AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24778

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24778.t1 MTR_4g124910 95.257 253 12 0 1 253 1 253 1.37e-174 481
MS.gene24778.t1 MTR_2g043230 76.378 254 59 1 1 253 1 254 6.61e-142 398
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24778.t1 AT5G20720 75.294 255 59 2 1 253 1 253 1.20e-135 382
MS.gene24778.t1 AT5G20720 75.294 255 59 2 1 253 1 253 1.20e-135 382
MS.gene24778.t1 AT5G20720 75.294 255 59 2 1 253 1 253 1.20e-135 382
MS.gene24778.t1 AT5G20720 75.294 255 59 2 1 253 1 253 1.20e-135 382

Find 64 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTCATTCCCTGCATATT+TGG 0.259970 8.2:-7978084 None:intergenic
AACTGTATTCCCGGGTGAAA+TGG 0.321202 8.2:-7978054 None:intergenic
CCTCGTAACAATGCTAGAAT+TGG 0.335567 8.2:+7976172 MS.gene24778:CDS
TTCCCGGGTGAAATGGATAA+TGG 0.363835 8.2:-7978047 None:intergenic
TTTAAGATCTTTGACCTCTT+CGG 0.402758 8.2:-7977311 None:intergenic
AGGAACCTTTCTTCCTTTGA+AGG 0.413360 8.2:+7976124 MS.gene24778:CDS
GGAGTACAAAACTGTATTCC+CGG 0.420138 8.2:-7978063 None:intergenic
TATCAAGACTCTGTCATTCA+AGG 0.421253 8.2:-7977335 None:intergenic
CCTTCGTCATCCACAGGCCC+TGG 0.444066 8.2:-7978014 None:intergenic
GGCTTTGATTGAGCAGTTGA+TGG 0.449739 8.2:-7977024 None:intergenic
CTGTTGCCTTCGTCATCCAC+AGG 0.452383 8.2:-7978020 None:intergenic
CAGGTGATAGCTGTTGGTCC+AGG 0.460455 8.2:+7977996 MS.gene24778:intron
GAATGACAGAGTCTTGATAA+AGG 0.473936 8.2:+7977339 MS.gene24778:CDS
TTGGAGACGGGAAGACAGTT+GGG 0.483437 8.2:+7977070 MS.gene24778:CDS
GCAATCCTTCAAAGGAAGAA+AGG 0.496887 8.2:-7976129 None:intergenic
GCCAATGGATGGCTTATCCT+TGG 0.505865 8.2:-7977573 None:intergenic
AATGACTTCAAAGGCAAAGA+TGG 0.508584 8.2:+7978098 MS.gene24778:CDS
GAGGTAGTTGCTGTTGGAGA+CGG 0.521962 8.2:+7977057 MS.gene24778:CDS
GTTGGAGACGGGAAGACAGT+TGG 0.523055 8.2:+7977069 MS.gene24778:CDS
TGCTGGTGGTTTGTTGCTCA+CGG 0.524264 8.2:+7977544 MS.gene24778:CDS
ATCAAGACTCTGTCATTCAA+GGG 0.529761 8.2:-7977334 None:intergenic
CTGCTCAATCAAAGCCTCAA+GGG 0.533192 8.2:+7977031 MS.gene24778:CDS
AGGTAGTTGCTGTTGGAGAC+GGG 0.539082 8.2:+7977058 MS.gene24778:CDS
GCCACTAGGTGATAGAGTAC+TGG 0.539283 8.2:+7976954 MS.gene24778:CDS
AAGCTTACCGTGCCAATGGA+TGG 0.542126 8.2:-7977584 None:intergenic
AGAAAAGCTTACCGTGCCAA+TGG 0.548046 8.2:-7977588 None:intergenic
GGAACTGAAGTGGAGTTCAA+TGG 0.549387 8.2:+7977238 MS.gene24778:CDS
AGCTGTTGGTCCAGGGCCTG+TGG 0.552111 8.2:+7978004 MS.gene24778:CDS
GGAAGTTCGCAATCCTTCAA+AGG 0.561777 8.2:-7976137 None:intergenic
GCGGCTTTAACAACAATAGA+CGG 0.565089 8.2:-7976217 None:intergenic
TTCAAAACATCTTATACTGA+AGG 0.568271 8.2:+7977261 MS.gene24778:CDS
CATACAACTGTCAAGCCACT+AGG 0.568378 8.2:+7976940 MS.gene24778:CDS
