AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24546

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24546.t1 MTR_1g016490 97.175 531 8 1 1 531 1 524 0.0 1061
MS.gene24546.t1 MTR_4g051532 35.739 291 157 7 250 523 217 494 9.12e-48 177
MS.gene24546.t1 MTR_3g112300 38.462 260 150 5 247 500 159 414 2.17e-44 164
MS.gene24546.t1 MTR_3g112300 38.462 260 150 5 247 500 159 414 4.92e-44 164
MS.gene24546.t1 MTR_1g023050 37.548 261 144 5 252 500 172 425 1.03e-43 164
MS.gene24546.t1 MTR_7g106320 43.005 193 96 4 318 500 239 427 6.53e-43 162
MS.gene24546.t1 MTR_8g078480 38.739 222 120 5 306 517 447 662 1.30e-41 160
MS.gene24546.t1 MTR_1g057790 35.915 284 152 5 251 517 162 432 3.86e-41 157
MS.gene24546.t1 MTR_3g112290 36.842 266 146 7 247 500 162 417 8.97e-41 153
MS.gene24546.t1 MTR_5g018860 38.739 222 117 6 306 518 394 605 3.86e-40 155
MS.gene24546.t1 MTR_8g098815 41.899 179 95 4 325 494 254 432 7.48e-39 150
MS.gene24546.t1 MTR_4g019450 31.541 279 167 7 247 522 193 450 5.80e-37 144
MS.gene24546.t1 MTR_7g065050 37.624 202 117 5 329 525 200 397 2.27e-36 142
MS.gene24546.t1 MTR_2g095050 36.923 195 105 3 322 498 312 506 1.33e-33 135
MS.gene24546.t1 MTR_3g112300 34.874 238 145 5 247 478 159 392 1.93e-29 120
MS.gene24546.t1 MTR_3g112300 31.797 217 138 5 247 457 159 371 1.51e-19 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24546.t1 AT4G32980 58.228 316 110 6 191 505 152 446 2.99e-110 337
MS.gene24546.t1 AT4G32980 58.228 316 110 6 191 505 152 446 2.99e-110 337
MS.gene24546.t1 AT2G16400 36.918 279 149 7 247 517 111 370 2.20e-43 161
MS.gene24546.t1 AT2G27220 41.622 185 82 5 324 500 131 297 5.09e-42 156
MS.gene24546.t1 AT2G27220 41.622 185 82 5 324 500 131 297 5.09e-42 156
MS.gene24546.t1 AT1G19700 34.799 273 145 7 247 500 162 420 6.89e-42 158
MS.gene24546.t1 AT1G19700 34.799 273 145 7 247 500 162 420 6.89e-42 158
MS.gene24546.t1 AT1G19700 34.799 273 145 7 247 500 162 420 6.89e-42 158
MS.gene24546.t1 AT1G19700 34.799 273 145 7 247 500 162 420 6.89e-42 158
MS.gene24546.t1 AT1G19700 34.799 273 145 7 247 500 162 420 6.89e-42 158
MS.gene24546.t1 AT4G34610 32.873 362 199 12 149 500 56 383 1.19e-41 157
MS.gene24546.t1 AT4G34610 32.873 362 199 12 149 500 56 383 1.19e-41 157
MS.gene24546.t1 AT4G34610 32.873 362 199 12 149 500 56 383 1.19e-41 157
MS.gene24546.t1 AT4G34610 32.873 362 199 12 149 500 56 383 1.19e-41 157
MS.gene24546.t1 AT1G75410 35.632 261 152 6 247 500 164 415 2.42e-41 156
MS.gene24546.t1 AT1G75410 35.632 261 152 6 247 500 164 415 2.42e-41 156
MS.gene24546.t1 AT2G27220 42.941 170 71 5 339 500 164 315 1.74e-38 147
MS.gene24546.t1 AT1G75430 40.314 191 99 3 323 500 83 271 4.88e-38 141
MS.gene24546.t1 AT4G36870 36.538 208 114 4 305 500 366 567 2.52e-37 147
MS.gene24546.t1 AT4G36870 36.538 208 114 4 305 500 366 567 2.52e-37 147
MS.gene24546.t1 AT2G23760 37.255 204 110 4 307 498 294 491 4.73e-36 142
MS.gene24546.t1 AT2G23760 37.255 204 110 4 307 498 294 491 4.73e-36 142
MS.gene24546.t1 AT2G23760 37.255 204 110 4 307 498 294 491 4.73e-36 142
MS.gene24546.t1 AT5G41410 39.899 198 105 5 319 503 267 463 2.32e-35 140
MS.gene24546.t1 AT2G27990 40.462 173 99 3 328 499 323 492 1.66e-34 137
