.3:61804831-61804850 | None:intergenic | 35.0% | |
| TGCTAGGATGTTAATATTGG+GGG | - | chr1.3:61805600-61805619 | MS.gene20839:CDS | 35.0% | |
| TGGATATAGGATAAGTGCAA+CGG | - | chr1.3:61803889-61803908 | MS.gene20839:CDS | 35.0% | |
| TGTATCTAAAGATCCACCAA+TGG | + | chr1.3:61802424-61802443 | None:intergenic | 35.0% | |
| TGTGAAGAATGTTTGGAAAG+GGG | - | chr1.3:61802695-61802714 | MS.gene20839:CDS | 35.0% | |
| TTAAACTTGTCGAGACAATG+GGG | - | chr1.3:61803398-61803417 | MS.gene20839:CDS | 35.0% | |
| TTGCTGATATTGCAGACTAT+AGG | - | chr1.3:61804384-61804403 | MS.gene20839:intron | 35.0% | |
| TTTAATTCATAACCCTGGGT+GGG | - | chr1.3:61803364-61803383 | MS.gene20839:CDS | 35.0% | |
| TTTGTCAGAACCTAATGACA+CGG | - | chr1.3:61805183-61805202 | MS.gene20839:CDS | 35.0% | |
| ! | AAGATTTTTGCAACATGGTC+AGG | + | chr1.3:61804855-61804874 | None:intergenic | 35.0% |
| ! | AAGCCTGCTAAACCTTTTTA+AGG | + | chr1.3:61805536-61805555 | None:intergenic | 35.0% |
| ! | AGATTTTTGCAACATGGTCA+GGG | + | chr1.3:61804854-61804873 | None:intergenic | 35.0% |
| ! | CATTTTCCAAAATGCTAAGG+AGG | - | chr1.3:61802856-61802875 | MS.gene20839:CDS | 35.0% |
| ! | CTTTCTTTCTTGGCTTGAAT+GGG | - | chr1.3:61803188-61803207 | MS.gene20839:CDS | 35.0% |
| ! | GTTTTATCCAAAGCTAAACG+AGG | + | chr1.3:61803485-61803504 | None:intergenic | 35.0% |
| ! | TCTTTCTTTCTTGGCTTGAA+TGG | - | chr1.3:61803187-61803206 | MS.gene20839:CDS | 35.0% |
| ! | TGCATTTTGCCCTTATATCA+AGG | - | chr1.3:61803285-61803304 | MS.gene20839:CDS | 35.0% |
| ! | TTGATACCAGCATTGTTGTT+GGG | - | chr1.3:61805437-61805456 | MS.gene20839:CDS | 35.0% |
| ! | TTTCTTTCTTGGCTTGAATG+GGG | - | chr1.3:61803189-61803208 | MS.gene20839:CDS | 35.0% |
| ! | TTTTCGTCACTATTGTCGAA+GGG | - | chr1.3:61804409-61804428 | MS.gene20839:intron | 35.0% |
| ! | TTTTTCGTCACTATTGTCGA+AGG | - | chr1.3:61804408-61804427 | MS.gene20839:intron | 35.0% |
| !! | AGCCAAATAATGGTGGATAT+AGG | - | chr1.3:61803876-61803895 | MS.gene20839:CDS | 35.0% |
| !! | TTTTAATTCATAACCCTGGG+TGG | - | chr1.3:61803363-61803382 | MS.gene20839:CDS | 35.0% |
| !!! | TTTTCTCTCGCATCGATTTA+CGG | + | chr1.3:61805378-61805397 | None:intergenic | 35.0% |
| AATGCTAAGGAGGGTTTCTT+TGG | - | chr1.3:61802866-61802885 | MS.gene20839:CDS | 40.0% | |
| AATGTTTGGAAAGGGGAACA+AGG | - | chr1.3:61802702-61802721 | MS.gene20839:CDS | 40.0% | |
| AGAATCAGCAATTCACCCAT+TGG | + | chr1.3:61805088-61805107 | None:intergenic | 40.0% | |
| AGAGAAGCAAGAAGAAACCA+AGG | - | chr1.3:61803853-61803872 | MS.gene20839:CDS | 40.0% | |
| ATCCTCACCGTCATCTATAA+CGG | + | chr1.3:61802640-61802659 | None:intergenic | 40.0% | |
| ATGTTTGGAAAGGGGAACAA+GGG | - | chr1.3:61802703-61802722 | MS.gene20839:CDS | 40.0% | |
