Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21790.t1 | XP_003610789.2 | 92.1 | 874 | 51 | 2 | 1 | 856 | 1 | 874 | 0.00E+00 | 1584.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21790.t1 | G7K528 | 92.1 | 874 | 51 | 2 | 1 | 856 | 1 | 874 | 0.0e+00 | 1584.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene21790 | 0.833843 | 4.22E-56 | -1.69E-46 |
| MS.gene049369 | MS.gene21790 | 0.862903 | 3.64E-64 | -1.69E-46 |
| MS.gene049396 | MS.gene21790 | 0.843144 | 1.68E-58 | -1.69E-46 |
| MS.gene05316 | MS.gene21790 | 0.831673 | 1.46E-55 | -1.69E-46 |
| MS.gene053449 | MS.gene21790 | 0.809676 | 1.68E-50 | -1.69E-46 |
| MS.gene053758 | MS.gene21790 | 0.80062 | 1.32E-48 | -1.69E-46 |
| MS.gene053813 | MS.gene21790 | 0.82262 | 2.15E-53 | -1.69E-46 |
| MS.gene054486 | MS.gene21790 | 0.841644 | 4.19E-58 | -1.69E-46 |
| MS.gene055909 | MS.gene21790 | 0.826257 | 3.00E-54 | -1.69E-46 |
| MS.gene055911 | MS.gene21790 | 0.824593 | 7.42E-54 | -1.69E-46 |
| MS.gene056422 | MS.gene21790 | 0.843594 | 1.27E-58 | -1.69E-46 |
| MS.gene056511 | MS.gene21790 | 0.811188 | 7.93E-51 | -1.69E-46 |
| MS.gene057537 | MS.gene21790 | 0.809346 | 1.98E-50 | -1.69E-46 |
| MS.gene057610 | MS.gene21790 | 0.825145 | 5.50E-54 | -1.69E-46 |
| MS.gene057668 | MS.gene21790 | 0.804915 | 1.72E-49 | -1.69E-46 |
| MS.gene057926 | MS.gene21790 | 0.800995 | 1.11E-48 | -1.69E-46 |
| MS.gene057927 | MS.gene21790 | 0.804988 | 1.66E-49 | -1.69E-46 |
| MS.gene058072 | MS.gene21790 | 0.847459 | 1.14E-59 | -1.69E-46 |
| MS.gene058075 | MS.gene21790 | 0.934682 | 2.76E-96 | -1.69E-46 |
| MS.gene058459 | MS.gene21790 | 0.824566 | 7.53E-54 | -1.69E-46 |
| MS.gene059368 | MS.gene21790 | 0.80637 | 8.50E-50 | -1.69E-46 |
| MS.gene059587 | MS.gene21790 | 0.807413 | 5.12E-50 | -1.69E-46 |
| MS.gene059674 | MS.gene21790 | 0.868694 | 5.40E-66 | -1.69E-46 |
| MS.gene059711 | MS.gene21790 | 0.838284 | 3.15E-57 | -1.69E-46 |
| MS.gene059807 | MS.gene21790 | 0.894026 | 3.63E-75 | -1.69E-46 |
| MS.gene060495 | MS.gene21790 | 0.808246 | 3.40E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene21790 | 0.806384 | 8.45E-50 | -1.69E-46 |
| MS.gene061041 | MS.gene21790 | 0.803666 | 3.13E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21790.t1 | MTR_5g007040 | 92.105 | 874 | 51 | 2 | 1 | 856 | 1 | 874 | 0.0 | 1644 |
| MS.gene21790.t1 | MTR_6g046940 | 82.038 | 746 | 58 | 6 | 1 | 743 | 1 | 673 | 0.0 | 1202 |
| MS.gene21790.t1 | MTR_1g075280 | 35.315 | 286 | 141 | 9 | 91 | 362 | 168 | 423 | 1.18e-28 | 121 |
| MS.gene21790.t1 | MTR_1g075280 | 35.315 | 286 | 141 | 9 | 91 | 362 | 207 | 462 | 2.12e-28 | 121 |
| MS.gene21790.t1 | MTR_1g075280 | 48.077 | 104 | 45 | 2 | 9 | 103 | 1 | 104 | 5.49e-20 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21790.t1 | AT5G43630 | 30.700 | 671 | 346 | 24 | 31 | 619 | 25 | 658 | 7.62e-58 | 213 |
| MS.gene21790.t1 | AT5G43630 | 45.813 | 203 | 95 | 5 | 668 | 856 | 630 | 831 | 3.85e-42 | 166 |
| MS.gene21790.t1 | AT5G43630 | 30.700 | 671 | 346 | 24 | 31 | 619 | 25 | 658 | 7.62e-58 | 213 |
| MS.gene21790.t1 | AT5G43630 | 45.813 | 203 | 95 | 5 | 668 | 856 | 630 | 831 | 3.85e-42 | 166 |
| MS.gene21790.t1 | AT5G43630 | 30.700 | 671 | 346 | 24 | 31 | 619 | 25 | 658 | 7.62e-58 | 213 |
| MS.gene21790.t1 | AT5G43630 | 45.813 | 203 | 95 | 5 | 668 | 856 | 630 | 831 | 3.85e-42 | 166 |
| MS.gene21790.t1 | AT5G43630 | 30.700 | 671 | 346 | 24 | 31 | 619 | 25 | 658 | 7.62e-58 | 213 |
| MS.gene21790.t1 | AT5G43630 | 45.813 | 203 | 95 | 5 | 668 | 856 | 630 | 831 | 3.85e-42 | 166 |
Find 151 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAAAACCACTGGATTT+TGG | 0.157505 | 5.2:-1589066 | None:intergenic |
| GACTCCCTGGATTGTCTTTC+CGG | 0.170908 | 5.2:-1589023 | None:intergenic |
| ATCTCTGGAAAACAGGTTAT+TGG | 0.246005 | 5.2:-1588712 | None:intergenic |
| AAATTTAAAGGTTCAATATT+AGG | 0.247779 | 5.2:-1588814 | None:intergenic |
| GAGCCTTTGTATTCAGTTAC+AGG | 0.247973 | 5.2:-1587974 | None:intergenic |
| TTCTTGTTTAATGTAGGATT+TGG | 0.271583 | 5.2:-1588383 | None:intergenic |
| AGATGAACCTAAACCTATTA+TGG | 0.280334 | 5.2:+1587883 | MS.gene21790:CDS |
| AACCATGCATTATGAAGATT+TGG | 0.280576 | 5.2:-1588499 | None:intergenic |
| AAGAGTTCACTATCAGTCTT+TGG | 0.297369 | 5.2:-1587476 | None:intergenic |
| TGAACATATACTTCAACTTT+TGG | 0.308816 | 5.2:-1589107 | None:intergenic |
| ATCATAATTTATGCCTTCAT+TGG | 0.310698 | 5.2:-1587933 | None:intergenic |
| TTAGTTTGGTCTTCAGATAA+AGG | 0.312924 | 5.2:+1587605 | MS.gene21790:CDS |
| AAACATTTAATGCACATAAA+AGG | 0.319178 | 5.2:-1589378 | None:intergenic |
