Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23142.t1 | XP_013450438.1 | 99.5 | 411 | 2 | 0 | 1 | 411 | 1 | 411 | 2.30E-241 | 844.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23142.t1 | F4I562 | 78.3 | 414 | 86 | 1 | 1 | 410 | 1 | 414 | 9.9e-201 | 700.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23142.t1 | A0A072U533 | 99.5 | 411 | 2 | 0 | 1 | 411 | 1 | 411 | 1.7e-241 | 844.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050768 | MS.gene23142 | 0.999814 | 0.00E+00 | -1.69E-46 |
| MS.gene050771 | MS.gene23142 | 0.983773 | 1.14E-158 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23142 | MS.gene010105 | PPI |
| MS.gene23142 | MS.gene29199 | PPI |
| MS.gene23142 | MS.gene86178 | PPI |
| MS.gene23142 | MS.gene067937 | PPI |
| MS.gene23142 | MS.gene44324 | PPI |
| MS.gene23142 | MS.gene050001 | PPI |
| MS.gene23142 | MS.gene21470 | PPI |
| MS.gene23142 | MS.gene056431 | PPI |
| MS.gene23142 | MS.gene09656 | PPI |
| MS.gene23142 | MS.gene068109 | PPI |
| MS.gene23142 | MS.gene027687 | PPI |
| MS.gene23142 | MS.gene059672 | PPI |
| MS.gene23142 | MS.gene015312 | PPI |
| MS.gene23142 | MS.gene008864 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23142.t1 | MTR_7g111870 | 99.513 | 411 | 2 | 0 | 1 | 411 | 1 | 411 | 0.0 | 848 |
| MS.gene23142.t1 | MTR_7g111870 | 99.697 | 330 | 1 | 0 | 1 | 330 | 1 | 330 | 0.0 | 682 |
| MS.gene23142.t1 | MTR_5g033500 | 26.067 | 445 | 266 | 11 | 4 | 410 | 7 | 426 | 7.15e-46 | 164 |
| MS.gene23142.t1 | MTR_8g069565 | 26.424 | 439 | 272 | 12 | 4 | 410 | 7 | 426 | 1.30e-45 | 163 |
| MS.gene23142.t1 | MTR_3g112190 | 27.252 | 444 | 286 | 9 | 1 | 410 | 1 | 441 | 2.25e-44 | 160 |
| MS.gene23142.t1 | MTR_5g014330 | 29.315 | 365 | 220 | 11 | 76 | 410 | 81 | 437 | 2.38e-44 | 160 |
| MS.gene23142.t1 | MTR_5g066050 | 27.753 | 454 | 279 | 11 | 1 | 410 | 1 | 449 | 1.16e-43 | 158 |
| MS.gene23142.t1 | MTR_5g066050 | 27.912 | 455 | 278 | 11 | 1 | 410 | 1 | 450 | 3.24e-43 | 157 |
| MS.gene23142.t1 | MTR_5g014330 | 29.448 | 326 | 193 | 10 | 76 | 372 | 81 | 398 | 1.71e-39 | 146 |
| MS.gene23142.t1 | MTR_5g033500 | 27.358 | 318 | 181 | 6 | 4 | 293 | 7 | 302 | 3.99e-39 | 144 |
| MS.gene23142.t1 | MTR_4g022790 | 52.756 | 127 | 12 | 2 | 113 | 239 | 3 | 81 | 1.85e-31 | 115 |
| MS.gene23142.t1 | MTR_7g014365 | 44.828 | 116 | 32 | 3 | 108 | 223 | 24 | 107 | 5.92e-17 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23142.t1 | AT1G56590 | 78.261 | 414 | 86 | 1 | 1 | 410 | 1 | 414 | 0.0 | 703 |
| MS.gene23142.t1 | AT1G60780 | 29.494 | 356 | 212 | 8 | 79 | 410 | 86 | 426 | 3.13e-47 | 167 |
| MS.gene23142.t1 | AT1G10730 | 26.376 | 436 | 276 | 11 | 4 | 410 | 7 | 426 | 1.85e-44 | 160 |
| MS.gene23142.t1 | AT4G24550 | 27.974 | 454 | 278 | 12 | 1 | 410 | 2 | 450 | 4.86e-44 | 159 |
| MS.gene23142.t1 | AT4G24550 | 28.756 | 386 | 236 | 9 | 1 | 349 | 2 | 385 | 4.66e-43 | 155 |
| MS.gene23142.t1 | AT4G24550 | 29.333 | 375 | 226 | 9 | 1 | 338 | 2 | 374 | 1.41e-42 | 154 |
| MS.gene23142.t1 | AT5G46630 | 28.767 | 365 | 222 | 11 | 76 | 410 | 81 | 437 | 1.38e-41 | 152 |
| MS.gene23142.t1 | AT5G46630 | 29.023 | 348 | 210 | 10 | 76 | 394 | 81 | 420 | 2.38e-40 | 149 |