ACCAAGGATAAGCCATCCAT+TGG 0.568643 8.2:+7977572 MS.gene24778:CDS
TATGCAGGGAATGACTTCAA+AGG 0.569312 8.2:+7978089 MS.gene24778:CDS
TTTGAGAGCCTCAGATGTCA+TGG 0.571249 8.2:+7978136 MS.gene24778:CDS
GAGTACAAAACTGTATTCCC+GGG 0.572521 8.2:-7978062 None:intergenic
CTGAAGGATGATGACATCGT+TGG 0.572824 8.2:+7977277 MS.gene24778:CDS
TGCTCAATCAAAGCCTCAAG+GGG 0.578517 8.2:+7977032 MS.gene24778:CDS
AGGTGATAGCTGTTGGTCCA+GGG 0.579593 8.2:+7977997 MS.gene24778:intron
AAAGTATGCAGGAACTGAAG+TGG 0.581171 8.2:+7977228 MS.gene24778:CDS
ACTGCTCAATCAAAGCCTCA+AGG 0.582194 8.2:+7977030 MS.gene24778:CDS
GTTGTGTACTCAAAGTATGC+AGG 0.590902 8.2:+7977217 MS.gene24778:CDS
AAACCATTATCCATTTCACC+CGG 0.592297 8.2:+7978044 MS.gene24778:CDS
CGGCTTTAACAACAATAGAC+GGG 0.595648 8.2:-7976216 None:intergenic
GGATGCAGAAGAGAAAACTC+AGG 0.597980 8.2:+7976987 MS.gene24778:CDS
ACCAGTACTCTATCACCTAG+TGG 0.604909 8.2:-7976955 None:intergenic
CAAAGTGGACATTAGTGTGA+AGG 0.607471 8.2:+7977098 MS.gene24778:CDS
GAATTGGTATTCTTACACAA+AGG 0.614844 8.2:+7976188 MS.gene24778:CDS
CCAGGGCCTGTGGATGACGA+AGG 0.620963 8.2:+7978014 MS.gene24778:CDS
AAAATAGCCAAAATTAAGAG+AGG 0.622578 8.2:-7978163 None:intergenic
GTTGCTCACGGAAGCAACCA+AGG 0.626344 8.2:+7977556 MS.gene24778:CDS
GAGGATAGCCATGACATCTG+AGG 0.634831 8.2:-7978144 None:intergenic
CCAATTCTAGCATTGTTACG+AGG 0.641555 8.2:-7976172 None:intergenic
AACCATTATCCATTTCACCC+GGG 0.641591 8.2:+7978045 MS.gene24778:CDS
GTTACGAGGAAAATGAATTG+CGG 0.642882 8.2:-7976158 None:intergenic
GGATAAGCCATCCATTGGCA+CGG 0.647992 8.2:+7977577 MS.gene24778:CDS
CTGCTTCATCGATTTCTACG+AGG 0.656045 8.2:+7976104 MS.gene24778:CDS
TGGTATTCTTGAAACCGAAG+AGG 0.662324 8.2:+7977297 MS.gene24778:CDS
GCTGCAGGTTGCAGAAGCTG+AGG 0.680718 8.2:+7977514 MS.gene24778:intron
GATGCAGAAGAGAAAACTCA+GGG 0.684794 8.2:+7976988 MS.gene24778:CDS
ATGTAACAGGTGATAGCTGT+TGG 0.691284 8.2:+7977990 MS.gene24778:intron
GACAGTTGGGAAGAACAAAG+TGG 0.692016 8.2:+7977083 MS.gene24778:CDS
GCAGAAGAGAAAACTCAGGG+TGG 0.728959 8.2:+7976991 MS.gene24778:CDS
GCTCAATCAAAGCCTCAAGG+GGG 0.730531 8.2:+7977033 MS.gene24778:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAAAATAATACCT+TGG - chr8.2:7976257-7976276 None:intergenic 10.0%
!! AAAAATAAAAATAATACCTT+GGG - chr8.2:7976256-7976275 None:intergenic 10.0%
!!! AAGGTATTATTTTTATTTTT+TGG + chr8.2:7976256-7976275 MS.gene24778:intron 10.0%
!!! AGGTATTATTTTTATTTTTT+GGG + chr8.2:7976257-7976276 MS.gene24778:intron 10.0%
!!! TTTTCAAAAAATTAAAACAA+TGG + chr8.2:7977727-7977746 MS.gene24778:intron 10.0%
!! AAAATAAAAATAATACCTTG+GGG - chr8.2:7976255-7976274 None:intergenic 15.0%
!! CGAAAAATATTCATAAATAT+TGG - chr8.2:7976735-7976754 None:intergenic 15.0%