| TGCGCCTGCGGCTTGGGAAG+TGG | 0.328935 | 5.2:+1589997 | MS.gene21790:CDS |
| AAGTGAGCTAGAAGATCTTC+AGG | 0.335373 | 5.2:+1589320 | MS.gene21790:CDS |
| TTTACTTGTGAGGTACATTC+TGG | 0.345896 | 5.2:-1589234 | None:intergenic |
| ATCCTCTTTCCGAATTAGTT+TGG | 0.351970 | 5.2:+1587591 | MS.gene21790:CDS |
| CTTCTCTAAACTATGTTTCT+CGG | 0.353124 | 5.2:-1590197 | None:intergenic |
| TCATTGGGAGGCCTCCTTGA+TGG | 0.355832 | 5.2:-1587917 | None:intergenic |
| CTTGGCGTTTATAACGTCAT+TGG | 0.358095 | 5.2:-1589598 | None:intergenic |
| AAGAAAGCTCATTCAGAAAC+TGG | 0.360229 | 5.2:+1588401 | MS.gene21790:CDS |
| ATTGAAAATGCCGTTTGTTA+AGG | 0.362224 | 5.2:-1588741 | None:intergenic |
| AACATTTCTTAAATCATTCT+CGG | 0.363507 | 5.2:-1588062 | None:intergenic |
| ATCTGAAGACCAAACTAATT+CGG | 0.365396 | 5.2:-1587600 | None:intergenic |
| TACCTCAAGAAAATCTTGAT+TGG | 0.368233 | 5.2:-1590287 | None:intergenic |
| GAAGGCATAAATTATGATAC+TGG | 0.375310 | 5.2:+1587938 | MS.gene21790:CDS |
| CCATGTACCGTGTTATTACT+TGG | 0.376113 | 5.2:-1588676 | None:intergenic |
| CCGGTCTTGCAGTCCCTTCA+TGG | 0.379731 | 5.2:-1589479 | None:intergenic |
| TTCAAACTTGTGCCTTAGTA+AGG | 0.384377 | 5.2:+1588888 | MS.gene21790:CDS |
| AAGACAATCCAGGGAGTCTA+TGG | 0.386401 | 5.2:+1589028 | MS.gene21790:CDS |
| CGGCTTGGGAAGTGGGAAGA+AGG | 0.393299 | 5.2:+1590005 | MS.gene21790:CDS |
| ATCGACAATGAAGAAACTTC+TGG | 0.405788 | 5.2:+1588358 | MS.gene21790:CDS |
| TATCCAAGTTTGAAGAATAT+AGG | 0.406340 | 5.2:+1588607 | MS.gene21790:CDS |
| GCAATTGATCTCTGGAAAAC+AGG | 0.406472 | 5.2:-1588719 | None:intergenic |
| TCTCAACAGCAGTTGATGAT+TGG | 0.410588 | 5.2:+1588319 | MS.gene21790:CDS |
| ATTCTCTGCTTTCTTTCTCT+CGG | 0.414942 | 5.2:-1588992 | None:intergenic |
| ATTTGCATCCCCGTCTGATA+AGG | 0.424303 | 5.2:-1588206 | None:intergenic |
| GCGCCTGCGGCTTGGGAAGT+GGG | 0.434123 | 5.2:+1589998 | MS.gene21790:CDS |
| TATAACATCTCCGTCGAGAT+TGG | 0.435268 | 5.2:+1589695 | MS.gene21790:CDS |
| CTCAACAGCAGTTGATGATT+GGG | 0.436500 | 5.2:+1588320 | MS.gene21790:CDS |
| TTGTTAAGGCAATTGATCTC+TGG | 0.437536 | 5.2:-1588727 | None:intergenic |
| CTTTCTCTCGGATGGTGCGT+TGG | 0.438518 | 5.2:-1588980 | None:intergenic |
| TAGTAAGGACAAGGAAGAAA+TGG | 0.439540 | 5.2:+1588903 | MS.gene21790:CDS |
| TCTGCTTTCTTTCTCTCGGA+TGG | 0.440615 | 5.2:-1588988 | None:intergenic |
| CTCGACGGAGATGTTATACT+AGG | 0.443437 | 5.2:-1589690 | None:intergenic |
| CCAAGTAATAACACGGTACA+TGG | 0.445145 | 5.2:+1588676 | MS.gene21790:CDS |
| GAAGAAGGGCTTGGAGGAAC+TGG | 0.447576 | 5.2:+1590020 | MS.gene21790:CDS |
| TACAAAGGCTCTGGTGCTGC+AGG | 0.449475 | 5.2:+1587986 | MS.gene21790:CDS |
| CTCATCTTCCTCAAAACCAC+TGG | 0.450177 | 5.2:-1589073 | None:intergenic |
| AACGACACTACCTTGCGTTA+AGG | 0.450935 | 5.2:+1588114 | MS.gene21790:CDS |
| AATCTCTCTCAGTGAAAGTA+GGG | 0.456729 | 5.2:+1590230 | MS.gene21790:CDS |
| TGTAAATTCATATGAAGGTC+CGG | 0.457030 | 5.2:+1589347 | MS.gene21790:CDS |
| TGATGCATTGCATTCTATCT+TGG | 0.457149 | 5.2:-1589616 | None:intergenic |
| TCATAATTTATGCCTTCATT+GGG | 0.458322 | 5.2:-1587932 | None:intergenic |
| GTTCCTATATTCTTCAAACT+TGG | 0.462575 | 5.2:-1588610 | None:intergenic |
| TTACATGGAGAATGCAAAAC+AGG | 0.463584 | 5.2:-1588142 | None:intergenic |
| TGAGCTTTCTTGTTTAATGT+AGG | 0.464135 | 5.2:-1588389 | None:intergenic |
| AAATCTCTCTCAGTGAAAGT+AGG | 0.468291 | 5.2:+1590229 | MS.gene21790:CDS |
| TTTCTTCCTTGTCCTTACTA+AGG | 0.468637 | 5.2:-1588900 | None:intergenic |
| CTTCCCACTTCCCAAGCCGC+AGG | 0.470117 | 5.2:-1590001 | None:intergenic |
| TTTATCAGCAAAGCTTGAAT+CGG | 0.474036 | 5.2:-1587645 | None:intergenic |
| TGATGCTGAAAACAAATATG+AGG | 0.475122 | 5.2:+1588084 | MS.gene21790:CDS |
| ATTCACAAACTCGGAGCAAA+TGG | 0.479748 | 5.2:+1589155 | MS.gene21790:CDS |
| GGGAAGTGGGAAGAAGGGCT+TGG | 0.479926 | 5.2:+1590011 | MS.gene21790:CDS |
| CTTCAAACTTGGATAATACA+TGG | 0.480740 | 5.2:-1588599 | None:intergenic |
| ACGTTTGCAAGGAGAATTGT+TGG | 0.486585 | 5.2:+1589183 | MS.gene21790:CDS |
| CGAGTTATCCATAGACTCCC+TGG | 0.491615 | 5.2:-1589036 | None:intergenic |
| TCAAGGAGGCCTCCCAATGA+AGG | 0.494185 | 5.2:+1587920 | MS.gene21790:CDS |
| TTGAAAGCTGTAACAGTGCT+AGG | 0.495098 | 5.2:+1588266 | MS.gene21790:CDS |
| TGAATTGCTGTCATTATCCA+TGG | 0.498749 | 5.2:-1588239 | None:intergenic |
| GATATCAGATCTTCTTCAGA+TGG | 0.499851 | 5.2:-1590758 | None:intergenic |
| GTACATTCTGGTTTGTCTGT+CGG | 0.500733 | 5.2:-1589222 | None:intergenic |
| CCATGAAGGGACTGCAAGAC+CGG | 0.501023 | 5.2:+1589479 | MS.gene21790:CDS |
| TATGAAGATTTGGATTTGCA+AGG | 0.503391 | 5.2:-1588489 | None:intergenic |
