Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21470.t1 | XP_003611473.1 | 100 | 437 | 0 | 0 | 1 | 437 | 1 | 437 | 1.10E-249 | 872.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21470.t1 | O23140 | 94.3 | 437 | 25 | 0 | 1 | 437 | 1 | 437 | 3.1e-240 | 832.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21470.t1 | G7JZX7 | 100.0 | 437 | 0 | 0 | 1 | 437 | 1 | 437 | 8.2e-250 | 872.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene21470 | 0.818919 | 1.52E-52 | -1.69E-46 |
| MS.gene04918 | MS.gene21470 | 0.810966 | 8.86E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene21470 | 0.833088 | 6.52E-56 | -1.69E-46 |
| MS.gene049807 | MS.gene21470 | 0.823548 | 1.31E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene21470 | 0.809798 | 1.58E-50 | -1.69E-46 |
| MS.gene050562 | MS.gene21470 | 0.801357 | 9.35E-49 | -1.69E-46 |
| MS.gene051121 | MS.gene21470 | 0.801561 | 8.50E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene21470 | 0.814416 | 1.56E-51 | -1.69E-46 |
| MS.gene051852 | MS.gene21470 | 0.813682 | 2.26E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene21470 | 0.830153 | 3.45E-55 | -1.69E-46 |
| MS.gene052463 | MS.gene21470 | 0.827162 | 1.82E-54 | -1.69E-46 |
| MS.gene052533 | MS.gene21470 | 0.845086 | 5.06E-59 | -1.69E-46 |
| MS.gene052609 | MS.gene21470 | 0.810044 | 1.40E-50 | -1.69E-46 |
| MS.gene05454 | MS.gene21470 | 0.822167 | 2.74E-53 | -1.69E-46 |
| MS.gene054892 | MS.gene21470 | 0.814871 | 1.24E-51 | -1.69E-46 |
| MS.gene054893 | MS.gene21470 | 0.817463 | 3.25E-52 | -1.69E-46 |
| MS.gene055386 | MS.gene21470 | 0.841147 | 5.67E-58 | -1.69E-46 |
| MS.gene055513 | MS.gene21470 | 0.824104 | 9.67E-54 | -1.69E-46 |
| MS.gene055864 | MS.gene21470 | 0.82983 | 4.13E-55 | -1.69E-46 |
| MS.gene056174 | MS.gene21470 | 0.824976 | 6.03E-54 | -1.69E-46 |
| MS.gene056507 | MS.gene21470 | 0.800712 | 1.27E-48 | -1.69E-46 |
| MS.gene056677 | MS.gene21470 | 0.807545 | 4.80E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene21470 | 0.839739 | 1.32E-57 | -1.69E-46 |
| MS.gene05686 | MS.gene21470 | 0.835622 | 1.51E-56 | -1.69E-46 |
| MS.gene057034 | MS.gene21470 | 0.802044 | 6.76E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene21470 | 0.841293 | 5.19E-58 | -1.69E-46 |
| MS.gene058095 | MS.gene21470 | 0.860314 | 2.25E-63 | -1.69E-46 |
| MS.gene058289 | MS.gene21470 | 0.829041 | 6.42E-55 | -1.69E-46 |
| MS.gene058668 | MS.gene21470 | 0.802183 | 6.33E-49 | -1.69E-46 |
| MS.gene05897 | MS.gene21470 | 0.80055 | 1.37E-48 | -1.69E-46 |
| MS.gene059170 | MS.gene21470 | 0.81017 | 1.32E-50 | -1.69E-46 |
| MS.gene059634 | MS.gene21470 | 0.801105 | 1.05E-48 | -1.69E-46 |