!! GTTAAGACAAATAATTAAAT+GGG - chr8.2:7977421-7977440 None:intergenic 15.0%
!! AAATAAAAATAATACCTTGG+GGG - chr8.2:7976254-7976273 None:intergenic 20.0%
!! AAGTATACTGTTTCAAAAAA+AGG - chr8.2:7977619-7977638 None:intergenic 20.0%
!! ACAAGATGAAATTACTAATA+AGG - chr8.2:7976918-7976937 None:intergenic 20.0%
!! CAAAAAATTAAAACAATGGA+TGG + chr8.2:7977731-7977750 MS.gene24778:intron 20.0%
!! GAAAAATATTCAAAAATGGT+GGG - chr8.2:7976709-7976728 None:intergenic 20.0%
!! GGTTAAGACAAATAATTAAA+TGG - chr8.2:7977422-7977441 None:intergenic 20.0%
!! GTCTGAAAAATATTCAAAAA+TGG - chr8.2:7976713-7976732 None:intergenic 20.0%
!! TGAAAAATATTCAAAAATGG+TGG - chr8.2:7976710-7976729 None:intergenic 20.0%
!! TTCAGACCAATAAAAAAAAA+GGG + chr8.2:7976633-7976652 MS.gene24778:intron 20.0%
!! TTTCAGACCAATAAAAAAAA+AGG + chr8.2:7976632-7976651 MS.gene24778:intron 20.0%
!!! TACATTTTCTCTTATACTAA+GGG - chr8.2:7976525-7976544 None:intergenic 20.0%
!!! TATTTTTATTTTTTGGGTCA+TGG + chr8.2:7976263-7976282 MS.gene24778:intron 20.0%
! TAACACCTTAATGCAAAATA+TGG - chr8.2:7977443-7977462 None:intergenic 25.0%
! TGTAATGTATTTCTCTTTAC+AGG + chr8.2:7977183-7977202 MS.gene24778:intron 25.0%
! TTCAAAACATCTTATACTGA+AGG + chr8.2:7977261-7977280 MS.gene24778:CDS 25.0%
!! ACATTTTCTCTTATACTAAG+GGG - chr8.2:7976524-7976543 None:intergenic 25.0%
!! CTTAACCATATTTTGCATTA+AGG + chr8.2:7977435-7977454 MS.gene24778:intron 25.0%
!! GTACATTTTCTCTTATACTA+AGG - chr8.2:7976526-7976545 None:intergenic 25.0%
!! TTTATTTATTGCTTTAGCTC+AGG + chr8.2:7977873-7977892 MS.gene24778:intron 25.0%
AAACACTAGAAATAATCCCA+TGG - chr8.2:7976860-7976879 None:intergenic 30.0%
AACACTAGAAATAATCCCAT+GGG - chr8.2:7976859-7976878 None:intergenic 30.0%
AATAAAAAAAAAGGGCAACC+CGG + chr8.2:7976641-7976660 MS.gene24778:intron 30.0%
AATTAAAACAATGGATGGTC+TGG + chr8.2:7977736-7977755 MS.gene24778:intron 30.0%
AGAATTGCAAGAATGTGATT+TGG + chr8.2:7977700-7977719 MS.gene24778:intron 30.0%
CCAAAATAAAAGAAAGACCA+AGG - chr8.2:7977158-7977177 None:intergenic 30.0%
GAATGGTTATTTACATACCT+AGG - chr8.2:7977958-7977977 None:intergenic 30.0%
GAATTGCAAGAATGTGATTT+GGG + chr8.2:7977701-7977720 MS.gene24778:intron 30.0%
GAATTGGTATTCTTACACAA+AGG + chr8.2:7976188-7976207 MS.gene24778:CDS 30.0%
GCAATGTTATATCGTATGAA+GGG + chr8.2:7977668-7977687 MS.gene24778:intron 30.0%
GTTGTGTTTATAAGCTATCT+TGG + chr8.2:7976376-7976395 MS.gene24778:intron 30.0%
TTGAAAGAGCTTATAGCTTA+TGG - chr8.2:7976443-7976462 None:intergenic 30.0%
! AATAACCATTCTACTCCTTT+TGG + chr8.2:7977967-7977986 MS.gene24778:intron 30.0%
! CATTAAGGTGTTACGTTTAA+AGG + chr8.2:7977450-7977469 MS.gene24778:intron 30.0%
! TGGATTTTCTTCATTATCTG+CGG + chr8.2:7976283-7976302 MS.gene24778:intron 30.0%