Find 0 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGATTAAATTGAAAAT+TGG | + | 51771:9644-9663 | None:intergenic | 10.0% |
| !! | AATTGATTAAATTGAAAATT+GGG | + | 51771:9643-9662 | None:intergenic | 10.0% |
| !!! | TTTTATTTTCTTAAAATTCT+GGG | - | 51771:12226-12245 | MS.gene23142:intron | 10.0% |
| !!! | TTTTTATTTTCTTAAAATTC+TGG | - | 51771:12225-12244 | MS.gene23142:intron | 10.0% |
| !! | AAAAACTTGAAAAAGATAAT+GGG | + | 51771:9801-9820 | None:intergenic | 15.0% |
| !! | AATTTAATGTGTATAAGTTA+AGG | + | 51771:11450-11469 | None:intergenic | 15.0% |
| !!! | TTGTTATTATGTTTGATAAA+TGG | - | 51771:11523-11542 | MS.gene23142:CDS | 15.0% |
| !! | AACCAAATAAATGATGAAAA+CGG | - | 51771:10358-10377 | MS.gene23142:CDS | 20.0% |
| !! | AATTTAAGCTAATGAATTAC+AGG | - | 51771:12095-12114 | MS.gene23142:intron | 20.0% |
| !! | ACTAACAACATATGATTATT+GGG | - | 51771:10092-10111 | MS.gene23142:CDS | 20.0% |
| !! | AGAAAAGAAACTAAATATCA+CGG | + | 51771:11674-11693 | None:intergenic | 20.0% |
| !! | AGCAATTATGTTATTAGATT+CGG | + | 51771:10328-10347 | None:intergenic | 20.0% |
| !! | ATCTACATAAACTTCATTAT+TGG | + | 51771:10904-10923 | None:intergenic | 20.0% |
| !! | GAAAAACTTGAAAAAGATAA+TGG | + | 51771:9802-9821 | None:intergenic | 20.0% |
| !! | TAATAACATAATTGCTATAG+AGG | - | 51771:10332-10351 | MS.gene23142:CDS | 20.0% |
| !!! | AATTTATAGTAAAGCATCTT+AGG | - | 51771:11466-11485 | MS.gene23142:intron | 20.0% |
| !!! | CTTAACTTTGACAATTTTAT+GGG | - | 51771:10988-11007 | MS.gene23142:intron | 20.0% |
| !!! | TCTTAACTTTGACAATTTTA+TGG | - | 51771:10987-11006 | MS.gene23142:intron | 20.0% |
| !!! | TTTGATTTGTTGTTTTGTTT+AGG | - | 51771:10651-10670 | MS.gene23142:intron | 20.0% |
| ! | AAAATTGGGAATTGAAGAAA+AGG | + | 51771:9629-9648 | None:intergenic | 25.0% |
| ! | AACAAAACAACAAATCAAAG+TGG | + | 51771:10650-10669 | None:intergenic | 25.0% |
| ! | AAGACTTTGCTAACAATATT+TGG | + | 51771:10786-10805 | None:intergenic | 25.0% |
| ! | AATAACAAAGTTGTCTTTGA+TGG | + | 51771:10023-10042 | None:intergenic | 25.0% |
| ! | AATTGAAGAAAAGGAAAGAA+GGG | + | 51771:9620-9639 | None:intergenic | 25.0% |
| ! | ACAAAACAACAAATCAAAGT+GGG | + | 51771:10649-10668 | None:intergenic | 25.0% |
| ! | AGACAGTTAAATAATACAAC+TGG | - | 51771:10197-10216 | MS.gene23142:intron | 25.0% |
| ! | AGTTAACATTCTTTCTAACA+AGG | - | 51771:12455-12474 | MS.gene23142:intron | 25.0% |
| ! | ATAAAATTTCAGCCGATATA+AGG | + | 51771:11783-11802 | None:intergenic | 25.0% |
| ! | ATAACTTAGTCAAATCCTTA+CGG | - | 51771:11239-11258 | MS.gene23142:intron | 25.0% |
| ! | ATGAAAGAAGTTGAAAGAAA+TGG | + | 51771:11858-11877 | None:intergenic | 25.0% |
| ! | ATTATGTTTGATAAATGGCA+AGG | - | 51771:11528-11547 | MS.gene23142:CDS | 25.0% |
| ! | ATTTGACTAAGTTATACGTT+GGG | + | 51771:11234-11253 | None:intergenic | 25.0% |
| ! | CAATAATCATATGTTGTTAG+TGG | + | 51771:10093-10112 | None:intergenic | 25.0% |
| ! | CACAAATGAAAGAATTTGAT+TGG | + | 51771:12062-12081 | None:intergenic | 25.0% |
| ! | CACTAACAACATATGATTAT+TGG | - | 51771:10091-10110 | MS.gene23142:CDS | 25.0% |
| ! | GATGTAATCAATGATTATCT+TGG | - | 51771:9980-9999 | MS.gene23142:CDS | 25.0% |