| ATTGTTCCTTCGATCTCCAT+TGG | - | chr1.3:61802405-61802424 | MS.gene20839:CDS | 40.0% | |
| CAACCGCAAACCTTGATATA+AGG | + | chr1.3:61803298-61803317 | None:intergenic | 40.0% | |
| CAAGGGAATCATGAAAGAGA+AGG | - | chr1.3:61802720-61802739 | MS.gene20839:CDS | 40.0% | |
| CAGGAAGAGAGTCCTTAAAA+AGG | - | chr1.3:61805521-61805540 | MS.gene20839:CDS | 40.0% | |
| CATATATACCTCTGTGCACA+AGG | + | chr1.3:61804521-61804540 | None:intergenic | 40.0% | |
| CCATGTGTTGGATTATGGAT+AGG | - | chr1.3:61803327-61803346 | MS.gene20839:CDS | 40.0% | |
| CCCAATATTAACATCCTAGC+AGG | + | chr1.3:61805601-61805620 | None:intergenic | 40.0% | |
| CCCTGCTAGGATGTTAATAT+TGG | - | chr1.3:61805597-61805616 | MS.gene20839:CDS | 40.0% | |
| CCTATCCATAATCCAACACA+TGG | + | chr1.3:61803330-61803349 | None:intergenic | 40.0% | |
| CGGTCACTTAATATCTCAAG+TGG | + | chr1.3:61805256-61805275 | None:intergenic | 40.0% | |
| CTCCATATCCATAAGCAGAT+CGG | + | chr1.3:61805276-61805295 | None:intergenic | 40.0% | |
| GAAACCAAGGAGCCAAATAA+TGG | - | chr1.3:61803866-61803885 | MS.gene20839:CDS | 40.0% | |
| GAAGCTACTATACACACCAA+TGG | - | chr1.3:61805069-61805088 | MS.gene20839:intron | 40.0% | |
| GACACTCTACTTGAAAAGCT+TGG | - | chr1.3:61804756-61804775 | MS.gene20839:intron | 40.0% | |
| GATACCCATTGGAATCTCTA+TGG | - | chr1.3:61802532-61802551 | MS.gene20839:CDS | 40.0% | |
| GCTGCATTTGAAGAAGTGAA+TGG | + | chr1.3:61803977-61803996 | None:intergenic | 40.0% | |
| GCTTAAACTTGTCGAGACAA+TGG | - | chr1.3:61803396-61803415 | MS.gene20839:CDS | 40.0% | |
| GGTATATATGAGGCTGCTAA+AGG | - | chr1.3:61804531-61804550 | MS.gene20839:intron | 40.0% | |
| GTCTTCATTATGCCAGAGAA+TGG | + | chr1.3:61805502-61805521 | None:intergenic | 40.0% | |
| GTTCAAGAACGTCAACTTTG+CGG | + | chr1.3:61805224-61805243 | None:intergenic | 40.0% | |
| GTTGATACCAGCATTGTTGT+TGG | - | chr1.3:61805436-61805455 | MS.gene20839:CDS | 40.0% | |
| TACGGATCTGGTTAAGTTCT+TGG | + | chr1.3:61805360-61805379 | None:intergenic | 40.0% | |
| TAGGTGATTGATCTTTGGCT+TGG | - | chr1.3:61803566-61803585 | MS.gene20839:intron | 40.0% | |
| TATGCTCAGATGTCACACTT+GGG | - | chr1.3:61802903-61802922 | MS.gene20839:CDS | 40.0% | |
| TCAAGTTTGTGATACTTGCG+CGG | - | chr1.3:61802782-61802801 | MS.gene20839:CDS | 40.0% | |
| TCTTTACTTTCGACTTCCTG+AGG | + | chr1.3:61803836-61803855 | None:intergenic | 40.0% | |
| TGCCCTTATATCAAGGTTTG+CGG | - | chr1.3:61803292-61803311 | MS.gene20839:CDS | 40.0% | |
| TGTTATCACAGGAAGTAGAG+AGG | + | chr1.3:61804706-61804725 | None:intergenic | 40.0% | |
| TTAAGTGACCGATCTGCTTA+TGG | - | chr1.3:61805265-61805284 | MS.gene20839:CDS | 40.0% | |
| TTCTCTGGCATAATGAAGAC+AGG | - | chr1.3:61805502-61805521 | MS.gene20839:CDS | 40.0% | |
| TTGCGCAATTTACCATGTGT+TGG | - | chr1.3:61803315-61803334 | MS.gene20839:CDS | 40.0% | |
