Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22977.t1 | EFH50611.1 | 100 | 79 | 0 | 0 | 1 | 79 | 15 | 93 | 1.10E-40 | 176 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22977.t1 | F4K4E3 | 98.7 | 79 | 1 | 0 | 1 | 79 | 15 | 93 | 6.1e-43 | 174.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22977.t1 | G7KRW1 | 100.0 | 79 | 0 | 0 | 1 | 79 | 15 | 93 | 8.2e-41 | 176.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44813 | MS.gene22977 | PPI |
| MS.gene23567 | MS.gene22977 | PPI |
| MS.gene22977 | MS.gene023131 | PPI |
| MS.gene43700 | MS.gene22977 | PPI |
| MS.gene22977 | MS.gene006962 | PPI |
| MS.gene35136 | MS.gene22977 | PPI |
| MS.gene051241 | MS.gene22977 | PPI |
| MS.gene36469 | MS.gene22977 | PPI |
| MS.gene051245 | MS.gene22977 | PPI |
| MS.gene051172 | MS.gene22977 | PPI |
| MS.gene055162 | MS.gene22977 | PPI |
| MS.gene028322 | MS.gene22977 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22977.t1 | MTR_8g058537 | 100.000 | 132 | 0 | 0 | 1 | 132 | 15 | 146 | 1.36e-93 | 266 |
| MS.gene22977.t1 | MTR_8g058420 | 100.000 | 132 | 0 | 0 | 1 | 132 | 15 | 146 | 1.36e-93 | 266 |
| MS.gene22977.t1 | MTR_7g108700 | 100.000 | 130 | 0 | 0 | 1 | 130 | 15 | 144 | 4.43e-92 | 263 |
| MS.gene22977.t1 | MTR_8g091620 | 98.462 | 130 | 2 | 0 | 1 | 130 | 15 | 144 | 2.57e-90 | 258 |
| MS.gene22977.t1 | MTR_1g088710 | 70.115 | 87 | 8 | 1 | 1 | 87 | 15 | 83 | 2.48e-39 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22977.t1 | AT5G27720 | 74.400 | 125 | 11 | 1 | 1 | 125 | 15 | 118 | 2.14e-49 | 154 |
Find 49 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAGGATGGAGATAGATTT+TGG | 0.216805 | 7.2:-6402126 | MS.gene22977:intron |
| TTTCCCCGTATGTAGCATTC+AGG | 0.377935 | 7.2:+6402097 | None:intergenic |
| ACCTGGTGTGGGACGTGGTA+GGG | 0.379220 | 7.2:-6401012 | MS.gene22977:CDS |
| TTAGGTTATTGACAAAGTTC+AGG | 0.395045 | 7.2:-6401589 | MS.gene22977:intron |
| TTCCTCCAGGCTTTCCACCT+TGG | 0.401016 | 7.2:+6400880 | None:intergenic |
| GCTAGAGGAGCCGGAGGCCG+AGG | 0.407132 | 7.2:-6400912 | MS.gene22977:CDS |
| CCTGGTGTGGGACGTGGTAG+GGG | 0.408573 | 7.2:-6401011 | MS.gene22977:CDS |
| GAGGAGCCGGAGGCCGAGGC+AGG | 0.410182 | 7.2:-6400908 | MS.gene22977:CDS |
| AGGGAGGATGCTGCTGGTGC+CGG | 0.411969 | 7.2:-6400981 | MS.gene22977:CDS |
| AGAGACATACAATGGGCATT+TGG | 0.420274 | 7.2:-6402295 | MS.gene22977:CDS |