| GAAAATGTAAATTCATATGA+AGG | 0.504472 | 5.2:+1589342 | MS.gene21790:CDS |
| ATCCAAATCTTCATAATGCA+TGG | 0.507310 | 5.2:+1588497 | MS.gene21790:CDS |
| TTACTTCAGGATGTCGGTGC+GGG | 0.508749 | 5.2:-1589781 | None:intergenic |
| GTCAAAACCTTTGTCCATGA+AGG | 0.509754 | 5.2:+1589465 | MS.gene21790:CDS |
| TCTGCCTTGTCAATCTGCAC+CGG | 0.520768 | 5.2:-1589498 | None:intergenic |
| GGATTTCAAGCATGGTGAAA+GGG | 0.521068 | 5.2:+1588422 | MS.gene21790:CDS |
| GTAACTGAATACAAAGGCTC+TGG | 0.523768 | 5.2:+1587977 | MS.gene21790:CDS |
| GGCTTGGGAAGTGGGAAGAA+GGG | 0.526914 | 5.2:+1590006 | MS.gene21790:CDS |
| CTCAACACCTGCTTCTGAGT+TGG | 0.528426 | 5.2:-1590732 | None:intergenic |
| CTGTCGGCATGATATGTTTG+AGG | 0.529117 | 5.2:-1589206 | None:intergenic |
| TGCAAATGTAAGATTATCCA+TGG | 0.529365 | 5.2:+1588222 | MS.gene21790:CDS |
| GACCAAACTAATTCGGAAAG+AGG | 0.530007 | 5.2:-1587593 | None:intergenic |
| TTCTATAGGATTCCTGCTGG+AGG | 0.530141 | 5.2:-1588023 | None:intergenic |
| CTGCAGATCAGGTTGATCAA+AGG | 0.530764 | 5.2:+1587834 | MS.gene21790:intron |
| TGCAGTCCCTTCATGGACAA+AGG | 0.530820 | 5.2:-1589472 | None:intergenic |
| CAGAAACTGGATTTCAAGCA+TGG | 0.531557 | 5.2:+1588414 | MS.gene21790:CDS |
| AGCAGATGGGTAACTGCTCA+TGG | 0.531563 | 5.2:+1589945 | MS.gene21790:intron |
| ATAACGCTGACCAGTGCGAT+TGG | 0.531960 | 5.2:+1587504 | MS.gene21790:CDS |
| ACAAGAATGTTTCATCAAGA+AGG | 0.536595 | 5.2:+1588631 | MS.gene21790:CDS |
| AGATCAATTGCCTTAACAAA+CGG | 0.537737 | 5.2:+1588731 | MS.gene21790:CDS |
| AGGAAAAGTCCTTATCAGAC+GGG | 0.540240 | 5.2:+1588197 | MS.gene21790:CDS |
| TGGATTTCAAGCATGGTGAA+AGG | 0.544832 | 5.2:+1588421 | MS.gene21790:CDS |
| AAGTGGGAAGAAGGGCTTGG+AGG | 0.545767 | 5.2:+1590014 | MS.gene21790:CDS |
| CTAATTTAACATCCTCCAGC+AGG | 0.545874 | 5.2:+1588011 | MS.gene21790:CDS |
| CATTACTTACTTCAGGATGT+CGG | 0.547841 | 5.2:-1589787 | None:intergenic |
| TAGTACCGCCAGATAAAATC+CGG | 0.549876 | 5.2:-1589521 | None:intergenic |
| ATCAGAATATTAATTTAAAG+CGG | 0.551454 | 5.2:+1589571 | MS.gene21790:CDS |
| ACAAAACATGTTTACTTGTG+AGG | 0.552330 | 5.2:-1589244 | None:intergenic |
| TGGAGCAAAATTCTCCATCA+AGG | 0.553513 | 5.2:+1587903 | MS.gene21790:CDS |
| AGTCACCGGAAAGACAATCC+AGG | 0.553846 | 5.2:+1589018 | MS.gene21790:CDS |
| GTGGCTTGTATAACTATAAG+TGG | 0.554774 | 5.2:+1590050 | MS.gene21790:CDS |
| TGCAGATTGACAAGGCAGAC+CGG | 0.555594 | 5.2:+1589502 | MS.gene21790:CDS |
| TAATTTATGCCTTCATTGGG+AGG | 0.557620 | 5.2:-1587929 | None:intergenic |
| CAGCTGAGCAATCACTGAGT+TGG | 0.558671 | 5.2:-1589290 | None:intergenic |
| TGGATCATTCTCGCAACTCG+AGG | 0.560436 | 5.2:+1589965 | MS.gene21790:CDS |
| TGAAGTAATAAATCATCAGT+TGG | 0.560508 | 5.2:-1587857 | None:intergenic |
| TGGTCTGCCAACTCAGAAGC+AGG | 0.561703 | 5.2:+1590725 | MS.gene21790:CDS |
| TCTGGCGGTACTATCCATGA+TGG | 0.562268 | 5.2:+1589531 | MS.gene21790:CDS |
| AAATGGCTTCGACGTTTGCA+AGG | 0.568653 | 5.2:+1589172 | MS.gene21790:CDS |
| CGATTTGCTCCAAAATCCAG+TGG | 0.570951 | 5.2:+1589057 | MS.gene21790:CDS |
| ATATTGTGGTTCTAGTTCAA+AGG | 0.571071 | 5.2:+1589647 | MS.gene21790:CDS |
| AAGCAGAGAATATCAGTCAC+CGG | 0.581238 | 5.2:+1589004 | MS.gene21790:CDS |
| TTACATTGATTATAGCAGCT+AGG | 0.585790 | 5.2:-1587695 | None:intergenic |
| GCATCATGCAAGAAATATTG+TGG | 0.587668 | 5.2:+1589633 | MS.gene21790:CDS |
| AAGGAAAAGTCCTTATCAGA+CGG | 0.587970 | 5.2:+1588196 | MS.gene21790:CDS |
| CTTGTGCCTTAGTAAGGACA+AGG | 0.597028 | 5.2:+1588894 | MS.gene21790:CDS |
| TCAAAACCTTTGTCCATGAA+GGG | 0.597057 | 5.2:+1589466 | MS.gene21790:CDS |
| GGATCATTCTCGCAACTCGA+GGG | 0.597301 | 5.2:+1589966 | MS.gene21790:CDS |
| GGTTCAATATTAGGCTGTGA+CGG | 0.600004 | 5.2:-1588805 | None:intergenic |
| GTTATGCCGCTTCTTACCTG+TGG | 0.607094 | 5.2:-1588296 | None:intergenic |
| TACAGGAAGAAATCATGGAA+TGG | 0.611613 | 5.2:+1590702 | MS.gene21790:intron |
| ATGTTTCATCAAGAAGGAGA+AGG | 0.623506 | 5.2:+1588637 | MS.gene21790:CDS |
| ACAGGAAGAACCTTAACGCA+AGG | 0.624154 | 5.2:-1588124 | None:intergenic |
| GAAGATTTCACATGTGCCAG+AGG | 0.625270 | 5.2:+1589725 | MS.gene21790:CDS |
| AGGAAGAAATCATGGAATGG+TGG | 0.625917 | 5.2:+1590705 | MS.gene21790:intron |
| TAATTCGGAAAGAGGATCAG+TGG | 0.635047 | 5.2:-1587585 | None:intergenic |
| GATGCTGAAAACAAATATGA+GGG | 0.635203 | 5.2:+1588085 | MS.gene21790:CDS |
| GTCACCGGAAAGACAATCCA+GGG | 0.636256 | 5.2:+1589019 | MS.gene21790:CDS |
| ATCTCTCTCAGTGAAAGTAG+GGG | 0.638733 | 5.2:+1590231 | MS.gene21790:CDS |
| ATCCTCGCGAAGATGATGAA+AGG | 0.640734 | 5.2:-1589134 | None:intergenic |
| TTTGTCCTTCTGAAGATGAG+TGG | 0.640790 | 5.2:+1587431 | None:intergenic |
