Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09656.t1 | XP_003611473.1 | 100 | 438 | 0 | 0 | 1 | 438 | 1 | 438 | 7.60E-251 | 875.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09656.t1 | O23140 | 94.3 | 438 | 25 | 0 | 1 | 438 | 1 | 438 | 2.1e-241 | 835.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09656.t1 | G7JZX7 | 100.0 | 438 | 0 | 0 | 1 | 438 | 1 | 438 | 5.5e-251 | 875.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene09656 | 0.840573 | 8.02E-58 | -1.69E-46 |
| MS.gene04918 | MS.gene09656 | 0.84287 | 1.98E-58 | -1.69E-46 |
| MS.gene04920 | MS.gene09656 | 0.815187 | 1.05E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene09656 | 0.861501 | 9.81E-64 | -1.69E-46 |
| MS.gene049283 | MS.gene09656 | 0.830485 | 2.86E-55 | -1.69E-46 |
| MS.gene049350 | MS.gene09656 | 0.821824 | 3.29E-53 | -1.69E-46 |
| MS.gene049368 | MS.gene09656 | 0.80685 | 6.73E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene09656 | 0.819469 | 1.14E-52 | -1.69E-46 |
| MS.gene049711 | MS.gene09656 | 0.828357 | 9.40E-55 | -1.69E-46 |
| MS.gene049807 | MS.gene09656 | 0.847277 | 1.28E-59 | -1.69E-46 |
| MS.gene049983 | MS.gene09656 | 0.84442 | 7.64E-59 | -1.69E-46 |
| MS.gene050414 | MS.gene09656 | 0.805959 | 1.04E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene09656 | 0.816787 | 4.62E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene09656 | 0.813725 | 2.21E-51 | -1.69E-46 |
| MS.gene050562 | MS.gene09656 | 0.818502 | 1.90E-52 | -1.69E-46 |
| MS.gene050646 | MS.gene09656 | 0.807744 | 4.35E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene09656 | 0.800925 | 1.15E-48 | -1.69E-46 |
| MS.gene051121 | MS.gene09656 | 0.820038 | 8.47E-53 | -1.69E-46 |
| MS.gene051234 | MS.gene09656 | 0.80308 | 4.13E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene09656 | 0.816636 | 4.99E-52 | -1.69E-46 |
| MS.gene051332 | MS.gene09656 | 0.810495 | 1.12E-50 | -1.69E-46 |
| MS.gene051699 | MS.gene09656 | 0.8265 | 2.62E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene09656 | 0.84149 | 4.60E-58 | -1.69E-46 |
| MS.gene051832 | MS.gene09656 | 0.801486 | 8.80E-49 | -1.69E-46 |
| MS.gene051848 | MS.gene09656 | -0.804681 | 1.92E-49 | -1.69E-46 |
| MS.gene051852 | MS.gene09656 | 0.844058 | 9.56E-59 | -1.69E-46 |
| MS.gene052016 | MS.gene09656 | 0.828816 | 7.29E-55 | -1.69E-46 |
| MS.gene052118 | MS.gene09656 | 0.805635 | 1.21E-49 | -1.69E-46 |