| GCTAGCCCTGCCTCGGCCTC+CGG | 0.431923 | 7.2:+6400902 | None:intergenic |
| GATTTACCTCTGCTTCCTCC+AGG | 0.434977 | 7.2:+6400867 | None:intergenic |
| CACCTTGGCTAGCCCTGCCT+CGG | 0.439949 | 7.2:+6400895 | None:intergenic |
| CAGGAAGAAAAGAGCCGTAC+AGG | 0.449085 | 7.2:-6401570 | MS.gene22977:intron |
| GCTAGCCAAGGTGGAAAGCC+TGG | 0.450993 | 7.2:-6400885 | MS.gene22977:CDS |
| GACGTGGTAGGGGTAGAGGT+AGG | 0.454494 | 7.2:-6401001 | MS.gene22977:CDS |
| CACCTGGTGTGGGACGTGGT+AGG | 0.455282 | 7.2:-6401013 | MS.gene22977:CDS |
| AGAGGTAGGGAGGATGCTGC+TGG | 0.457443 | 7.2:-6400987 | MS.gene22977:CDS |
| GTGGGACGTGGTAGGGGTAG+AGG | 0.457910 | 7.2:-6401005 | MS.gene22977:CDS |
| TAGAGGTACAAATAACTTCT+CGG | 0.459260 | 7.2:+6402241 | None:intergenic |
| GCCGGTGGACGCCAAACAAA+AGG | 0.460235 | 7.2:-6400963 | MS.gene22977:CDS |
| AAGCCACCTGGTGTGGGACG+TGG | 0.485336 | 7.2:-6401017 | MS.gene22977:CDS |
| CCACCATTACATACCTCATC+AGG | 0.487502 | 7.2:+6402052 | None:intergenic |
| ACGTGGTAGGGGTAGAGGTA+GGG | 0.508609 | 7.2:-6401000 | MS.gene22977:CDS |
| CCCCTACCACGTCCCACACC+AGG | 0.510334 | 7.2:+6401011 | None:intergenic |
| GGACGCCAAACAAAAGGCAC+TGG | 0.522545 | 7.2:-6400957 | MS.gene22977:CDS |
| GAGGATGCTGCTGGTGCCGG+TGG | 0.525391 | 7.2:-6400978 | MS.gene22977:CDS |
| GGATGCCTGAATGCTACATA+CGG | 0.526971 | 7.2:-6402102 | MS.gene22977:CDS |
| CAAACAAAAGGCACTGGGCG+TGG | 0.536007 | 7.2:-6400951 | MS.gene22977:CDS |
| ATTTGGTTAATTGTGATACA+TGG | 0.537665 | 7.2:-6402278 | MS.gene22977:CDS |
| AGATCGCAAGCCACCTGGTG+TGG | 0.544354 | 7.2:-6401024 | MS.gene22977:CDS |
| GATGGTGGTGCTAGAGGAGC+CGG | 0.551923 | 7.2:-6400921 | MS.gene22977:CDS |
| TGGTAGGGGTAGAGGTAGGG+AGG | 0.553128 | 7.2:-6400997 | MS.gene22977:CDS |
| AGGAGCCGGAGGCCGAGGCA+GGG | 0.555849 | 7.2:-6400907 | MS.gene22977:CDS |
| GATCGCAAGCCACCTGGTGT+GGG | 0.560007 | 7.2:-6401023 | MS.gene22977:CDS |
| AATAATACTTCATACCTGTA+CGG | 0.560629 | 7.2:+6401556 | None:intergenic |
| GATGCCTGAATGCTACATAC+GGG | 0.568362 | 7.2:-6402101 | MS.gene22977:CDS |
| TTTGATGATGGTGGTGCTAG+AGG | 0.572144 | 7.2:-6400927 | MS.gene22977:CDS |
| GGCCGAGGCAGGGCTAGCCA+AGG | 0.579681 | 7.2:-6400897 | MS.gene22977:CDS |
| GGAAAGCCTGGAGGAAGCAG+AGG | 0.582079 | 7.2:-6400873 | MS.gene22977:CDS |
| AAAATGGAGAGACATACAAT+GGG | 0.598757 | 7.2:-6402302 | MS.gene22977:CDS |