| MS.gene059774 | MS.gene21470 | 0.81382 | 2.11E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene21470 | -0.831859 | 1.31E-55 | -1.69E-46 |
| MS.gene060697 | MS.gene21470 | 0.811428 | 7.04E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene21470 | 0.807477 | 4.96E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene21470 | 0.816828 | 4.52E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene21470 | 0.844379 | 7.84E-59 | -1.69E-46 |
| MS.gene061188 | MS.gene21470 | 0.823214 | 1.56E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21470 | MS.gene010105 | PPI |
| MS.gene050001 | MS.gene21470 | PPI |
| MS.gene050768 | MS.gene21470 | PPI |
| MS.gene050771 | MS.gene21470 | PPI |
| MS.gene21470 | MS.gene054375 | PPI |
| MS.gene29199 | MS.gene21470 | PPI |
| MS.gene86178 | MS.gene21470 | PPI |
| MS.gene23142 | MS.gene21470 | PPI |
| MS.gene068109 | MS.gene21470 | PPI |
| MS.gene067937 | MS.gene21470 | PPI |
| MS.gene21470 | MS.gene056431 | PPI |
| MS.gene027687 | MS.gene21470 | PPI |
| MS.gene44324 | MS.gene21470 | PPI |
| MS.gene072572 | MS.gene21470 | PPI |
| MS.gene21470 | MS.gene008864 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21470.t1 | MTR_5g014330 | 100.000 | 437 | 0 | 0 | 1 | 437 | 1 | 437 | 0.0 | 899 |
| MS.gene21470.t1 | MTR_5g014330 | 100.000 | 398 | 0 | 0 | 1 | 398 | 1 | 398 | 0.0 | 818 |
| MS.gene21470.t1 | MTR_8g069565 | 43.891 | 442 | 231 | 7 | 1 | 439 | 1 | 428 | 1.25e-122 | 369 |
| MS.gene21470.t1 | MTR_5g033500 | 43.213 | 442 | 234 | 6 | 1 | 439 | 1 | 428 | 1.77e-122 | 368 |
| MS.gene21470.t1 | MTR_5g033500 | 42.724 | 323 | 169 | 5 | 1 | 321 | 1 | 309 | 1.49e-83 | 266 |
| MS.gene21470.t1 | MTR_5g014320 | 85.987 | 157 | 19 | 3 | 436 | 590 | 4 | 159 | 4.13e-78 | 244 |
| MS.gene21470.t1 | MTR_3g112190 | 32.301 | 452 | 273 | 9 | 6 | 437 | 3 | 441 | 1.58e-75 | 247 |
| MS.gene21470.t1 | MTR_5g066050 | 33.042 | 457 | 272 | 10 | 6 | 437 | 3 | 450 | 2.58e-72 | 239 |
| MS.gene21470.t1 | MTR_5g066050 | 32.969 | 458 | 270 | 12 | 6 | 437 | 3 | 449 | 1.11e-71 | 237 |
| MS.gene21470.t1 | MTR_7g111870 | 29.315 | 365 | 220 | 11 | 81 | 437 | 76 | 410 | 1.03e-42 | 158 |
| MS.gene21470.t1 | MTR_7g111870 | 31.395 | 258 | 145 | 7 | 81 | 330 | 76 | 309 | 4.71e-35 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21470.t1 | AT5G46630 | 94.279 | 437 | 25 | 0 | 1 | 437 | 1 | 437 | 0.0 | 855 |
| MS.gene21470.t1 | AT5G46630 | 93.947 | 413 | 25 | 0 | 1 | 413 | 1 | 413 | 0.0 | 805 |
| MS.gene21470.t1 | AT1G60780 | 42.534 | 442 | 237 | 7 | 1 | 439 | 1 | 428 | 3.64e-120 | 362 |
| MS.gene21470.t1 | AT1G10730 | 42.500 | 440 | 236 | 7 | 1 | 437 | 1 | 426 | 4.14e-117 | 355 |
