Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86178.t1 | XP_003613166.1 | 100 | 428 | 0 | 0 | 1 | 428 | 1 | 428 | 6.20E-221 | 776.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86178.t1 | O22715 | 83.4 | 428 | 71 | 0 | 1 | 428 | 1 | 428 | 1.8e-208 | 726.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86178.t1 | G7K043 | 100.0 | 428 | 0 | 0 | 1 | 428 | 1 | 428 | 4.4e-221 | 776.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86178 | MS.gene010105 | PPI |
| MS.gene86178 | MS.gene050768 | PPI |
| MS.gene017498 | MS.gene86178 | PPI |
| MS.gene86178 | MS.gene050771 | PPI |
| MS.gene86178 | MS.gene054375 | PPI |
| MS.gene23142 | MS.gene86178 | PPI |
| MS.gene86178 | MS.gene021005 | PPI |
| MS.gene86178 | MS.gene052309 | PPI |
| MS.gene86178 | MS.gene21470 | PPI |
| MS.gene86178 | MS.gene031829 | PPI |
| MS.gene015312 | MS.gene86178 | PPI |
| MS.gene86178 | MS.gene09656 | PPI |
| MS.gene86178 | MS.gene072572 | PPI |
| MS.gene003372 | MS.gene86178 | PPI |
| MS.gene75781 | MS.gene86178 | PPI |
| MS.gene050001 | MS.gene86178 | PPI |
| MS.gene86178 | MS.gene28922 | PPI |
| MS.gene86178 | MS.gene059672 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86178.t1 | MTR_5g033500 | 100.000 | 428 | 0 | 0 | 1 | 428 | 1 | 428 | 0.0 | 884 |
| MS.gene86178.t1 | MTR_8g069565 | 93.925 | 428 | 26 | 0 | 1 | 428 | 1 | 428 | 0.0 | 848 |
| MS.gene86178.t1 | MTR_5g033500 | 100.000 | 307 | 0 | 0 | 1 | 307 | 1 | 307 | 0.0 | 634 |
| MS.gene86178.t1 | MTR_5g014330 | 43.409 | 440 | 232 | 6 | 1 | 426 | 1 | 437 | 5.28e-125 | 369 |
| MS.gene86178.t1 | MTR_5g014330 | 41.439 | 403 | 219 | 6 | 1 | 389 | 1 | 400 | 9.68e-105 | 316 |
| MS.gene86178.t1 | MTR_3g112190 | 32.957 | 443 | 273 | 8 | 6 | 427 | 3 | 442 | 1.42e-79 | 253 |
| MS.gene86178.t1 | MTR_5g066050 | 33.040 | 454 | 267 | 10 | 6 | 427 | 3 | 451 | 1.05e-77 | 248 |
| MS.gene86178.t1 | MTR_5g066050 | 33.113 | 453 | 267 | 10 | 6 | 427 | 3 | 450 | 1.26e-77 | 248 |
| MS.gene86178.t1 | MTR_7g111870 | 25.843 | 445 | 267 | 11 | 7 | 426 | 4 | 410 | 1.80e-45 | 162 |
| MS.gene86178.t1 | MTR_7g111870 | 27.246 | 334 | 193 | 6 | 7 | 318 | 4 | 309 | 6.53e-42 | 151 |
| MS.gene86178.t1 | MTR_3g452810 | 78.788 | 66 | 13 | 1 | 49 | 113 | 19 | 84 | 2.27e-26 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86178.t1 | AT1G60780 | 89.720 | 428 | 44 | 0 | 1 | 428 | 1 | 428 | 0.0 | 825 |
| MS.gene86178.t1 | AT1G10730 | 85.280 | 428 | 63 | 0 | 1 | 428 | 1 | 428 | 0.0 | 785 |
| MS.gene86178.t1 | AT5G46630 | 43.409 | 440 | 232 | 5 | 1 | 426 | 1 | 437 | 1.22e-128 | 379 |
| MS.gene86178.t1 | AT5G46630 | 42.067 | 416 | 224 | 5 | 1 | 402 | 1 | 413 | 2.64e-115 | 345 |
| MS.gene86178.t1 | AT4G24550 | 31.429 | 455 | 272 | 8 | 6 | 427 | 4 | 451 | 1.57e-80 | 256 |
| MS.gene86178.t1 | AT4G24550 | 31.953 | 338 | 206 | 4 | 6 | 320 | 4 | 340 | 1.41e-63 | 209 |
| MS.gene86178.t1 | AT4G24550 | 31.953 | 338 | 206 | 4 | 6 | 320 | 4 | 340 | 2.10e-63 | 209 |
| MS.gene86178.t1 | AT1G56590 | 26.818 | 440 | 275 | 11 | 7 | 427 | 4 | 415 | 1.22e-44 | 160 |
Find 91 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCTTCCACCCAAATTAA+AGG | 0.175025 | 5.1:-24541616 | None:intergenic |
| TCCAGGTTAAGCCTTTAATT+TGG | 0.198567 | 5.1:+24541605 | MS.gene86178:intron |
| TATGAGCTAAGGCTTATTTA+AGG | 0.229610 | 5.1:+24543606 | MS.gene86178:CDS |
| AAAGAGTCGGATTGAAATTA+TGG | 0.266135 | 5.1:+24541654 | MS.gene86178:CDS |
| TGCTTCCTCATCTGTTATAC+TGG | 0.267401 | 5.1:-24542146 | None:intergenic |
| AAAAGCTAGGAGTCAGTTTA+AGG | 0.275911 | 5.1:+24541678 | MS.gene86178:CDS |
| CCAGGTTAAGCCTTTAATTT+GGG | 0.281873 | 5.1:+24541606 | MS.gene86178:intron |
| TGAGCTACTTGATGAAATTA+TGG | 0.307055 | 5.1:+24539560 | MS.gene86178:CDS |
| CCCATTGACGTTCGAACATT+AGG | 0.309842 | 5.1:-24541924 | None:intergenic |
| TAATTAGATCTGACGTTGTT+GGG | 0.329471 | 5.1:+24539885 | MS.gene86178:CDS |
| TATTGAGAAGAGTGGGTATC+AGG | 0.353475 | 5.1:+24543545 | MS.gene86178:CDS |
| CACCAAACTCATCGATAAAC+AGG | 0.401786 | 5.1:+24538874 | MS.gene86178:CDS |
| TTGAAGATTATTGAGAAGAG+TGG | 0.401908 | 5.1:+24543537 | MS.gene86178:CDS |
| TTAGGATTGGTTGCATCAAC+AGG | 0.412796 | 5.1:-24541906 | None:intergenic |
| CTTGATGAAATTATGGACTT+TGG | 0.414029 | 5.1:+24539567 | MS.gene86178:CDS |
| TCAAAGGCCGCATCCTCGTC+TGG | 0.420613 | 5.1:+24538804 | MS.gene86178:CDS |
| TAAGACTGATGCTTATAGAA+TGG | 0.429934 | 5.1:+24539632 | MS.gene86178:CDS |
| AAATGATAGAGTGTTATTAG+AGG | 0.432015 | 5.1:+24541185 | MS.gene86178:CDS |
| ATCTCAAATTTCACGCGTAT+AGG | 0.434573 | 5.1:-24542187 | None:intergenic |
| TCCTAATGTTCGAACGTCAA+TGG | 0.438449 | 5.1:+24541923 | MS.gene86178:CDS |
| TGGAAAATTCGATCCTTCCC+TGG | 0.461482 | 5.1:+24541984 | MS.gene86178:CDS |
| TTGGTTGCATCAACAGGAAC+AGG | 0.463558 | 5.1:-24541900 | None:intergenic |
| CCTAATGTTCGAACGTCAAT+GGG | 0.466244 | 5.1:+24541924 | MS.gene86178:CDS |
| CGTTCGATTTGATGACATAC+AGG | 0.467708 | 5.1:+24541456 | MS.gene86178:CDS |
| ATCTTTGCCTCGGTATATTG+AGG | 0.473686 | 5.1:-24539594 | None:intergenic |
| TTCGAAGATACCTTGCCTCC+AGG | 0.475747 | 5.1:-24542002 | None:intergenic |
| ACCACCGCATCATCAATGTC+AGG | 0.484386 | 5.1:+24538752 | None:intergenic |
| CAACTCAATCTCGACATTTG+TGG | 0.490408 | 5.1:-24541877 | None:intergenic |
| TAGGGATAACTTTGTTGTTG+TGG | 0.490788 | 5.1:+24539286 | MS.gene86178:CDS |
| AATTGGAAGAGGAATCACTT+AGG | 0.497804 | 5.1:+24539267 | MS.gene86178:CDS |
| GGTATGCCCGAGTGTAAACT+TGG | 0.500011 | 5.1:+24541159 | MS.gene86178:CDS |
| GAGTTTGGTGAAGAAACGTT+CGG | 0.502228 | 5.1:-24538861 | None:intergenic |
| ATTGGAAGAGGAATCACTTA+GGG | 0.503021 | 5.1:+24539268 | MS.gene86178:CDS |