| CGAGGCAGGGCTAGCCAAGG+TGG | 0.621999 | 7.2:-6400894 | MS.gene22977:CDS |
| GACGCCAAACAAAAGGCACT+GGG | 0.628038 | 7.2:-6400956 | MS.gene22977:CDS |
| GGTGGTGCTAGAGGAGCCGG+AGG | 0.630108 | 7.2:-6400918 | MS.gene22977:CDS |
| GTACCTTCGAGTTCCTGATG+AGG | 0.661844 | 7.2:-6402065 | MS.gene22977:intron |
| CTACCACGTCCCACACCAGG+TGG | 0.667375 | 7.2:+6401014 | None:intergenic |
| ATACCTCATCAGGAACTCGA+AGG | 0.675708 | 7.2:+6402062 | None:intergenic |
| AGCCAAGGTGGAAAGCCTGG+AGG | 0.717081 | 7.2:-6400882 | MS.gene22977:CDS |
| ATGCCTGAATGCTACATACG+GGG | 0.720606 | 7.2:-6402100 | MS.gene22977:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTATTTATAAAGATATTA+AGG | - | chr7.2:6401277-6401296 | MS.gene22977:intron | 10.0% |
| !! | GTTATTTATAAAGATATTAA+GGG | - | chr7.2:6401278-6401297 | MS.gene22977:intron | 10.0% |
| !!! | AACTTTATTTTTTATATAAC+TGG | + | chr7.2:6402202-6402221 | None:intergenic | 10.0% |
| !!! | TTTTCTTAAATAACATTAAA+GGG | + | chr7.2:6401481-6401500 | None:intergenic | 10.0% |
| !! | TTAAAACTAATGGTATAAAA+TGG | + | chr7.2:6401364-6401383 | None:intergenic | 15.0% |
| !!! | GTTTTCTTAAATAACATTAA+AGG | + | chr7.2:6401482-6401501 | None:intergenic | 15.0% |
| !!! | TTATTTTTTATATAACTGGA+AGG | + | chr7.2:6402198-6402217 | None:intergenic | 15.0% |
| !!! | TTTAATTTGTTATTGTTGAA+AGG | - | chr7.2:6401121-6401140 | MS.gene22977:intron | 15.0% |
| !! | AAATTATCTGATTCACTAAA+AGG | + | chr7.2:6401631-6401650 | None:intergenic | 20.0% |
| !! | AATTATCTGATTCACTAAAA+GGG | + | chr7.2:6401630-6401649 | None:intergenic | 20.0% |
| !! | GTAAGAGTAGATTAATATAT+TGG | - | chr7.2:6401400-6401419 | MS.gene22977:intron | 20.0% |
| !! | TAAAAAGAACATTACTTTAG+AGG | + | chr7.2:6401080-6401099 | None:intergenic | 20.0% |
| !!! | ATACCATTAGTTTTAAGATT+CGG | - | chr7.2:6401368-6401387 | MS.gene22977:intron | 20.0% |
| !!! | TTATGGATTTTGATTGAAAT+TGG | - | chr7.2:6401149-6401168 | MS.gene22977:intron | 20.0% |
| ! | AATAATACTTCATACCTGTA+CGG | + | chr7.2:6401748-6401767 | None:intergenic | 25.0% |
| ! | ATCTTGATGCATATGTAAAT+TGG | - | chr7.2:6402005-6402024 | MS.gene22977:intron | 25.0% |
| ! | ATTGGAATAGATGTTCTTAT+TGG | - | chr7.2:6401418-6401437 | MS.gene22977:intron | 25.0% |
| ! | ATTTGGTTAATTGTGATACA+TGG | - | chr7.2:6401023-6401042 | MS.gene22977:CDS | 25.0% |
| ! | TATTGAACATGGGTTTAATT+GGG | - | chr7.2:6401530-6401549 | MS.gene22977:intron | 25.0% |