| MS.gene21470.t1 | AT4G24550 | 33.113 | 453 | 276 | 8 | 6 | 437 | 4 | 450 | 2.76e-80 | 260 |
| MS.gene21470.t1 | AT4G24550 | 32.474 | 388 | 236 | 7 | 6 | 373 | 4 | 385 | 1.42e-63 | 214 |
| MS.gene21470.t1 | AT4G24550 | 32.626 | 377 | 228 | 7 | 6 | 362 | 4 | 374 | 4.14e-63 | 213 |
| MS.gene21470.t1 | AT1G56590 | 28.255 | 361 | 229 | 8 | 81 | 437 | 80 | 414 | 6.45e-39 | 148 |
| MS.gene21470.t1 | AT4G17960 | 39.157 | 166 | 75 | 4 | 436 | 590 | 4 | 154 | 5.69e-27 | 107 |
| MS.gene21470.t1 | AT5G46620 | 40.299 | 134 | 67 | 6 | 452 | 583 | 27 | 149 | 4.69e-18 | 81.6 |
Find 127 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACTATTCAAATCATATTT+TGG | 0.157391 | 5.3:-7493012 | MS.gene21470:CDS |
| ACCGATTCAGATGGAGTTTC+AGG | 0.260698 | 5.3:-7487133 | MS.gene21470:intron |
| CTTATGAAGTGCTTTCTATC+TGG | 0.279752 | 5.3:-7490218 | MS.gene21470:CDS |
| GTAACTTGCAACGTCGCATT+TGG | 0.288584 | 5.3:+7490526 | None:intergenic |
| CTCCTTTGATGGCGGTGTTC+AGG | 0.291384 | 5.3:-7484163 | MS.gene21470:intron |
| TTAAATCACGCCCTACTAAA+AGG | 0.294099 | 5.3:-7490136 | MS.gene21470:intron |
| GTTGCTTTACAGGGGAAATA+TGG | 0.297064 | 5.3:-7493444 | MS.gene21470:intron |
| AAACCAACCTTGGATGAAAA+AGG | 0.306447 | 5.3:+7490928 | None:intergenic |
| TGTTCGACCAAGTTCCTTGA+TGG | 0.315007 | 5.3:+7487754 | None:intergenic |
| CAGCTATTGATTGTTTAGTT+TGG | 0.318085 | 5.3:-7487499 | MS.gene21470:CDS |
| TTTCAGGTAAAGAGTGTCTT+TGG | 0.322597 | 5.3:-7487623 | MS.gene21470:intron |
| TCGTCAAATTTACACATTGA+TGG | 0.324003 | 5.3:+7489836 | None:intergenic |
| GTCGGAGTTGTTGTTATCAT+TGG | 0.336639 | 5.3:+7484338 | None:intergenic |
| GAACTTTCCCTTCTGGTGAT+AGG | 0.336885 | 5.3:+7481204 | None:intergenic |
| ACCTGTTTCTTCACTTTGAC+TGG | 0.350762 | 5.3:+7481227 | None:intergenic |
| GGTGGTATGCAAAGCATCTT+AGG | 0.354326 | 5.3:-7481340 | MS.gene21470:CDS |
| GCTCCTTCTACCTCCTTTGA+TGG | 0.359538 | 5.3:-7484174 | MS.gene21470:CDS |
| GTCTCTATCGCGACGATGTC+GGG | 0.365747 | 5.3:-7494572 | MS.gene21470:intron |
| AAATGCGACGTTGCAAGTTA+CGG | 0.367377 | 5.3:-7490524 | MS.gene21470:CDS |
| GTTCCCATGTTCACAGCATC+TGG | 0.373702 | 5.3:-7486666 | MS.gene21470:CDS |
| ATATTCAGTGTAAACCTTGC+AGG | 0.392252 | 5.3:+7481260 | None:intergenic |
| GGAACACCGGGGAAGGTTGC+AGG | 0.395655 | 5.3:-7481171 | MS.gene21470:CDS |
| ATCAGTTCAAATTCACCATC+TGG | 0.398480 | 5.3:+7489778 | None:intergenic |
| CTCATTTACGAGCTTCTAGA+TGG | 0.399037 | 5.3:-7492949 | MS.gene21470:intron |
| CACTGCAGAACTTTCCCTTC+TGG | 0.400150 | 5.3:+7481197 | None:intergenic |
| TTCAAACCCAACTTCAAATC+AGG | 0.404289 | 5.3:+7490191 | None:intergenic |
| AATGCGACGTTGCAAGTTAC+GGG | 0.424532 | 5.3:-7490523 | MS.gene21470:CDS |