| MS.gene052239 | MS.gene09656 | -0.803823 | 2.90E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene09656 | 0.8587 | 6.88E-63 | -1.69E-46 |
| MS.gene052463 | MS.gene09656 | 0.861999 | 6.91E-64 | -1.69E-46 |
| MS.gene052493 | MS.gene09656 | 0.811749 | 5.99E-51 | -1.69E-46 |
| MS.gene052516 | MS.gene09656 | 0.806898 | 6.58E-50 | -1.69E-46 |
| MS.gene052533 | MS.gene09656 | 0.864888 | 8.79E-65 | -1.69E-46 |
| MS.gene052534 | MS.gene09656 | 0.807469 | 4.98E-50 | -1.69E-46 |
| MS.gene052582 | MS.gene09656 | 0.803787 | 2.95E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene09656 | 0.812009 | 5.26E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene09656 | 0.831374 | 1.73E-55 | -1.69E-46 |
| MS.gene052775 | MS.gene09656 | 0.805452 | 1.33E-49 | -1.69E-46 |
| MS.gene052855 | MS.gene09656 | 0.804999 | 1.65E-49 | -1.69E-46 |
| MS.gene052932 | MS.gene09656 | 0.801067 | 1.07E-48 | -1.69E-46 |
| MS.gene053079 | MS.gene09656 | 0.817037 | 4.06E-52 | -1.69E-46 |
| MS.gene053143 | MS.gene09656 | 0.813718 | 2.22E-51 | -1.69E-46 |
| MS.gene054178 | MS.gene09656 | 0.811993 | 5.30E-51 | -1.69E-46 |
| MS.gene054222 | MS.gene09656 | 0.816903 | 4.35E-52 | -1.69E-46 |
| MS.gene05423 | MS.gene09656 | 0.805831 | 1.10E-49 | -1.69E-46 |
| MS.gene054489 | MS.gene09656 | 0.81335 | 2.68E-51 | -1.69E-46 |
| MS.gene05454 | MS.gene09656 | 0.826511 | 2.61E-54 | -1.69E-46 |
| MS.gene054576 | MS.gene09656 | 0.823155 | 1.61E-53 | -1.69E-46 |
| MS.gene05458 | MS.gene09656 | 0.80392 | 2.77E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene09656 | 0.831988 | 1.22E-55 | -1.69E-46 |
| MS.gene054892 | MS.gene09656 | 0.841622 | 4.25E-58 | -1.69E-46 |
| MS.gene054893 | MS.gene09656 | 0.847001 | 1.52E-59 | -1.69E-46 |
| MS.gene055229 | MS.gene09656 | 0.809666 | 1.69E-50 | -1.69E-46 |
| MS.gene055231 | MS.gene09656 | 0.824936 | 6.16E-54 | -1.69E-46 |
| MS.gene055386 | MS.gene09656 | 0.853337 | 2.55E-61 | -1.69E-46 |
| MS.gene05539 | MS.gene09656 | 0.809027 | 2.32E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene09656 | 0.801037 | 1.09E-48 | -1.69E-46 |
| MS.gene055513 | MS.gene09656 | 0.860189 | 2.46E-63 | -1.69E-46 |
| MS.gene05552 | MS.gene09656 | 0.810398 | 1.18E-50 | -1.69E-46 |
| MS.gene055724 | MS.gene09656 | 0.814164 | 1.77E-51 | -1.69E-46 |
| MS.gene055864 | MS.gene09656 | 0.847006 | 1.52E-59 | -1.69E-46 |
| MS.gene056045 | MS.gene09656 | 0.800123 | 1.67E-48 | -1.69E-46 |
| MS.gene056174 | MS.gene09656 | 0.842637 | 2.29E-58 | -1.69E-46 |