| ! | TATTTCAATCCAAAATCTCA+AGG | + | chr7.2:6401887-6401906 | None:intergenic | 25.0% |
| ! | TGATAAATCCTAAATTGACT+AGG | - | chr7.2:6401817-6401836 | MS.gene22977:intron | 25.0% |
| ! | TGGTGGTTTATAACTTATAA+GGG | - | chr7.2:6402025-6402044 | MS.gene22977:intron | 25.0% |
| ! | TTATTGAACATGGGTTTAAT+TGG | - | chr7.2:6401529-6401548 | MS.gene22977:intron | 25.0% |
| ! | TTTGTGATCTTATTGAACAT+GGG | - | chr7.2:6401520-6401539 | MS.gene22977:intron | 25.0% |
| !! | TGAGATTTTGGATTGAAATA+TGG | - | chr7.2:6401887-6401906 | MS.gene22977:intron | 25.0% |
| !! | TTGGTGGTTTATAACTTATA+AGG | - | chr7.2:6402024-6402043 | MS.gene22977:intron | 25.0% |
| !!! | ATTTGTTATTGTTGAAAGGT+TGG | - | chr7.2:6401125-6401144 | MS.gene22977:intron | 25.0% |
| !!! | TGCTTTATTGCTTTTGATTT+AGG | - | chr7.2:6401694-6401713 | MS.gene22977:intron | 25.0% |
| !!! | TTGATTGAAATTGGTAATGT+AGG | - | chr7.2:6401158-6401177 | MS.gene22977:intron | 25.0% |
| AAAAATGGAGAGACATACAA+TGG | - | chr7.2:6400998-6401017 | MS.gene22977:CDS | 30.0% | |
| AAAATGGAGAGACATACAAT+GGG | - | chr7.2:6400999-6401018 | MS.gene22977:CDS | 30.0% | |
| AAATGGCATTTCAAATTGTG+TGG | + | chr7.2:6402169-6402188 | None:intergenic | 30.0% | |
| AATCCTAAATTGACTAGGAA+TGG | - | chr7.2:6401822-6401841 | MS.gene22977:intron | 30.0% | |
| ATCCTAAATTGACTAGGAAT+GGG | - | chr7.2:6401823-6401842 | MS.gene22977:intron | 30.0% | |
| CAACCGAATCTTAAAACTAA+TGG | + | chr7.2:6401374-6401393 | None:intergenic | 30.0% | |
| CTTTGTGATCTTATTGAACA+TGG | - | chr7.2:6401519-6401538 | MS.gene22977:intron | 30.0% | |
| GATAAATTCTCGTTAGATGT+TGG | + | chr7.2:6401335-6401354 | None:intergenic | 30.0% | |
| GGTGGTTTATAACTTATAAG+GGG | - | chr7.2:6402026-6402045 | MS.gene22977:intron | 30.0% | |
| GTGGTTTATAACTTATAAGG+GGG | - | chr7.2:6402027-6402046 | MS.gene22977:intron | 30.0% | |
| TTAGGTTATTGACAAAGTTC+AGG | - | chr7.2:6401712-6401731 | MS.gene22977:intron | 30.0% | |
| TTATAACTTATAAGGGGGAA+AGG | - | chr7.2:6402032-6402051 | MS.gene22977:intron | 30.0% | |
| TTGATGCATATGTAAATTGG+TGG | - | chr7.2:6402008-6402027 | MS.gene22977:intron | 30.0% | |
| ! | ACTACATCTATGTAGTGTTT+TGG | - | chr7.2:6401926-6401945 | MS.gene22977:intron | 30.0% |
| ! | TAGAGGTACAAATAACTTCT+CGG | + | chr7.2:6401063-6401082 | None:intergenic | 30.0% |
| ! | TTCTGATTGATTCTGACTTA+TGG | - | chr7.2:6402099-6402118 | MS.gene22977:CDS | 30.0% |