| ! | GGAACTAAAAATGAATTGAA+TGG | + | 51771:9946-9965 | None:intergenic | 25.0% |
| !! | AACCGTTTTCATCATTTATT+TGG | + | 51771:10363-10382 | None:intergenic | 25.0% |
| !! | AAGGTACTTACTTAATAAAC+AGG | - | 51771:12474-12493 | MS.gene23142:intron | 25.0% |
| !! | CATACTTGTTGCTAAAAATT+TGG | - | 51771:11875-11894 | MS.gene23142:intron | 25.0% |
| !! | CTAAAAATTTGGTTCATTCA+GGG | - | 51771:11886-11905 | MS.gene23142:intron | 25.0% |
| !!! | AATATTGACTTCCCAAATAA+CGG | + | 51771:12164-12183 | None:intergenic | 25.0% |
| !!! | CAAAACTTCATTTCTAGTAA+AGG | - | 51771:11633-11652 | MS.gene23142:CDS | 25.0% |
| !!! | CAACTTTGTTATTGTTTATG+AGG | - | 51771:10030-10049 | MS.gene23142:CDS | 25.0% |
| !!! | TCATTTTTAGTTCCTTTGTA+GGG | - | 51771:9952-9971 | MS.gene23142:intron | 25.0% |
| !!! | TTCATTTTTAGTTCCTTTGT+AGG | - | 51771:9951-9970 | MS.gene23142:intron | 25.0% |
| !!! | TTTGTTTCTTTTGGATTGAT+CGG | - | 51771:10432-10451 | MS.gene23142:CDS | 25.0% |
| AAATGGATGCAACAATAAAC+AGG | - | 51771:10934-10953 | MS.gene23142:intron | 30.0% | |
| AACGGTTTCAAATCCTAATT+AGG | + | 51771:12146-12165 | None:intergenic | 30.0% | |
| AAGAGTCAAAAGTAGAAGAA+AGG | + | 51771:10568-10587 | None:intergenic | 30.0% | |
| ACAACATATGATTATTGGGT+TGG | - | 51771:10096-10115 | MS.gene23142:CDS | 30.0% | |
| ACTTCATTATTGGCATACTT+AGG | + | 51771:10894-10913 | None:intergenic | 30.0% | |
| ACTTTGCTAACAATATTTGG+CGG | + | 51771:10783-10802 | None:intergenic | 30.0% | |
| ATAAGGAGATAGTTGTGTTA+GGG | - | 51771:11200-11219 | MS.gene23142:intron | 30.0% | |
| ATAATAATGCCTCCTTGAAA+AGG | + | 51771:11129-11148 | None:intergenic | 30.0% | |
| ATAGATTATGTGTTCGACTT+CGG | - | 51771:11101-11120 | MS.gene23142:intron | 30.0% | |
| ATATTAGGTTCTGTAGTTAG+TGG | + | 51771:10741-10760 | None:intergenic | 30.0% | |
| ATCTGACTATTTAGACTTGA+TGG | + | 51771:12535-12554 | None:intergenic | 30.0% | |
| CAAAACAACAAATCAAAGTG+GGG | + | 51771:10648-10667 | None:intergenic | 30.0% | |
| CATATATGAATGATTTCAGC+TGG | + | 51771:11503-11522 | None:intergenic | 30.0% | |
| CTAAAATCCACTTGAAATGT+GGG | + | 51771:12719-12738 | None:intergenic | 30.0% | |
| CTTCATTATTGGCATACTTA+GGG | + | 51771:10893-10912 | None:intergenic | 30.0% | |
| GAACTTGTGAAACCTTATAT+CGG | - | 51771:11768-11787 | MS.gene23142:intron | 30.0% | |
| GAATTGAAGAAAAGGAAAGA+AGG | + | 51771:9621-9640 | None:intergenic | 30.0% | |
| GATTTGACTAAGTTATACGT+TGG | + | 51771:11235-11254 | None:intergenic | 30.0% | |
| GCAAATGAAAGAGTTAAATC+AGG | + | 51771:11977-11996 | None:intergenic | 30.0% | |
| GTAATCAATGATTATCTTGG+CGG | - | 51771:9983-10002 | MS.gene23142:CDS | 30.0% | |
| GTGTGTTAAAATCTGTTTCA+TGG | - | 51771:12192-12211 | MS.gene23142:intron | 30.0% | |
| TATAAGGAGATAGTTGTGTT+AGG | - | 51771:11199-11218 | MS.gene23142:intron | 30.0% | |
| TGCATAAATACAGACTACTA+AGG | + | 51771:11835-11854 | None:intergenic | 30.0% | |
| TGTAGATCTTGTAGAACAAA+TGG | - | 51771:10917-10936 | MS.gene23142:intron | 30.0% | |
| TTCCTATGAATTGCAAATCA+TGG | + | 51771:9900-9919 | None:intergenic | 30.0% | |
| TTGAAAACTATTTCCCTGAT+TGG | - | 51771:11335-11354 | MS.gene23142:intron | 30.0% | |