| AGTTACTCAAAGACCTCCTA+TGG | 0.508336 | 5.1:+24539656 | MS.gene86178:CDS |
| ATTTCTTTCATCCCTCCTGA+TGG | 0.509512 | 5.1:+24541431 | MS.gene86178:CDS |
| AACCTGTTTATCGATGAGTT+TGG | 0.510129 | 5.1:-24538876 | None:intergenic |
| ATCAAATCGAACGATCCATC+AGG | 0.513755 | 5.1:-24541446 | None:intergenic |
| GAAGAAACGTTCGGCTTCGA+TGG | 0.521450 | 5.1:-24538852 | None:intergenic |
| ATTCCAGAAACAGTAAAATA+CGG | 0.525326 | 5.1:-24542211 | None:intergenic |
| CTCACTTAAAATCTTTGCCT+CGG | 0.525393 | 5.1:-24539604 | None:intergenic |
| GTGGGTATCAGGCTCTTCCA+TGG | 0.527442 | 5.1:+24543556 | MS.gene86178:CDS |
| TGACGTTCGAACATTAGGAT+TGG | 0.528631 | 5.1:-24541919 | None:intergenic |
| TTAATTAGATCTGACGTTGT+TGG | 0.530637 | 5.1:+24539884 | MS.gene86178:CDS |
| AATATTCTTGTCAATAGCAA+TGG | 0.531888 | 5.1:+24539857 | MS.gene86178:CDS |
| CTGTTCCTTCTCGACATCAA+AGG | 0.536221 | 5.1:+24538788 | MS.gene86178:CDS |
| TGAAGATTATTGAGAAGAGT+GGG | 0.536978 | 5.1:+24543538 | MS.gene86178:CDS |
| CAAGGGAAAAGCGATAGACT+TGG | 0.539799 | 5.1:+24541224 | MS.gene86178:CDS |
| ACACCGTTATCATATACAAC+CGG | 0.541052 | 5.1:-24539016 | None:intergenic |
| TTGAAATTATGGTAAAAGCT+AGG | 0.542366 | 5.1:+24541665 | MS.gene86178:CDS |
| TTTATGAAGGTGTGTCCGGT+TGG | 0.542485 | 5.1:+24541385 | MS.gene86178:intron |
| TGATGAACAATCTCAAGATC+CGG | 0.542836 | 5.1:+24538997 | MS.gene86178:CDS |
| GATCCGGTTGTATATGATAA+CGG | 0.551593 | 5.1:+24539013 | MS.gene86178:CDS |
| CGCGGTAGTCACGCCAGACG+AGG | 0.552252 | 5.1:-24538817 | None:intergenic |
| AATTAGATCTGACGTTGTTG+GGG | 0.553267 | 5.1:+24539886 | MS.gene86178:CDS |
| ATTTAAACCAAGTTTACACT+CGG | 0.555581 | 5.1:-24541166 | None:intergenic |
| GGTTAAGCCTTTAATTTGGG+TGG | 0.557780 | 5.1:+24541609 | MS.gene86178:intron |
| TCGAAGATACCTTGCCTCCA+GGG | 0.564558 | 5.1:-24542001 | None:intergenic |
| TCGATCCTTCCCTGGAGGCA+AGG | 0.573782 | 5.1:+24541992 | MS.gene86178:CDS |
| TTGAAAAGCACTCAAAGAGT+CGG | 0.576501 | 5.1:+24541641 | MS.gene86178:CDS |
| GACATACAGGCTCAGTACAC+AGG | 0.577294 | 5.1:+24541469 | MS.gene86178:CDS |
| CCTCATCTGTTATACTGGGA+AGG | 0.577347 | 5.1:-24542141 | None:intergenic |
| AGATACCTTGCCTCCAGGGA+AGG | 0.578555 | 5.1:-24541997 | None:intergenic |
| TGGGTATCAGGCTCTTCCAT+GGG | 0.580053 | 5.1:+24543557 | MS.gene86178:CDS |
| GGCACAAGGCAGAACAACCA+AGG | 0.585733 | 5.1:+24541206 | MS.gene86178:CDS |
| AGTCACGCCAGACGAGGATG+CGG | 0.585775 | 5.1:-24538811 | None:intergenic |
| GTGAGATACATAACAATGGC+GGG | 0.586630 | 5.1:+24543579 | MS.gene86178:CDS |
| ATTGTTATGTATCTCACCCA+TGG | 0.588077 | 5.1:-24543573 | None:intergenic |
| GCACAAGGCAGAACAACCAA+GGG | 0.590241 | 5.1:+24541207 | MS.gene86178:CDS |
| CCACCGCATCATCAATGTCA+GGG | 0.593019 | 5.1:+24538753 | None:intergenic |
| ACAGCATTAGTCACTGCCAT+AGG | 0.595173 | 5.1:-24539672 | None:intergenic |
| GCTTCCTCATCTGTTATACT+GGG | 0.596982 | 5.1:-24542145 | None:intergenic |
| GCATTAGTCACTGCCATAGG+AGG | 0.598918 | 5.1:-24539669 | None:intergenic |
| TGCGGCCTTTGATGTCGAGA+AGG | 0.614462 | 5.1:-24538793 | None:intergenic |
| CAGTGACTAATGCTGTGTCT+TGG | 0.615245 | 5.1:+24539679 | MS.gene86178:CDS |
| AAATCGAACGATCCATCAGG+AGG | 0.615509 | 5.1:-24541443 | None:intergenic |
| GCTGTGTCTTGGCGAAGTGA+AGG | 0.616774 | 5.1:+24539690 | MS.gene86178:CDS |
| CTGTGTCTTGGCGAAGTGAA+GGG | 0.618939 | 5.1:+24539691 | MS.gene86178:CDS |
| GAAACGTTCGGCTTCGATGG+CGG | 0.623972 | 5.1:-24538849 | None:intergenic |
| CCTTCCCAGTATAACAGATG+AGG | 0.630177 | 5.1:+24542141 | MS.gene86178:CDS |
| TTTAAACCAAGTTTACACTC+GGG | 0.636655 | 5.1:-24541165 | None:intergenic |
| TGGCGGGAGAGTATGAGCTA+AGG | 0.642064 | 5.1:+24543595 | MS.gene86178:CDS |
| CACCGCATCATCAATGTCAG+GGG | 0.662861 | 5.1:+24538754 | None:intergenic |
| CTCGTCTGGCGTGACTACCG+CGG | 0.677454 | 5.1:+24538818 | MS.gene86178:CDS |
| GGAGTCAGTTTAAGGAACGT+AGG | 0.677567 | 5.1:+24541686 | MS.gene86178:CDS |
| TGGTTATCCTCAATATACCG+AGG | 0.679386 | 5.1:+24539587 | MS.gene86178:CDS |
| AATCGAACGATCCATCAGGA+GGG | 0.687261 | 5.1:-24541442 | None:intergenic |
| GGTGAGATACATAACAATGG+CGG | 0.696604 | 5.1:+24543578 | MS.gene86178:CDS |
| ATGGGTGAGATACATAACAA+TGG | 0.702359 | 5.1:+24543575 | MS.gene86178:CDS |
| AAAATTCGATCCTTCCCTGG+AGG | 0.705831 | 5.1:+24541987 | MS.gene86178:CDS |
| AGAGTGTTATTAGAGGCACA+AGG | 0.715426 | 5.1:+24541192 | MS.gene86178:CDS |
| CGATGGCGGAGACGTCGCCG+CGG | 0.726811 | 5.1:-24538835 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGTATATAAAATTTCAT+GGG | - | chr5.1:24540771-24540790 | None:intergenic | 10.0% |
| !! | TTAAAGTATATAAAATTTCA+TGG | - | chr5.1:24540772-24540791 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTAAAAAACTGTT+TGG | - | chr5.1:24540849-24540868 | None:intergenic | 10.0% |
| !!! | TTTTTCTTTATTTTTTTTCT+TGG | + | chr5.1:24541738-24541757 | MS.gene86178:intron | 10.0% |
| !! | ATAAAATAAATCCTATTAGT+TGG | - | chr5.1:24541850-24541869 | None:intergenic | 15.0% |
| !! | TCAAATTATACATAAAATCA+CGG | - | chr5.1:24538949-24538968 | None:intergenic | 15.0% |
| !! | TGAAAATTTATGAATATCAA+TGG | - | chr5.1:24542521-24542540 | None:intergenic | 15.0% |
| !! | TGTATAAATAGAAGAATATA+TGG | + | chr5.1:24540114-24540133 | MS.gene86178:intron | 15.0% |
| !! | TTCTATTAAATCTAATTTCT+GGG | + | chr5.1:24540243-24540262 | MS.gene86178:intron | 15.0% |
| !! | TTTCATAAAAAACAAAAACT+TGG | - | chr5.1:24543113-24543132 | None:intergenic | 15.0% |
| !! | TTTCTATTAAATCTAATTTC+TGG | + | chr5.1:24540242-24540261 | MS.gene86178:intron | 15.0% |
| !!! | AAGTTTAAAATTTACATTTC+TGG | + | chr5.1:24540587-24540606 | MS.gene86178:intron | 15.0% |
| !!! | AATATAAGAAAATCATGTTT+TGG | - | chr5.1:24542249-24542268 | None:intergenic | 15.0% |