| MS.gene056308 | MS.gene09656 | 0.805906 | 1.06E-49 | -1.69E-46 |
| MS.gene056507 | MS.gene09656 | 0.818031 | 2.42E-52 | -1.69E-46 |
| MS.gene056519 | MS.gene09656 | 0.80062 | 1.32E-48 | -1.69E-46 |
| MS.gene056677 | MS.gene09656 | 0.834625 | 2.69E-56 | -1.69E-46 |
| MS.gene056699 | MS.gene09656 | 0.867077 | 1.79E-65 | -1.69E-46 |
| MS.gene056776 | MS.gene09656 | 0.80329 | 3.74E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene09656 | 0.858875 | 6.10E-63 | -1.69E-46 |
| MS.gene056973 | MS.gene09656 | 0.81119 | 7.93E-51 | -1.69E-46 |
| MS.gene057034 | MS.gene09656 | 0.831808 | 1.35E-55 | -1.69E-46 |
| MS.gene057102 | MS.gene09656 | 0.872178 | 3.88E-67 | -1.69E-46 |
| MS.gene058010 | MS.gene09656 | 0.802678 | 5.01E-49 | -1.69E-46 |
| MS.gene058095 | MS.gene09656 | 0.866419 | 2.89E-65 | -1.69E-46 |
| MS.gene058159 | MS.gene09656 | 0.815979 | 7.00E-52 | -1.69E-46 |
| MS.gene058279 | MS.gene09656 | 0.81855 | 1.85E-52 | -1.69E-46 |
| MS.gene058289 | MS.gene09656 | 0.842456 | 2.56E-58 | -1.69E-46 |
| MS.gene058330 | MS.gene09656 | 0.806418 | 8.31E-50 | -1.69E-46 |
| MS.gene058668 | MS.gene09656 | 0.81289 | 3.38E-51 | -1.69E-46 |
| MS.gene05897 | MS.gene09656 | 0.816215 | 6.20E-52 | -1.69E-46 |
| MS.gene059170 | MS.gene09656 | 0.844005 | 9.88E-59 | -1.69E-46 |
| MS.gene05952 | MS.gene09656 | 0.830408 | 2.99E-55 | -1.69E-46 |
| MS.gene059570 | MS.gene09656 | 0.810054 | 1.39E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene09656 | 0.801092 | 1.06E-48 | -1.69E-46 |
| MS.gene059634 | MS.gene09656 | 0.814905 | 1.21E-51 | -1.69E-46 |
| MS.gene059774 | MS.gene09656 | 0.832475 | 9.26E-56 | -1.69E-46 |
| MS.gene059778 | MS.gene09656 | 0.807769 | 4.30E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene09656 | -0.866178 | 3.45E-65 | -1.69E-46 |
| MS.gene059901 | MS.gene09656 | -0.816063 | 6.71E-52 | -1.69E-46 |
| MS.gene059965 | MS.gene09656 | 0.838079 | 3.56E-57 | -1.69E-46 |
| MS.gene060167 | MS.gene09656 | 0.804358 | 2.24E-49 | -1.69E-46 |
| MS.gene060373 | MS.gene09656 | 0.824774 | 6.73E-54 | -1.69E-46 |
| MS.gene060435 | MS.gene09656 | 0.812002 | 5.28E-51 | -1.69E-46 |
| MS.gene060520 | MS.gene09656 | 0.816013 | 6.88E-52 | -1.69E-46 |
| MS.gene060522 | MS.gene09656 | 0.806851 | 6.73E-50 | -1.69E-46 |
| MS.gene060527 | MS.gene09656 | 0.81403 | 1.90E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene09656 | 0.80143 | 9.04E-49 | -1.69E-46 |
| MS.gene060697 | MS.gene09656 | 0.828964 | 6.71E-55 | -1.69E-46 |