| TTTAGGTGAGCATGAACTTC+TGG | + | chr1.3:61804576-61804595 | None:intergenic | 40.0% | |
| TTTCGTCACTATTGTCGAAG+GGG | - | chr1.3:61804410-61804429 | MS.gene20839:intron | 40.0% | |
| ! | AGAAACCCTCCTTAGCATTT+TGG | + | chr1.3:61802865-61802884 | None:intergenic | 40.0% |
| ! | AGGTGATTGATCTTTGGCTT+GGG | - | chr1.3:61803567-61803586 | MS.gene20839:intron | 40.0% |
| ! | GTGTCATTAGGTTCTGACAA+AGG | + | chr1.3:61805184-61805203 | None:intergenic | 40.0% |
| ! | TCTTAGTCCTCGTTTAGCTT+TGG | - | chr1.3:61803475-61803494 | MS.gene20839:CDS | 40.0% |
| ! | TGTGCACAGAGGTATATATG+AGG | - | chr1.3:61804521-61804540 | MS.gene20839:intron | 40.0% |
| ! | TTATAGATGACGGTGAGGAT+GGG | - | chr1.3:61802640-61802659 | MS.gene20839:CDS | 40.0% |
| ! | TTTTTGGATAAGCAGGAGTG+CGG | + | chr1.3:61804935-61804954 | None:intergenic | 40.0% |
| !! | TTGATCTTTGGCTTGGGATT+CGG | - | chr1.3:61803573-61803592 | MS.gene20839:intron | 40.0% |
| !!! | TGTTGCTTTTTTTCCCTGCT+AGG | - | chr1.3:61805584-61805603 | MS.gene20839:CDS | 40.0% |
| AATCTCTATGGCCACAACGA+CGG | - | chr1.3:61802544-61802563 | MS.gene20839:CDS | 45.0% | |
| ACAGGAAGTAGAGAGGTGAT+TGG | + | chr1.3:61804699-61804718 | None:intergenic | 45.0% | |
| ACCAAGGAGCCAAATAATGG+TGG | - | chr1.3:61803869-61803888 | MS.gene20839:CDS | 45.0% | |
| AGAAAAGACGCAAGGTATGG+TGG | - | chr1.3:61805392-61805411 | MS.gene20839:CDS | 45.0% | |
| AGATATAGACCACTGCCTTG+CGG | + | chr1.3:61805151-61805170 | None:intergenic | 45.0% | |
| ATCTGCGATGATAACCAGAG+TGG | - | chr1.3:61804163-61804182 | MS.gene20839:CDS | 45.0% | |
| ATGCTCAGATGTCACACTTG+GGG | - | chr1.3:61802904-61802923 | MS.gene20839:CDS | 45.0% | |
| CAAGGGAATGTCCAGTGAAA+CGG | + | chr1.3:61804623-61804642 | None:intergenic | 45.0% | |
| CATGCTCACCTAAAATCTCG+AGG | - | chr1.3:61804582-61804601 | MS.gene20839:intron | 45.0% | |
| CGATCTGCTTATGGATATGG+AGG | - | chr1.3:61805274-61805293 | MS.gene20839:CDS | 45.0% | |
| CTTCTGCGTTCATCATGTCA+AGG | + | chr1.3:61804024-61804043 | None:intergenic | 45.0% | |
| GACCGATCTGCTTATGGATA+TGG | - | chr1.3:61805271-61805290 | MS.gene20839:CDS | 45.0% | |
| GAGAGAAAAGACGCAAGGTA+TGG | - | chr1.3:61805389-61805408 | MS.gene20839:CDS | 45.0% | |
| GCATTATAATTGCCTGCACG+TGG | + | chr1.3:61804794-61804813 | None:intergenic | 45.0% | |
| GGGGAACCAAATGTTATCAC+AGG | + | chr1.3:61804717-61804736 | None:intergenic | 45.0% | |
| GTATGCTCAGATGTCACACT+TGG | - | chr1.3:61802902-61802921 | MS.gene20839:CDS | 45.0% | |
| GTGGCCATAGAGATTCCAAT+GGG | + | chr1.3:61802539-61802558 | None:intergenic | 45.0% | |
| GTTCGGAGTCATTAGCATCT+TGG | - | chr1.3:61804321-61804340 | MS.gene20839:intron | 45.0% | |
| TGACATGATGAACGCAGAAG+TGG | - | chr1.3:61804024-61804043 | MS.gene20839:CDS | 45.0% | |