| !!! | AGTTTAAAATTTACATTTCT+GGG | + | chr5.1:24540588-24540607 | MS.gene86178:intron | 15.0% |
| !!! | TAACATTTTGATTATTTCAA+TGG | + | chr5.1:24542439-24542458 | MS.gene86178:intron | 15.0% |
| !!! | TATTGTGTTGTTTAAATTTT+TGG | + | chr5.1:24539510-24539529 | MS.gene86178:intron | 15.0% |
| !!! | TTAGTATGTTTTAATAGTTT+AGG | + | chr5.1:24543308-24543327 | MS.gene86178:intron | 15.0% |
| !!! | TTGAAAATTATGCATAATTT+TGG | + | chr5.1:24543383-24543402 | MS.gene86178:intron | 15.0% |
| !!! | TTGTTTTTTATGAAACATTA+GGG | + | chr5.1:24543118-24543137 | MS.gene86178:intron | 15.0% |
| !!! | TTTGTTTTTTATGAAACATT+AGG | + | chr5.1:24543117-24543136 | MS.gene86178:intron | 15.0% |
| !!! | TTTTCTTATATTCTAAATGT+TGG | + | chr5.1:24542257-24542276 | MS.gene86178:intron | 15.0% |
| !! | AAATATATAAGAATCAGCTT+AGG | - | chr5.1:24540395-24540414 | None:intergenic | 20.0% |
| !! | AACAATATACATTAGAGATT+AGG | + | chr5.1:24540361-24540380 | MS.gene86178:intron | 20.0% |
| !! | AATAGTTTAGGTACTAAATT+AGG | + | chr5.1:24543320-24543339 | MS.gene86178:intron | 20.0% |
| !! | ACAATATACATTAGAGATTA+GGG | + | chr5.1:24540362-24540381 | MS.gene86178:intron | 20.0% |
| !! | AGAGTAATAAACCATTAATT+TGG | + | chr5.1:24542641-24542660 | MS.gene86178:intron | 20.0% |
| !! | ATAGTTTAGGTACTAAATTA+GGG | + | chr5.1:24543321-24543340 | MS.gene86178:intron | 20.0% |
| !! | ATCAAATTTAGGTATCAAAA+TGG | - | chr5.1:24542052-24542071 | None:intergenic | 20.0% |
| !! | GATTAATCACAATCAAATTT+AGG | - | chr5.1:24542063-24542082 | None:intergenic | 20.0% |
| !! | TAACTTGGGAATAATTTAAT+GGG | - | chr5.1:24540729-24540748 | None:intergenic | 20.0% |
| !! | TATGTTTATGAGTTGTAATT+TGG | + | chr5.1:24539764-24539783 | MS.gene86178:intron | 20.0% |
| !! | TCAATTTCAAATTGCAAAAT+AGG | - | chr5.1:24543028-24543047 | None:intergenic | 20.0% |
| !! | TGCAATAAAACATACTAAAA+AGG | + | chr5.1:24542726-24542745 | MS.gene86178:intron | 20.0% |
| !! | TTAAATTATTCCCAAGTTAA+AGG | + | chr5.1:24540730-24540749 | MS.gene86178:intron | 20.0% |
| !!! | AACTTATAATTCACACATTT+TGG | - | chr5.1:24543182-24543201 | None:intergenic | 20.0% |
| !!! | ACTTTTCTATTTTTGTATTC+AGG | + | chr5.1:24539808-24539827 | MS.gene86178:intron | 20.0% |
| !!! | GTTGTTTAAATTTTTGGATT+TGG | + | chr5.1:24539516-24539535 | MS.gene86178:intron | 20.0% |
| !!! | GTTTTTTAAAAAAAATACGC+AGG | + | chr5.1:24540853-24540872 | MS.gene86178:intron | 20.0% |
| !!! | TAAGCATTATTTTGAAGAAT+TGG | + | chr5.1:24539250-24539269 | MS.gene86178:CDS | 20.0% |
| !!! | TTAACTTGGGAATAATTTAA+TGG | - | chr5.1:24540730-24540749 | None:intergenic | 20.0% |
| ! | AAACTTCATTACAAAAAACC+AGG | - | chr5.1:24542854-24542873 | None:intergenic | 25.0% |
| ! | AATATTCTTGTCAATAGCAA+TGG | + | chr5.1:24539857-24539876 | MS.gene86178:CDS | 25.0% |
| ! | AATCAAAATGTTAACAGAGA+CGG | - | chr5.1:24542432-24542451 | None:intergenic | 25.0% |
| ! | AATGAGGTAGTTATTATTAG+AGG | + | chr5.1:24539729-24539748 | MS.gene86178:intron | 25.0% |
| ! | AATTAGTCCCTAAACTATTA+AGG | + | chr5.1:24542689-24542708 | MS.gene86178:intron | 25.0% |
| ! | AATTTCACAGATACATCATA+CGG | - | chr5.1:24543428-24543447 | None:intergenic | 25.0% |
| ! | ATAGAAGAATATATGGATAG+AGG | + | chr5.1:24540121-24540140 | MS.gene86178:intron | 25.0% |
| ! | ATATTGATATGTGTGGTTAT+TGG | + | chr5.1:24540328-24540347 | MS.gene86178:intron | 25.0% |
| ! | ATTAGTCCCTAAACTATTAA+GGG | + | chr5.1:24542690-24542709 | MS.gene86178:intron | 25.0% |
| ! | ATTCCAGAAACAGTAAAATA+CGG | - | chr5.1:24542214-24542233 | None:intergenic | 25.0% |
| ! | ATTGAGAAATCATTATTCCT+GGG | + | chr5.1:24540656-24540675 | MS.gene86178:intron | 25.0% |
| ! | ATTTAAACCAAGTTTACACT+CGG | - | chr5.1:24541169-24541188 | None:intergenic | 25.0% |
| ! | CCTTATTCTATAACATATCA+CGG | - | chr5.1:24540036-24540055 | None:intergenic | 25.0% |
| ! | CGTGATATGTTATAGAATAA+GGG | + | chr5.1:24540034-24540053 | MS.gene86178:intron | 25.0% |
| ! | CTTCATAGTACAAAATACTT+CGG | - | chr5.1:24539337-24539356 | None:intergenic | 25.0% |
| ! | GAATAATTTAATGGGAATGA+TGG | - | chr5.1:24540721-24540740 | None:intergenic | 25.0% |
| ! | GATAAGTTACAAGAAAAATG+AGG | + | chr5.1:24539713-24539732 | MS.gene86178:CDS | 25.0% |
| ! | GCTCAAAAATTATTATTCCT+AGG | - | chr5.1:24540917-24540936 | None:intergenic | 25.0% |
| ! | GTGAATTATAAGTTTGACAT+AGG | + | chr5.1:24543188-24543207 | MS.gene86178:intron | 25.0% |
| ! | TAATAGTTTAGGGACTAATT+TGG | - | chr5.1:24542689-24542708 | None:intergenic | 25.0% |
| ! | TATCAAAATGGATGTTATTG+AGG | - | chr5.1:24542040-24542059 | None:intergenic | 25.0% |
| ! | TCTTATATTCTAAATGTTGG+AGG | + | chr5.1:24542260-24542279 | MS.gene86178:intron | 25.0% |
| ! | TGAATTCTCAATTGAAACAA+AGG | - | chr5.1:24539171-24539190 | None:intergenic | 25.0% |
| ! | TGATTGTGATTAATCAGATT+GGG | + | chr5.1:24542068-24542087 | MS.gene86178:intron | 25.0% |
| ! | TGCAAATGAAATTAGCAATT+TGG | + | chr5.1:24540474-24540493 | MS.gene86178:intron | 25.0% |
| ! | TTACATATGAGATTATCGAT+TGG | + | chr5.1:24543053-24543072 | MS.gene86178:intron | 25.0% |
| ! | TTCATAGTACAAAATACTTC+GGG | - | chr5.1:24539336-24539355 | None:intergenic | 25.0% |
| ! | TTGAAATTATGGTAAAAGCT+AGG | + | chr5.1:24541665-24541684 | MS.gene86178:CDS | 25.0% |
| ! | TTGAATATTCCTAGGAAAAT+TGG | - | chr5.1:24540819-24540838 | None:intergenic | 25.0% |
| ! | TTGATTGTGATTAATCAGAT+TGG | + | chr5.1:24542067-24542086 | MS.gene86178:intron | 25.0% |
| ! | TTTCGGTTTCTTATGATATT+TGG | + | chr5.1:24542896-24542915 | MS.gene86178:intron | 25.0% |
| !! | AAATAACTTCCAATTTTCCT+AGG | + | chr5.1:24540807-24540826 | MS.gene86178:intron | 25.0% |
| !! | AAATGATAGAGTGTTATTAG+AGG | + | chr5.1:24541185-24541204 | MS.gene86178:CDS | 25.0% |