| GACCTTTCATCATCTTCGCG+AGG | 0.641559 | 5.2:+1589132 | MS.gene21790:CDS |
| AAGATTTCACATGTGCCAGA+GGG | 0.642256 | 5.2:+1589726 | MS.gene21790:CDS |
| TTCGCGAGGATTCACAAACT+CGG | 0.642339 | 5.2:+1589146 | MS.gene21790:CDS |
| TCTCTCTCAGTGAAAGTAGG+GGG | 0.646665 | 5.2:+1590232 | MS.gene21790:CDS |
| ATGTAACAGCAAAATCCGCA+TGG | 0.652139 | 5.2:+1588159 | MS.gene21790:CDS |
| TGGAGGAACTGGTTACCATG+TGG | 0.653299 | 5.2:+1590031 | MS.gene21790:CDS |
| CTTACTTCAGGATGTCGGTG+CGG | 0.670580 | 5.2:-1589782 | None:intergenic |
| AAGACCGGTGCAGATTGACA+AGG | 0.674989 | 5.2:+1589494 | MS.gene21790:CDS |
| TCAAGAAGGAGAAGGTGACG+AGG | 0.679529 | 5.2:+1588645 | MS.gene21790:CDS |
| GGAAAAGTCCTTATCAGACG+GGG | 0.700250 | 5.2:+1588198 | MS.gene21790:CDS |
| GAGCCTGTAACTGAATACAA+AGG | 0.702420 | 5.2:+1587971 | MS.gene21790:CDS |
| GCTTCAGAGAGATATGACGC+TGG | 0.707407 | 5.2:+1588781 | MS.gene21790:CDS |
| TTTAGAGCCAAGTAATAACA+CGG | 0.713014 | 5.2:+1588669 | MS.gene21790:CDS |
| AGCAAAATTCTCCATCAAGG+AGG | 0.713594 | 5.2:+1587906 | MS.gene21790:CDS |
| TTATAGTTATACAAGCCACA+TGG | 0.755776 | 5.2:-1590046 | None:intergenic |
| TGGAACATGAAACTGCCCAG+TGG | 0.805275 | 5.2:-1589410 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAAAGGTTCAATATT+AGG | - | chr5.2:1588817-1588836 | None:intergenic | 15.0% |
| !! | AATCATCAATGATTATTTAT+TGG | + | chr5.2:1590316-1590335 | MS.gene21790:intron | 15.0% |
| !! | ATCAGAATATTAATTTAAAG+CGG | + | chr5.2:1589571-1589590 | MS.gene21790:CDS | 15.0% |
| !!! | TTTTAAACTTTTTCTTATTC+TGG | + | chr5.2:1590161-1590180 | MS.gene21790:intron | 15.0% |
| !! | AAACATTTAATGCACATAAA+AGG | - | chr5.2:1589381-1589400 | None:intergenic | 20.0% |
| !! | AACATTTCTTAAATCATTCT+CGG | - | chr5.2:1588065-1588084 | None:intergenic | 20.0% |
| !! | AATCAATGTAAGAAACATAT+AGG | + | chr5.2:1587707-1587726 | MS.gene21790:intron | 20.0% |
| !! | CTTTATAATACAAAATGTCA+CGG | - | chr5.2:1589831-1589850 | None:intergenic | 20.0% |
| !! | GAAAATGTAAATTCATATGA+AGG | + | chr5.2:1589342-1589361 | MS.gene21790:CDS | 20.0% |
| !! | TCTATTGCTTAATTACATTA+AGG | + | chr5.2:1589860-1589879 | MS.gene21790:intron | 20.0% |
| !! | TGGCTGTTATAAAAATTTAA+AGG | - | chr5.2:1588829-1588848 | None:intergenic | 20.0% |
| !!! | TCTAATAAATTTTATGGAGT+GGG | + | chr5.2:1590527-1590546 | MS.gene21790:intron | 20.0% |
| !!! | TTATTACAATCAACATGTTT+TGG | + | chr5.2:1590644-1590663 | MS.gene21790:intron | 20.0% |
| !!! | TTCAGCTCTAATAAATTTTA+TGG | + | chr5.2:1590521-1590540 | MS.gene21790:intron | 20.0% |
| !!! | TTTAAATTTTTATAACAGCC+AGG | + | chr5.2:1588828-1588847 | MS.gene21790:CDS | 20.0% |
| ! | AACTAAATTTCTCTAATCGA+GGG | - | chr5.2:1587771-1587790 | None:intergenic | 25.0% |
| ! | ATCATAATTTATGCCTTCAT+TGG | - | chr5.2:1587936-1587955 | None:intergenic | 25.0% |
| ! | CTAATAGCTTCAATAACAAT+AGG | - | chr5.2:1590461-1590480 | None:intergenic | 25.0% |
| ! | TATCCAAAAAAAAATGAACC+AGG | - | chr5.2:1590118-1590137 | None:intergenic | 25.0% |
| ! | TATCCAAGTTTGAAGAATAT+AGG | + | chr5.2:1588607-1588626 | MS.gene21790:CDS | 25.0% |
| ! | TCATAATTTATGCCTTCATT+GGG | - | chr5.2:1587935-1587954 | None:intergenic | 25.0% |
| ! | TGAAGTAATAAATCATCAGT+TGG | - | chr5.2:1587860-1587879 | None:intergenic | 25.0% |
| ! | TTCAAAAAGAAACAAATGCT+AGG | + | chr5.2:1590785-1590804 | MS.gene21790:CDS | 25.0% |
| !! | ATAATACATGGACTGAAAAA+TGG | - | chr5.2:1588590-1588609 | None:intergenic | 25.0% |
| !! | CACATAAAAGGAAAATTTTC+CGG | - | chr5.2:1589369-1589388 | None:intergenic | 25.0% |
| !! | CTATTAGTTTCAATGTCATT+TGG | + | chr5.2:1590474-1590493 | MS.gene21790:intron | 25.0% |
| !! | CTCTAATAAATTTTATGGAG+TGG | + | chr5.2:1590526-1590545 | MS.gene21790:intron | 25.0% |
| !! | GATTTGAATCCTGTATTTTT+CGG | - | chr5.2:1588568-1588587 | None:intergenic | 25.0% |
| !! | TGAACATATACTTCAACTTT+TGG | - | chr5.2:1589110-1589129 | None:intergenic | 25.0% |
| !! | TTCTTGTTTAATGTAGGATT+TGG | - | chr5.2:1588386-1588405 | None:intergenic | 25.0% |
| !!! | AACAAAAAAGCATTATGAAC+AGG | - | chr5.2:1590142-1590161 | None:intergenic | 25.0% |
| !!! | AACATGTTTTGTTTGTTTTG+TGG | + | chr5.2:1589255-1589274 | MS.gene21790:CDS | 25.0% |
| !!! | ATACCTGGTTCATTTTTTTT+TGG | + | chr5.2:1590112-1590131 | MS.gene21790:intron | 25.0% |
| !!! | TTTTCTTTTTGAGATTGAAC+TGG | - | chr5.2:1589433-1589452 | None:intergenic | 25.0% |
| AACCATGCATTATGAAGATT+TGG | - | chr5.2:1588502-1588521 | None:intergenic | 30.0% | |
| ACAAAACATGTTTACTTGTG+AGG | - | chr5.2:1589247-1589266 | None:intergenic | 30.0% | |
| ACAAGAATGTTTCATCAAGA+AGG | + | chr5.2:1588631-1588650 | MS.gene21790:CDS | 30.0% | |