| TGCAGGATAAGAAAATTTCC+TGG | 0.425356 | 5.3:-7487231 | MS.gene21470:intron |
| GATGGTTGGCAATACTTTGA+AGG | 0.426750 | 5.3:+7487772 | None:intergenic |
| GAGGTAGAAGGAGCGAGAAC+AGG | 0.426751 | 5.3:+7484183 | None:intergenic |
| TCAATTTCTGCGCTCAAAGT+TGG | 0.427617 | 5.3:+7487198 | None:intergenic |
| AGGCTTTAGCGTTAAGGCTC+AGG | 0.431721 | 5.3:-7484238 | MS.gene21470:CDS |
| CGTCACGCCGCCGCCGGTGC+CGG | 0.436572 | 5.3:-7484312 | MS.gene21470:CDS |
| TCGTAGAGGCTTTAGCGTTA+AGG | 0.438853 | 5.3:-7484244 | MS.gene21470:CDS |
| TGCAACGTCGCATTTGGAAC+AGG | 0.439125 | 5.3:+7490532 | None:intergenic |
| TTGGGTTTGAATGATAAGAT+TGG | 0.441817 | 5.3:-7490179 | MS.gene21470:CDS |
| GGAATGCCTGATTTGAAGTT+GGG | 0.447084 | 5.3:-7490197 | MS.gene21470:CDS |
| TCTTTGACTCGAAAATTAGT+TGG | 0.447794 | 5.3:+7484279 | None:intergenic |
| TTTGCAGAAATCATGGACTT+TGG | 0.450042 | 5.3:-7491015 | MS.gene21470:intron |
| TCACACTCTCCACAATATCT+AGG | 0.454091 | 5.3:+7490371 | None:intergenic |
| GACGATCGTCACGCCGCCGC+CGG | 0.456351 | 5.3:-7484318 | MS.gene21470:CDS |
| AAGCTTTATATTACTCAAGA+AGG | 0.456687 | 5.3:-7490961 | MS.gene21470:CDS |
| CGCTTTCAAGTTCGTTGTAG+AGG | 0.457965 | 5.3:-7493276 | MS.gene21470:intron |
| AAGCAGGATCATACGAGATT+AGG | 0.459777 | 5.3:-7486482 | MS.gene21470:intron |
| ATGTTGACCGGCACCGGCGG+CGG | 0.460835 | 5.3:+7484305 | None:intergenic |
| TTTGCTGTTTGTTTCGGCAC+AGG | 0.461516 | 5.3:+7487563 | None:intergenic |
| GCCAGTCAAAGTGAAGAAAC+AGG | 0.465840 | 5.3:-7481228 | MS.gene21470:CDS |
| CTGAAGGTGTGGGAAAAGAG+TGG | 0.468687 | 5.3:-7486540 | MS.gene21470:intron |
| CGATGACTGAAAAGAAATCA+TGG | 0.469490 | 5.3:-7487164 | MS.gene21470:CDS |
| CGTCTCTATCGCGACGATGT+CGG | 0.469885 | 5.3:-7494573 | MS.gene21470:CDS |
| ACCTGAAACTCCATCTGAAT+CGG | 0.470886 | 5.3:+7487132 | None:intergenic |
| ACATGTATTTGCAGAAATCA+TGG | 0.472173 | 5.3:-7491022 | MS.gene21470:intron |
| CCGCCATCAAAGGAGGTAGA+AGG | 0.479244 | 5.3:+7484171 | None:intergenic |
| TGGAATGCCTGATTTGAAGT+TGG | 0.486730 | 5.3:-7490198 | MS.gene21470:CDS |
| ACGGATGGAAGTAAATGTTA+AGG | 0.488849 | 5.3:-7487732 | MS.gene21470:intron |
| CATCCACCAATCTGCTTCAC+AGG | 0.489532 | 5.3:+7493371 | None:intergenic |
| AATCTTCTTATGTCGTCAAA+AGG | 0.490176 | 5.3:-7490349 | MS.gene21470:intron |
| TGGGTACAACACTGTTGAAT+GGG | 0.491741 | 5.3:-7486520 | MS.gene21470:CDS |
| CATCGTCTTTAGAAAACCCT+AGG | 0.493053 | 5.3:+7484382 | None:intergenic |
| TTCTGCAGTGTGTGGAACAC+CGG | 0.494300 | 5.3:-7481184 | MS.gene21470:CDS |
| GCTGTTGGTTGGCGGAGAGA+AGG | 0.495289 | 5.3:-7490499 | MS.gene21470:CDS |
| CGACCAAGTTCCTTGATGGT+TGG | 0.502376 | 5.3:+7487758 | None:intergenic |