| ! | AACTGTGGCTTTACATATAT+TGG | + | 51771:12294-12313 | None:intergenic | 30.0% |
| ! | ACTGTGGCTTTACATATATT+GGG | + | 51771:12293-12312 | None:intergenic | 30.0% |
| ! | AGGATTTGAAACCGTTATTT+GGG | - | 51771:12150-12169 | MS.gene23142:intron | 30.0% |
| ! | ATTAGCTTAAATTGTCCATC+AGG | + | 51771:12088-12107 | None:intergenic | 30.0% |
| ! | GCTAAAAATTTGGTTCATTC+AGG | - | 51771:11885-11904 | MS.gene23142:intron | 30.0% |
| ! | GTTTTTGTTAATGTAGCTGT+TGG | - | 51771:10692-10711 | MS.gene23142:intron | 30.0% |
| ! | TAGGATTTGAAACCGTTATT+TGG | - | 51771:12149-12168 | MS.gene23142:intron | 30.0% |
| !! | ACTTGAAAAAGATAATGGGT+TGG | + | 51771:9797-9816 | None:intergenic | 30.0% |
| !! | TATTTTTGCACCTCTAATCT+GGG | - | 51771:11377-11396 | MS.gene23142:intron | 30.0% |
| AAAACCTTTGTAGAAACGGT+AGG | + | 51771:12801-12820 | None:intergenic | 35.0% | |
| AAACCTTTGTAGAAACGGTA+GGG | + | 51771:12800-12819 | None:intergenic | 35.0% | |
| AAGCTGAAACTGAACGTTAA+CGG | + | 51771:12391-12410 | None:intergenic | 35.0% | |
| ACTAATGTTCCAGACATTGA+GGG | + | 51771:12662-12681 | None:intergenic | 35.0% | |
| AGAATTTGATTGGATTCCCA+AGG | + | 51771:12052-12071 | None:intergenic | 35.0% | |
| AGGTTATACAGTAACCAATC+AGG | + | 51771:11352-11371 | None:intergenic | 35.0% | |
| ATCATCTCTTGCAGGATATT+AGG | + | 51771:10756-10775 | None:intergenic | 35.0% | |
| ATCCCAAAACCAGTTACAAA+TGG | + | 51771:9735-9754 | None:intergenic | 35.0% | |
| ATTATTGGCATACTTAGGGT+CGG | + | 51771:10889-10908 | None:intergenic | 35.0% | |
| CCTAAAATCCACTTGAAATG+TGG | + | 51771:12720-12739 | None:intergenic | 35.0% | |
| CTATGTCTGATGTCCTAATT+AGG | - | 51771:12130-12149 | MS.gene23142:intron | 35.0% | |
| CTCGAAAACCTTTGTAGAAA+CGG | + | 51771:12805-12824 | None:intergenic | 35.0% | |
| GCATTGAAACTTCAGATTGA+AGG | + | 51771:10539-10558 | None:intergenic | 35.0% | |
| GGCATGTATTATTACCTCAA+TGG | + | 51771:9879-9898 | None:intergenic | 35.0% | |
| GGTTATACAGTAACCAATCA+GGG | + | 51771:11351-11370 | None:intergenic | 35.0% | |
| GTGTATAAGTTAAGGACACA+AGG | + | 51771:11442-11461 | None:intergenic | 35.0% | |
| TCTGATAGATCACGATGTAA+AGG | + | 51771:12598-12617 | None:intergenic | 35.0% | |
| TGCCAACCATTACATTAAGA+CGG | + | 51771:12338-12357 | None:intergenic | 35.0% | |
| TTGGATGAGATGATAGACAA+TGG | - | 51771:10711-10730 | MS.gene23142:intron | 35.0% | |
| TTTCAGAGCAAACGTTACAA+GGG | + | 51771:10593-10612 | None:intergenic | 35.0% | |
| ! | AAATTTGGTTCATTCAGGGA+TGG | - | 51771:11890-11909 | MS.gene23142:intron | 35.0% |
| ! | AATAACAGGTTGTTGCTTGA+AGG | + | 51771:9768-9787 | None:intergenic | 35.0% |
| ! | ATTCTAGAGAAACAACTCAC+TGG | - | 51771:9692-9711 | MS.gene23142:CDS | 35.0% |
| ! | ATTTTTCTTCTCTCCGATTC+CGG | - | 51771:9580-9599 | MS.gene23142:CDS | 35.0% |
| ! | CTGTGGCTTTACATATATTG+GGG | + | 51771:12292-12311 | None:intergenic | 35.0% |
| ! | TGCCATGATTTGCAATTCAT+AGG | - | 51771:9895-9914 | MS.gene23142:intron | 35.0% |
| ! | TTTTCAGAGCAAACGTTACA+AGG | + | 51771:10594-10613 | None:intergenic | 35.0% |
| ! | TTTTGGATTGATCGGAGTAT+AGG | - | 51771:10440-10459 | MS.gene23142:CDS | 35.0% |
| !! | CCACATTTCAAGTGGATTTT+AGG | - | 51771:12717-12736 | MS.gene23142:CDS | 35.0% |