| MS.gene060777 | MS.gene09656 | 0.810395 | 1.18E-50 | -1.69E-46 |
| MS.gene060785 | MS.gene09656 | 0.8144 | 1.57E-51 | -1.69E-46 |
| MS.gene060840 | MS.gene09656 | 0.832915 | 7.20E-56 | -1.69E-46 |
| MS.gene060932 | MS.gene09656 | 0.838458 | 2.84E-57 | -1.69E-46 |
| MS.gene060933 | MS.gene09656 | 0.833414 | 5.41E-56 | -1.69E-46 |
| MS.gene060935 | MS.gene09656 | 0.829409 | 5.23E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene09656 | 0.847378 | 1.20E-59 | -1.69E-46 |
| MS.gene061100 | MS.gene09656 | 0.883683 | 3.65E-71 | -1.69E-46 |
| MS.gene061160 | MS.gene09656 | 0.810304 | 1.23E-50 | -1.69E-46 |
| MS.gene061188 | MS.gene09656 | 0.847695 | 9.83E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09656 | MS.gene056431 | PPI |
| MS.gene29199 | MS.gene09656 | PPI |
| MS.gene068109 | MS.gene09656 | PPI |
| MS.gene09656 | MS.gene008864 | PPI |
| MS.gene09656 | MS.gene010105 | PPI |
| MS.gene050771 | MS.gene09656 | PPI |
| MS.gene09656 | MS.gene050768 | PPI |
| MS.gene86178 | MS.gene09656 | PPI |
| MS.gene067937 | MS.gene09656 | PPI |
| MS.gene23142 | MS.gene09656 | PPI |
| MS.gene027687 | MS.gene09656 | PPI |
| MS.gene072572 | MS.gene09656 | PPI |
| MS.gene09656 | MS.gene054375 | PPI |
| MS.gene09656 | MS.gene44324 | PPI |
| MS.gene050001 | MS.gene09656 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09656.t1 | MTR_5g014330 | 100.000 | 438 | 0 | 0 | 1 | 438 | 1 | 438 | 0.0 | 901 |
| MS.gene09656.t1 | MTR_5g014330 | 100.000 | 398 | 0 | 0 | 1 | 398 | 1 | 398 | 0.0 | 817 |
| MS.gene09656.t1 | MTR_8g069565 | 44.091 | 440 | 229 | 7 | 1 | 437 | 1 | 426 | 2.45e-125 | 370 |
| MS.gene09656.t1 | MTR_5g033500 | 43.409 | 440 | 232 | 6 | 1 | 437 | 1 | 426 | 5.41e-125 | 369 |
| MS.gene09656.t1 | MTR_5g033500 | 42.724 | 323 | 169 | 5 | 1 | 321 | 1 | 309 | 7.35e-86 | 267 |
| MS.gene09656.t1 | MTR_3g112190 | 32.230 | 453 | 274 | 9 | 6 | 438 | 3 | 442 | 1.03e-77 | 248 |
| MS.gene09656.t1 | MTR_5g066050 | 32.969 | 458 | 273 | 10 | 6 | 438 | 3 | 451 | 1.24e-74 | 241 |
| MS.gene09656.t1 | MTR_5g066050 | 32.898 | 459 | 271 | 12 | 6 | 438 | 3 | 450 | 7.53e-74 | 238 |
| MS.gene09656.t1 | MTR_7g111870 | 29.315 | 365 | 220 | 11 | 81 | 437 | 76 | 410 | 2.04e-44 | 160 |
| MS.gene09656.t1 | MTR_7g111870 | 31.395 | 258 | 145 | 7 | 81 | 330 | 76 | 309 | 2.08e-36 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09656.t1 | AT5G46630 | 94.292 | 438 | 25 | 0 | 1 | 438 | 1 | 438 | 0.0 | 859 |
| MS.gene09656.t1 | AT5G46630 | 93.947 | 413 | 25 | 0 | 1 | 413 | 1 | 413 | 0.0 | 805 |