| AGATCAATTGCCTTAACAAA+CGG | + | chr5.2:1588731-1588750 | MS.gene21790:CDS | 30.0% | |
| AGATGAACCTAAACCTATTA+TGG | + | chr5.2:1587883-1587902 | MS.gene21790:CDS | 30.0% | |
| ATCCAAATCTTCATAATGCA+TGG | + | chr5.2:1588497-1588516 | MS.gene21790:CDS | 30.0% | |
| ATCTGAAGACCAAACTAATT+CGG | - | chr5.2:1587603-1587622 | None:intergenic | 30.0% | |
| ATGATTTCTTCCTGTACAAA+AGG | - | chr5.2:1590698-1590717 | None:intergenic | 30.0% | |
| CTCAAAAAGAAAACCTGAAT+CGG | + | chr5.2:1589440-1589459 | MS.gene21790:CDS | 30.0% | |
| CTGAATTTCACATGAGTTTA+TGG | - | chr5.2:1590506-1590525 | None:intergenic | 30.0% | |
| CTTCAAACTTGGATAATACA+TGG | - | chr5.2:1588602-1588621 | None:intergenic | 30.0% | |
| CTTCTCTAAACTATGTTTCT+CGG | - | chr5.2:1590200-1590219 | None:intergenic | 30.0% | |
| GAACTAAATTTCTCTAATCG+AGG | - | chr5.2:1587772-1587791 | None:intergenic | 30.0% | |
| GATGCTGAAAACAAATATGA+GGG | + | chr5.2:1588085-1588104 | MS.gene21790:CDS | 30.0% | |
| GTTCCTATATTCTTCAAACT+TGG | - | chr5.2:1588613-1588632 | None:intergenic | 30.0% | |
| TACCTCAAGAAAATCTTGAT+TGG | - | chr5.2:1590290-1590309 | None:intergenic | 30.0% | |
| TATGAAGATTTGGATTTGCA+AGG | - | chr5.2:1588492-1588511 | None:intergenic | 30.0% | |
| TGATGCTGAAAACAAATATG+AGG | + | chr5.2:1588084-1588103 | MS.gene21790:CDS | 30.0% | |
| TGATTTCTTCCTGTACAAAA+GGG | - | chr5.2:1590697-1590716 | None:intergenic | 30.0% | |
| TGCAAATGTAAGATTATCCA+TGG | + | chr5.2:1588222-1588241 | MS.gene21790:CDS | 30.0% | |
| TGTAAATTCATATGAAGGTC+CGG | + | chr5.2:1589347-1589366 | MS.gene21790:CDS | 30.0% | |
| TTATAGTTATACAAGCCACA+TGG | - | chr5.2:1590049-1590068 | None:intergenic | 30.0% | |
| TTTATCAGCAAAGCTTGAAT+CGG | - | chr5.2:1587648-1587667 | None:intergenic | 30.0% | |
| ! | AACAATTTTCATTCTCTGCT+GGG | - | chr5.2:1588870-1588889 | None:intergenic | 30.0% |
| ! | ATCCAATCAAGATTTTCTTG+AGG | + | chr5.2:1590285-1590304 | MS.gene21790:CDS | 30.0% |
| ! | ATTGAAAATGCCGTTTGTTA+AGG | - | chr5.2:1588744-1588763 | None:intergenic | 30.0% |
| ! | CTAGATTCCAGTTTTTCTAT+AGG | - | chr5.2:1588040-1588059 | None:intergenic | 30.0% |
| ! | GAAGGCATAAATTATGATAC+TGG | + | chr5.2:1587938-1587957 | MS.gene21790:CDS | 30.0% |
| ! | GGTTAATTTTGCTTATTTCC+TGG | - | chr5.2:1588849-1588868 | None:intergenic | 30.0% |
| ! | TATTCTGATCTGTTTTGTGA+TGG | - | chr5.2:1589560-1589579 | None:intergenic | 30.0% |
| ! | TGAGCTTTCTTGTTTAATGT+AGG | - | chr5.2:1588392-1588411 | None:intergenic | 30.0% |
| ! | TTACATTGATTATAGCAGCT+AGG | - | chr5.2:1587698-1587717 | None:intergenic | 30.0% |
| ! | TTAGTTTGGTCTTCAGATAA+AGG | + | chr5.2:1587605-1587624 | MS.gene21790:CDS | 30.0% |
| ! | TTTAGAGCCAAGTAATAACA+CGG | + | chr5.2:1588669-1588688 | MS.gene21790:CDS | 30.0% |
| ! | TTTTGCTCCATAATAGGTTT+AGG | - | chr5.2:1587893-1587912 | None:intergenic | 30.0% |
| ! | TTTTGTACAGGAAGAAATCA+TGG | + | chr5.2:1590697-1590716 | MS.gene21790:intron | 30.0% |
| !! | ATATTGTGGTTCTAGTTCAA+AGG | + | chr5.2:1589647-1589666 | MS.gene21790:CDS | 30.0% |
| !!! | TGTTTGTTTTGTGGAAAAAG+AGG | + | chr5.2:1589264-1589283 | MS.gene21790:CDS | 30.0% |
| AAATCTCTCTCAGTGAAAGT+AGG | + | chr5.2:1590229-1590248 | MS.gene21790:CDS | 35.0% | |
| AAGAAAGCTCATTCAGAAAC+TGG | + | chr5.2:1588401-1588420 | MS.gene21790:CDS | 35.0% | |
| AAGAGTTCACTATCAGTCTT+TGG | - | chr5.2:1587479-1587498 | None:intergenic | 35.0% | |
| AAGGAAAAGTCCTTATCAGA+CGG | + | chr5.2:1588196-1588215 | MS.gene21790:CDS | 35.0% | |
| AATCTCTCTCAGTGAAAGTA+GGG | + | chr5.2:1590230-1590249 | MS.gene21790:CDS | 35.0% | |
| AGGTATGATTCTACATTCCA+AGG | - | chr5.2:1590098-1590117 | None:intergenic | 35.0% | |
| ATCCTCTTTCCGAATTAGTT+TGG | + | chr5.2:1587591-1587610 | MS.gene21790:CDS | 35.0% | |
| ATCGACAATGAAGAAACTTC+TGG | + | chr5.2:1588358-1588377 | MS.gene21790:CDS | 35.0% | |
| ATGTCACGGTATAAGTTAGT+AGG | - | chr5.2:1589817-1589836 | None:intergenic | 35.0% | |
| ATGTTTCATCAAGAAGGAGA+AGG | + | chr5.2:1588637-1588656 | MS.gene21790:CDS | 35.0% | |
| ATTCTCTGCTTTCTTTCTCT+CGG | - | chr5.2:1588995-1589014 | None:intergenic | 35.0% | |
| CAGAACGAGGAATACTATTA+AGG | - | chr5.2:1587808-1587827 | None:intergenic | 35.0% | |
| CAGGAATCCTATAGAAAAAC+TGG | + | chr5.2:1588030-1588049 | MS.gene21790:CDS | 35.0% | |
| CATTACTTACTTCAGGATGT+CGG | - | chr5.2:1589790-1589809 | None:intergenic | 35.0% | |
| GATATCAGATCTTCTTCAGA+TGG | - | chr5.2:1590761-1590780 | None:intergenic | 35.0% | |
| GATTTCTTCCTGTACAAAAG+GGG | - | chr5.2:1590696-1590715 | None:intergenic | 35.0% | |