| !! | GTATTTTTGCACCTCTAATC+TGG | - | 51771:11376-11395 | MS.gene23142:intron | 35.0% |
| !! | TTGTAGTCATTGTGCCATTT+GGG | - | 51771:10403-10422 | MS.gene23142:CDS | 35.0% |
| !!! | CAAGTGGATTTTAGGATCAT+GGG | - | 51771:12725-12744 | MS.gene23142:CDS | 35.0% |
| !!! | CTCCATTTGTAACTGGTTTT+GGG | - | 51771:9730-9749 | MS.gene23142:CDS | 35.0% |
| !!! | CTTTTTCAAGTTTTTCGCGA+TGG | - | 51771:9806-9825 | MS.gene23142:intron | 35.0% |
| !!! | TCAAGTGGATTTTAGGATCA+TGG | - | 51771:12724-12743 | MS.gene23142:CDS | 35.0% |
| AAGGCCGAAATCTAACACAA+GGG | + | 51771:12033-12052 | None:intergenic | 40.0% | |
| AGATCAGCTGATAAGATGCA+AGG | + | 51771:12417-12436 | None:intergenic | 40.0% | |
| AGATGTACCAACCAAAGAGT+AGG | - | 51771:11561-11580 | MS.gene23142:CDS | 40.0% | |
| AGCTTAAATTGTCCATCAGG+AGG | + | 51771:12085-12104 | None:intergenic | 40.0% | |
| AGTTGAAATGCCACCTTTGA+TGG | - | 51771:9853-9872 | MS.gene23142:intron | 40.0% | |
| ATAGCAGGACTAACATAGGT+AGG | + | 51771:11156-11175 | None:intergenic | 40.0% | |
| ATCTCCTTATATCCGAGCTT+GGG | + | 51771:11190-11209 | None:intergenic | 40.0% | |
| ATGCATAGCAGGACTAACAT+AGG | + | 51771:11160-11179 | None:intergenic | 40.0% | |
| ATGTACCAACCAAAGAGTAG+GGG | - | 51771:11563-11582 | MS.gene23142:CDS | 40.0% | |
| ATTACCTCAATGGCCATCAA+AGG | + | 51771:9869-9888 | None:intergenic | 40.0% | |
| ATTAGGACATCAGACATAGC+TGG | + | 51771:12129-12148 | None:intergenic | 40.0% | |
| ATTAGTGCTTGAGACTGGAA+TGG | - | 51771:12676-12695 | MS.gene23142:CDS | 40.0% | |
| CAAGTAAATTCCCACATCAC+TGG | - | 51771:11947-11966 | MS.gene23142:intron | 40.0% | |
| CACTAATGTTCCAGACATTG+AGG | + | 51771:12663-12682 | None:intergenic | 40.0% | |
| CCGTCCACAACAATAACAAT+CGG | - | 51771:10501-10520 | MS.gene23142:CDS | 40.0% | |
| CGATCTTGATTCATTCAGAG+AGG | - | 51771:9667-9686 | MS.gene23142:CDS | 40.0% | |
| CGTATTTGATTCATGCCGTA+AGG | + | 51771:11257-11276 | None:intergenic | 40.0% | |
| CTAATGTTCCAGACATTGAG+GGG | + | 51771:12661-12680 | None:intergenic | 40.0% | |
| CTCACATCATCAAGGATTGA+AGG | + | 51771:12004-12023 | None:intergenic | 40.0% | |
| CTGGTGAAGTGTGAGATTAA+TGG | - | 51771:11917-11936 | MS.gene23142:intron | 40.0% | |
| CTGTTCAGTAAGTCAGCAAA+AGG | + | 51771:11724-11743 | None:intergenic | 40.0% | |
| CTTTGAGCAAAGTTATGAGG+AGG | + | 51771:10480-10499 | None:intergenic | 40.0% | |
| GAAACAAAGTCAAGCCCAAA+TGG | + | 51771:10420-10439 | None:intergenic | 40.0% | |
| GAAGTGTGAGATTAATGGTG+AGG | - | 51771:11922-11941 | MS.gene23142:intron | 40.0% | |
| GACATGCCGTCTTAATGTAA+TGG | - | 51771:12329-12348 | MS.gene23142:intron | 40.0% | |
| GATGTACCAACCAAAGAGTA+GGG | - | 51771:11562-11581 | MS.gene23142:CDS | 40.0% | |
| GGACTTTGAGCAAAGTTATG+AGG | + | 51771:10483-10502 | None:intergenic | 40.0% | |
| TAATGTTCCAGACATTGAGG+GGG | + | 51771:12660-12679 | None:intergenic | 40.0% | |
| TACAAATGGAGCGATCAACA+CGG | + | 51771:9721-9740 | None:intergenic | 40.0% | |
| TATCTCCTTATATCCGAGCT+TGG | + | 51771:11191-11210 | None:intergenic | 40.0% | |
| TCCACCCTTGTGTTAGATTT+CGG | - | 51771:12026-12045 | MS.gene23142:intron | 40.0% | |
| TGAATGATTTCAGCTGGCTA+CGG | + | 51771:11497-11516 | None:intergenic | 40.0% | |