| GTGGGTACAACACTGTTGAA+TGG | 0.504729 | 5.3:-7486521 | MS.gene21470:CDS |
| ATATAAAGCTTTAAGATCTC+CGG | 0.510605 | 5.3:+7490973 | None:intergenic |
| TAAACCAGATGCTGTGAACA+TGG | 0.514088 | 5.3:+7486662 | None:intergenic |
| ATACAACCTGCAACCTTCCC+CGG | 0.515295 | 5.3:+7481165 | None:intergenic |
| TTGCCAACCATCAAGGAACT+TGG | 0.515329 | 5.3:-7487761 | MS.gene21470:CDS |
| TCTGCAGTGTGTGGAACACC+GGG | 0.516648 | 5.3:-7481183 | MS.gene21470:CDS |
| ACCAATCTGCTTCACAGGAC+AGG | 0.518339 | 5.3:+7493376 | None:intergenic |
| GTTCTGCGCTGTGATGTAAC+GGG | 0.519953 | 5.3:-7490248 | MS.gene21470:CDS |
| TTACGGGTGCTGTTGGTTGG+CGG | 0.523294 | 5.3:-7490507 | MS.gene21470:CDS |
| CAAAGTATTGCCAACCATCA+AGG | 0.525550 | 5.3:-7487768 | MS.gene21470:CDS |
| ATTAGTTGGACGATGTTGAC+CGG | 0.527912 | 5.3:+7484293 | None:intergenic |
| GTGCAAAGATGTTTGCACTA+GGG | 0.528491 | 5.3:-7487601 | MS.gene21470:CDS |
| AAGTTACGGGTGCTGTTGGT+TGG | 0.531316 | 5.3:-7490510 | MS.gene21470:CDS |
| TGTTCTGCGCTGTGATGTAA+CGG | 0.532251 | 5.3:-7490249 | MS.gene21470:CDS |
| GCAGGATAAGAAAATTTCCT+GGG | 0.532433 | 5.3:-7487230 | MS.gene21470:intron |
| ATGGTTGGCAATACTTTGAA+GGG | 0.536477 | 5.3:+7487773 | None:intergenic |
| ACCTGTCCTGTGAAGCAGAT+TGG | 0.537523 | 5.3:-7493377 | MS.gene21470:CDS |
| TGGACGATGTTGACCGGCAC+CGG | 0.538377 | 5.3:+7484299 | None:intergenic |
| GACCTGAACACCGCCATCAA+AGG | 0.542304 | 5.3:+7484161 | None:intergenic |
| CATCTTAGGATAGATGAAGA+TGG | 0.544424 | 5.3:-7481326 | MS.gene21470:CDS |
| ACAGGTGTTCCTAGATATTG+TGG | 0.545898 | 5.3:-7490380 | MS.gene21470:intron |
| GGTGCAAAGATGTTTGCACT+AGG | 0.547993 | 5.3:-7487602 | MS.gene21470:CDS |
| AAAGTTGGCTCAGTTTGCCC+AGG | 0.550589 | 5.3:+7487213 | None:intergenic |
| ACGAGTTTCACAGTCACATC+CGG | 0.553418 | 5.3:-7487539 | MS.gene21470:CDS |
| ATAATGCAAACGAAAGAACT+TGG | 0.553697 | 5.3:-7493401 | MS.gene21470:CDS |
| TACTTCACCAGGGTCTGGGG+TGG | 0.554579 | 5.3:-7481358 | MS.gene21470:intron |
| TGCAAAGATGTTTGCACTAG+GGG | 0.556537 | 5.3:-7487600 | MS.gene21470:CDS |
| GATCGTCCTCAACAACAACT+TGG | 0.559775 | 5.3:-7484207 | MS.gene21470:CDS |
| ATCAGGTATCGTATCACTGA+GGG | 0.564329 | 5.3:-7487806 | MS.gene21470:intron |
| TAAGTTGTGACTCTTTCTCA+AGG | 0.567568 | 5.3:+7490156 | None:intergenic |
| TTATCCACAAAATCTTTCAC+CGG | 0.572212 | 5.3:-7490992 | MS.gene21470:CDS |
| AGCGCAAGCTACATTAGCAT+TGG | 0.574062 | 5.3:+7493295 | None:intergenic |
| TAAACAGCGGAAGCAGCCAC+CGG | 0.577176 | 5.3:+7494630 | None:intergenic |
| TTGCAAGTTACGGGTGCTGT+TGG | 0.580431 | 5.3:-7490514 | MS.gene21470:CDS |
| TTTCTTCAGAGATGCCTGCA+AGG | 0.586280 | 5.3:-7481274 | MS.gene21470:CDS |
| GACTAGACCACCGATTCAGA+TGG | 0.586855 | 5.3:-7487142 | MS.gene21470:CDS |