MS.gene24546.t1 AT2G35940 29.064 406 239 10 126 492 51 446 6.54e-34 136
MS.gene24546.t1 AT2G35940 29.064 406 239 10 126 492 51 446 6.54e-34 136
MS.gene24546.t1 AT2G35940 29.064 406 239 10 126 492 51 446 6.54e-34 136
MS.gene24546.t1 AT5G02030 36.813 182 100 3 332 498 234 415 1.13e-29 123
MS.gene24546.t1 AT2G23760 29.688 256 110 5 307 498 294 543 1.10e-27 117
MS.gene24546.t1 AT1G75410 30.962 239 149 6 247 478 164 393 9.46e-26 109
MS.gene24546.t1 AT4G36870 31.551 187 110 4 305 479 366 546 9.89e-23 102
MS.gene24546.t1 AT4G36870 30.811 185 110 4 305 477 366 544 1.08e-21 99.0
MS.gene24546.t1 AT1G75430 31.081 148 87 3 323 457 83 228 1.51e-13 71.6
MS.gene24546.t1 AT2G27990 32.824 131 84 3 328 457 323 450 1.08e-12 70.5

Find 90 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATACATATTCAATAAT+TGG 0.188620 1.2:-6029912 MS.gene24546:CDS
AATGGAATTCCAATACTTTC+TGG 0.223215 1.2:-6030117 MS.gene24546:CDS
ATCTTTCTGGCAAGCCCCTT+TGG 0.227378 1.2:+6028364 None:intergenic
AACCAAAACAACATCATAAA+TGG 0.230798 1.2:-6030135 MS.gene24546:CDS
ATGGAACTTTCTATGAGTTT+AGG 0.232674 1.2:-6029559 MS.gene24546:CDS
TCTTTCTGGCAAGCCCCTTT+GGG 0.243439 1.2:+6028365 None:intergenic
AAATGCTTCTCTGCATCTTT+AGG 0.274049 1.2:+6028057 None:intergenic
TCTTGATGAGATAAACTATT+CGG 0.288114 1.2:-6029434 MS.gene24546:CDS
TTCCATTTATGATGTTGTTT+TGG 0.288436 1.2:+6030133 None:intergenic
TGGAACTTTCTATGAGTTTA+GGG 0.292728 1.2:-6029558 MS.gene24546:CDS
AACGGTTTCTCGACTATATA+AGG 0.297571 1.2:-6028544 MS.gene24546:CDS
CTGTTTCCGTTCTACGTGAT+TGG 0.305984 1.2:-6028341 MS.gene24546:CDS
AACCCCTTGTGTGCAACTTT+TGG 0.320504 1.2:-6029871 MS.gene24546:CDS
TATTCGGGTTCTGGTGTTAG+AGG 0.338538 1.2:-6029418 MS.gene24546:CDS
GAGATAAACTATTCGGGTTC+TGG 0.339602 1.2:-6029427 MS.gene24546:CDS
ACAAGCCTCATGTAGTAGTA+TGG 0.375487 1.2:-6029578 MS.gene24546:CDS
GAATGGAACAAGATCGGGTT+TGG 0.377735 1.2:-6029602 MS.gene24546:CDS
TTTGATGATTGCCATCCATT+TGG 0.383458 1.2:+6029754 None:intergenic
AAGATACCTTGCTGTAATTC+AGG 0.388861 1.2:-6029494 MS.gene24546:CDS
GGTTTATAAATGCGCGTGTT+CGG 0.404462 1.2:-6027668 MS.gene24546:CDS
AAGTTCATTGCTACAATTTG+AGG 0.409458 1.2:+6029699 None:intergenic
CTTGATGAGATAAACTATTC+GGG 0.413238 1.2:-6029433 MS.gene24546:CDS
AGAACGGAAACAGATCTTTC+TGG 0.415143 1.2:+6028351 None:intergenic
TAAATGCGCGTGTTCGGCTA+TGG 0.423300 1.2:-6027662 MS.gene24546:CDS
TTCATTCATTCAAAAGCAAT+GGG 0.425095 1.2:-6028427 MS.gene24546:CDS
TATCTTGATCCTAATATTGC+CGG 0.425897 1.2:+6029511 None:intergenic
TGCCAATTATTGAATATGTA+TGG 0.427184 1.2:+6029910 None:intergenic
GCATACATTTCCTCAATCAA+TGG 0.431572 1.2:+6027636 None:intergenic
AAATGTTTAATATGAATTGA+AGG 0.435021 1.2:-6027533 None:intergenic
CTTGCAACATCACCAACTTC+AGG 0.442716 1.2:-6029667 MS.gene24546:CDS
TAGCAAACATATTCTTTCCA+TGG 0.443732 1.2:-6028505 MS.gene24546:CDS
GGGCTCTTCAACAGTTGAAA+AGG 0.453231 1.2:-6028407 MS.gene24546:CDS
CAGTCAATATAGTCAATGTT+TGG 0.454449 1.2:-6028646 MS.gene24546:CDS
TTATTAACAATGAGATTTGA+GGG 0.454533 1.2:+6029991 None:intergenic
TGCACACTTTGCTGTCAAAA+CGG 0.454758 1.2:-6028562 MS.gene24546:CDS
TGAAAAGGAAAGATCAGTTA+TGG 0.458634 1.2:-6028392 MS.gene24546:CDS
GTTATTAACAATGAGATTTG+AGG 0.462088 1.2:+6029990 None:intergenic