| TGACTTCAAATTCACCTGCT+CGG | + | 51771:12835-12854 | None:intergenic | 40.0% | |
| TGATCTATCAGACATGCACT+TGG | - | 51771:12606-12625 | MS.gene23142:CDS | 40.0% | |
| TGCCGTCTTAATGTAATGGT+TGG | - | 51771:12333-12352 | MS.gene23142:intron | 40.0% | |
| TGGTCTGCAAATAGACAAAC+TGG | - | 51771:12760-12779 | MS.gene23142:intron | 40.0% | |
| TGTCACACACTGATACATGT+CGG | - | 51771:10142-10161 | MS.gene23142:CDS | 40.0% | |
| TGTCTTTCCCACATTTCAAG+TGG | - | 51771:12709-12728 | MS.gene23142:CDS | 40.0% | |
| TTACATCAGCTACCCTACAA+AGG | + | 51771:9967-9986 | None:intergenic | 40.0% | |
| TTAGTTATCCCCCTACTCTT+TGG | + | 51771:11575-11594 | None:intergenic | 40.0% | |
| TTGATCGCTCCATTTGTAAC+TGG | - | 51771:9723-9742 | MS.gene23142:CDS | 40.0% | |
| TTGGTTACTGTATAACCTGC+TGG | - | 51771:11354-11373 | MS.gene23142:intron | 40.0% | |
| TTGTGTTAGATTTCGGCCTT+GGG | - | 51771:12033-12052 | MS.gene23142:intron | 40.0% | |
| ! | AAAGCTTTATCCCACTGAGT+AGG | + | 51771:11291-11310 | None:intergenic | 40.0% |
| ! | AAAGTCTTAAGCGTTGTGAC+TGG | - | 51771:10798-10817 | MS.gene23142:intron | 40.0% |
| ! | AAGCTTTATCCCACTGAGTA+GGG | + | 51771:11290-11309 | None:intergenic | 40.0% |
| ! | CCGATTGTTATTGTTGTGGA+CGG | + | 51771:10504-10523 | None:intergenic | 40.0% |
| ! | CTTGTAGTCATTGTGCCATT+TGG | - | 51771:10402-10421 | MS.gene23142:CDS | 40.0% |
| ! | GTGTCCGATTGTTATTGTTG+TGG | + | 51771:10508-10527 | None:intergenic | 40.0% |
| ! | TTTTTCTTCTCTCCGATTCC+GGG | - | 51771:9581-9600 | MS.gene23142:CDS | 40.0% |
| !! | CTTCAATCCTTGATGATGTG+AGG | - | 51771:12002-12021 | MS.gene23142:intron | 40.0% |
| !! | GCTCCATTTGTAACTGGTTT+TGG | - | 51771:9729-9748 | MS.gene23142:CDS | 40.0% |
| !! | GGGCTTGACTTTGTTTCTTT+TGG | - | 51771:10423-10442 | MS.gene23142:CDS | 40.0% |
| !!! | CTTTTGCTGACTTACTGAAC+AGG | - | 51771:11722-11741 | MS.gene23142:intron | 40.0% |
| !!! | TCGCGATGGAATCACTTTTT+TGG | - | 51771:9820-9839 | MS.gene23142:intron | 40.0% |
| AAGGGTTAACTGAACTCACC+CGG | + | 51771:9602-9621 | None:intergenic | 45.0% | |
| AATCAGGTAGACCAGTGATG+TGG | + | 51771:11961-11980 | None:intergenic | 45.0% | |
| ACGGAATCAACTGTCTTTCC+AGG | + | 51771:12372-12391 | None:intergenic | 45.0% | |
| ACTGATACATGTCGGTGCAA+TGG | - | 51771:10150-10169 | MS.gene23142:intron | 45.0% | |
| ATAAATGGCAAGGTACGCAG+CGG | - | 51771:11538-11557 | MS.gene23142:CDS | 45.0% | |
| ATCAGGTAGACCAGTGATGT+GGG | + | 51771:11960-11979 | None:intergenic | 45.0% | |
| ATGAGGAGGAGATGACAGAT+AGG | + | 51771:10466-10485 | None:intergenic | 45.0% | |
| CAAGGCCGAAATCTAACACA+AGG | + | 51771:12034-12053 | None:intergenic | 45.0% | |
| CTTCAGATTGAAGGTGAGAC+TGG | + | 51771:10530-10549 | None:intergenic | 45.0% | |
| CTTGTGTTAGATTTCGGCCT+TGG | - | 51771:12032-12051 | MS.gene23142:intron | 45.0% | |
| CTTTCATTTGTGCCTCCTGA+TGG | - | 51771:12070-12089 | MS.gene23142:intron | 45.0% | |
| GACTTCAAATTCACCTGCTC+GGG | + | 51771:12834-12853 | None:intergenic | 45.0% | |
| GCTGATCTGACTTCAACTCA+TGG | - | 51771:12429-12448 | MS.gene23142:CDS | 45.0% | |
| GGAACATTAGTGCTTGAGAC+TGG | - | 51771:12671-12690 | MS.gene23142:CDS | 45.0% | |