| GCATCATGCAAGAAATATTG+TGG | + | chr5.2:1589633-1589652 | MS.gene21790:CDS | 35.0% | |
| GGTATGATTCTACATTCCAA+GGG | - | chr5.2:1590097-1590116 | None:intergenic | 35.0% | |
| TAATTTATGCCTTCATTGGG+AGG | - | chr5.2:1587932-1587951 | None:intergenic | 35.0% | |
| TACAGGAAGAAATCATGGAA+TGG | + | chr5.2:1590702-1590721 | MS.gene21790:intron | 35.0% | |
| TAGTAAGGACAAGGAAGAAA+TGG | + | chr5.2:1588903-1588922 | MS.gene21790:CDS | 35.0% | |
| TCAAAACCTTTGTCCATGAA+GGG | + | chr5.2:1589466-1589485 | MS.gene21790:CDS | 35.0% | |
| TGAATTGCTGTCATTATCCA+TGG | - | chr5.2:1588242-1588261 | None:intergenic | 35.0% | |
| TGATGCATTGCATTCTATCT+TGG | - | chr5.2:1589619-1589638 | None:intergenic | 35.0% | |
| TTAAAATCACACTTTGCCCT+TGG | + | chr5.2:1590078-1590097 | MS.gene21790:intron | 35.0% | |
| TTACATGGAGAATGCAAAAC+AGG | - | chr5.2:1588145-1588164 | None:intergenic | 35.0% | |
| TTCAAACTTGTGCCTTAGTA+AGG | + | chr5.2:1588888-1588907 | MS.gene21790:CDS | 35.0% | |
| TTGGAATGTAGAATCATACC+TGG | + | chr5.2:1590097-1590116 | MS.gene21790:intron | 35.0% | |
| TTGTTAAGGCAATTGATCTC+TGG | - | chr5.2:1588730-1588749 | None:intergenic | 35.0% | |
| TTTACTTGTGAGGTACATTC+TGG | - | chr5.2:1589237-1589256 | None:intergenic | 35.0% | |
| TTTCTTCCTTGTCCTTACTA+AGG | - | chr5.2:1588903-1588922 | None:intergenic | 35.0% | |
| ! | ATCTCTGGAAAACAGGTTAT+TGG | - | chr5.2:1588715-1588734 | None:intergenic | 35.0% |
| ! | CGAGGGTATATTTCAAATGT+TGG | - | chr5.2:1587754-1587773 | None:intergenic | 35.0% |
| ! | GAACAATTTTCATTCTCTGC+TGG | - | chr5.2:1588871-1588890 | None:intergenic | 35.0% |
| ! | GGAGAATTTTGCTCCATAAT+AGG | - | chr5.2:1587899-1587918 | None:intergenic | 35.0% |
| ! | GTGGCTTGTATAACTATAAG+TGG | + | chr5.2:1590050-1590069 | MS.gene21790:CDS | 35.0% |
| ! | TTCTGAATTTTCTGCAGATC+AGG | + | chr5.2:1587823-1587842 | MS.gene21790:intron | 35.0% |
| ! | TTTCACTGAGAGAGATTTTC+TGG | - | chr5.2:1590227-1590246 | None:intergenic | 35.0% |
| ! | TTTTTCTATAGGATTCCTGC+TGG | - | chr5.2:1588029-1588048 | None:intergenic | 35.0% |
| !!! | TTTTGTGATGGATTCCATCA+TGG | - | chr5.2:1589548-1589567 | None:intergenic | 35.0% |
| !!! | TTTTTTCCACAGGTAAGAAG+CGG | + | chr5.2:1588290-1588309 | MS.gene21790:CDS | 35.0% |
| AAGATTTCACATGTGCCAGA+GGG | + | chr5.2:1589726-1589745 | MS.gene21790:CDS | 40.0% | |
| AAGCAGAGAATATCAGTCAC+CGG | + | chr5.2:1589004-1589023 | MS.gene21790:CDS | 40.0% | |
| AAGTGAGCTAGAAGATCTTC+AGG | + | chr5.2:1589320-1589339 | MS.gene21790:CDS | 40.0% | |
| AATCCTGAGCCGAAAAATAC+AGG | + | chr5.2:1588556-1588575 | MS.gene21790:CDS | 40.0% | |
| ACAGTTAGTGTGTAGCAGAT+GGG | + | chr5.2:1589932-1589951 | MS.gene21790:intron | 40.0% | |
| ACGTTTGCAAGGAGAATTGT+TGG | + | chr5.2:1589183-1589202 | MS.gene21790:CDS | 40.0% | |
| ACTGCATCAAAAATTCCCTC+TGG | - | chr5.2:1589744-1589763 | None:intergenic | 40.0% | |
| AGCAAAATTCTCCATCAAGG+AGG | + | chr5.2:1587906-1587925 | MS.gene21790:CDS | 40.0% | |
| AGGAAAAGTCCTTATCAGAC+GGG | + | chr5.2:1588197-1588216 | MS.gene21790:CDS | 40.0% | |
| AGGAAGAAATCATGGAATGG+TGG | + | chr5.2:1590705-1590724 | MS.gene21790:intron | 40.0% | |
| AGGCTTGCATTACTTACTTC+AGG | - | chr5.2:1589797-1589816 | None:intergenic | 40.0% | |
| ATCCGCATGGCAAAAAACAA+AGG | + | chr5.2:1588172-1588191 | MS.gene21790:CDS | 40.0% | |
| ATCTCTCTCAGTGAAAGTAG+GGG | + | chr5.2:1590231-1590250 | MS.gene21790:CDS | 40.0% | |
| ATGTAACAGCAAAATCCGCA+TGG | + | chr5.2:1588159-1588178 | MS.gene21790:CDS | 40.0% | |
| ATTCACAAACTCGGAGCAAA+TGG | + | chr5.2:1589155-1589174 | MS.gene21790:CDS | 40.0% | |
| CAGAAACTGGATTTCAAGCA+TGG | + | chr5.2:1588414-1588433 | MS.gene21790:CDS | 40.0% | |
| CATGGCAAAAAACAAAGGCA+AGG | + | chr5.2:1588177-1588196 | MS.gene21790:CDS | 40.0% | |
| CCAAGTAATAACACGGTACA+TGG | + | chr5.2:1588676-1588695 | MS.gene21790:CDS | 40.0% | |
| CTAATTTAACATCCTCCAGC+AGG | + | chr5.2:1588011-1588030 | MS.gene21790:CDS | 40.0% | |
| CTTGGCGTTTATAACGTCAT+TGG | - | chr5.2:1589601-1589620 | None:intergenic | 40.0% | |
| GACCAAACTAATTCGGAAAG+AGG | - | chr5.2:1587596-1587615 | None:intergenic | 40.0% | |
| GAGCCTGTAACTGAATACAA+AGG | + | chr5.2:1587971-1587990 | MS.gene21790:CDS | 40.0% | |
| GAGCCTTTGTATTCAGTTAC+AGG | - | chr5.2:1587977-1587996 | None:intergenic | 40.0% | |
| GGATTTCAAGCATGGTGAAA+GGG | + | chr5.2:1588422-1588441 | MS.gene21790:CDS | 40.0% | |
| GGTTCAATATTAGGCTGTGA+CGG | - | chr5.2:1588808-1588827 | None:intergenic | 40.0% | |
| GTAACTGAATACAAAGGCTC+TGG | + | chr5.2:1587977-1587996 | MS.gene21790:CDS | 40.0% | |
| GTCAAAACCTTTGTCCATGA+AGG | + | chr5.2:1589465-1589484 | MS.gene21790:CDS | 40.0% | |