CTTCATTCATTCAAAAGCAA+TGG 0.463764 1.2:-6028428 MS.gene24546:CDS
TGTTCTCCACCAGAAAGTAT+TGG 0.466176 1.2:+6030108 None:intergenic
GCAAAGTGTGCATGTATTTG+TGG 0.466187 1.2:+6028573 None:intergenic
AGCATGAATGGAACAAGATC+GGG 0.483225 1.2:-6029607 MS.gene24546:CDS
AAAGCTCAAGAGAGTAATGT+TGG 0.486264 1.2:-6029817 MS.gene24546:CDS
ATTTATTCCTATCCTTCGCT+TGG 0.489525 1.2:+6029363 None:intergenic
TTCATGGTCAGAAGAGGATA+AGG 0.491594 1.2:-6028466 MS.gene24546:CDS
AGCAAACATATTCTTTCCAT+GGG 0.494717 1.2:-6028504 MS.gene24546:CDS
ACTGTTAAAATTTGATCCCA+TGG 0.497477 1.2:+6028488 None:intergenic
GACTTAACTCATAGCATGAA+TGG 0.499550 1.2:-6029619 MS.gene24546:CDS
ATGAGAGCAGTGAAAGAAGC+AGG 0.499804 1.2:-6027572 MS.gene24546:CDS
GGTTCTGGTGTTAGAGGCCG+AGG 0.503924 1.2:-6029412 MS.gene24546:CDS
TGGTTGTGTAGGTATCAAAC+TGG 0.504145 1.2:-6027689 MS.gene24546:intron
AAGTGGGTTGACTAGAAGTC+AGG 0.504398 1.2:-6028022 MS.gene24546:intron
AACAAATGAATTATCAGCTA+TGG 0.505083 1.2:+6030047 None:intergenic
TCTTGAAGACCAATTCTAGC+AGG 0.505334 1.2:+6029952 None:intergenic
AGAAAAGCTTGTCGAAATGA+AGG 0.508701 1.2:-6027600 MS.gene24546:CDS
ATCAGTTATGGAGGCCCCAA+AGG 0.509828 1.2:-6028380 MS.gene24546:CDS
CTTTCTGGCAAGCCCCTTTG+GGG 0.514861 1.2:+6028366 None:intergenic
TCAGTTATGGAGGCCCCAAA+GGG 0.515348 1.2:-6028379 MS.gene24546:CDS
TCAGCATAAGCTTCTGACAT+AGG 0.527852 1.2:+6029328 None:intergenic
ACAAAGTAGATTTATTTCCT+CGG 0.527965 1.2:+6029395 None:intergenic
TCATGTCATATTCGCCGATA+GGG 0.529853 1.2:-6029786 MS.gene24546:CDS
ATAGGGAACATCGATCCAAA+TGG 0.530007 1.2:-6029769 MS.gene24546:CDS
TAGCATGAATGGAACAAGAT+CGG 0.530199 1.2:-6029608 MS.gene24546:CDS
GGTCAATGCTCAGAGATTAG+TGG 0.536668 1.2:-6029646 MS.gene24546:CDS
ATGCTGATTCTTCATTGCAA+AGG 0.542693 1.2:-6029312 MS.gene24546:CDS
GCTATGGAAACCATTGATTG+AGG 0.555071 1.2:-6027646 MS.gene24546:CDS
ATCACCAAAAGTTGCACACA+AGG 0.561105 1.2:+6029867 None:intergenic
TCTGAGCATTGACCTGAAGT+TGG 0.571861 1.2:+6029655 None:intergenic
CACCAAAAGTTGCACACAAG+GGG 0.572833 1.2:+6029869 None:intergenic
TAACAGTTCATGGTCAGAAG+AGG 0.576067 1.2:-6028472 MS.gene24546:CDS
GGAATTCCAATACTTTCTGG+TGG 0.576914 1.2:-6030114 MS.gene24546:CDS
ACTCTTGATGCTTCTACAGA+TGG 0.577737 1.2:-6029263 MS.gene24546:intron
ACTGCTCAAATGAACATGGC+TGG 0.584941 1.2:-6030237 MS.gene24546:CDS
AACACAACCAAGCGAAGGAT+AGG 0.588145 1.2:-6029370 MS.gene24546:CDS
TTGTTACATCACAACATGGA+AGG 0.589701 1.2:-6030029 MS.gene24546:CDS
AATGAATAGCAATGAATGAG+TGG 0.594918 1.2:+6030168 None:intergenic
AAACATCCAATCACGTAGAA+CGG 0.600137 1.2:+6028335 None:intergenic
TTCATGTCATATTCGCCGAT+AGG 0.602007 1.2:-6029787 MS.gene24546:CDS
ACAACATGGAAGGACTATTG+TGG 0.614360 1.2:-6030019 MS.gene24546:CDS
TTTGGATCGATGTTCCCTAT+CGG 0.616890 1.2:+6029772 None:intergenic
TAGATAATACTTACGGATGG+AGG 0.617974 1.2:+6028304 None:intergenic
TATATAAGGACTTGAGAGAG+AGG 0.620065 1.2:-6028530 MS.gene24546:CDS
AAGTTCCATACTACTACATG+AGG 0.620943 1.2:+6029573 None:intergenic
GGAACATCGATCCAAATGGA+TGG 0.633164 1.2:-6029765 MS.gene24546:CDS
TCACCAAAAGTTGCACACAA+GGG 0.650888 1.2:+6029868 None:intergenic
TCATTTGTTACATCACAACA+TGG 0.664816 1.2:-6030033 MS.gene24546:CDS
AAAGGAAAGATCAGTTATGG+AGG 0.667219 1.2:-6028389 MS.gene24546:CDS
TGTCGAACACAACCAAGCGA+AGG 0.672572 1.2:-6029375 MS.gene24546:CDS