| GTACCCTACCGTTTCTACAA+AGG | - | 51771:12794-12813 | MS.gene23142:intron | 45.0% | |
| GTTGGCATGAGAAATGATCC+TGG | - | 51771:12351-12370 | MS.gene23142:intron | 45.0% | |
| TAACTGAACTCACCCGGAAT+CGG | + | 51771:9596-9615 | None:intergenic | 45.0% | |
| TCAGCTGATAAGATGCAAGG+AGG | + | 51771:12414-12433 | None:intergenic | 45.0% | |
| TGAAAATGTTGCCTGAGTGC+TGG | - | 51771:10608-10627 | MS.gene23142:intron | 45.0% | |
| TGTACCAACCAAAGAGTAGG+GGG | - | 51771:11564-11583 | MS.gene23142:CDS | 45.0% | |
| TTAGTCCTGCTATGCATAGC+AGG | - | 51771:11163-11182 | MS.gene23142:intron | 45.0% | |
| TTAGTGCCAACCCAGATTAG+AGG | + | 51771:11390-11409 | None:intergenic | 45.0% | |
| TTATCCCCCTACTCTTTGGT+TGG | + | 51771:11571-11590 | None:intergenic | 45.0% | |
| TTCATTCAGGGATGGTACTC+TGG | - | 51771:11898-11917 | MS.gene23142:intron | 45.0% | |
| TTTATCCCACTGAGTAGGGT+CGG | + | 51771:11286-11305 | None:intergenic | 45.0% | |
| TTTGCACCTCTAATCTGGGT+TGG | - | 51771:11381-11400 | MS.gene23142:intron | 45.0% | |
| ! | AAGCCACAGTTGACTTCAGA+TGG | - | 51771:12303-12322 | MS.gene23142:intron | 45.0% |
| ! | AGAGGTGCAAAAATACCAGC+AGG | + | 51771:11372-11391 | None:intergenic | 45.0% |
| ! | ATTGAGGGGGCTTTATCCTT+TGG | + | 51771:12647-12666 | None:intergenic | 45.0% |
| ! | CACAGTTGACTTCAGATGGT+GGG | - | 51771:12307-12326 | MS.gene23142:intron | 45.0% |
| ! | GAGCAGGTGAATTTGAAGTC+AGG | - | 51771:12834-12853 | MS.gene23142:CDS | 45.0% |
| ! | GGTTGTTGCTTGAAGGAATG+AGG | + | 51771:9761-9780 | None:intergenic | 45.0% |
| ! | TCGACTTCGGTTCCTTTTCA+AGG | - | 51771:11114-11133 | MS.gene23142:intron | 45.0% |
| ! | TTGAGGGGGCTTTATCCTTT+GGG | + | 51771:12646-12665 | None:intergenic | 45.0% |
| !! | ACTTCGGTTCCTTTTCAAGG+AGG | - | 51771:11117-11136 | MS.gene23142:intron | 45.0% |
| !! | TGGGTTGGTGAAGCAATAAC+AGG | + | 51771:9782-9801 | None:intergenic | 45.0% |
| !!! | ATTCATTTATTTTTAAATTA+TGG | - | 51771:11013-11032 | MS.gene23142:intron | 5.0% |
| !!! | ATTTTAAGAAAATAAAAATT+TGG | + | 51771:12223-12242 | None:intergenic | 5.0% |
| !!! | TTTTAAGAAAATAAAAATTT+GGG | + | 51771:12222-12241 | None:intergenic | 5.0% |
| AATAGCCGACCCTACTCAGT+GGG | - | 51771:11278-11297 | MS.gene23142:intron | 50.0% | |
| ACACAAGATGCTGTACTGCC+TGG | + | 51771:10852-10871 | None:intergenic | 50.0% | |
| ACCTCAATGGCCATCAAAGG+TGG | + | 51771:9866-9885 | None:intergenic | 50.0% | |
| AGGTCCCAAGCTCGGATATA+AGG | - | 51771:11183-11202 | MS.gene23142:intron | 50.0% | |
| CAGACATGCACTTGGTCCAT+TGG | - | 51771:12614-12633 | MS.gene23142:CDS | 50.0% | |
| CTTGTTCGCAACAGCATAGG+AGG | - | 51771:10302-10321 | MS.gene23142:intron | 50.0% | |
| GATAAAGCCCCCTCAATGTC+TGG | - | 51771:12650-12669 | MS.gene23142:CDS | 50.0% | |
| GCACTTGTTCGCAACAGCAT+AGG | - | 51771:10299-10318 | MS.gene23142:intron | 50.0% | |
| GCCGAAATCTAACACAAGGG+TGG | + | 51771:12030-12049 | None:intergenic | 50.0% | |
| GGTGGAACCTCACATCATCA+AGG | + | 51771:12012-12031 | None:intergenic | 50.0% | |
| GTACAGCATCTTGTGTTCCC+TGG | - | 51771:10856-10875 | MS.gene23142:intron | 50.0% | |
| TAATAGCCGACCCTACTCAG+TGG | - | 51771:11277-11296 | MS.gene23142:intron | 50.0% | |