| ! | TTGAACTTTGTTGTAACAGT+TGG | - | chr7.2:6400967-6400986 | MS.gene22977:CDS | 30.0% |
| !! | AGTTTATTGGGTTTGCTATT+AGG | + | chr7.2:6401955-6401974 | None:intergenic | 30.0% |
| !! | ATTGTTGAAAGGTTGGTTTA+TGG | - | chr7.2:6401132-6401151 | MS.gene22977:intron | 30.0% |
| !! | TTGAAATTGGTAATGTAGGA+TGG | - | chr7.2:6401162-6401181 | MS.gene22977:intron | 30.0% |
| !!! | CTACATAGATGTAGTTTTAG+AGG | + | chr7.2:6401921-6401940 | None:intergenic | 30.0% |
| AAGCTGAGTAGGATATAAAG+TGG | - | chr7.2:6401847-6401866 | MS.gene22977:intron | 35.0% | |
| AGTGATGTCTGACTTATACA+TGG | - | chr7.2:6401655-6401674 | MS.gene22977:intron | 35.0% | |
| CCAACAAAGGGAAGTTTATT+GGG | + | chr7.2:6401967-6401986 | None:intergenic | 35.0% | |
| TAAGAAAACCATTAGCGCAT+AGG | - | chr7.2:6401493-6401512 | MS.gene22977:intron | 35.0% | |
| TATAAGGGGGAAAGGAATAT+TGG | - | chr7.2:6402040-6402059 | MS.gene22977:intron | 35.0% | |
| TATGCATCAAGATAAAGACC+AGG | + | chr7.2:6401998-6402017 | None:intergenic | 35.0% | |
| TCCAACAAAGGGAAGTTTAT+TGG | + | chr7.2:6401968-6401987 | None:intergenic | 35.0% | |
| TGAGTAGGATATAAAGTGGA+AGG | - | chr7.2:6401851-6401870 | MS.gene22977:intron | 35.0% | |
| TTCCCATTCCTAGTCAATTT+AGG | + | chr7.2:6401828-6401847 | None:intergenic | 35.0% | |
| ! | AACTTTGTTGTAACAGTTGG+TGG | - | chr7.2:6400970-6400989 | MS.gene22977:CDS | 35.0% |
| ! | TGTAGGATGGAGATAGATTT+TGG | - | chr7.2:6401175-6401194 | MS.gene22977:intron | 35.0% |
| AAAGTATGAGCACAGCCTTA+AGG | + | chr7.2:6401582-6401601 | None:intergenic | 40.0% | |
| AAATTGTGTGGATCCAACAG+GGG | + | chr7.2:6402157-6402176 | None:intergenic | 40.0% | |
| AGAGACATACAATGGGCATT+TGG | - | chr7.2:6401006-6401025 | MS.gene22977:CDS | 40.0% | |
| CAAAGTAACCTATGCGCTAA+TGG | + | chr7.2:6401504-6401523 | None:intergenic | 40.0% | |
| CAAATTGTGTGGATCCAACA+GGG | + | chr7.2:6402158-6402177 | None:intergenic | 40.0% | |
| CCCAATAAACTTCCCTTTGT+TGG | - | chr7.2:6401964-6401983 | MS.gene22977:intron | 40.0% | |
| GTTCCTGATGAGGTATGTAA+TGG | - | chr7.2:6401246-6401265 | MS.gene22977:intron | 40.0% | |
| TAACTGGAAGGCTGCATAAA+TGG | + | chr7.2:6402186-6402205 | None:intergenic | 40.0% | |
| TCAAATTGTGTGGATCCAAC+AGG | + | chr7.2:6402159-6402178 | None:intergenic | 40.0% | |
| ! | AGGATGGAGATAGATTTTGG+CGG | - | chr7.2:6401178-6401197 | MS.gene22977:intron | 40.0% |