GTACACTGCTCAAATGAACA+TGG 0.673477 1.2:-6030241 MS.gene24546:CDS
GTATTTCCTGAATTACAGCA+AGG 0.683112 1.2:+6029488 None:intergenic
CAGTTATGGAGGCCCCAAAG+GGG 0.731077 1.2:-6028378 MS.gene24546:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATCTTATTATTATAGATAA+AGG + chr1.2:6029665-6029684 None:intergenic 15.0%
!! TGAATTTAATGTAATCTAAA+TGG + chr1.2:6028565-6028584 None:intergenic 15.0%
!!! TAACCAAAGTTTTAATATAA+AGG - chr1.2:6029522-6029541 MS.gene24546:CDS 15.0%
!!! TAATAACTTTTATACGATAA+GGG + chr1.2:6030040-6030059 None:intergenic 15.0%
!!! TTAATAACTTTTATACGATA+AGG + chr1.2:6030041-6030060 None:intergenic 15.0%
!! AGACCTTTATATTAAAACTT+TGG + chr1.2:6029528-6029547 None:intergenic 20.0%
!! AGTGATTAGAGTTATATTTA+TGG - chr1.2:6030078-6030097 MS.gene24546:CDS 20.0%
!! ATTAGAGTTATATTTATGGT+TGG - chr1.2:6030082-6030101 MS.gene24546:CDS 20.0%
!! ATTTACTTGCAATAAAAAGT+GGG - chr1.2:6029753-6029772 MS.gene24546:CDS 20.0%
!! TCGATTATAGATAATACTTA+CGG + chr1.2:6029497-6029516 None:intergenic 20.0%
!! TTATTAACAATGAGATTTGA+GGG + chr1.2:6027803-6027822 None:intergenic 20.0%
!! TTCCATACATATTCAATAAT+TGG - chr1.2:6027879-6027898 MS.gene24546:intron 20.0%
!! TTTCAACTGATAAATAATCT+TGG + chr1.2:6029938-6029957 None:intergenic 20.0%
!!! ACTTTTCCAAGTAAAATTTA+TGG - chr1.2:6028901-6028920 MS.gene24546:intron 20.0%
!!! CATGTAAATTGATTTATGTT+TGG + chr1.2:6028777-6028796 None:intergenic 20.0%
!!! TTAAAACTGATTTTGGTATT+TGG - chr1.2:6029881-6029900 MS.gene24546:CDS 20.0%
! AACAAATGAATTATCAGCTA+TGG + chr1.2:6027747-6027766 None:intergenic 25.0%
! AACCAAAACAACATCATAAA+TGG - chr1.2:6027656-6027675 MS.gene24546:CDS 25.0%
! ACAAAGTAGATTTATTTCCT+CGG + chr1.2:6028399-6028418 None:intergenic 25.0%
! ATTTATCAGTTGAAAACATG+TGG - chr1.2:6029943-6029962 MS.gene24546:CDS 25.0%
! CATTTACTTGCAATAAAAAG+TGG - chr1.2:6029752-6029771 MS.gene24546:CDS 25.0%
! GTTATTAACAATGAGATTTG+AGG + chr1.2:6027804-6027823 None:intergenic 25.0%
! TCTTGATGAGATAAACTATT+CGG - chr1.2:6028357-6028376 MS.gene24546:CDS 25.0%
! TGCCAATTATTGAATATGTA+TGG + chr1.2:6027884-6027903 None:intergenic 25.0%
! TTATAGATAATACTTACGGA+TGG + chr1.2:6029493-6029512 None:intergenic 25.0%
! TTCATTCATTCAAAAGCAAT+GGG - chr1.2:6029364-6029383 MS.gene24546:CDS 25.0%
! TTCCAAGTAAAATTTATGGA+TGG - chr1.2:6028905-6028924 MS.gene24546:intron 25.0%
! TTGATTTCTGATGTTTAGAA+TGG - chr1.2:6028663-6028682 MS.gene24546:intron 25.0%
!! AACCATCCATAAATTTTACT+TGG + chr1.2:6028910-6028929 None:intergenic 25.0%
!!! AGAATGGATTTTGACATTTT+TGG - chr1.2:6028679-6028698 MS.gene24546:intron 25.0%
!!! GATCAAATTTTAACAGTTCA+TGG - chr1.2:6029309-6029328 MS.gene24546:CDS 25.0%
!!! GTCACATACATATTTTGATT+TGG - chr1.2:6029801-6029820 MS.gene24546:CDS 25.0%
!!! TAGTAGTCTTTATTTTACTC+AGG - chr1.2:6029118-6029137 MS.gene24546:intron 25.0%
!!! TTCCATTTATGATGTTGTTT+TGG + chr1.2:6027661-6027680 None:intergenic 25.0%
AAACATACACTAATTCGATC+AGG + chr1.2:6028615-6028634 None:intergenic 30.0%
AAGTTCATTGCTACAATTTG+AGG + chr1.2:6028095-6028114 None:intergenic 30.0%
AATGAATAGCAATGAATGAG+TGG + chr1.2:6027626-6027645 None:intergenic 30.0%
AATGGAATTCCAATACTTTC+TGG - chr1.2:6027674-6027693 MS.gene24546:CDS 30.0%