| !! | TGATGTATTTTCATGCTTTA+GGG | + | chr5.1:24543147-24543166 | MS.gene86178:intron | 25.0% |
| !! | TTGATGTATTTTCATGCTTT+AGG | + | chr5.1:24543146-24543165 | MS.gene86178:intron | 25.0% |
| !!! | ACAATCTGTTTTTGACTTTT+TGG | + | chr5.1:24540272-24540291 | MS.gene86178:intron | 25.0% |
| !!! | TAATAAGTTTCTGTTTTGAG+AGG | + | chr5.1:24541511-24541530 | MS.gene86178:intron | 25.0% |
| !!! | TGATTATTTCAATGGATTGA+TGG | + | chr5.1:24542447-24542466 | MS.gene86178:intron | 25.0% |
| !!! | TTATTTTGAAGAATTGGAAG+AGG | + | chr5.1:24539256-24539275 | MS.gene86178:CDS | 25.0% |
| !!! | TTTTTCAAGGACAAAATTGA+CGG | + | chr5.1:24543355-24543374 | MS.gene86178:intron | 25.0% |
| !!! | TTTTTGTATTCAGGTTTTCT+TGG | + | chr5.1:24539817-24539836 | MS.gene86178:intron | 25.0% |
| AAAATGCTTTCTCTTTCTGT+GGG | - | chr5.1:24541557-24541576 | None:intergenic | 30.0% | |
| AAACTAACCAAAGGACTAAA+GGG | - | chr5.1:24542774-24542793 | None:intergenic | 30.0% | |
| AAAGAGTCGGATTGAAATTA+TGG | + | chr5.1:24541654-24541673 | MS.gene86178:CDS | 30.0% | |
| AAATACTCCATCATGAATGT+TGG | - | chr5.1:24541097-24541116 | None:intergenic | 30.0% | |
| AACCGAAATCATCACATAAT+CGG | - | chr5.1:24542884-24542903 | None:intergenic | 30.0% | |
| ACACTATACACAATATGCAA+TGG | - | chr5.1:24542401-24542420 | None:intergenic | 30.0% | |
| AGACAAACCCTTAATAGTTT+AGG | - | chr5.1:24542700-24542719 | None:intergenic | 30.0% | |
| AGGGAAGAAACAAAAATTGA+AGG | - | chr5.1:24542817-24542836 | None:intergenic | 30.0% | |
| AGTAGATGCTTTGATTGATT+TGG | + | chr5.1:24543467-24543486 | MS.gene86178:intron | 30.0% | |
| ATACCCAGGAATATAAAGAA+GGG | - | chr5.1:24540888-24540907 | None:intergenic | 30.0% | |
| ATCTAATGTTGAACTCTAAG+TGG | - | chr5.1:24541306-24541325 | None:intergenic | 30.0% | |
| ATTAAACCAATCCATAAGCA+TGG | - | chr5.1:24540536-24540555 | None:intergenic | 30.0% | |
| ATTATTCCCAAGTTAAAGGA+TGG | + | chr5.1:24540734-24540753 | MS.gene86178:intron | 30.0% | |
| ATTTGGTCTGTAATGAATTC+TGG | + | chr5.1:24542913-24542932 | MS.gene86178:intron | 30.0% | |
| CCGTGATATGTTATAGAATA+AGG | + | chr5.1:24540033-24540052 | MS.gene86178:intron | 30.0% | |
| CCTCTGTCTGATAAAAAATT+GGG | + | chr5.1:24542326-24542345 | MS.gene86178:intron | 30.0% | |
| CTATTAACCAACATTCATGA+TGG | + | chr5.1:24541087-24541106 | MS.gene86178:intron | 30.0% | |
| CTCAATCTTGTAACAAACAT+GGG | - | chr5.1:24540642-24540661 | None:intergenic | 30.0% | |
| CTCCTATGTTCCTAATTAAT+GGG | + | chr5.1:24540216-24540235 | MS.gene86178:intron | 30.0% | |
| CTTGATGAAATTATGGACTT+TGG | + | chr5.1:24539567-24539586 | MS.gene86178:CDS | 30.0% | |
| GACAAACCCTTAATAGTTTA+GGG | - | chr5.1:24542699-24542718 | None:intergenic | 30.0% | |
| GATTGAGAAATCATTATTCC+TGG | + | chr5.1:24540655-24540674 | MS.gene86178:intron | 30.0% | |
| GTTTATGAGTTGTAATTTGG+TGG | + | chr5.1:24539767-24539786 | MS.gene86178:intron | 30.0% | |
| TAAACTAACCAAAGGACTAA+AGG | - | chr5.1:24542775-24542794 | None:intergenic | 30.0% | |
| TAAGACTGATGCTTATAGAA+TGG | + | chr5.1:24539632-24539651 | MS.gene86178:CDS | 30.0% | |
| TAATTAGATCTGACGTTGTT+GGG | + | chr5.1:24539885-24539904 | MS.gene86178:CDS | 30.0% | |
| TAGAATCGAATCGAATCAAT+TGG | + | chr5.1:24542572-24542591 | MS.gene86178:intron | 30.0% | |
| TCTAATGTTGAACTCTAAGT+GGG | - | chr5.1:24541305-24541324 | None:intergenic | 30.0% | |
| TCTATTGAAGGGAAAACTAT+TGG | + | chr5.1:24540180-24540199 | MS.gene86178:intron | 30.0% | |
| TCTCAATCTTGTAACAAACA+TGG | - | chr5.1:24540643-24540662 | None:intergenic | 30.0% | |
| TCTCCTATGTTCCTAATTAA+TGG | + | chr5.1:24540215-24540234 | MS.gene86178:intron | 30.0% | |
| TGAAATTAGCAATTTGGACT+TGG | + | chr5.1:24540480-24540499 | MS.gene86178:intron | 30.0% | |
| TGAAGATTATTGAGAAGAGT+GGG | + | chr5.1:24543538-24543557 | MS.gene86178:CDS | 30.0% | |
| TGAGCTACTTGATGAAATTA+TGG | + | chr5.1:24539560-24539579 | MS.gene86178:CDS | 30.0% | |
| TGGTGAAACAAGGATATTTA+GGG | - | chr5.1:24541830-24541849 | None:intergenic | 30.0% | |
| TTAATTAGATCTGACGTTGT+TGG | + | chr5.1:24539884-24539903 | MS.gene86178:CDS | 30.0% | |
| TTATACATAAAATCACGGTG+TGG | - | chr5.1:24538944-24538963 | None:intergenic | 30.0% | |
| TTATTCCCAAGTTAAAGGAT+GGG | + | chr5.1:24540735-24540754 | MS.gene86178:intron | 30.0% | |
| TTGAAGATTATTGAGAAGAG+TGG | + | chr5.1:24543537-24543556 | MS.gene86178:CDS | 30.0% | |
| TTGAATTTGGATCTGAGAAA+TGG | - | chr5.1:24538912-24538931 | None:intergenic | 30.0% | |
| TTGGTGAAACAAGGATATTT+AGG | - | chr5.1:24541831-24541850 | None:intergenic | 30.0% | |
| TTGTATCTAGCTGAAATTTG+AGG | + | chr5.1:24540449-24540468 | MS.gene86178:intron | 30.0% | |
| TTTAAACCAAGTTTACACTC+GGG | - | chr5.1:24541168-24541187 | None:intergenic | 30.0% | |
| TTTAATCAGCTAGTACACTT+GGG | + | chr5.1:24540550-24540569 | MS.gene86178:intron | 30.0% | |
| ! | AGAGACTAAATAGATGGATT+GGG | + | chr5.1:24543267-24543286 | MS.gene86178:intron | 30.0% |
| ! | ATACCGTATTTTACTGTTTC+TGG | + | chr5.1:24542208-24542227 | MS.gene86178:CDS | 30.0% |
| ! | GATTGCAACATACAGTTTTA+TGG | + | chr5.1:24540007-24540026 | MS.gene86178:intron | 30.0% |
| ! | GGAGAGAATGATATTTTTCA+AGG | + | chr5.1:24543342-24543361 | MS.gene86178:intron | 30.0% |
| ! | TGAAAACTGACATGTGTTTT+TGG | + | chr5.1:24541120-24541139 | MS.gene86178:intron | 30.0% |
| ! | TGAAGATGAGAACATTTTTG+AGG | + | chr5.1:24539912-24539931 | MS.gene86178:CDS | 30.0% |
| ! | TTACATTTCTGGGAATACAT+GGG | + | chr5.1:24540598-24540617 | MS.gene86178:intron | 30.0% |
| ! | TTATGTCTGGCATTTTATGA+AGG | + | chr5.1:24541372-24541391 | MS.gene86178:intron | 30.0% |
| ! | TTTACATTTCTGGGAATACA+TGG | + | chr5.1:24540597-24540616 | MS.gene86178:intron | 30.0% |