| GTTCGCTACATCACAAAAGC+AGG | 0.590440 | 5.3:-7486498 | MS.gene21470:CDS |
| TGTCCTGTGAAGCAGATTGG+TGG | 0.590779 | 5.3:-7493374 | MS.gene21470:CDS |
| GGCGGCGGCGTGACGATCGT+CGG | 0.591766 | 5.3:+7484320 | None:intergenic |
| GGAACTTGGTCGAACACGGA+TGG | 0.592221 | 5.3:-7487747 | MS.gene21470:CDS |
| TGAAGGTGTGGGAAAAGAGT+GGG | 0.594343 | 5.3:-7486539 | MS.gene21470:intron |
| AGGGAAAGTTCTGCAGTGTG+TGG | 0.608736 | 5.3:-7481192 | MS.gene21470:CDS |
| TCAAGGAACTTGGTCGAACA+CGG | 0.609772 | 5.3:-7487751 | MS.gene21470:CDS |
| CCTTCTACCTCCTTTGATGG+CGG | 0.611146 | 5.3:-7484171 | MS.gene21470:CDS |
| AAACAGGTCCTATCACCAGA+AGG | 0.614825 | 5.3:-7481212 | MS.gene21470:CDS |
| AAATTTGACGAGGTTCAACT+CGG | 0.616156 | 5.3:-7489824 | MS.gene21470:CDS |
| TGAAACTCCATCTGAATCGG+TGG | 0.627007 | 5.3:+7487135 | None:intergenic |
| TTACACTGAATATTGACACT+AGG | 0.628865 | 5.3:-7481250 | MS.gene21470:CDS |
| CTGAACACCGCCATCAAAGG+AGG | 0.629187 | 5.3:+7484164 | None:intergenic |
| GTTTACTTCTTGAACCTCCG+TGG | 0.631442 | 5.3:-7494612 | MS.gene21470:CDS |
| AACAGGTCCTATCACCAGAA+GGG | 0.634454 | 5.3:-7481211 | MS.gene21470:CDS |
| ACGATGTTGACCGGCACCGG+CGG | 0.636678 | 5.3:+7484302 | None:intergenic |
| AGTGTGTGGAACACCGGGGA+AGG | 0.648548 | 5.3:-7481178 | MS.gene21470:CDS |
| ATCAATGTGTAAATTTGACG+AGG | 0.649503 | 5.3:-7489834 | MS.gene21470:CDS |
| ACAGGACCAAGTTGTTGTTG+AGG | 0.649919 | 5.3:+7484201 | None:intergenic |
| CACTGGATCGGAGATGCCGG+TGG | 0.655709 | 5.3:-7494646 | None:intergenic |
| AAACCAGATGCTGTGAACAT+GGG | 0.662215 | 5.3:+7486663 | None:intergenic |
| GATTGATGAGAACGTCACCA+CGG | 0.673884 | 5.3:+7494595 | None:intergenic |
| GAAACTGGTCAATCTCGTAG+AGG | 0.681227 | 5.3:-7484258 | MS.gene21470:CDS |
| AGTTCAAATTCACCATCTGG+AGG | 0.689739 | 5.3:+7489781 | None:intergenic |
| TTCTGCGCTGTGATGTAACG+GGG | 0.698309 | 5.3:-7490247 | MS.gene21470:CDS |
| TATCAGGTATCGTATCACTG+AGG | 0.719317 | 5.3:-7487807 | MS.gene21470:intron |
| TGATGAGAACGTCACCACGG+AGG | 0.731384 | 5.3:+7494598 | None:intergenic |
| GAGGTTCAAGAAGTAAACAG+CGG | 0.750495 | 5.3:+7494617 | None:intergenic |
| CTGCAGTGTGTGGAACACCG+GGG | 0.793352 | 5.3:-7481182 | MS.gene21470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 7481163 | 7494655 | 7481163 | ID=MS.gene21470 |
| chr5.3 | mRNA | 7481163 | 7494655 | 7481163 | ID=MS.gene21470.t1;Parent=MS.gene21470 |
| chr5.3 | exon | 7494573 | 7494655 | 7494573 | ID=MS.gene21470.t1.exon1;Parent=MS.gene21470.t1 |
| chr5.3 | CDS | 7494573 | 7494655 | 7494573 | ID=cds.MS.gene21470.t1;Parent=MS.gene21470.t1 |
| chr5.3 | exon | 7493277 | 7493454 | 7493277 | ID=MS.gene21470.t1.exon2;Parent=MS.gene21470.t1 |