| TGTGGCCATAGAGATTCCAA+TGG | + | chr1.3:61802540-61802559 | None:intergenic | 45.0% | |
| TTATGCCAGAGAATGGTGAC+TGG | + | chr1.3:61805495-61805514 | None:intergenic | 45.0% | |
| TTCGTCACTATTGTCGAAGG+GGG | - | chr1.3:61804411-61804430 | MS.gene20839:intron | 45.0% | |
| ! | AGCTTCTTGTCCGTGTCATT+AGG | + | chr1.3:61805196-61805215 | None:intergenic | 45.0% |
| ! | ATACCAGCATTGTTGTTGGG+AGG | - | chr1.3:61805440-61805459 | MS.gene20839:CDS | 45.0% |
| ! | CACGAGAACCTCGAGATTTT+AGG | + | chr1.3:61804593-61804612 | None:intergenic | 45.0% |
| ! | GTTATAGATGACGGTGAGGA+TGG | - | chr1.3:61802639-61802658 | MS.gene20839:CDS | 45.0% |
| ! | TCCACCATTATTTGGCTCCT+TGG | + | chr1.3:61803873-61803892 | None:intergenic | 45.0% |
| !! | TACTGATTCAGTGACAGCAG+TGG | - | chr1.3:61804063-61804082 | MS.gene20839:CDS | 45.0% |
| !! | TCCATGGTATCGGTCAGTAT+CGG | - | chr1.3:61805463-61805482 | MS.gene20839:CDS | 45.0% |
| !! | TTTTGGATAAGCAGGAGTGC+GGG | + | chr1.3:61804934-61804953 | None:intergenic | 45.0% |
| !! | GATATATAAATTATATTATT+TGG | - | chr1.3:61804235-61804254 | MS.gene20839:CDS | 5.0% |
| AACGTTCTGTTCCGTCGTTG+TGG | + | chr1.3:61802558-61802577 | None:intergenic | 50.0% | |
| ACATTCCCTTGGTGGAAGCT+TGG | - | chr1.3:61804632-61804651 | MS.gene20839:intron | 50.0% | |
| ACTTCTTCAAATGCAGCGGC+TGG | - | chr1.3:61803980-61803999 | MS.gene20839:CDS | 50.0% | |
| AGAACGTCAACTTTGCGGCT+CGG | + | chr1.3:61805219-61805238 | None:intergenic | 50.0% | |
| AGCCATAATCTTCTGCCGCA+AGG | - | chr1.3:61805133-61805152 | MS.gene20839:CDS | 50.0% | |
| AGGATGGGCAGAGAGAGAAT+TGG | - | chr1.3:61802655-61802674 | MS.gene20839:CDS | 50.0% | |
| ATGCTGGTATCAACTCGTCG+CGG | + | chr1.3:61805430-61805449 | None:intergenic | 50.0% | |
| ATTCATAACCCTGGGTGGGT+AGG | - | chr1.3:61803368-61803387 | MS.gene20839:CDS | 50.0% | |
| CACAAGGACATCCAAACCCT+GGG | + | chr1.3:61804505-61804524 | None:intergenic | 50.0% | |
| CGCAGAAGTGGCATCTTTGA+TGG | - | chr1.3:61804036-61804055 | MS.gene20839:CDS | 50.0% | |
| CGTGCAACTTTCCGTTTCAC+TGG | - | chr1.3:61804609-61804628 | MS.gene20839:intron | 50.0% | |
| CGTTTCACTGGACATTCCCT+TGG | - | chr1.3:61804621-61804640 | MS.gene20839:intron | 50.0% | |
| CTCACCGTCATCTATAACGG+TGG | + | chr1.3:61802637-61802656 | None:intergenic | 50.0% | |
| GATCCACCAATGGAGATCGA+AGG | + | chr1.3:61802414-61802433 | None:intergenic | 50.0% | |
| GATGCGAGAGAAAAGACGCA+AGG | - | chr1.3:61805384-61805403 | MS.gene20839:CDS | 50.0% | |
| GATGTCACACTTGGGGAGTT+TGG | - | chr1.3:61802911-61802930 | MS.gene20839:CDS | 50.0% | |
| GGATGGGCAGAGAGAGAATT+GGG | - | chr1.3:61802656-61802675 | MS.gene20839:CDS | 50.0% | |
| GGCAAAGGAGGAAGTAAAGC+AGG | - | chr1.3:61804090-61804109 | MS.gene20839:CDS | 50.0% | |