| !! | ATAGAAAGCACCCATTAATT+AGG | - | chr5.1:24540229-24540248 | None:intergenic | 30.0% |
| !! | CAATTTTCGCTTTTCTTGTT+AGG | + | chr5.1:24538973-24538992 | MS.gene86178:intron | 30.0% |
| !! | GCTAGTTCTAAAATTATGTC+TGG | + | chr5.1:24541359-24541378 | MS.gene86178:intron | 30.0% |
| !! | TGAAGGTTTTATAGAGTACA+AGG | - | chr5.1:24542800-24542819 | None:intergenic | 30.0% |
| !! | TGTTAGAGAAGTTTGTTAGT+TGG | + | chr5.1:24540077-24540096 | MS.gene86178:intron | 30.0% |
| !! | TTTGATTGATTTGGTTGAGA+TGG | + | chr5.1:24543476-24543495 | MS.gene86178:intron | 30.0% |
| !!! | AGGCTATTTTTTTCTGCATT+GGG | + | chr5.1:24542280-24542299 | MS.gene86178:intron | 30.0% |
| !!! | TTTTACTGTTTCTGGAATAC+AGG | + | chr5.1:24542216-24542235 | MS.gene86178:CDS | 30.0% |
| !!! | TTTTGAGATCATCTAGCTTT+TGG | + | chr5.1:24539980-24539999 | MS.gene86178:intron | 30.0% |
| !!! | TTTTTTCTTGGCAGAAGATT+GGG | + | chr5.1:24541750-24541769 | MS.gene86178:intron | 30.0% |
| !!! | TTTTTTTCTTGGCAGAAGAT+TGG | + | chr5.1:24541749-24541768 | MS.gene86178:intron | 30.0% |
| AAAAGCTAGGAGTCAGTTTA+AGG | + | chr5.1:24541678-24541697 | MS.gene86178:CDS | 35.0% | |
| AACCTGTTTATCGATGAGTT+TGG | - | chr5.1:24538879-24538898 | None:intergenic | 35.0% | |
| AACTCCCTTCTTTATATTCC+TGG | + | chr5.1:24540881-24540900 | MS.gene86178:intron | 35.0% | |
| AAGATACGGTACAATCAACA+AGG | - | chr5.1:24541585-24541604 | None:intergenic | 35.0% | |
| AAGGGTAATTAGAGTAGTTC+AGG | + | chr5.1:24540052-24540071 | MS.gene86178:intron | 35.0% | |
| AAGTTAAAGGATGGGAAAGT+GGG | + | chr5.1:24540743-24540762 | MS.gene86178:intron | 35.0% | |
| AATCCATAAGCATGGAGAAT+CGG | - | chr5.1:24540528-24540547 | None:intergenic | 35.0% | |
| AATTAGATCTGACGTTGTTG+GGG | + | chr5.1:24539886-24539905 | MS.gene86178:CDS | 35.0% | |
| AATTGGAAGAGGAATCACTT+AGG | + | chr5.1:24539267-24539286 | MS.gene86178:CDS | 35.0% | |
| ACAAGGACTAAACTAACCAA+AGG | - | chr5.1:24542783-24542802 | None:intergenic | 35.0% | |
| ACACCGTTATCATATACAAC+CGG | - | chr5.1:24539019-24539038 | None:intergenic | 35.0% | |
| ACTAACGTTAGTGTTGTGTT+TGG | - | chr5.1:24539374-24539393 | None:intergenic | 35.0% | |
| ACTCCCTTCTTTATATTCCT+GGG | + | chr5.1:24540882-24540901 | MS.gene86178:intron | 35.0% | |
| AGAGTAGTGACTCTATTGAA+GGG | + | chr5.1:24540169-24540188 | MS.gene86178:intron | 35.0% | |
| AGGGTAATTAGAGTAGTTCA+GGG | + | chr5.1:24540053-24540072 | MS.gene86178:intron | 35.0% | |
| ATACCAGTGAATCTGCTAAT+CGG | - | chr5.1:24542954-24542973 | None:intergenic | 35.0% | |
| ATCATTATTCCTGGGTATCA+AGG | + | chr5.1:24540664-24540683 | MS.gene86178:intron | 35.0% | |
| ATCTCAAATTTCACGCGTAT+AGG | - | chr5.1:24542190-24542209 | None:intergenic | 35.0% | |
| ATGGGTGAGATACATAACAA+TGG | + | chr5.1:24543575-24543594 | MS.gene86178:CDS | 35.0% | |
| ATTGGAAGAGGAATCACTTA+GGG | + | chr5.1:24539268-24539287 | MS.gene86178:CDS | 35.0% | |
| ATTGTTATGTATCTCACCCA+TGG | - | chr5.1:24543576-24543595 | None:intergenic | 35.0% | |
| CAAAATGCTTTCTCTTTCTG+TGG | - | chr5.1:24541558-24541577 | None:intergenic | 35.0% | |
| CACCCATTAATTAGGAACAT+AGG | - | chr5.1:24540221-24540240 | None:intergenic | 35.0% | |
| CATACCCAGGAATATAAAGA+AGG | - | chr5.1:24540889-24540908 | None:intergenic | 35.0% | |
| CATCAATTTGACCATTTGGA+TGG | - | chr5.1:24543246-24543265 | None:intergenic | 35.0% | |
| CATCCAAATGGTCAAATTGA+TGG | + | chr5.1:24543244-24543263 | MS.gene86178:intron | 35.0% | |
| CGAATCGAATCAATTGGTAA+TGG | + | chr5.1:24542578-24542597 | MS.gene86178:intron | 35.0% | |
| CTAAAAGACCAAGACAAACA+TGG | - | chr5.1:24543508-24543527 | None:intergenic | 35.0% | |
| CTCACTTAAAATCTTTGCCT+CGG | - | chr5.1:24539607-24539626 | None:intergenic | 35.0% | |
| CTCCGATTATGTGATGATTT+CGG | + | chr5.1:24542879-24542898 | MS.gene86178:intron | 35.0% | |
| CTCCTTTCTTTGATACTTTC+AGG | + | chr5.1:24542093-24542112 | MS.gene86178:intron | 35.0% | |
| GAGAGACTAAATAGATGGAT+TGG | + | chr5.1:24543266-24543285 | MS.gene86178:intron | 35.0% | |
| GATCCGGTTGTATATGATAA+CGG | + | chr5.1:24539013-24539032 | MS.gene86178:CDS | 35.0% | |
| GCCTCTGTCTGATAAAAAAT+TGG | + | chr5.1:24542325-24542344 | MS.gene86178:intron | 35.0% | |
| GCTATCTGCAAAATATCTAC+CGG | - | chr5.1:24541019-24541038 | None:intergenic | 35.0% | |
| GTGGAGTGTGAATTTGAATT+TGG | - | chr5.1:24538925-24538944 | None:intergenic | 35.0% | |
| GTTTAATCAGCTAGTACACT+TGG | + | chr5.1:24540549-24540568 | MS.gene86178:intron | 35.0% | |
| TAGAGTAGTGACTCTATTGA+AGG | + | chr5.1:24540168-24540187 | MS.gene86178:intron | 35.0% | |
| TAGTTCAGGAGCCAAATTAA+TGG | - | chr5.1:24542655-24542674 | None:intergenic | 35.0% | |
| TATAAGAATCAGCTTAGGCT+TGG | - | chr5.1:24540390-24540409 | None:intergenic | 35.0% | |
| TCCAGGTTAAGCCTTTAATT+TGG | + | chr5.1:24541605-24541624 | MS.gene86178:intron | 35.0% | |
| TCTCCATCAATTTGACCATT+TGG | - | chr5.1:24543250-24543269 | None:intergenic | 35.0% | |
| TGATGAACAATCTCAAGATC+CGG | + | chr5.1:24538997-24539016 | MS.gene86178:CDS | 35.0% | |
| TGATGGAGAGACTAAATAGA+TGG | + | chr5.1:24543261-24543280 | MS.gene86178:intron | 35.0% | |
| TTAATCAGCTAGTACACTTG+GGG | + | chr5.1:24540551-24540570 | MS.gene86178:intron | 35.0% | |
| TTGAGATCTACTGCATTTGT+AGG | + | chr5.1:24539952-24539971 | MS.gene86178:intron | 35.0% | |
| TTTGCTTCCACCCAAATTAA+AGG | - | chr5.1:24541619-24541638 | None:intergenic | 35.0% | |
| TTTGGCATATTCTAATGCAG+TGG | + | chr5.1:24541138-24541157 | MS.gene86178:intron | 35.0% | |
| ! | AATGGGAATGATGGAAGTTA+TGG | - | chr5.1:24540712-24540731 | None:intergenic | 35.0% |
| ! | ACTTTCCCATCCTTTAACTT+GGG | - | chr5.1:24540743-24540762 | None:intergenic | 35.0% |