| chr5.3 | CDS | 7493277 | 7493454 | 7493277 | ID=cds.MS.gene21470.t1;Parent=MS.gene21470.t1 |
| chr5.3 | exon | 7492950 | 7493040 | 7492950 | ID=MS.gene21470.t1.exon3;Parent=MS.gene21470.t1 |
| chr5.3 | CDS | 7492950 | 7493040 | 7492950 | ID=cds.MS.gene21470.t1;Parent=MS.gene21470.t1 |
| chr5.3 | exon | 7490936 | 7491030 | 7490936 | ID=MS.gene21470.t1.exon4;Parent=MS.gene21470.t1 |
| chr5.3 | CDS | 7490936 | 7491030 | 7490936 | ID=cds.MS.gene21470.t1;Parent=MS.gene21470.t1 |
| chr5.3 | exon | 7490477 | 7490566 | 7490477 | ID=MS.gene21470.t1.exon5;Parent=MS.gene21470.t1 |
| chr5.3 | CDS | 7490477 | 7490566 | 7490477 | ID=cds.MS.gene21470.t1;Parent=MS.gene21470.t1 |
| chr5.3 | exon | 7490350 | 7490398 | 7490350 | ID=MS.gene21470.t1.exon6;Parent=MS.gene21470.t1 |
| chr5.3 | CDS | 7490350 | 7490398 | 7490350 | ID=cds.MS.gene21470.t1;Parent=MS.gene21470.t1 |
| chr5.3 | exon | 7490137 | 7490275 | 7490137 | ID=MS.gene21470.t1.exon7;Parent=MS.gene21470.t1 |
| chr5.3 | CDS | 7490137 | 7490275 | 7490137 | ID=cds.MS.gene21470.t1;Parent=MS.gene21470.t1 |
| chr5.3 | exon | 7489775 | 7489891 | 7489775 | ID=MS.gene21470.t1.exon8;Parent=MS.gene21470.t1 |
| chr5.3 | CDS | 7489775 | 7489891 | 7489775 | ID=cds.MS.gene21470.t1;Parent=MS.gene21470.t1 |
| chr5.3 | exon | 7487733 | 7487823 | 7487733 | ID=MS.gene21470.t1.exon9;Parent=MS.gene21470.t1 |
| chr5.3 | CDS | 7487733 | 7487823 | 7487733 | ID=cds.MS.gene21470.t1;Parent=MS.gene21470.t1 |
| chr5.3 | exon | 7487497 | 7487639 | 7487497 | ID=MS.gene21470.t1.exon10;Parent=MS.gene21470.t1 |
| chr5.3 | CDS | 7487497 | 7487639 | 7487497 | ID=cds.MS.gene21470.t1;Parent=MS.gene21470.t1 |
| chr5.3 | exon | 7487134 | 7487248 | 7487134 | ID=MS.gene21470.t1.exon11;Parent=MS.gene21470.t1 |
| chr5.3 | CDS | 7487134 | 7487248 | 7487134 | ID=cds.MS.gene21470.t1;Parent=MS.gene21470.t1 |
| chr5.3 | exon | 7486644 | 7486688 | 7486644 | ID=MS.gene21470.t1.exon12;Parent=MS.gene21470.t1 |
| chr5.3 | CDS | 7486644 | 7486688 | 7486644 | ID=cds.MS.gene21470.t1;Parent=MS.gene21470.t1 |
| chr5.3 | exon | 7486483 | 7486556 | 7486483 | ID=MS.gene21470.t1.exon13;Parent=MS.gene21470.t1 |
| chr5.3 | CDS | 7486483 | 7486556 | 7486483 | ID=cds.MS.gene21470.t1;Parent=MS.gene21470.t1 |
| chr5.3 | exon | 7484164 | 7484419 | 7484164 | ID=MS.gene21470.t1.exon14;Parent=MS.gene21470.t1 |
| chr5.3 | CDS | 7484164 | 7484419 | 7484164 | ID=cds.MS.gene21470.t1;Parent=MS.gene21470.t1 |
| chr5.3 | exon | 7481163 | 7481369 | 7481163 | ID=MS.gene21470.t1.exon15;Parent=MS.gene21470.t1 |
| chr5.3 | CDS | 7481163 | 7481369 | 7481163 | ID=cds.MS.gene21470.t1;Parent=MS.gene21470.t1 |
| Gene Sequence |
| Protein sequence |