| AAGATGCAAACTTCCCCTGT+TGG | - | chr7.2:6402141-6402160 | MS.gene22977:intron | 45.0% | |
| ATACCTCATCAGGAACTCGA+AGG | + | chr7.2:6401242-6401261 | None:intergenic | 45.0% | |
| ATGCCTGAATGCTACATACG+GGG | - | chr7.2:6401201-6401220 | MS.gene22977:intron | 45.0% | |
| CAGGTGCTAGATCCAACAAA+GGG | + | chr7.2:6401979-6401998 | None:intergenic | 45.0% | |
| CATGTGCTATCAGCGTAGAT+AGG | - | chr7.2:6401302-6401321 | MS.gene22977:intron | 45.0% | |
| CCACCATTACATACCTCATC+AGG | + | chr7.2:6401252-6401271 | None:intergenic | 45.0% | |
| CCTGATGAGGTATGTAATGG+TGG | - | chr7.2:6401249-6401268 | MS.gene22977:intron | 45.0% | |
| GATGCCTGAATGCTACATAC+GGG | - | chr7.2:6401200-6401219 | MS.gene22977:intron | 45.0% | |
| GGATGCCTGAATGCTACATA+CGG | - | chr7.2:6401199-6401218 | MS.gene22977:intron | 45.0% | |
| TAGGAATGGGAAAGCTGAGT+AGG | - | chr7.2:6401836-6401855 | MS.gene22977:intron | 45.0% | |
| TTTCCCCGTATGTAGCATTC+AGG | + | chr7.2:6401207-6401226 | None:intergenic | 45.0% | |
| ! | CCAAAATCTCAAGGCATCAC+AGG | + | chr7.2:6401878-6401897 | None:intergenic | 45.0% |
| ! | CCTGTGATGCCTTGAGATTT+TGG | - | chr7.2:6401875-6401894 | MS.gene22977:intron | 45.0% |
| ! | GCTGTGCTCATACTTTTGTC+CGG | - | chr7.2:6401586-6401605 | MS.gene22977:CDS | 45.0% |
| !! | CAGTTGGTGGAGCTGAAAAA+TGG | - | chr7.2:6400983-6401002 | MS.gene22977:CDS | 45.0% |
| !! | TTTGATGATGGTGGTGCTAG+AGG | - | chr7.2:6402374-6402393 | MS.gene22977:intron | 45.0% |
| CAGGAAGAAAAGAGCCGTAC+AGG | - | chr7.2:6401731-6401750 | MS.gene22977:intron | 50.0% | |
| CCAGGTGCTAGATCCAACAA+AGG | + | chr7.2:6401980-6401999 | None:intergenic | 50.0% | |
| CCTTTGTTGGATCTAGCACC+TGG | - | chr7.2:6401977-6401996 | MS.gene22977:intron | 50.0% | |
| GATTTACCTCTGCTTCCTCC+AGG | + | chr7.2:6402437-6402456 | None:intergenic | 50.0% | |
| GCTCGAGGGTTTAAGCCTTA+AGG | - | chr7.2:6401564-6401583 | MS.gene22977:intron | 50.0% | |
| GGGAAAAACCTTGTGCTCGA+GGG | - | chr7.2:6401550-6401569 | MS.gene22977:intron | 50.0% | |
| GTAGCTCAATGCAGAAGCTC+CGG | + | chr7.2:6401608-6401627 | None:intergenic | 50.0% | |
| TGGGAAAAACCTTGTGCTCG+AGG | - | chr7.2:6401549-6401568 | MS.gene22977:intron | 50.0% | |
| ! | AGGTGGCTTGCGATCTGAAA+AGG | + | chr7.2:6402273-6402292 | None:intergenic | 50.0% |
| ! | GGTGGCTTGCGATCTGAAAA+GGG | + | chr7.2:6402272-6402291 | None:intergenic | 50.0% |