ACTGTTAAAATTTGATCCCA+TGG + chr1.2:6029306-6029325 None:intergenic 30.0%
AGCAAACATATTCTTTCCAT+GGG - chr1.2:6029287-6029306 MS.gene24546:CDS 30.0%
ATGGAACTTTCTATGAGTTT+AGG - chr1.2:6028232-6028251 MS.gene24546:intron 30.0%
CAAGGATTAAGTAATGTCTA+CGG + chr1.2:6029979-6029998 None:intergenic 30.0%
CAGTCAATATAGTCAATGTT+TGG - chr1.2:6029145-6029164 MS.gene24546:intron 30.0%
CTTCATTCATTCAAAAGCAA+TGG - chr1.2:6029363-6029382 MS.gene24546:CDS 30.0%
CTTGATGAGATAAACTATTC+GGG - chr1.2:6028358-6028377 MS.gene24546:CDS 30.0%
GATAAAAAACCTTGATACTG+TGG + chr1.2:6029567-6029586 None:intergenic 30.0%
GCAAATTGTATGATGTTGAA+TGG - chr1.2:6028968-6028987 MS.gene24546:intron 30.0%
TAGCAAACATATTCTTTCCA+TGG - chr1.2:6029286-6029305 MS.gene24546:CDS 30.0%
TATCTTGATCCTAATATTGC+CGG + chr1.2:6028283-6028302 None:intergenic 30.0%
TGAAAAGGAAAGATCAGTTA+TGG - chr1.2:6029399-6029418 MS.gene24546:CDS 30.0%
TGGAACTTTCTATGAGTTTA+GGG - chr1.2:6028233-6028252 MS.gene24546:intron 30.0%
! AAGTGAACAATTTTGCATCT+AGG + chr1.2:6028872-6028891 None:intergenic 30.0%
! ATATTTATGGTTGGTTGTGT+AGG - chr1.2:6030091-6030110 MS.gene24546:CDS 30.0%
! CCTGACTATTAATTTGGAAT+CGG + chr1.2:6029851-6029870 None:intergenic 30.0%
! GATAAGGGCTACATTTTTAA+TGG + chr1.2:6030025-6030044 None:intergenic 30.0%
! GTCATTAATTTGAGATCGAA+TGG + chr1.2:6029916-6029935 None:intergenic 30.0%
! TCATTTGTTACATCACAACA+TGG - chr1.2:6027758-6027777 MS.gene24546:intron 30.0%
! TCGAATTAGTGTATGTTTTC+TGG - chr1.2:6028617-6028636 MS.gene24546:CDS 30.0%
!!! TAGTCTTTATTTTACTCAGG+TGG - chr1.2:6029121-6029140 MS.gene24546:intron 30.0%
!!! TGATGTTGTTTTGGTTGTTA+AGG + chr1.2:6027652-6027671 None:intergenic 30.0%
AAACATCCAATCACGTAGAA+CGG + chr1.2:6029459-6029478 None:intergenic 35.0%
AAAGCTCAAGAGAGTAATGT+TGG - chr1.2:6027974-6027993 MS.gene24546:intron 35.0%
AAAGGAAAGATCAGTTATGG+AGG - chr1.2:6029402-6029421 MS.gene24546:CDS 35.0%
AAATGCTTCTCTGCATCTTT+AGG + chr1.2:6029737-6029756 None:intergenic 35.0%
AACGGTTTCTCGACTATATA+AGG - chr1.2:6029247-6029266 MS.gene24546:intron 35.0%
AAGTTACACACAAGGATCAA+AGG - chr1.2:6029038-6029057 MS.gene24546:intron 35.0%
AAGTTCCATACTACTACATG+AGG + chr1.2:6028221-6028240 None:intergenic 35.0%
AATTCGATCAGGACTATGAA+CGG + chr1.2:6028604-6028623 None:intergenic 35.0%
ACAATGATGTGATGCATTTC+AGG - chr1.2:6029708-6029727 MS.gene24546:CDS 35.0%
ACATTCCAAAGTTACACACA+AGG - chr1.2:6029030-6029049 MS.gene24546:intron 35.0%
AGAAAAGCTTGTCGAAATGA+AGG - chr1.2:6030191-6030210 MS.gene24546:CDS 35.0%
AGATCATTGATGAATGCATG+TGG - chr1.2:6029680-6029699 MS.gene24546:CDS 35.0%
ATTAATAGTCAGGTCAGGAT+CGG - chr1.2:6029858-6029877 MS.gene24546:CDS 35.0%
ATTTATTCCTATCCTTCGCT+TGG + chr1.2:6028431-6028450 None:intergenic 35.0%
CCGATTCCAAATTAATAGTC+AGG - chr1.2:6029848-6029867 MS.gene24546:CDS 35.0%
GACTTAACTCATAGCATGAA+TGG - chr1.2:6028172-6028191 MS.gene24546:intron 35.0%
GCATACATTTCCTCAATCAA+TGG + chr1.2:6030158-6030177 None:intergenic 35.0%
GTATTTCCTGAATTACAGCA+AGG + chr1.2:6028306-6028325 None:intergenic 35.0%
TAGATAATACTTACGGATGG+AGG + chr1.2:6029490-6029509 None:intergenic 35.0%
TAGCATGAATGGAACAAGAT+CGG - chr1.2:6028183-6028202 MS.gene24546:intron 35.0%
TATATAAGGACTTGAGAGAG+AGG - chr1.2:6029261-6029280 MS.gene24546:intron 35.0%