| ! | AGTTGTAATTTGGTGGTTTG+AGG | + | chr5.1:24539774-24539793 | MS.gene86178:intron | 35.0% |
| ! | ATGGGAAGTTATTTCATTCC+TGG | - | chr5.1:24540693-24540712 | None:intergenic | 35.0% |
| ! | ATGGGAATGATGGAAGTTAT+GGG | - | chr5.1:24540711-24540730 | None:intergenic | 35.0% |
| ! | ATTTAGGGCAGTCTAAATTC+TGG | - | chr5.1:24541815-24541834 | None:intergenic | 35.0% |
| ! | CAGATCAATGCATCTTTTTC+AGG | - | chr5.1:24541966-24541985 | None:intergenic | 35.0% |
| ! | CATATCTGTCAATTTTCTGC+CGG | + | chr5.1:24540997-24541016 | MS.gene86178:intron | 35.0% |
| ! | CATATGAGATTATCGATTGG+AGG | + | chr5.1:24543056-24543075 | MS.gene86178:intron | 35.0% |
| ! | CCAGGTTAAGCCTTTAATTT+GGG | + | chr5.1:24541606-24541625 | MS.gene86178:intron | 35.0% |
| ! | CTGAAAAAGATGCATTGATC+TGG | + | chr5.1:24541964-24541983 | MS.gene86178:CDS | 35.0% |
| ! | TCCTTGTTTCACCAACTAAT+AGG | + | chr5.1:24541836-24541855 | MS.gene86178:intron | 35.0% |
| ! | TGGGAAGTTATTTCATTCCT+GGG | - | chr5.1:24540692-24540711 | None:intergenic | 35.0% |
| ! | TTTAGGGCAGTCTAAATTCT+GGG | - | chr5.1:24541814-24541833 | None:intergenic | 35.0% |
| ! | TTTTTCTTGGCAGAAGATTG+GGG | + | chr5.1:24541751-24541770 | MS.gene86178:intron | 35.0% |
| !! | CATGTTTGTCTTGGTCTTTT+AGG | + | chr5.1:24543506-24543525 | MS.gene86178:intron | 35.0% |
| !! | CTCCTGAAAGTATCAAAGAA+AGG | - | chr5.1:24542098-24542117 | None:intergenic | 35.0% |
| !! | GAGACTAAATAGATGGATTG+GGG | + | chr5.1:24543268-24543287 | MS.gene86178:intron | 35.0% |
| !! | TAAATAGATGGATTGGGGAA+TGG | + | chr5.1:24543273-24543292 | MS.gene86178:intron | 35.0% |
| !! | TAGGGATAACTTTGTTGTTG+TGG | + | chr5.1:24539286-24539305 | MS.gene86178:CDS | 35.0% |
| !! | TATTCAGGTTTTCTTGGATG+TGG | + | chr5.1:24539823-24539842 | MS.gene86178:intron | 35.0% |
| !! | TCCTATTAGTTGGTGAAACA+AGG | - | chr5.1:24541840-24541859 | None:intergenic | 35.0% |
| !! | TTGAAAAGCACTCAAAGAGT+CGG | + | chr5.1:24541641-24541660 | MS.gene86178:CDS | 35.0% |
| !! | TTGGTAATGGAAAAGAGAAC+TGG | + | chr5.1:24542591-24542610 | MS.gene86178:intron | 35.0% |
| !!! | ATTCGTGTGTTTTTTCTTGC+AGG | + | chr5.1:24539223-24539242 | MS.gene86178:intron | 35.0% |
| !!! | CCCAATTTTTTATCAGACAG+AGG | - | chr5.1:24542329-24542348 | None:intergenic | 35.0% |
| !!! | GAGGCTATTTTTTTCTGCAT+TGG | + | chr5.1:24542279-24542298 | MS.gene86178:intron | 35.0% |
| !!! | TAAGTTTCTGTTTTGAGAGG+TGG | + | chr5.1:24541514-24541533 | MS.gene86178:intron | 35.0% |
| AATAGGTCGAGTTTCAGTCA+TGG | - | chr5.1:24543011-24543030 | None:intergenic | 40.0% | |
| ACCTCACTGCGTGAATTAAA+AGG | - | chr5.1:24541785-24541804 | None:intergenic | 40.0% | |
| AGGCTTAACCTGGAAAGATA+CGG | - | chr5.1:24541599-24541618 | None:intergenic | 40.0% | |
| AGGTCGGTCATACTGAATAA+TGG | + | chr5.1:24540973-24540992 | MS.gene86178:intron | 40.0% | |
| AGTTACTCAAAGACCTCCTA+TGG | + | chr5.1:24539656-24539675 | MS.gene86178:CDS | 40.0% | |
| AGTTTGACATAGGAGACAGT+TGG | + | chr5.1:24543198-24543217 | MS.gene86178:intron | 40.0% | |
| ATACTTGTCTTGTCGATGTC+TGG | + | chr5.1:24539429-24539448 | MS.gene86178:intron | 40.0% | |
| ATATGTGTGGTTATTGGCGA+GGG | + | chr5.1:24540334-24540353 | MS.gene86178:intron | 40.0% | |
| ATCAAATCGAACGATCCATC+AGG | - | chr5.1:24541449-24541468 | None:intergenic | 40.0% | |
| ATCTTTGCCTCGGTATATTG+AGG | - | chr5.1:24539597-24539616 | None:intergenic | 40.0% | |
| ATTTCTTTCATCCCTCCTGA+TGG | + | chr5.1:24541431-24541450 | MS.gene86178:CDS | 40.0% | |
| CAACTCAATCTCGACATTTG+TGG | - | chr5.1:24541880-24541899 | None:intergenic | 40.0% | |
| CAAGTTAAAGGATGGGAAAG+TGG | + | chr5.1:24540742-24540761 | MS.gene86178:intron | 40.0% | |
| CACCAAACTCATCGATAAAC+AGG | + | chr5.1:24538874-24538893 | MS.gene86178:CDS | 40.0% | |
| CACTTTCCCATCCTTTAACT+TGG | - | chr5.1:24540744-24540763 | None:intergenic | 40.0% | |
| CCCAAATTAAAGGCTTAACC+TGG | - | chr5.1:24541609-24541628 | None:intergenic | 40.0% | |
| CCTAATGTTCGAACGTCAAT+GGG | + | chr5.1:24541924-24541943 | MS.gene86178:CDS | 40.0% | |
| GAGAACTGGACATCAGAAAA+AGG | + | chr5.1:24542605-24542624 | MS.gene86178:intron | 40.0% | |
| GATTCTCCATGCTTATGGAT+TGG | + | chr5.1:24540527-24540546 | MS.gene86178:intron | 40.0% | |
| GCACACTCTTGAATATTCCT+AGG | - | chr5.1:24540827-24540846 | None:intergenic | 40.0% | |
| GCTTCCTCATCTGTTATACT+GGG | - | chr5.1:24542148-24542167 | None:intergenic | 40.0% | |
| GGTAATCACCATGTTTGTCT+TGG | + | chr5.1:24543497-24543516 | MS.gene86178:intron | 40.0% | |
| GGTGAGATACATAACAATGG+CGG | + | chr5.1:24543578-24543597 | MS.gene86178:CDS | 40.0% | |
| GTGAGATACATAACAATGGC+GGG | + | chr5.1:24543579-24543598 | MS.gene86178:CDS | 40.0% | |
| GTTTGACATAGGAGACAGTT+GGG | + | chr5.1:24543199-24543218 | MS.gene86178:intron | 40.0% | |
| TAATCAGCTAGTACACTTGG+GGG | + | chr5.1:24540552-24540571 | MS.gene86178:intron | 40.0% | |
| TACTTGTCTTGTCGATGTCT+GGG | + | chr5.1:24539430-24539449 | MS.gene86178:intron | 40.0% | |
| TATTGAGAAGAGTGGGTATC+AGG | + | chr5.1:24543545-24543564 | MS.gene86178:CDS | 40.0% | |
| TCAGCTGTGAATGTATACAG+TGG | - | chr5.1:24541047-24541066 | None:intergenic | 40.0% | |
| TCCTAATGTTCGAACGTCAA+TGG | + | chr5.1:24541923-24541942 | MS.gene86178:CDS | 40.0% | |
| TGACGTTCGAACATTAGGAT+TGG | - | chr5.1:24541922-24541941 | None:intergenic | 40.0% | |
| TGATTGTACCGTATCTTTCC+AGG | + | chr5.1:24541588-24541607 | MS.gene86178:intron | 40.0% | |
| TGCTTCCTCATCTGTTATAC+TGG | - | chr5.1:24542149-24542168 | None:intergenic | 40.0% | |
| TGGACATCAGAAAAAGGATC+TGG | + | chr5.1:24542611-24542630 | MS.gene86178:intron | 40.0% | |
| TGGAGAGAAAGTGATAGTTC+AGG | - | chr5.1:24542669-24542688 | None:intergenic | 40.0% | |