| MS.gene09656.t1 | AT1G60780 | 42.500 | 440 | 236 | 7 | 1 | 437 | 1 | 426 | 1.54e-122 | 363 |
| MS.gene09656.t1 | AT1G10730 | 42.500 | 440 | 236 | 7 | 1 | 437 | 1 | 426 | 6.49e-120 | 356 |
| MS.gene09656.t1 | AT4G24550 | 32.898 | 459 | 271 | 8 | 6 | 438 | 4 | 451 | 1.17e-82 | 261 |
| MS.gene09656.t1 | AT4G24550 | 32.316 | 393 | 230 | 7 | 6 | 373 | 4 | 385 | 1.40e-65 | 215 |
| MS.gene09656.t1 | AT4G24550 | 32.461 | 382 | 222 | 7 | 6 | 362 | 4 | 374 | 5.61e-65 | 213 |
| MS.gene09656.t1 | AT1G56590 | 28.255 | 361 | 229 | 8 | 81 | 437 | 80 | 414 | 1.97e-40 | 149 |
Find 86 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACTATTCAAATCATATTT+TGG | 0.157391 | 5.2:-6285482 | MS.gene09656:CDS |
| ACCGATTCAGATGGAGTTTC+AGG | 0.260698 | 5.2:-6279616 | MS.gene09656:intron |
| CTTATGAAGTGCTTTCTATC+TGG | 0.279752 | 5.2:-6282699 | MS.gene09656:CDS |
| GTAACTTGCAACGTCGCATT+TGG | 0.288584 | 5.2:+6283007 | None:intergenic |
| TTAAATCACGCCCTACTAAA+AGG | 0.294099 | 5.2:-6282617 | MS.gene09656:intron |
| GTTGCTTTACAGGGGAAATA+TGG | 0.297064 | 5.2:-6285914 | MS.gene09656:intron |
| AAACCAACCTTGGATGAAAA+AGG | 0.306447 | 5.2:+6283409 | None:intergenic |
| TGTTCGACCAAGTTCCTTGA+TGG | 0.315007 | 5.2:+6280237 | None:intergenic |
| CAGCTATTGATTGTTTAGTT+TGG | 0.318085 | 5.2:-6279982 | MS.gene09656:CDS |
| TTTCAGGTAAAGAGTGTCTT+TGG | 0.322597 | 5.2:-6280106 | MS.gene09656:intron |
| TCGTCAAATTTACACATTGA+TGG | 0.324003 | 5.2:+6282317 | None:intergenic |
| GTCTCTATCGCGACGATGTC+GGG | 0.365747 | 5.2:-6287042 | MS.gene09656:intron |
| AAATGCGACGTTGCAAGTTA+CGG | 0.367377 | 5.2:-6283005 | MS.gene09656:CDS |
| GTTCCCATGTTCACAGCATC+TGG | 0.373702 | 5.2:-6279149 | MS.gene09656:CDS |
| ATCAGTTCAAATTCACCATC+TGG | 0.398480 | 5.2:+6282259 | None:intergenic |
| CTCATTTACGAGCTTCTAGA+TGG | 0.399037 | 5.2:-6285419 | MS.gene09656:intron |
| TTCAAACCCAACTTCAAATC+AGG | 0.404289 | 5.2:+6282672 | None:intergenic |
| AATGCGACGTTGCAAGTTAC+GGG | 0.424532 | 5.2:-6283004 | MS.gene09656:CDS |
| TGCAGGATAAGAAAATTTCC+TGG | 0.425356 | 5.2:-6279714 | MS.gene09656:intron |
| GATGGTTGGCAATACTTTGA+AGG | 0.426750 | 5.2:+6280255 | None:intergenic |
| TCAATTTCTGCGCTCAAAGT+TGG | 0.427617 | 5.2:+6279681 | None:intergenic |
| TGCAACGTCGCATTTGGAAC+AGG | 0.439125 | 5.2:+6283013 | None:intergenic |
| TTGGGTTTGAATGATAAGAT+TGG | 0.441817 | 5.2:-6282660 | MS.gene09656:CDS |
| GGAATGCCTGATTTGAAGTT+GGG | 0.447084 | 5.2:-6282678 | MS.gene09656:CDS |