TCCAAATTAATAGTCAGGTC+AGG - chr1.2:6029853-6029872 MS.gene24546:CDS 35.0%
TCCTGACCTGACTATTAATT+TGG + chr1.2:6029857-6029876 None:intergenic 35.0%
TTAAGTAATGTCTACGGATC+CGG + chr1.2:6029973-6029992 None:intergenic 35.0%
TTGATCCTTGTGTGTAACTT+TGG + chr1.2:6029038-6029057 None:intergenic 35.0%
TTGTTACATCACAACATGGA+AGG - chr1.2:6027762-6027781 MS.gene24546:intron 35.0%
TTTACATGCAACACACTCTT+AGG - chr1.2:6028789-6028808 MS.gene24546:intron 35.0%
! AAGATACCTTGCTGTAATTC+AGG - chr1.2:6028297-6028316 MS.gene24546:intron 35.0%
! GTTGAAAACATGTGGTTTTC+CGG - chr1.2:6029951-6029970 MS.gene24546:CDS 35.0%
! TAAACATGTCAAGTTTTCGC+CGG - chr1.2:6028261-6028280 MS.gene24546:intron 35.0%
! TCTGGTTTCATTCTTGAACA+TGG - chr1.2:6028635-6028654 MS.gene24546:CDS 35.0%
! TTTGATGATTGCCATCCATT+TGG + chr1.2:6028040-6028059 None:intergenic 35.0%
! TTTTCAGTTCCTGCTAGAAT+TGG - chr1.2:6027830-6027849 MS.gene24546:intron 35.0%
!! ATGCTGATTCTTCATTGCAA+AGG - chr1.2:6028479-6028498 MS.gene24546:CDS 35.0%
!! GGATCGGTTAAAACTGATTT+TGG - chr1.2:6029874-6029893 MS.gene24546:CDS 35.0%
!!! AGGTTTTTTATCCCCAATTC+CGG - chr1.2:6029575-6029594 MS.gene24546:CDS 35.0%
!!! TAATCCTTGCTTGTTTTGAG+AGG - chr1.2:6029990-6030009 MS.gene24546:CDS 35.0%
ACAACATGGAAGGACTATTG+TGG - chr1.2:6027772-6027791 MS.gene24546:intron 40.0%
ACAAGCCTCATGTAGTAGTA+TGG - chr1.2:6028213-6028232 MS.gene24546:intron 40.0%
ACTCTTGATGCTTCTACAGA+TGG - chr1.2:6028528-6028547 MS.gene24546:CDS 40.0%
AGAACGGAAACAGATCTTTC+TGG + chr1.2:6029443-6029462 None:intergenic 40.0%
AGCATGAATGGAACAAGATC+GGG - chr1.2:6028184-6028203 MS.gene24546:intron 40.0%
AGTTCCTCTCAAAACAAGCA+AGG + chr1.2:6029997-6030016 None:intergenic 40.0%
ATAGGGAACATCGATCCAAA+TGG - chr1.2:6028022-6028041 MS.gene24546:intron 40.0%
ATCACCAAAAGTTGCACACA+AGG + chr1.2:6027927-6027946 None:intergenic 40.0%
GCAAAGTGTGCATGTATTTG+TGG + chr1.2:6029221-6029240 None:intergenic 40.0%
GGAATTCCAATACTTTCTGG+TGG - chr1.2:6027677-6027696 MS.gene24546:CDS 40.0%
GGTTTATAAATGCGCGTGTT+CGG - chr1.2:6030123-6030142 MS.gene24546:CDS 40.0%
GTACACTGCTCAAATGAACA+TGG - chr1.2:6027550-6027569 MS.gene24546:CDS 40.0%
TAACAGTTCATGGTCAGAAG+AGG - chr1.2:6029319-6029338 MS.gene24546:CDS 40.0%
TCACCAAAAGTTGCACACAA+GGG + chr1.2:6027926-6027945 None:intergenic 40.0%
TCAGCATAAGCTTCTGACAT+AGG + chr1.2:6028466-6028485 None:intergenic 40.0%
TCATGTCATATTCGCCGATA+GGG - chr1.2:6028005-6028024 MS.gene24546:intron 40.0%
TCTTGAAGACCAATTCTAGC+AGG + chr1.2:6027842-6027861 None:intergenic 40.0%
TGGTTGTGTAGGTATCAAAC+TGG - chr1.2:6030102-6030121 MS.gene24546:CDS 40.0%
TTCATGGTCAGAAGAGGATA+AGG - chr1.2:6029325-6029344 MS.gene24546:CDS 40.0%
TTCATGTCATATTCGCCGAT+AGG - chr1.2:6028004-6028023 MS.gene24546:intron 40.0%
TTTGGATCGATGTTCCCTAT+CGG + chr1.2:6028022-6028041 None:intergenic 40.0%
! AAGTTTTCGCCGGCAATATT+AGG - chr1.2:6028271-6028290 MS.gene24546:intron 40.0%
! GAGATAAACTATTCGGGTTC+TGG - chr1.2:6028364-6028383 MS.gene24546:CDS 40.0%
! GCTATGGAAACCATTGATTG+AGG - chr1.2:6030145-6030164 MS.gene24546:CDS 40.0%
! TGCACACTTTGCTGTCAAAA+CGG - chr1.2:6029229-6029248 MS.gene24546:intron 40.0%
! TGTTCTCCACCAGAAAGTAT+TGG + chr1.2:6027686-6027705 None:intergenic 40.0%