| ! | GTACCTTCGAGTTCCTGATG+AGG | - | chr7.2:6401236-6401255 | MS.gene22977:intron | 50.0% |
| ! | TTTTCAGATCGCAAGCCACC+TGG | - | chr7.2:6402272-6402291 | MS.gene22977:CDS | 50.0% |
| !! | GACGCCAAACAAAAGGCACT+GGG | - | chr7.2:6402345-6402364 | MS.gene22977:intron | 50.0% |
| !!! | ACTGGGCGTGGTTTTGATGA+TGG | - | chr7.2:6402362-6402381 | MS.gene22977:intron | 50.0% |
| ACGTGGTAGGGGTAGAGGTA+GGG | - | chr7.2:6402301-6402320 | MS.gene22977:CDS | 55.0% | |
| GGCTTAAACCCTCGAGCACA+AGG | + | chr7.2:6401561-6401580 | None:intergenic | 55.0% | |
| TTCCTCCAGGCTTTCCACCT+TGG | + | chr7.2:6402424-6402443 | None:intergenic | 55.0% | |
| ! | CACGCCCAGTGCCTTTTGTT+TGG | + | chr7.2:6402352-6402371 | None:intergenic | 55.0% |
| ! | GGACGCCAAACAAAAGGCAC+TGG | - | chr7.2:6402344-6402363 | MS.gene22977:intron | 55.0% |
| !! | CAAACAAAAGGCACTGGGCG+TGG | - | chr7.2:6402350-6402369 | MS.gene22977:intron | 55.0% |
| !! | GCCTTTTGTTTGGCGTCCAC+CGG | + | chr7.2:6402342-6402361 | None:intergenic | 55.0% |
| !!! | GGGCGTGGTTTTGATGATGG+TGG | - | chr7.2:6402365-6402384 | MS.gene22977:intron | 55.0% |
| ACCTGGTGTGGGACGTGGTA+GGG | - | chr7.2:6402289-6402308 | MS.gene22977:CDS | 60.0% | |
| AGAGGTAGGGAGGATGCTGC+TGG | - | chr7.2:6402314-6402333 | MS.gene22977:CDS | 60.0% | |
| AGATCGCAAGCCACCTGGTG+TGG | - | chr7.2:6402277-6402296 | MS.gene22977:CDS | 60.0% | |
| AGCCAAGGTGGAAAGCCTGG+AGG | - | chr7.2:6402419-6402438 | MS.gene22977:intron | 60.0% | |
| GACGTGGTAGGGGTAGAGGT+AGG | - | chr7.2:6402300-6402319 | MS.gene22977:CDS | 60.0% | |
| GATCGCAAGCCACCTGGTGT+GGG | - | chr7.2:6402278-6402297 | MS.gene22977:CDS | 60.0% | |
| GCCGGTGGACGCCAAACAAA+AGG | - | chr7.2:6402338-6402357 | MS.gene22977:intron | 60.0% | |
| GCTAGCCAAGGTGGAAAGCC+TGG | - | chr7.2:6402416-6402435 | MS.gene22977:intron | 60.0% | |
| GGAAAGCCTGGAGGAAGCAG+AGG | - | chr7.2:6402428-6402447 | MS.gene22977:intron | 60.0% | |
| TGGTAGGGGTAGAGGTAGGG+AGG | - | chr7.2:6402304-6402323 | MS.gene22977:CDS | 60.0% | |
| ! | GATGGTGGTGCTAGAGGAGC+CGG | - | chr7.2:6402380-6402399 | MS.gene22977:intron | 60.0% |
| AAGCCACCTGGTGTGGGACG+TGG | - | chr7.2:6402284-6402303 | MS.gene22977:CDS | 65.0% | |
| AGGGAGGATGCTGCTGGTGC+CGG | - | chr7.2:6402320-6402339 | MS.gene22977:intron | 65.0% | |
| CACCTGGTGTGGGACGTGGT+AGG | - | chr7.2:6402288-6402307 | MS.gene22977:CDS | 65.0% | |