| TTTGCAGAAATCATGGACTT+TGG | 0.450042 | 5.2:-6283496 | MS.gene09656:intron |
| ACATGTATTTGCAGAAATCA+TGG | 0.450910 | 5.2:-6283503 | MS.gene09656:intron |
| TCACACTCTCCACAATATCT+AGG | 0.454091 | 5.2:+6282852 | None:intergenic |
| AAGCTTTATATTACTCAAGA+AGG | 0.456687 | 5.2:-6283442 | MS.gene09656:CDS |
| CGCTTTCAAGTTCGTTGTAG+AGG | 0.457965 | 5.2:-6285746 | MS.gene09656:intron |
| AAGCAGGATCATACGAGATT+AGG | 0.459777 | 5.2:-6278965 | MS.gene09656:CDS |
| TTTGCTGTTTGTTTCGGCAC+AGG | 0.461516 | 5.2:+6280046 | None:intergenic |
| CTGAAGGTGTGGGAAAAGAG+TGG | 0.468687 | 5.2:-6279023 | MS.gene09656:intron |
| CGATGACTGAAAAGAAATCA+TGG | 0.469490 | 5.2:-6279647 | MS.gene09656:CDS |
| CGTCTCTATCGCGACGATGT+CGG | 0.469885 | 5.2:-6287043 | MS.gene09656:CDS |
| ACCTGAAACTCCATCTGAAT+CGG | 0.470886 | 5.2:+6279615 | None:intergenic |
| TGGAATGCCTGATTTGAAGT+TGG | 0.486730 | 5.2:-6282679 | MS.gene09656:CDS |
| ACGGATGGAAGTAAATGTTA+AGG | 0.488849 | 5.2:-6280215 | MS.gene09656:intron |
| CATCCACCAATCTGCTTCAC+AGG | 0.489532 | 5.2:+6285841 | None:intergenic |
| AATCTTCTTATGTCGTCAAA+AGG | 0.490176 | 5.2:-6282830 | MS.gene09656:intron |
| TGGGTACAACACTGTTGAAT+GGG | 0.491741 | 5.2:-6279003 | MS.gene09656:CDS |
| GCTGTTGGTTGGCGGAGAGA+AGG | 0.495289 | 5.2:-6282980 | MS.gene09656:CDS |
| CGACCAAGTTCCTTGATGGT+TGG | 0.502376 | 5.2:+6280241 | None:intergenic |
| GTGGGTACAACACTGTTGAA+TGG | 0.504729 | 5.2:-6279004 | MS.gene09656:CDS |
| ATATAAAGCTTTAAGATCTC+CGG | 0.510605 | 5.2:+6283454 | None:intergenic |
| TAAACCAGATGCTGTGAACA+TGG | 0.514088 | 5.2:+6279145 | None:intergenic |
| TTGCCAACCATCAAGGAACT+TGG | 0.515329 | 5.2:-6280244 | MS.gene09656:CDS |
| ACCAATCTGCTTCACAGGAC+AGG | 0.518339 | 5.2:+6285846 | None:intergenic |
| GTTCTGCGCTGTGATGTAAC+GGG | 0.519953 | 5.2:-6282729 | MS.gene09656:CDS |
| TTACGGGTGCTGTTGGTTGG+CGG | 0.523294 | 5.2:-6282988 | MS.gene09656:CDS |
| CAAAGTATTGCCAACCATCA+AGG | 0.525550 | 5.2:-6280251 | MS.gene09656:CDS |
| GTGCAAAGATGTTTGCACTA+GGG | 0.528491 | 5.2:-6280084 | MS.gene09656:CDS |
| AAGTTACGGGTGCTGTTGGT+TGG | 0.531316 | 5.2:-6282991 | MS.gene09656:CDS |
| TGTTCTGCGCTGTGATGTAA+CGG | 0.532251 | 5.2:-6282730 | MS.gene09656:CDS |
| GCAGGATAAGAAAATTTCCT+GGG | 0.532433 | 5.2:-6279713 | MS.gene09656:intron |
| ATGGTTGGCAATACTTTGAA+GGG | 0.536477 | 5.2:+6280256 | None:intergenic |
| ACCTGTCCTGTGAAGCAGAT+TGG | 0.537523 | 5.2:-6285847 | MS.gene09656:CDS |
| ACAGGTGTTCCTAGATATTG+TGG | 0.545898 | 5.2:-6282861 | MS.gene09656:intron |