AACACAACCAAGCGAAGGAT+AGG - chr1.2:6028421-6028440 MS.gene24546:CDS 45.0%
ACTGCTCAAATGAACATGGC+TGG - chr1.2:6027554-6027573 MS.gene24546:CDS 45.0%
ATGAGAGCAGTGAAAGAAGC+AGG - chr1.2:6030219-6030238 MS.gene24546:CDS 45.0%
CACCAAAAGTTGCACACAAG+GGG + chr1.2:6027925-6027944 None:intergenic 45.0%
CTGTTTCCGTTCTACGTGAT+TGG - chr1.2:6029450-6029469 MS.gene24546:CDS 45.0%
CTTGCAACATCACCAACTTC+AGG - chr1.2:6028124-6028143 MS.gene24546:intron 45.0%
GAATGGAACAAGATCGGGTT+TGG - chr1.2:6028189-6028208 MS.gene24546:intron 45.0%
GGAACATCGATCCAAATGGA+TGG - chr1.2:6028026-6028045 MS.gene24546:CDS 45.0%
GGGCTCTTCAACAGTTGAAA+AGG - chr1.2:6029384-6029403 MS.gene24546:CDS 45.0%
GGTCAATGCTCAGAGATTAG+TGG - chr1.2:6028145-6028164 MS.gene24546:intron 45.0%
! AACCCCTTGTGTGCAACTTT+TGG - chr1.2:6027920-6027939 MS.gene24546:intron 45.0%
! TATTCGGGTTCTGGTGTTAG+AGG - chr1.2:6028373-6028392 MS.gene24546:CDS 45.0%
!! AAGTGGGTTGACTAGAAGTC+AGG - chr1.2:6029769-6029788 MS.gene24546:CDS 45.0%
!! TCTGAGCATTGACCTGAAGT+TGG + chr1.2:6028139-6028158 None:intergenic 45.0%
ATCAGTTATGGAGGCCCCAA+AGG - chr1.2:6029411-6029430 MS.gene24546:CDS 50.0%
CGATTGCAGCCACAGTATCA+AGG - chr1.2:6029555-6029574 MS.gene24546:CDS 50.0%
TAAATGCGCGTGTTCGGCTA+TGG - chr1.2:6030129-6030148 MS.gene24546:CDS 50.0%
TCAGTTATGGAGGCCCCAAA+GGG - chr1.2:6029412-6029431 MS.gene24546:CDS 50.0%
TGTCGAACACAACCAAGCGA+AGG - chr1.2:6028416-6028435 MS.gene24546:CDS 50.0%
! ATCTTTCTGGCAAGCCCCTT+TGG + chr1.2:6029430-6029449 None:intergenic 50.0%
! TCTTTCTGGCAAGCCCCTTT+GGG + chr1.2:6029429-6029448 None:intergenic 50.0%
AGCTGATGCAGCCGGAATTG+GGG + chr1.2:6029589-6029608 None:intergenic 55.0%
CAGCTGATGCAGCCGGAATT+GGG + chr1.2:6029590-6029609 None:intergenic 55.0%
CAGTTATGGAGGCCCCAAAG+GGG - chr1.2:6029413-6029432 MS.gene24546:CDS 55.0%
CGAAATGCAGCTGATGCAGC+CGG + chr1.2:6029597-6029616 None:intergenic 55.0%
! CTTTCTGGCAAGCCCCTTTG+GGG + chr1.2:6029428-6029447 None:intergenic 55.0%
GCAGCTGATGCAGCCGGAAT+TGG + chr1.2:6029591-6029610 None:intergenic 60.0%
! GGTTCTGGTGTTAGAGGCCG+AGG - chr1.2:6028379-6028398 MS.gene24546:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 6027536 6030277 6027536 ID=MS.gene24546
chr1.2 mRNA 6027536 6030277 6027536 ID=MS.gene24546.t1;Parent=MS.gene24546
chr1.2 exon 6029264 6030277 6029264 ID=MS.gene24546.t1.exon1;Parent=MS.gene24546.t1
chr1.2 CDS 6029264 6030277 6029264 ID=cds.MS.gene24546.t1;Parent=MS.gene24546.t1
chr1.2 exon 6028318 6028673 6028318 ID=MS.gene24546.t1.exon2;Parent=MS.gene24546.t1
chr1.2 CDS 6028318 6028673 6028318 ID=cds.MS.gene24546.t1;Parent=MS.gene24546.t1
chr1.2 exon 6028023 6028083 6028023 ID=MS.gene24546.t1.exon3;Parent=MS.gene24546.t1
chr1.2 CDS 6028023 6028083 6028023 ID=cds.MS.gene24546.t1;Parent=MS.gene24546.t1
chr1.2 exon 6027536 6027700 6027536 ID=MS.gene24546.t1.exon4;Parent=MS.gene24546.t1
chr1.2 CDS 6027536 6027700 6027536 ID=cds.MS.gene24546.t1;Parent=MS.gene24546.t1
Gene Sequence

>MS.gene24546