| CCTGGTGTGGGACGTGGTAG+GGG | - | chr7.2:6402290-6402309 | MS.gene22977:CDS | 65.0% | |
| CTACCACGTCCCACACCAGG+TGG | + | chr7.2:6402290-6402309 | None:intergenic | 65.0% | |
| GTGGGACGTGGTAGGGGTAG+AGG | - | chr7.2:6402296-6402315 | MS.gene22977:CDS | 65.0% | |
| ! | CACCTTGGCTAGCCCTGCCT+CGG | + | chr7.2:6402409-6402428 | None:intergenic | 65.0% |
| CCCCTACCACGTCCCACACC+AGG | + | chr7.2:6402293-6402312 | None:intergenic | 70.0% | |
| ! | GAGGATGCTGCTGGTGCCGG+TGG | - | chr7.2:6402323-6402342 | MS.gene22977:intron | 70.0% |
| ! | GGTGGTGCTAGAGGAGCCGG+AGG | - | chr7.2:6402383-6402402 | MS.gene22977:intron | 70.0% |
| !! | CGAGGCAGGGCTAGCCAAGG+TGG | - | chr7.2:6402407-6402426 | MS.gene22977:intron | 70.0% |
| AGGAGCCGGAGGCCGAGGCA+GGG | - | chr7.2:6402394-6402413 | MS.gene22977:intron | 75.0% | |
| GCTAGAGGAGCCGGAGGCCG+AGG | - | chr7.2:6402389-6402408 | MS.gene22977:intron | 75.0% | |
| GCTAGCCCTGCCTCGGCCTC+CGG | + | chr7.2:6402402-6402421 | None:intergenic | 75.0% | |
| !! | GGCCGAGGCAGGGCTAGCCA+AGG | - | chr7.2:6402404-6402423 | MS.gene22977:intron | 75.0% |
| ! | GAGGAGCCGGAGGCCGAGGC+AGG | - | chr7.2:6402393-6402412 | MS.gene22977:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 6400863 | 6402460 | 6400863 | ID=MS.gene22977 |
| chr7.2 | mRNA | 6400863 | 6402460 | 6400863 | ID=MS.gene22977.t1;Parent=MS.gene22977 |
| chr7.2 | exon | 6402458 | 6402460 | 6402458 | ID=MS.gene22977.t1.exon1;Parent=MS.gene22977.t1 |
| chr7.2 | CDS | 6402458 | 6402460 | 6402458 | ID=cds.MS.gene22977.t1;Parent=MS.gene22977.t1 |
| chr7.2 | exon | 6402239 | 6402337 | 6402239 | ID=MS.gene22977.t1.exon2;Parent=MS.gene22977.t1 |
| chr7.2 | CDS | 6402239 | 6402337 | 6402239 | ID=cds.MS.gene22977.t1;Parent=MS.gene22977.t1 |
| chr7.2 | exon | 6402066 | 6402143 | 6402066 | ID=MS.gene22977.t1.exon3;Parent=MS.gene22977.t1 |
| chr7.2 | CDS | 6402066 | 6402143 | 6402066 | ID=cds.MS.gene22977.t1;Parent=MS.gene22977.t1 |
| chr7.2 | exon | 6401571 | 6401607 | 6401571 | ID=MS.gene22977.t1.exon4;Parent=MS.gene22977.t1 |
| chr7.2 | CDS | 6401571 | 6401607 | 6401571 | ID=cds.MS.gene22977.t1;Parent=MS.gene22977.t1 |
| chr7.2 | exon | 6400863 | 6401044 | 6400863 | ID=MS.gene22977.t1.exon5;Parent=MS.gene22977.t1 |
| chr7.2 | CDS | 6400863 | 6401044 | 6400863 | ID=cds.MS.gene22977.t1;Parent=MS.gene22977.t1 |
| Gene Sequence |
| Protein sequence |