| TGGTTATCCTCAATATACCG+AGG | + | chr5.1:24539587-24539606 | MS.gene86178:CDS | 40.0% | |
| TTGGATCTGAGAAATGGAAG+TGG | - | chr5.1:24538906-24538925 | None:intergenic | 40.0% | |
| TTTCCGATTAGCAGATTCAC+TGG | + | chr5.1:24542948-24542967 | MS.gene86178:intron | 40.0% | |
| ! | AAGCTTTCGATTGGAAGTGT+TGG | + | chr5.1:24539462-24539481 | MS.gene86178:intron | 40.0% |
| ! | AGAGTGTTATTAGAGGCACA+AGG | + | chr5.1:24541192-24541211 | MS.gene86178:CDS | 40.0% |
| ! | ATTTCTGGGAATACATGGGT+AGG | + | chr5.1:24540602-24540621 | MS.gene86178:intron | 40.0% |
| ! | CATTTTCAAATCGAGCCAAC+CGG | - | chr5.1:24541403-24541422 | None:intergenic | 40.0% |
| ! | CGTATAGGAGCTTTTCTTTC+AGG | - | chr5.1:24542175-24542194 | None:intergenic | 40.0% |
| ! | CGTTCGATTTGATGACATAC+AGG | + | chr5.1:24541456-24541475 | MS.gene86178:CDS | 40.0% |
| ! | GAGTTTGGTGAAGAAACGTT+CGG | - | chr5.1:24538864-24538883 | None:intergenic | 40.0% |
| ! | GGAGGGTATATTGATATGTG+TGG | + | chr5.1:24540321-24540340 | MS.gene86178:intron | 40.0% |
| ! | TTGGTGTTTCTACTCGTATG+TGG | + | chr5.1:24540291-24540310 | MS.gene86178:intron | 40.0% |
| ! | TTTCTGGGAATACATGGGTA+GGG | + | chr5.1:24540603-24540622 | MS.gene86178:intron | 40.0% |
| !! | ATGGATTGGGGAATGGTTTA+AGG | + | chr5.1:24543280-24543299 | MS.gene86178:intron | 40.0% |
| !! | GCATTTTATGAAGGTGTGTC+CGG | + | chr5.1:24541381-24541400 | MS.gene86178:intron | 40.0% |
| !! | GGTTAAGCCTTTAATTTGGG+TGG | + | chr5.1:24541609-24541628 | MS.gene86178:intron | 40.0% |
| !! | TCCTTTTAATTCACGCAGTG+AGG | + | chr5.1:24541781-24541800 | MS.gene86178:intron | 40.0% |
| !! | TTAGGATTGGTTGCATCAAC+AGG | - | chr5.1:24541909-24541928 | None:intergenic | 40.0% |
| AAAATTCGATCCTTCCCTGG+AGG | + | chr5.1:24541987-24542006 | MS.gene86178:CDS | 45.0% | |
| AAATCGAACGATCCATCAGG+AGG | - | chr5.1:24541446-24541465 | None:intergenic | 45.0% | |
| AATCAGCTAGTACACTTGGG+GGG | + | chr5.1:24540553-24540572 | MS.gene86178:intron | 45.0% | |
| AATCGAACGATCCATCAGGA+GGG | - | chr5.1:24541445-24541464 | None:intergenic | 45.0% | |
| ACAGCATTAGTCACTGCCAT+AGG | - | chr5.1:24539675-24539694 | None:intergenic | 45.0% | |
| ACCAGGAGAAAGAGAAAGTG+AGG | - | chr5.1:24542837-24542856 | None:intergenic | 45.0% | |
| ACTTGTCTTGTCGATGTCTG+GGG | + | chr5.1:24539431-24539450 | MS.gene86178:intron | 45.0% | |
| CAAGGGAAAAGCGATAGACT+TGG | + | chr5.1:24541224-24541243 | MS.gene86178:CDS | 45.0% | |
| CAGTGACTAATGCTGTGTCT+TGG | + | chr5.1:24539679-24539698 | MS.gene86178:CDS | 45.0% | |
| CCAGGAGAAAGAGAAAGTGA+GGG | - | chr5.1:24542836-24542855 | None:intergenic | 45.0% | |
| CCCATTGACGTTCGAACATT+AGG | - | chr5.1:24541927-24541946 | None:intergenic | 45.0% | |
| CCTCATCTGTTATACTGGGA+AGG | - | chr5.1:24542144-24542163 | None:intergenic | 45.0% | |
| CCTTCCCAGTATAACAGATG+AGG | + | chr5.1:24542141-24542160 | MS.gene86178:CDS | 45.0% | |
| CTACTCGTATGTGGATACTC+TGG | + | chr5.1:24540300-24540319 | MS.gene86178:intron | 45.0% | |
| CTGTTCCTTCTCGACATCAA+AGG | + | chr5.1:24538788-24538807 | MS.gene86178:CDS | 45.0% | |
| GATATGTGTGGTTATTGGCG+AGG | + | chr5.1:24540333-24540352 | MS.gene86178:intron | 45.0% | |
| GCAATGGACAAGCTTTCGAT+TGG | + | chr5.1:24539453-24539472 | MS.gene86178:intron | 45.0% | |
| GGAGTCAGTTTAAGGAACGT+AGG | + | chr5.1:24541686-24541705 | MS.gene86178:CDS | 45.0% | |
| GTCGAGTTTCAGTCATGGTT+GGG | - | chr5.1:24543006-24543025 | None:intergenic | 45.0% | |
| TCGAGTTTCAGTCATGGTTG+GGG | - | chr5.1:24543005-24543024 | None:intergenic | 45.0% | |
| TCGTATGTGGATACTCTGGA+GGG | + | chr5.1:24540304-24540323 | MS.gene86178:intron | 45.0% | |
| TGGAAAATTCGATCCTTCCC+TGG | + | chr5.1:24541984-24542003 | MS.gene86178:CDS | 45.0% | |
| TTCCTAGGAACAACATACCC+AGG | - | chr5.1:24540902-24540921 | None:intergenic | 45.0% | |
| TTCCTGGGTATGTTGTTCCT+AGG | + | chr5.1:24540897-24540916 | MS.gene86178:intron | 45.0% | |
| TTGGTTGCATCAACAGGAAC+AGG | - | chr5.1:24541903-24541922 | None:intergenic | 45.0% | |
| ! | TCAGGTTTTCTTGGATGTGG+TGG | + | chr5.1:24539826-24539845 | MS.gene86178:intron | 45.0% |
| ! | TTTATGAAGGTGTGTCCGGT+TGG | + | chr5.1:24541385-24541404 | MS.gene86178:intron | 45.0% |
| !! | CAAGTCTATCGCTTTTCCCT+TGG | - | chr5.1:24541226-24541245 | None:intergenic | 45.0% |
| !! | CAGACAGAGGCATTGAATGA+AGG | - | chr5.1:24542316-24542335 | None:intergenic | 45.0% |
| !! | GTACCGATTCTCCATGCTTA+TGG | + | chr5.1:24540522-24540541 | MS.gene86178:intron | 45.0% |
| !! | TCGTGGGGGCATTTATTTCA+CGG | - | chr5.1:24540940-24540959 | None:intergenic | 45.0% |
| !!! | TACTTTAAAAAAAAAAAAAA+AGG | + | chr5.1:24540784-24540803 | MS.gene86178:intron | 5.0% |
| ACCTCCTAAAGAACACCTCG+TGG | - | chr5.1:24540957-24540976 | None:intergenic | 50.0% | |
| ATCAGCTAGTACACTTGGGG+GGG | + | chr5.1:24540554-24540573 | MS.gene86178:intron | 50.0% | |
| CCCTCACTTTCTCTTTCTCC+TGG | + | chr5.1:24542833-24542852 | MS.gene86178:intron | 50.0% | |
| CCTCCTAAAGAACACCTCGT+GGG | - | chr5.1:24540956-24540975 | None:intergenic | 50.0% | |
| CGAGTTTCAGTCATGGTTGG+GGG | - | chr5.1:24543004-24543023 | None:intergenic | 50.0% | |
| CTCCTAAAGAACACCTCGTG+GGG | - | chr5.1:24540955-24540974 | None:intergenic | 50.0% | |
| CTCGTATGTGGATACTCTGG+AGG | + | chr5.1:24540303-24540322 | MS.gene86178:intron | 50.0% | |
| CTGTGTCTTGGCGAAGTGAA+GGG | + | chr5.1:24539691-24539710 | MS.gene86178:CDS | 50.0% | |
| GAAGAAACGTTCGGCTTCGA+TGG | - | chr5.1:24538855-24538874 | None:intergenic | 50.0% | |
| GACATACAGGCTCAGTACAC+AGG | + | chr5.1:24541469-24541488 | MS.gene86178:CDS | 50.0% | |
| GCACAAGGCAGAACAACCAA+GGG | + | chr5.1:24541207-24541226 | MS.gene86178:CDS | 50.0% | |