| TAATTCGGAAAGAGGATCAG+TGG | - | chr5.2:1587588-1587607 | None:intergenic | 40.0% | |
| TACAGTTAGTGTGTAGCAGA+TGG | + | chr5.2:1589931-1589950 | MS.gene21790:intron | 40.0% | |
| TAGTACCGCCAGATAAAATC+CGG | - | chr5.2:1589524-1589543 | None:intergenic | 40.0% | |
| TATAACATCTCCGTCGAGAT+TGG | + | chr5.2:1589695-1589714 | MS.gene21790:CDS | 40.0% | |
| TCTGCAGAAAATTCAGAACG+AGG | - | chr5.2:1587821-1587840 | None:intergenic | 40.0% | |
| TGGAAAAATGACTCATGTGC+AGG | + | chr5.2:1587524-1587543 | MS.gene21790:CDS | 40.0% | |
| TGGAGCAAAATTCTCCATCA+AGG | + | chr5.2:1587903-1587922 | MS.gene21790:CDS | 40.0% | |
| TGGATTTCAAGCATGGTGAA+AGG | + | chr5.2:1588421-1588440 | MS.gene21790:CDS | 40.0% | |
| TTGAAAGCTGTAACAGTGCT+AGG | + | chr5.2:1588266-1588285 | MS.gene21790:CDS | 40.0% | |
| ! | AATGTTTTCAGCTCAACCAC+TGG | + | chr5.2:1589394-1589413 | MS.gene21790:CDS | 40.0% |
| ! | ATGTTTTCAGCTCAACCACT+GGG | + | chr5.2:1589395-1589414 | MS.gene21790:CDS | 40.0% |
| ! | CCATGTACCGTGTTATTACT+TGG | - | chr5.2:1588679-1588698 | None:intergenic | 40.0% |
| ! | GCAATTGATCTCTGGAAAAC+AGG | - | chr5.2:1588722-1588741 | None:intergenic | 40.0% |
| ! | TCCTCAAAACCACTGGATTT+TGG | - | chr5.2:1589069-1589088 | None:intergenic | 40.0% |
| ! | TTCTTTTCAGCCAATCTCGA+CGG | - | chr5.2:1589708-1589727 | None:intergenic | 40.0% |
| !! | AATCCTGTATTTTTCGGCTC+AGG | - | chr5.2:1588562-1588581 | None:intergenic | 40.0% |
| !! | AGTTCTCTTTTTCGCGATGT+TGG | + | chr5.2:1587671-1587690 | MS.gene21790:CDS | 40.0% |
| !! | CTCAACAGCAGTTGATGATT+GGG | + | chr5.2:1588320-1588339 | MS.gene21790:CDS | 40.0% |
| !! | GCTATTTTCCCCTTTTGTAC+AGG | + | chr5.2:1590685-1590704 | MS.gene21790:intron | 40.0% |
| !! | GTACATTCTGGTTTGTCTGT+CGG | - | chr5.2:1589225-1589244 | None:intergenic | 40.0% |
| !! | TCCAAAATCCAGTGGTTTTG+AGG | + | chr5.2:1589065-1589084 | MS.gene21790:CDS | 40.0% |
| !! | TCTCAACAGCAGTTGATGAT+TGG | + | chr5.2:1588319-1588338 | MS.gene21790:CDS | 40.0% |
| !!! | AAGGTTTTGACTTCCGATTC+AGG | - | chr5.2:1589456-1589475 | None:intergenic | 40.0% |
| !!! | AGTCATTTTTCCAATCGCAC+TGG | - | chr5.2:1587517-1587536 | None:intergenic | 40.0% |
| !!! | AGTGCTAGGTTTTTTTCCAC+AGG | + | chr5.2:1588280-1588299 | MS.gene21790:CDS | 40.0% |
| !!! | ATGCGGATTTTGCTGTTACA+TGG | - | chr5.2:1588160-1588179 | None:intergenic | 40.0% |
| !!! | TGCCTTTGTTTTTTGCCATG+CGG | - | chr5.2:1588177-1588196 | None:intergenic | 40.0% |
| AAATGGCTTCGACGTTTGCA+AGG | + | chr5.2:1589172-1589191 | MS.gene21790:CDS | 45.0% | |
| AACGACACTACCTTGCGTTA+AGG | + | chr5.2:1588114-1588133 | MS.gene21790:CDS | 45.0% | |
| AAGACAATCCAGGGAGTCTA+TGG | + | chr5.2:1589028-1589047 | MS.gene21790:CDS | 45.0% | |
| ACAGGAAGAACCTTAACGCA+AGG | - | chr5.2:1588127-1588146 | None:intergenic | 45.0% | |
| AGTAGGGGGAATCAAGTGTA+TGG | + | chr5.2:1590246-1590265 | MS.gene21790:CDS | 45.0% | |
| ATCCTCGCGAAGATGATGAA+AGG | - | chr5.2:1589137-1589156 | None:intergenic | 45.0% | |
| ATTTGCATCCCCGTCTGATA+AGG | - | chr5.2:1588209-1588228 | None:intergenic | 45.0% | |
| CTCATCTTCCTCAAAACCAC+TGG | - | chr5.2:1589076-1589095 | None:intergenic | 45.0% | |
| CTCGACGGAGATGTTATACT+AGG | - | chr5.2:1589693-1589712 | None:intergenic | 45.0% | |
| CTGTCGGCATGATATGTTTG+AGG | - | chr5.2:1589209-1589228 | None:intergenic | 45.0% | |
| CTTGTGCCTTAGTAAGGACA+AGG | + | chr5.2:1588894-1588913 | MS.gene21790:CDS | 45.0% | |
| GAAGATTTCACATGTGCCAG+AGG | + | chr5.2:1589725-1589744 | MS.gene21790:CDS | 45.0% | |
| GGAAAAGTCCTTATCAGACG+GGG | + | chr5.2:1588198-1588217 | MS.gene21790:CDS | 45.0% | |
| TCTCTCTCAGTGAAAGTAGG+GGG | + | chr5.2:1590232-1590251 | MS.gene21790:CDS | 45.0% | |
| TCTGCTTTCTTTCTCTCGGA+TGG | - | chr5.2:1588991-1589010 | None:intergenic | 45.0% | |
| TTCGCGAGGATTCACAAACT+CGG | + | chr5.2:1589146-1589165 | MS.gene21790:CDS | 45.0% | |
| TTCTATAGGATTCCTGCTGG+AGG | - | chr5.2:1588026-1588045 | None:intergenic | 45.0% | |
| ! | AAGGCAGACCGGATTTTATC+TGG | + | chr5.2:1589513-1589532 | MS.gene21790:CDS | 45.0% |
| ! | CGATTTGCTCCAAAATCCAG+TGG | + | chr5.2:1589057-1589076 | MS.gene21790:CDS | 45.0% |
| !! | CTGCAGATCAGGTTGATCAA+AGG | + | chr5.2:1587834-1587853 | MS.gene21790:intron | 45.0% |
| AAGACCGGTGCAGATTGACA+AGG | + | chr5.2:1589494-1589513 | MS.gene21790:CDS | 50.0% | |
| AGCAGATGGGTAACTGCTCA+TGG | + | chr5.2:1589945-1589964 | MS.gene21790:intron | 50.0% | |
| AGTCACCGGAAAGACAATCC+AGG | + | chr5.2:1589018-1589037 | MS.gene21790:CDS | 50.0% | |
| ATAACGCTGACCAGTGCGAT+TGG | + | chr5.2:1587504-1587523 | MS.gene21790:CDS | 50.0% | |