| GGTGCAAAGATGTTTGCACT+AGG | 0.547993 | 5.2:-6280085 | MS.gene09656:CDS |
| AAAGTTGGCTCAGTTTGCCC+AGG | 0.550589 | 5.2:+6279696 | None:intergenic |
| ACGAGTTTCACAGTCACATC+CGG | 0.553418 | 5.2:-6280022 | MS.gene09656:CDS |
| ATAATGCAAACGAAAGAACT+TGG | 0.553697 | 5.2:-6285871 | MS.gene09656:CDS |
| TGCAAAGATGTTTGCACTAG+GGG | 0.556537 | 5.2:-6280083 | MS.gene09656:CDS |
| ATCAGGTATCGTATCACTGA+GGG | 0.564329 | 5.2:-6280289 | MS.gene09656:intron |
| TAAGTTGTGACTCTTTCTCA+AGG | 0.567568 | 5.2:+6282637 | None:intergenic |
| TTATCCACAAAATCTTTCAC+CGG | 0.572212 | 5.2:-6283473 | MS.gene09656:CDS |
| AGCGCAAGCTACATTAGCAT+TGG | 0.574062 | 5.2:+6285765 | None:intergenic |
| TAAACAGCGGAAGCAGCCAC+CGG | 0.577176 | 5.2:+6287100 | None:intergenic |
| TTGCAAGTTACGGGTGCTGT+TGG | 0.580431 | 5.2:-6282995 | MS.gene09656:CDS |
| GACTAGACCACCGATTCAGA+TGG | 0.586855 | 5.2:-6279625 | MS.gene09656:CDS |
| GTTCGCTACATCACAAAAGC+AGG | 0.590440 | 5.2:-6278981 | MS.gene09656:CDS |
| TGTCCTGTGAAGCAGATTGG+TGG | 0.590779 | 5.2:-6285844 | MS.gene09656:CDS |
| GGAACTTGGTCGAACACGGA+TGG | 0.592221 | 5.2:-6280230 | MS.gene09656:CDS |
| TGAAGGTGTGGGAAAAGAGT+GGG | 0.594343 | 5.2:-6279022 | MS.gene09656:intron |
| TCAAGGAACTTGGTCGAACA+CGG | 0.609772 | 5.2:-6280234 | MS.gene09656:CDS |
| AAATTTGACGAGGTTCAACT+CGG | 0.616156 | 5.2:-6282305 | MS.gene09656:CDS |
| TGAAACTCCATCTGAATCGG+TGG | 0.627007 | 5.2:+6279618 | None:intergenic |
| GTTTACTTCTTGAACCTCCG+TGG | 0.631442 | 5.2:-6287082 | MS.gene09656:CDS |
| ATCAATGTGTAAATTTGACG+AGG | 0.649503 | 5.2:-6282315 | MS.gene09656:CDS |
| CACTGGATCGGAGATGCCGG+TGG | 0.655709 | 5.2:-6287116 | None:intergenic |
| AAACCAGATGCTGTGAACAT+GGG | 0.662215 | 5.2:+6279146 | None:intergenic |
| GATTGATGAGAACGTCACCA+CGG | 0.673884 | 5.2:+6287065 | None:intergenic |
| AGTTCAAATTCACCATCTGG+AGG | 0.689739 | 5.2:+6282262 | None:intergenic |
| TTCTGCGCTGTGATGTAACG+GGG | 0.698309 | 5.2:-6282728 | MS.gene09656:CDS |
| TATCAGGTATCGTATCACTG+AGG | 0.719317 | 5.2:-6280290 | MS.gene09656:intron |
| TGATGAGAACGTCACCACGG+AGG | 0.731384 | 5.2:+6287068 | None:intergenic |
| GAGGTTCAAGAAGTAAACAG+CGG | 0.750495 | 5.2:+6287087 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 6278959 | 6287125 | 6278959 | ID=MS.gene09656 |
| chr5.2 | mRNA | 6278959 | 6287125 | 6278959 | ID=MS.gene09656.t1;Parent=MS.gene09656 |
| chr5.2 | exon | 6287043 | 6287125 | 6287043 | ID=MS.gene09656.t1.exon1;Parent=MS.gene09656.t1 |