ATGGAGAATGATGTGTACACTGCTCAAATGAACATGGCTGGTCAAGTTTCAAATATAGAAGATATCACACAACATCTAACACAAAAGCCACTCATTCATTGCTATTCATTTGACCTTAACAACCAAAACAACATCATAAATGGAATTCCAATACTTTCTGGTGGAGAACAAGATCAACATGTTGATGCTAGTTTCATGAATCAAGTTACCATAGCTGATAATTCATTTGTTACATCACAACATGGAAGGACTATTGTGGAAAATCCCTCAAATCTCATTGTTAATAACAATGACTTTTCAGTTCCTGCTAGAATTGGTCTTCAAGAAAATTTAGAAGCAATAGTTCCATACATATTCAATAATTGGCATGATACTTCAAACTCAAACCCCTTGTGTGCAACTTTTGGTGATAATAATAGCTATGTTAACAAGTTTTTGAAAGCTCAAGAGAGTAATGTTGGAACTGAATTCATGTCATATTCGCCGATAGGGAACATCGATCCAAATGGATGGCAATCATCAAATGTTGCTAACTTAACAAATCTTGCTTATAGTTCCTCAAATTGTAGCAATGAACTTTCACTAAGTCTTGCAACATCACCAACTTCAGGTCAATGCTCAGAGATTAGTGGTTCTGACTTAACTCATAGCATGAATGGAACAAGATCGGGTTTGGAACAAGCCTCATGTAGTAGTATGGAACTTTCTATGAGTTTAGGGAATGATAAACATGTCAAGTTTTCGCCGGCAATATTAGGATCAAGATACCTTGCTGTAATTCAGGAAATACTTGTTCAAATTGCAACATATTCATTTGAAAATCTTGATGAGATAAACTATTCGGGTTCTGGTGTTAGAGGCCGAGGAAATAAATCTACTTTGTCGAACACAACCAAGCGAAGGATAGGAATAAATCGCGATGAGAGTCCTATGTCAGAAGCTTATGCTGATTCTTCATTGCAAAGGCATGCTGTTGAATCAAAGCAATCTCAACTCTTGATGCTTCTACAGATGGTACATTGCTAACCATTTAGATTACATTAAATTCATTTGATTTTCGTAAAGCCGTTCATAGTCCTGATCGAATTAGTGTATGTTTTCTGGTTTCATTCTTGAACATGGAAAAATTGATTTCTGATGTTTAGAATGGATTTTGACATTTTTGGATGTTTGTTTTCTAGTAGAGTTGATACTTTGAGCTAGAATTTATCGCTCAATCAACTTTTACATGAATCTATCCAAACATAAATCAATTTACATGCAACACACTCTTAGGCAGAATCAAATTTACTGAAATCAAATCAAAATTAATTTTTGTAATTGTAGAAGCAAACCTAGATGCAAAATTGTTCACTTTGCAATTTCACTTTTCCAAGTAAAATTTATGGATGGTTGAAAGTTCTTATACTAGTTCAGATCAAAACTTTGAAAAGCAAATTGTATGATGTTGAATGGTACTCTATGAACAGTTGTTATTTGAACATCAAAATAACTACATTCCAAAGTTACACACAAGGATCAAAGGAAATTTTGATGTTCGAAAATTATTTCTCTATATGAAAATTTTGTTCAAAAATGCTGATAGTAGTCTTTATTTTACTCAGGTGGACAGTCAATATAGTCAATGTTTGGATGAGATTCACACTGTCGTATCAGCATTTCATGCTGCTACTGAGCTCGATCCACAAATACATGCACACTTTGCTGTCAAAACGGTTTCTCGACTATATAAGGACTTGAGAGAGAGGATTAGCAAACATATTCTTTCCATGGGATCAAATTTTAACAGTTCATGGTCAGAAGAGGATAAGGAATTGTCTGTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTTCAACAGTTGAAAAGGAAAGATCAGTTATGGAGGCCCCAAAGGGGCTTGCCAGAAAGATCTGTTTCCGTTCTACGTGATTGGATGTTTCAGAATTTCCTCCATCCGTAAGTATTATCTATAATCGAACATATAACCAAAGTTTTAATATAAAGGTCTTCAACTGCGATTGCAGCCACAGTATCAAGGTTTTTTATCCCCAATTCCGGCTGCATCAGCTGCATTTCGCTACATTATCAATGATTGCGATGCAACTGCGACTGCAATTTAGAACCTTTATCTATAATAATAAGATCATTGATGAATGCATGTGGATTTAACAATGATGTGATGCATTTCAGGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAATAAAAAGTGGGTTGACTAGAAGTCAGGTATGCTATTGTCACATACATATTTTGATTTGGTGTAGTAACTACGCTACGCAGTTTCCGATTCCAAATTAATAGTCAGGTCAGGATCGGTTAAAACTGATTTTGGTATTTGGTAATCTAAACCATTCGATCTCAAATTAATGACCAAGATTATTTATCAGTTGAAAACATGTGGTTTTCCGGATCCGTAGACATTACTTAATCCTTGCTTGTTTTGAGAGGAACTATTTGCCATTAAAAATGTAGCCCTTATCGTATAAAAGTTATTAAACATATTATTTGTTGATAGTGATTAGAGTTATATTTATGGTTGGTTGTGTAGGTATCAAACTGGTTTATAAATGCGCGTGTTCGGCTATGGAAACCATTGATTGAGGAAATGTATGCTGAAATGAATAGAAGAAAAGCTTGTCGAAATGAAGGAGAAAATGAGAGCAGTGAAAGAAGCAGGATAAGCATTAACAATCAAATGTTTAATATGAATTGA
Protein sequence

>MS.gene24546.t1

MENDVYTAQMNMAGQVSNIEDITQHLTQKPLIHCYSFDLNNQNNIINGIPILSGGEQDQHVDASFMNQVTIADNSFVTSQHGRTIVENPSNLIVNNNDFSVPARIGLQENLEAIVPYIFNNWHDTSNSNPLCATFGDNNSYVNKFLKAQESNVGTEFMSYSPIGNIDPNGWQSSNVANLTNLAYSSSNCSNELSLSLATSPTSGQCSEISGSDLTHSMNGTRSGLEQASCSSMELSMSLGNDKHVKFSPAILGSRYLAVIQEILVQIATYSFENLDEINYSGSGVRGRGNKSTLSNTTKRRIGINRDESPMSEAYADSSLQRHAVESKQSQLLMLLQMVDSQYSQCLDEIHTVVSAFHAATELDPQIHAHFAVKTVSRLYKDLRERISKHILSMGSNFNSSWSEEDKELSVETSFIQKQWALQQLKRKDQLWRPQRGLPERSVSVLRDWMFQNFLHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVRLWKPLIEEMYAEMNRRKACRNEGENESSERSRISINNQMFNMN