| GTGCAGATAAGATGCAGCAG+AGG | + | chr1.3:61803933-61803952 | None:intergenic | 50.0% | |
| GTTCCTTCGATCTCCATTGG+TGG | - | chr1.3:61802408-61802427 | MS.gene20839:CDS | 50.0% | |
| TAGTGCCAAGCTTCCACCAA+GGG | + | chr1.3:61804640-61804659 | None:intergenic | 50.0% | |
| TCGCAGATGAACCATTCGCA+AGG | + | chr1.3:61804151-61804170 | None:intergenic | 50.0% | |
| TCGTCACTATTGTCGAAGGG+GGG | - | chr1.3:61804412-61804431 | MS.gene20839:intron | 50.0% | |
| TGCCTTGCGGCAGAAGATTA+TGG | + | chr1.3:61805138-61805157 | None:intergenic | 50.0% | |
| TGCGGCAGAAGATTATGGCT+TGG | + | chr1.3:61805133-61805152 | None:intergenic | 50.0% | |
| TGTTGGGAGGTCCATGGTAT+CGG | - | chr1.3:61805453-61805472 | MS.gene20839:CDS | 50.0% | |
| TTCACTGGACATTCCCTTGG+TGG | - | chr1.3:61804624-61804643 | MS.gene20839:intron | 50.0% | |
| TTCAGTGACAGCAGTGGTTG+CGG | - | chr1.3:61804069-61804088 | MS.gene20839:CDS | 50.0% | |
| TTGGATGTCCTTGTGCACAG+AGG | - | chr1.3:61804510-61804529 | MS.gene20839:intron | 50.0% | |
| ! | CACCGTTATAGATGACGGTG+AGG | - | chr1.3:61802635-61802654 | MS.gene20839:CDS | 50.0% |
| ! | CATTGTTGTTGGGAGGTCCA+TGG | - | chr1.3:61805447-61805466 | MS.gene20839:CDS | 50.0% |
| ! | CTTTCTTGGCTTGAATGGGG+TGG | - | chr1.3:61803192-61803211 | MS.gene20839:CDS | 50.0% |
| !! | CTCGCATCGATTTACGGATC+TGG | + | chr1.3:61805372-61805391 | None:intergenic | 50.0% |
| AAGCGAAAACCTACCCACCC+AGG | + | chr1.3:61803380-61803399 | None:intergenic | 55.0% | |
| AATCTTCTGCCGCAAGGCAG+TGG | - | chr1.3:61805139-61805158 | MS.gene20839:CDS | 55.0% | |
| ACTCGTCGCGGTAGTACAAG+AGG | + | chr1.3:61805418-61805437 | None:intergenic | 55.0% | |
| AGCGAAAACCTACCCACCCA+GGG | + | chr1.3:61803379-61803398 | None:intergenic | 55.0% | |
| AGTGTCGCCTCCACACATGA+TGG | + | chr1.3:61804742-61804761 | None:intergenic | 55.0% | |
| CAACGCCAGTCACCATTCTC+TGG | - | chr1.3:61805487-61805506 | MS.gene20839:CDS | 55.0% | |
| CACCGCACTTACGGTAGATG+CGG | + | chr1.3:61802463-61802482 | None:intergenic | 55.0% | |
| CACCGCATCTACCGTAAGTG+CGG | - | chr1.3:61802458-61802477 | MS.gene20839:CDS | 55.0% | |
| CAGAGAATGGTGACTGGCGT+TGG | + | chr1.3:61805489-61805508 | None:intergenic | 55.0% | |
| CGACGGAACAGAACGTTCAG+TGG | - | chr1.3:61802561-61802580 | MS.gene20839:CDS | 55.0% | |
| CTCGTTCGTCACCTTGCGAA+TGG | - | chr1.3:61804137-61804156 | MS.gene20839:CDS | 55.0% | |
| GCACAAGGACATCCAAACCC+TGG | + | chr1.3:61804506-61804525 | None:intergenic | 55.0% | |
| GCATCTACCGTAAGTGCGGT+GGG | - | chr1.3:61802462-61802481 | MS.gene20839:CDS | 55.0% | |
| GCCGATACTGACCGATACCA+TGG | + | chr1.3:61805467-61805486 | None:intergenic | 55.0% | |
| GGACCTCCCAACAACAATGC+TGG | + | chr1.3:61805446-61805465 | None:intergenic | 55.0% | |