| chr5.2 | CDS | 6287043 | 6287125 | 6287043 | ID=cds.MS.gene09656.t1;Parent=MS.gene09656.t1 |
| chr5.2 | exon | 6285747 | 6285924 | 6285747 | ID=MS.gene09656.t1.exon2;Parent=MS.gene09656.t1 |
| chr5.2 | CDS | 6285747 | 6285924 | 6285747 | ID=cds.MS.gene09656.t1;Parent=MS.gene09656.t1 |
| chr5.2 | exon | 6285420 | 6285510 | 6285420 | ID=MS.gene09656.t1.exon3;Parent=MS.gene09656.t1 |
| chr5.2 | CDS | 6285420 | 6285510 | 6285420 | ID=cds.MS.gene09656.t1;Parent=MS.gene09656.t1 |
| chr5.2 | exon | 6283417 | 6283511 | 6283417 | ID=MS.gene09656.t1.exon4;Parent=MS.gene09656.t1 |
| chr5.2 | CDS | 6283417 | 6283511 | 6283417 | ID=cds.MS.gene09656.t1;Parent=MS.gene09656.t1 |
| chr5.2 | exon | 6282958 | 6283047 | 6282958 | ID=MS.gene09656.t1.exon5;Parent=MS.gene09656.t1 |
| chr5.2 | CDS | 6282958 | 6283047 | 6282958 | ID=cds.MS.gene09656.t1;Parent=MS.gene09656.t1 |
| chr5.2 | exon | 6282831 | 6282879 | 6282831 | ID=MS.gene09656.t1.exon6;Parent=MS.gene09656.t1 |
| chr5.2 | CDS | 6282831 | 6282879 | 6282831 | ID=cds.MS.gene09656.t1;Parent=MS.gene09656.t1 |
| chr5.2 | exon | 6282618 | 6282756 | 6282618 | ID=MS.gene09656.t1.exon7;Parent=MS.gene09656.t1 |
| chr5.2 | CDS | 6282618 | 6282756 | 6282618 | ID=cds.MS.gene09656.t1;Parent=MS.gene09656.t1 |
| chr5.2 | exon | 6282256 | 6282372 | 6282256 | ID=MS.gene09656.t1.exon8;Parent=MS.gene09656.t1 |
| chr5.2 | CDS | 6282256 | 6282372 | 6282256 | ID=cds.MS.gene09656.t1;Parent=MS.gene09656.t1 |
| chr5.2 | exon | 6280216 | 6280306 | 6280216 | ID=MS.gene09656.t1.exon9;Parent=MS.gene09656.t1 |
| chr5.2 | CDS | 6280216 | 6280306 | 6280216 | ID=cds.MS.gene09656.t1;Parent=MS.gene09656.t1 |
| chr5.2 | exon | 6279980 | 6280122 | 6279980 | ID=MS.gene09656.t1.exon10;Parent=MS.gene09656.t1 |
| chr5.2 | CDS | 6279980 | 6280122 | 6279980 | ID=cds.MS.gene09656.t1;Parent=MS.gene09656.t1 |
| chr5.2 | exon | 6279617 | 6279731 | 6279617 | ID=MS.gene09656.t1.exon11;Parent=MS.gene09656.t1 |
| chr5.2 | CDS | 6279617 | 6279731 | 6279617 | ID=cds.MS.gene09656.t1;Parent=MS.gene09656.t1 |
| chr5.2 | exon | 6279127 | 6279171 | 6279127 | ID=MS.gene09656.t1.exon12;Parent=MS.gene09656.t1 |
| chr5.2 | CDS | 6279127 | 6279171 | 6279127 | ID=cds.MS.gene09656.t1;Parent=MS.gene09656.t1 |
| chr5.2 | exon | 6278959 | 6279039 | 6278959 | ID=MS.gene09656.t1.exon13;Parent=MS.gene09656.t1 |
| chr5.2 | CDS | 6278959 | 6279039 | 6278959 | ID=cds.MS.gene09656.t1;Parent=MS.gene09656.t1 |
| Gene Sequence |
| Protein sequence |
