AlfalfaGEDB | MS.gene23953

M. sativa cultivar XinJiangDaYe / MS.gene23953

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23953.t1	XP_003597891.1	99.1	106	1	0	1	106	19	124	1.10E-54	222.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23953.t1	C0HLF1	32.4	105	70	1	1	104	20	124	1.9e-10	66.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23953.t1	Q2HUA7	99.1	106	1	0	1	106	19	124	8.0e-55	222.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene23953	0.802131	6.49E-49	-1.69E-46
MS.gene049821	MS.gene23953	0.811379	7.21E-51	-1.69E-46
MS.gene050780	MS.gene23953	0.804894	1.73E-49	-1.69E-46
MS.gene050807	MS.gene23953	0.804539	2.06E-49	-1.69E-46
MS.gene051243	MS.gene23953	0.801882	7.30E-49	-1.69E-46
MS.gene051247	MS.gene23953	0.811358	7.29E-51	-1.69E-46
MS.gene051328	MS.gene23953	0.803382	3.58E-49	-1.69E-46
MS.gene051757	MS.gene23953	0.810467	1.14E-50	-1.69E-46
MS.gene052302	MS.gene23953	0.804087	2.56E-49	-1.69E-46
MS.gene052376	MS.gene23953	0.812326	4.49E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 0 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGCAATTTCAAACCCT+TGG	-	15455:11917-11936	MS.gene23952:intergenic	30.0%
AACTTTATCTGATTCTGAAC+TGG	+	15455:10264-10283	MS.gene23953:intron	30.0%
AATATAATCAACACATCAGG+AGG	-	15455:11355-11374	MS.gene23953:intergenic	30.0%
AATTCATTGCTAAACGAGAA+TGG	-	15455:11608-11627	MS.gene23953:intergenic	30.0%
AATTCTATTTGCAAGGTTAG+TGG	+	15455:10313-10332	MS.gene23953:intron	30.0%
AGAGAAGCTTGCAAAAATTA+AGG	-	15455:11564-11583	MS.gene23953:intergenic	30.0%
ATTAAGGCAATAGATCGAAA+AGG	-	15455:11548-11567	MS.gene23953:intergenic	30.0%
ATTCTATTTGCAAGGTTAGT+GGG	+	15455:10314-10333	MS.gene23953:intron	30.0%
GATAGAATACTACAGAACTT+CGG	+	15455:11092-11111	MS.gene23953:intron	30.0%
GTATGAATGTGTATCTTACA+TGG	+	15455:10212-10231	MS.gene23953:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
15455	gene	10054	12149	10054	ID=MS.gene23953
15455	mRNA	10054	12149	10054	ID=MS.gene23953.t1;Parent=MS.gene23953
15455	exon	10054	10167	10054	ID=MS.gene23953.t1.exon1;Parent=MS.gene23953.t1
15455	CDS	10054	10167	10054	ID=cds.MS.gene23953.t1;Parent=MS.gene23953.t1
15455	exon	10749	10828	10749	ID=MS.gene23953.t1.exon2;Parent=MS.gene23953.t1
15455	CDS	10749	10828	10749	ID=cds.MS.gene23953.t1;Parent=MS.gene23953.t1
15455	exon	12025	12149	12025	ID=MS.gene23953.t1.exon3;Parent=MS.gene23953.t1
15455	CDS	12025	12149	12025	ID=cds.MS.gene23953.t1;Parent=MS.gene23953.t1