| CAGCTGAGCAATCACTGAGT+TGG | - | chr5.2:1589293-1589312 | None:intergenic | 50.0% | |
| CGAGTTATCCATAGACTCCC+TGG | - | chr5.2:1589039-1589058 | None:intergenic | 50.0% | |
| CTCAACACCTGCTTCTGAGT+TGG | - | chr5.2:1590735-1590754 | None:intergenic | 50.0% | |
| CTTACTTCAGGATGTCGGTG+CGG | - | chr5.2:1589785-1589804 | None:intergenic | 50.0% | |
| GACCTTTCATCATCTTCGCG+AGG | + | chr5.2:1589132-1589151 | MS.gene21790:CDS | 50.0% | |
| GACTCCCTGGATTGTCTTTC+CGG | - | chr5.2:1589026-1589045 | None:intergenic | 50.0% | |
| GCTTCAGAGAGATATGACGC+TGG | + | chr5.2:1588781-1588800 | MS.gene21790:CDS | 50.0% | |
| GGATCATTCTCGCAACTCGA+GGG | + | chr5.2:1589966-1589985 | MS.gene21790:CDS | 50.0% | |
| GTCACCGGAAAGACAATCCA+GGG | + | chr5.2:1589019-1589038 | MS.gene21790:CDS | 50.0% | |
| TCAAGAAGGAGAAGGTGACG+AGG | + | chr5.2:1588645-1588664 | MS.gene21790:CDS | 50.0% | |
| TCTGCCTTGTCAATCTGCAC+CGG | - | chr5.2:1589501-1589520 | None:intergenic | 50.0% | |
| TCTGGCGGTACTATCCATGA+TGG | + | chr5.2:1589531-1589550 | MS.gene21790:CDS | 50.0% | |
| TGCAGATTGACAAGGCAGAC+CGG | + | chr5.2:1589502-1589521 | MS.gene21790:CDS | 50.0% | |
| TGCAGTCCCTTCATGGACAA+AGG | - | chr5.2:1589475-1589494 | None:intergenic | 50.0% | |
| TGGAACATGAAACTGCCCAG+TGG | - | chr5.2:1589413-1589432 | None:intergenic | 50.0% | |
| TGGAGGAACTGGTTACCATG+TGG | + | chr5.2:1590031-1590050 | MS.gene21790:CDS | 50.0% | |
| TGGATCATTCTCGCAACTCG+AGG | + | chr5.2:1589965-1589984 | MS.gene21790:CDS | 50.0% | |
| TTACTTCAGGATGTCGGTGC+GGG | - | chr5.2:1589784-1589803 | None:intergenic | 50.0% | |
| ! | GCAGACCGGATTTTATCTGG+CGG | + | chr5.2:1589516-1589535 | MS.gene21790:CDS | 50.0% |
| ! | GTTATGCCGCTTCTTACCTG+TGG | - | chr5.2:1588299-1588318 | None:intergenic | 50.0% |
| !!! | AGGGTTTTTTCTTGCGCCTG+CGG | + | chr5.2:1589985-1590004 | MS.gene21790:CDS | 50.0% |
| AAGTGGGAAGAAGGGCTTGG+AGG | + | chr5.2:1590014-1590033 | MS.gene21790:CDS | 55.0% | |
| CCATGAAGGGACTGCAAGAC+CGG | + | chr5.2:1589479-1589498 | MS.gene21790:CDS | 55.0% | |
| CTTTCTCTCGGATGGTGCGT+TGG | - | chr5.2:1588983-1589002 | None:intergenic | 55.0% | |
| GAAGAAGGGCTTGGAGGAAC+TGG | + | chr5.2:1590020-1590039 | MS.gene21790:CDS | 55.0% | |
| GGCTTGGGAAGTGGGAAGAA+GGG | + | chr5.2:1590006-1590025 | MS.gene21790:CDS | 55.0% | |
| TCAAGGAGGCCTCCCAATGA+AGG | + | chr5.2:1587920-1587939 | MS.gene21790:CDS | 55.0% | |
| TCATTGGGAGGCCTCCTTGA+TGG | - | chr5.2:1587920-1587939 | None:intergenic | 55.0% | |
| TGGTCTGCCAACTCAGAAGC+AGG | + | chr5.2:1590725-1590744 | MS.gene21790:CDS | 55.0% | |
| ! | TTTTCTTGCGCCTGCGGCTT+GGG | + | chr5.2:1589991-1590010 | MS.gene21790:CDS | 55.0% |
| ! | TTTTTCTTGCGCCTGCGGCT+TGG | + | chr5.2:1589990-1590009 | MS.gene21790:CDS | 55.0% |
| !! | TACAAAGGCTCTGGTGCTGC+AGG | + | chr5.2:1587986-1588005 | MS.gene21790:CDS | 55.0% |
| CCGGTCTTGCAGTCCCTTCA+TGG | - | chr5.2:1589482-1589501 | None:intergenic | 60.0% | |
| GGGAAGTGGGAAGAAGGGCT+TGG | + | chr5.2:1590011-1590030 | MS.gene21790:CDS | 60.0% | |
| ! | CGGCTTGGGAAGTGGGAAGA+AGG | + | chr5.2:1590005-1590024 | MS.gene21790:CDS | 60.0% |
| CTTCCCACTTCCCAAGCCGC+AGG | - | chr5.2:1590004-1590023 | None:intergenic | 65.0% | |
| ! | GCGCCTGCGGCTTGGGAAGT+GGG | + | chr5.2:1589998-1590017 | MS.gene21790:CDS | 70.0% |
| ! | TGCGCCTGCGGCTTGGGAAG+TGG | + | chr5.2:1589997-1590016 | MS.gene21790:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 1587446 | 1590814 | 1587446 | ID=MS.gene21790 |
| chr5.2 | mRNA | 1587446 | 1590814 | 1587446 | ID=MS.gene21790.t1;Parent=MS.gene21790 |
| chr5.2 | exon | 1587446 | 1587713 | 1587446 | ID=MS.gene21790.t1.exon1;Parent=MS.gene21790.t1 |
| chr5.2 | CDS | 1587446 | 1587713 | 1587446 | ID=cds.MS.gene21790.t1;Parent=MS.gene21790.t1 |
| chr5.2 | exon | 1587840 | 1589799 | 1587840 | ID=MS.gene21790.t1.exon2;Parent=MS.gene21790.t1 |
| chr5.2 | CDS | 1587840 | 1589799 | 1587840 | ID=cds.MS.gene21790.t1;Parent=MS.gene21790.t1 |
| chr5.2 | exon | 1589950 | 1590071 | 1589950 | ID=MS.gene21790.t1.exon3;Parent=MS.gene21790.t1 |
| chr5.2 | CDS | 1589950 | 1590071 | 1589950 | ID=cds.MS.gene21790.t1;Parent=MS.gene21790.t1 |
| chr5.2 | exon | 1590194 | 1590306 | 1590194 | ID=MS.gene21790.t1.exon4;Parent=MS.gene21790.t1 |
| chr5.2 | CDS | 1590194 | 1590306 | 1590194 | ID=cds.MS.gene21790.t1;Parent=MS.gene21790.t1 |
| chr5.2 | exon | 1590707 | 1590814 | 1590707 | ID=MS.gene21790.t1.exon5;Parent=MS.gene21790.t1 |
| chr5.2 | CDS | 1590707 | 1590814 | 1590707 | ID=cds.MS.gene21790.t1;Parent=MS.gene21790.t1 |
| Gene Sequence |
| Protein sequence |