| GGTTCCCCTTCCATCATGTG+TGG | - | chr1.3:61804729-61804748 | MS.gene20839:intron | 55.0% | |
| GTAGTGCCAAGCTTCCACCA+AGG | + | chr1.3:61804641-61804660 | None:intergenic | 55.0% | |
| TCAAATGCAGCGGCTGGTGA+AGG | - | chr1.3:61803986-61804005 | MS.gene20839:CDS | 55.0% | |
| TCCCCTTCCATCATGTGTGG+AGG | - | chr1.3:61804732-61804751 | MS.gene20839:intron | 55.0% | |
| TTCACGACCCACCGCACTTA+CGG | + | chr1.3:61802472-61802491 | None:intergenic | 55.0% | |
| ! | CAGGAGTGCGGGACTTTACT+TGG | + | chr1.3:61804923-61804942 | None:intergenic | 55.0% |
| ! | CGCCTCCACACATGATGGAA+GGG | + | chr1.3:61804737-61804756 | None:intergenic | 55.0% |
| ! | GCCTCCACACATGATGGAAG+GGG | + | chr1.3:61804736-61804755 | None:intergenic | 55.0% |
| ! | TCGCCTCCACACATGATGGA+AGG | + | chr1.3:61804738-61804757 | None:intergenic | 55.0% |
| AGCAGTGGTTGCGGCAAAGG+AGG | - | chr1.3:61804078-61804097 | MS.gene20839:CDS | 60.0% | |
| ATTGCCTGCACGTGGCTTCG+CGG | + | chr1.3:61804786-61804805 | None:intergenic | 60.0% | |
| CGCACTTACGGTAGATGCGG+TGG | + | chr1.3:61802460-61802479 | None:intergenic | 60.0% | |
| CGCATCTACCGTAAGTGCGG+TGG | - | chr1.3:61802461-61802480 | MS.gene20839:CDS | 60.0% | |
| GACAGCAGTGGTTGCGGCAA+AGG | - | chr1.3:61804075-61804094 | MS.gene20839:CDS | 60.0% | |
| ! | GTCTCTCGACGACGCCGTTT+TGG | - | chr1.3:61802587-61802606 | MS.gene20839:CDS | 60.0% |
| CCTGCACGTGGCTTCGCGGC+AGG | + | chr1.3:61804782-61804801 | None:intergenic | 75.0% | |
| CCTGCCGCGAAGCCACGTGC+AGG | - | chr1.3:61804779-61804798 | MS.gene20839:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 61802378 | 61805648 | 61802378 | ID=MS.gene20839 |
| chr1.3 | mRNA | 61802378 | 61805648 | 61802378 | ID=MS.gene20839.t1;Parent=MS.gene20839 |
| chr1.3 | exon | 61805070 | 61805648 | 61805070 | ID=MS.gene20839.t1.exon1;Parent=MS.gene20839.t1 |
| chr1.3 | CDS | 61805070 | 61805648 | 61805070 | ID=cds.MS.gene20839.t1;Parent=MS.gene20839.t1 |
| chr1.3 | exon | 61803819 | 61804280 | 61803819 | ID=MS.gene20839.t1.exon2;Parent=MS.gene20839.t1 |
| chr1.3 | CDS | 61803819 | 61804280 | 61803819 | ID=cds.MS.gene20839.t1;Parent=MS.gene20839.t1 |
| chr1.3 | exon | 61803647 | 61803706 | 61803647 | ID=MS.gene20839.t1.exon3;Parent=MS.gene20839.t1 |
| chr1.3 | CDS | 61803647 | 61803706 | 61803647 | ID=cds.MS.gene20839.t1;Parent=MS.gene20839.t1 |
| chr1.3 | exon | 61803103 | 61803519 | 61803103 | ID=MS.gene20839.t1.exon4;Parent=MS.gene20839.t1 |
| chr1.3 | CDS | 61803103 | 61803519 | 61803103 | ID=cds.MS.gene20839.t1;Parent=MS.gene20839.t1 |
| chr1.3 | exon | 61802378 | 61802956 | 61802378 | ID=MS.gene20839.t1.exon5;Parent=MS.gene20839.t1 |
| chr1.3 | CDS | 61802378 | 61802956 | 61802378 | ID=cds.MS.gene20839.t1;Parent=MS.gene20839.t1 |
| Gene Sequence |
| Protein sequence |