| GCATTAGTCACTGCCATAGG+AGG | - | chr5.1:24539672-24539691 | None:intergenic | 50.0% | |
| GGCAGTTAACGCCATCCAAA+TGG | + | chr5.1:24543232-24543251 | MS.gene86178:intron | 50.0% | |
| GGTATGCCCGAGTGTAAACT+TGG | + | chr5.1:24541159-24541178 | MS.gene86178:CDS | 50.0% | |
| GGTCGAGTTTCAGTCATGGT+TGG | - | chr5.1:24543007-24543026 | None:intergenic | 50.0% | |
| GTGAAATAAATGCCCCCACG+AGG | + | chr5.1:24540939-24540958 | MS.gene86178:intron | 50.0% | |
| TCCTAAAGAACACCTCGTGG+GGG | - | chr5.1:24540954-24540973 | None:intergenic | 50.0% | |
| TCGAAGATACCTTGCCTCCA+GGG | - | chr5.1:24542004-24542023 | None:intergenic | 50.0% | |
| TGGGTATCAGGCTCTTCCAT+GGG | + | chr5.1:24543557-24543576 | MS.gene86178:CDS | 50.0% | |
| TTCGAAGATACCTTGCCTCC+AGG | - | chr5.1:24542005-24542024 | None:intergenic | 50.0% | |
| ! | CGAGGTGTTCTTTAGGAGGT+CGG | + | chr5.1:24540957-24540976 | MS.gene86178:intron | 50.0% |
| ! | GAGGCAAGGTATCTTCGAAG+TGG | + | chr5.1:24542006-24542025 | MS.gene86178:intron | 50.0% |
| !! | CGTGGGGGCATTTATTTCAC+GGG | - | chr5.1:24540939-24540958 | None:intergenic | 50.0% |
| AGATACCTTGCCTCCAGGGA+AGG | - | chr5.1:24542000-24542019 | None:intergenic | 55.0% | |
| GAAACGTTCGGCTTCGATGG+CGG | - | chr5.1:24538852-24538871 | None:intergenic | 55.0% | |
| GATGGCGTTAACTGCCACGT+TGG | - | chr5.1:24543228-24543247 | None:intergenic | 55.0% | |
| GCAATGGTGAGAGAGACAGC+AGG | - | chr5.1:24542385-24542404 | None:intergenic | 55.0% | |
| GCTGTGTCTTGGCGAAGTGA+AGG | + | chr5.1:24539690-24539709 | MS.gene86178:CDS | 55.0% | |
| GGCACAAGGCAGAACAACCA+AGG | + | chr5.1:24541206-24541225 | MS.gene86178:CDS | 55.0% | |
| GTGGGTATCAGGCTCTTCCA+TGG | + | chr5.1:24543556-24543575 | MS.gene86178:CDS | 55.0% | |
| TCCTGGGAACCTTGATACCC+AGG | - | chr5.1:24540676-24540695 | None:intergenic | 55.0% | |
| TCCTGGGTATCAAGGTTCCC+AGG | + | chr5.1:24540672-24540691 | MS.gene86178:intron | 55.0% | |
| TGCGGCCTTTGATGTCGAGA+AGG | - | chr5.1:24538796-24538815 | None:intergenic | 55.0% | |
| TGGTGAGAGAGACAGCAGGA+AGG | - | chr5.1:24542381-24542400 | None:intergenic | 55.0% | |
| ! | AGACAGTTGGGTTGCCAACG+TGG | + | chr5.1:24543211-24543230 | MS.gene86178:intron | 55.0% |
| ! | CCCACGAGGTGTTCTTTAGG+AGG | + | chr5.1:24540953-24540972 | MS.gene86178:intron | 55.0% |
| ! | CTTGTCGATGTCTGGGGCAA+TGG | + | chr5.1:24539437-24539456 | MS.gene86178:intron | 55.0% |
| ! | TGGCGGGAGAGTATGAGCTA+AGG | + | chr5.1:24543595-24543614 | MS.gene86178:CDS | 55.0% |
| AGTCACGCCAGACGAGGATG+CGG | - | chr5.1:24538814-24538833 | None:intergenic | 60.0% | |
| GTGTGGTTATTGGCGAGGGC+TGG | + | chr5.1:24540338-24540357 | MS.gene86178:intron | 60.0% | |
| TCAAAGGCCGCATCCTCGTC+TGG | + | chr5.1:24538804-24538823 | MS.gene86178:CDS | 60.0% | |
| TCGATCCTTCCCTGGAGGCA+AGG | + | chr5.1:24541992-24542011 | MS.gene86178:CDS | 60.0% | |
| ! | GCCCCCACGAGGTGTTCTTT+AGG | + | chr5.1:24540950-24540969 | MS.gene86178:intron | 60.0% |
| CTCGTCTGGCGTGACTACCG+CGG | + | chr5.1:24538818-24538837 | MS.gene86178:CDS | 65.0% | |
| CGCGGTAGTCACGCCAGACG+AGG | - | chr5.1:24538820-24538839 | None:intergenic | 70.0% | |
| !! | CGATGGCGGAGACGTCGCCG+CGG | - | chr5.1:24538838-24538857 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 24538767 | 24543626 | 24538767 | ID=MS.gene86178 |
| chr5.1 | mRNA | 24538767 | 24543626 | 24538767 | ID=MS.gene86178.t1;Parent=MS.gene86178 |
| chr5.1 | exon | 24538767 | 24538895 | 24538767 | ID=MS.gene86178.t1.exon1;Parent=MS.gene86178.t1 |
| chr5.1 | CDS | 24538767 | 24538895 | 24538767 | ID=cds.MS.gene86178.t1;Parent=MS.gene86178.t1 |
| chr5.1 | exon | 24538995 | 24539141 | 24538995 | ID=MS.gene86178.t1.exon2;Parent=MS.gene86178.t1 |
| chr5.1 | CDS | 24538995 | 24539141 | 24538995 | ID=cds.MS.gene86178.t1;Parent=MS.gene86178.t1 |
| chr5.1 | exon | 24539245 | 24539307 | 24539245 | ID=MS.gene86178.t1.exon3;Parent=MS.gene86178.t1 |
| chr5.1 | CDS | 24539245 | 24539307 | 24539245 | ID=cds.MS.gene86178.t1;Parent=MS.gene86178.t1 |
| chr5.1 | exon | 24539558 | 24539734 | 24539558 | ID=MS.gene86178.t1.exon4;Parent=MS.gene86178.t1 |
| chr5.1 | CDS | 24539558 | 24539734 | 24539558 | ID=cds.MS.gene86178.t1;Parent=MS.gene86178.t1 |
| chr5.1 | exon | 24539830 | 24539933 | 24539830 | ID=MS.gene86178.t1.exon5;Parent=MS.gene86178.t1 |
| chr5.1 | CDS | 24539830 | 24539933 | 24539830 | ID=cds.MS.gene86178.t1;Parent=MS.gene86178.t1 |
| chr5.1 | exon | 24541158 | 24541265 | 24541158 | ID=MS.gene86178.t1.exon6;Parent=MS.gene86178.t1 |
| chr5.1 | CDS | 24541158 | 24541265 | 24541158 | ID=cds.MS.gene86178.t1;Parent=MS.gene86178.t1 |
| chr5.1 | exon | 24541394 | 24541490 | 24541394 | ID=MS.gene86178.t1.exon7;Parent=MS.gene86178.t1 |
| chr5.1 | CDS | 24541394 | 24541490 | 24541394 | ID=cds.MS.gene86178.t1;Parent=MS.gene86178.t1 |
| chr5.1 | exon | 24541610 | 24541707 | 24541610 | ID=MS.gene86178.t1.exon8;Parent=MS.gene86178.t1 |
| chr5.1 | CDS | 24541610 | 24541707 | 24541610 | ID=cds.MS.gene86178.t1;Parent=MS.gene86178.t1 |
| chr5.1 | exon | 24541872 | 24542013 | 24541872 | ID=MS.gene86178.t1.exon9;Parent=MS.gene86178.t1 |
| chr5.1 | CDS | 24541872 | 24542013 | 24541872 | ID=cds.MS.gene86178.t1;Parent=MS.gene86178.t1 |
| chr5.1 | exon | 24542115 | 24542237 | 24542115 | ID=MS.gene86178.t1.exon10;Parent=MS.gene86178.t1 |
| chr5.1 | CDS | 24542115 | 24542237 | 24542115 | ID=cds.MS.gene86178.t1;Parent=MS.gene86178.t1 |
| chr5.1 | exon | 24543528 | 24543626 | 24543528 | ID=MS.gene86178.t1.exon11;Parent=MS.gene86178.t1 |
| chr5.1 | CDS | 24543528 | 24543626 | 24543528 | ID=cds.MS.gene86178.t1;Parent=MS.gene86178.t1 |
| Gene Sequence |
| Protein sequence |