| TGTCAGCTGCGGTATTGTGT+AGG | - | 51771:10119-10138 | MS.gene23142:CDS | 50.0% | |
| ! | CCACAGTTGACTTCAGATGG+TGG | - | 51771:12306-12325 | MS.gene23142:intron | 50.0% |
| ! | CCACCATCTGAAGTCAACTG+TGG | + | 51771:12309-12328 | None:intergenic | 50.0% |
| !! | GGGCTTTATCCTTTGGGATC+CGG | + | 51771:12640-12659 | None:intergenic | 50.0% |
| !! | TATTGGGTTGGTGTCAGCTG+CGG | - | 51771:10108-10127 | MS.gene23142:CDS | 50.0% |
| AATGTGAGCGACACGCTTCC+AGG | - | 51771:10831-10850 | MS.gene23142:intron | 55.0% | |
| AGAAAAGCCTGCCAGCACTC+AGG | + | 51771:10622-10641 | None:intergenic | 55.0% | |
| CATGCACTTGGTCCATTGGC+CGG | - | 51771:12618-12637 | MS.gene23142:CDS | 55.0% | |
| CATGTCGGTGCAATGGTCGT+TGG | - | 51771:10157-10176 | MS.gene23142:intron | 55.0% | |
| GCGGAGCTATCATCTCTTGC+AGG | + | 51771:10764-10783 | None:intergenic | 55.0% | |
| TGCATAGCAGGTCCCAAGCT+CGG | - | 51771:11175-11194 | MS.gene23142:intron | 55.0% | |
| TGGGACCTGCTATGCATAGC+AGG | + | 51771:11171-11190 | None:intergenic | 55.0% | |
| TTAGGGTCGGCTGTTCTCCA+GGG | + | 51771:10876-10895 | None:intergenic | 55.0% | |
| TTTCGAGCTCTTACCCGAGC+AGG | - | 51771:12818-12837 | MS.gene23142:intron | 55.0% | |
| ! | GCCACCTTTGATGGCCATTG+AGG | - | 51771:9862-9881 | MS.gene23142:intron | 55.0% |
| !! | AATGTTGCCTGAGTGCTGGC+AGG | - | 51771:10612-10631 | MS.gene23142:intron | 55.0% |
| !! | ATCATGGGTGTCGCTCTCTC+TGG | - | 51771:12740-12759 | MS.gene23142:intron | 55.0% |
| !! | ATCCTTTGGGATCCGGCCAA+TGG | + | 51771:12633-12652 | None:intergenic | 55.0% |
| CTTAGGGTCGGCTGTTCTCC+AGG | + | 51771:10877-10896 | None:intergenic | 60.0% | |
| GTCCATTGGCCGGATCCCAA+AGG | - | 51771:12628-12647 | MS.gene23142:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51771 | gene | 9568 | 12862 | 9568 | ID=MS.gene23142 |
| 51771 | mRNA | 9568 | 12862 | 9568 | ID=MS.gene23142.t1;Parent=MS.gene23142 |
| 51771 | exon | 12828 | 12862 | 12828 | ID=MS.gene23142.t1.exon1;Parent=MS.gene23142.t1 |
| 51771 | CDS | 12828 | 12862 | 12828 | ID=cds.MS.gene23142.t1;Parent=MS.gene23142.t1 |
| 51771 | exon | 12547 | 12745 | 12547 | ID=MS.gene23142.t1.exon2;Parent=MS.gene23142.t1 |
| 51771 | CDS | 12547 | 12745 | 12547 | ID=cds.MS.gene23142.t1;Parent=MS.gene23142.t1 |
| 51771 | exon | 12379 | 12468 | 12379 | ID=MS.gene23142.t1.exon3;Parent=MS.gene23142.t1 |
| 51771 | CDS | 12379 | 12468 | 12379 | ID=cds.MS.gene23142.t1;Parent=MS.gene23142.t1 |
| 51771 | exon | 11475 | 11722 | 11475 | ID=MS.gene23142.t1.exon4;Parent=MS.gene23142.t1 |
| 51771 | CDS | 11475 | 11722 | 11475 | ID=cds.MS.gene23142.t1;Parent=MS.gene23142.t1 |
| 51771 | exon | 10314 | 10523 | 10314 | ID=MS.gene23142.t1.exon5;Parent=MS.gene23142.t1 |
| 51771 | CDS | 10314 | 10523 | 10314 | ID=cds.MS.gene23142.t1;Parent=MS.gene23142.t1 |
| 51771 | exon | 9954 | 10161 | 9954 | ID=MS.gene23142.t1.exon6;Parent=MS.gene23142.t1 |
| 51771 | CDS | 9954 | 10161 | 9954 | ID=cds.MS.gene23142.t1;Parent=MS.gene23142.t1 |
| 51771 | exon | 9568 | 9813 | 9568 | ID=MS.gene23142.t1.exon7;Parent=MS.gene23142.t1 |
| 51771 | CDS | 9568 | 9813 | 9568 | ID=cds.MS.gene23142.t1;Parent=MS.gene23142.t1 |
| Gene Sequence |
| Protein sequence |