Gene Sequence

>MS.gene23953

TTTTCATGGAGTTCCTGCAGAGGAGCGCCTACACTGGCGTTCTTTCTTGGTCAAACTAGGAGCTGATAATCTTAAGGGTGTAAAAAATGAAGAACTCCTAGTTGCTTGCCACAAGTAAGTATACTGCTCTCGCCTCTCTCAAGTCATGTGTACGTGATGTATGAATGTGTATCTTACATGGATAAATTACCTTATCTAGGTGAGCACTTTAACTTTATCTGATTCTGAACTGGTCCAAGGACTAAATTTTAGTTATTAGAATTCTATTTGCAAGGTTAGTGGGCCGTTGAAATCTGTTTATATGAATGATTATCGATTCAGTGCTATGATAGTGATAGACTTTGCACAGTTTGCATTTTGAATTTTTGTGATGCAAGTAGATGAGAACAAAGTGAATAACATTAGTTGATTACTAAGATATTTCAAATAGTATTATCATTAATGAAAAATTTGGAAAAGAGTTGTGGAAATGGAAGCTAAAAACTGACATGTGAACTTGTCCCATCAAAAATCAGTAACAGATACAAGATTGTGGAATAAAAGAAAAACTTTTTTGCTTCACTGCTAAATGCTAATTATTGTTCATTAATATGCCTTCATTTTTGAAAATTATGTCTCATTCATATGTGATGATTCAGTTTCCCTTTTAGTAAACAGTGATTTATTATTTTACTTCTACTTCTTATCTTTATCAGGTCAGTCTATATTGTATACACAGTACTTGGAGATGTCAGTATATACGTTGTGGGGAAGGACGCGTACGATGAACTTGCTTGTATGTATTCTATGAACCAATCTTTTTTATTTGATGACAGTAAATGGTAAAATAAAAGCAAACAAATTACTCATCTCAGTTGTTGATGTTTTAATATAAAATTGCACAATATTTTGTACTTGCTGATAGTAAAATAAAACATATAAATCAATCATCTAAGTTGTTGATGCTTGAAAGTTGATTTGCTTGCTATTTTTAGATTGAATTTTGATAACAACCCTGTATCCTATTAGAAATAAATAGGGACAAACCCCAATTACAAAGATAGAATACTACAGAACTTCGGAGTTTTCATCTGCTTATACCCAAAGTCCCCAATTCTCTCTTAAATAACAAGATATCACTCCCTCTCGACCACTCTTGTTATTTATAGGCAACATCTTTATTTCTTCTATTTATCTCAACCCAACTACCTAACCTTGTTACCAACAGCCCTTTCATCAACAATGTAGGTTCTACATTATTTGCGTGTCCTTGTCTGCAGTTCTGATTATTGGATCTCATCTTTTAGACATCAATTCTACCTCCTGATGTGTTGATTATATTTTGTTGGCTAATCAACCAAGTTTGATTCTTCTCTGTTATTGTTGTGCCTAGCACCTGTGGCTTTGCTTCTCCTCATGCTGTCAATTGGGTTCCCTAGAATCTTGTCCATCCTGCACAATATTTCCCATACCATAAAACTAGCGTCCATCCACAACACTGTTGCTCTGTTTCCTTTTCGATCTATTGCCTTAATTTTTGCAAGCTTCTCTTTGTAGCATCCCCTCAATCCACCATTCTCGTTTAGCAATGAATTGCTCCCTAGAAAAGATGATAAACTAGCTATTAAAGGATACTCTTGCGGTGTTGAAAATATGGCATTGCATCTTAAATAATGTAGTTAGAAAAGCTAGCTATCAGGTGAACTAGTAGGGGTATATCTTAGAATCTAACTAAACTTAGCAGACAATTTTGTCTGACTTTCCAAGAATAGTATACATATTTAATCAAAAAACAAGGTTGTTCGTTCATATTGTGATTTGATGGTATCAACATTCATAACTATGCCAATTGCCGAGTGACTCAAGCATATTGTTATTTCACCAAGGGTTTGAAATTGCAATTTGGAAAAACCTATATGTTCGTAAGCTGTCAAGAACTTTCATAATTTTACATTGATAGTACTAATTTACAAATGTTTTGTTTTTCTCCAGTGTCGGAGGTTATCTTTACAATAACCTCAGCTGTAAAGGATGTATGTGGGAAGCCCCCAACTGAGCGCCGTTTCCTTGATAAGTATGGAAGAATTTGCTTGTGTTTGGATGAAATTGTATGGAAG

Protein sequence

>MS.gene23953.t1

FSWSSCRGAPTLAFFLGQTRSUUSUGCKKURTPSCLPQVSLYCIHSTWRCQYIRCGEGRVRUTCFVGGYLYNNLSCKGCMWEAPNUAPFPUUVWKNLLVFGUNCME