! TTTAAGATCTTTGACCTCTT+CGG - chr8.2:7977314-7977333 None:intergenic 30.0%
! TTTTGTACTCCAAATATGCA+GGG + chr8.2:7978075-7978094 MS.gene24778:CDS 30.0%
!! CCTTGGTCTTTCTTTTATTT+TGG + chr8.2:7977155-7977174 MS.gene24778:intron 30.0%
!! TAGAGTACTGGTAAAAATCA+AGG + chr8.2:7976966-7976985 MS.gene24778:CDS 30.0%
!!! TTGTTTTGATCGAGTAGTTT+TGG + chr8.2:7977931-7977950 MS.gene24778:intron 30.0%
AAACCATTATCCATTTCACC+CGG + chr8.2:7978044-7978063 MS.gene24778:CDS 35.0%
AAAGAAAGACCAAGGCTTAA+AGG - chr8.2:7977150-7977169 None:intergenic 35.0%
AACACATTCTACCGTCTTAA+GGG - chr8.2:7977828-7977847 None:intergenic 35.0%
AATGACTTCAAAGGCAAAGA+TGG + chr8.2:7978098-7978117 MS.gene24778:CDS 35.0%
ACCTGCAGCATCATAATTAA+AGG - chr8.2:7977503-7977522 None:intergenic 35.0%
ACTAGCATTATCCCTTAAGA+CGG + chr8.2:7977814-7977833 MS.gene24778:intron 35.0%
ATCAAGACTCTGTCATTCAA+GGG - chr8.2:7977337-7977356 None:intergenic 35.0%
ATCTCATAATGCACTTGAGT+GGG - chr8.2:7976469-7976488 None:intergenic 35.0%
ATGTATTTCTCTTTACAGGC+AGG + chr8.2:7977187-7977206 MS.gene24778:intron 35.0%
GAATGACAGAGTCTTGATAA+AGG + chr8.2:7977339-7977358 MS.gene24778:CDS 35.0%
GGCAATGTTATATCGTATGA+AGG + chr8.2:7977667-7977686 MS.gene24778:intron 35.0%
GTTACGAGGAAAATGAATTG+CGG - chr8.2:7976161-7976180 None:intergenic 35.0%
TAAAGGATTCCATAAGCTAG+TGG - chr8.2:7977133-7977152 None:intergenic 35.0%
TACATCCAAAAGGAGTAGAA+TGG - chr8.2:7977975-7977994 None:intergenic 35.0%
TATCAAGACTCTGTCATTCA+AGG - chr8.2:7977338-7977357 None:intergenic 35.0%
TATCACCTGTTACATCCAAA+AGG - chr8.2:7977985-7978004 None:intergenic 35.0%
TATCTCATAATGCACTTGAG+TGG - chr8.2:7976470-7976489 None:intergenic 35.0%
TGTTATATCGTATGAAGGGA+AGG + chr8.2:7977672-7977691 MS.gene24778:intron 35.0%
TTATGGAATCCTTTAAGCCT+TGG + chr8.2:7977138-7977157 MS.gene24778:intron 35.0%
! AACACCACTCTTCTAAAAGA+GGG + chr8.2:7977646-7977665 MS.gene24778:intron 35.0%
! GTTTTGTACTCCAAATATGC+AGG + chr8.2:7978074-7978093 MS.gene24778:CDS 35.0%
! TAACACCACTCTTCTAAAAG+AGG + chr8.2:7977645-7977664 MS.gene24778:intron 35.0%
!!! GGGTTGCCCTTTTTTTTTAT+TGG - chr8.2:7976642-7976661 None:intergenic 35.0%
AAAGTATGCAGGAACTGAAG+TGG + chr8.2:7977228-7977247 MS.gene24778:CDS 40.0%
AACCATTATCCATTTCACCC+GGG + chr8.2:7978045-7978064 MS.gene24778:CDS 40.0%
ACAGAGTCTTGATAAAGGTG+TGG + chr8.2:7977344-7977363 MS.gene24778:intron 40.0%
AGAAATAATCCCATGGGACA+GGG - chr8.2:7976853-7976872 None:intergenic 40.0%
AGGAACCTTTCTTCCTTTGA+AGG + chr8.2:7976124-7976143 MS.gene24778:CDS 40.0%
ATGTAACAGGTGATAGCTGT+TGG + chr8.2:7977990-7978009 MS.gene24778:intron 40.0%
CAAAGTGGACATTAGTGTGA+AGG + chr8.2:7977098-7977117 MS.gene24778:CDS 40.0%
CAACACATTCTACCGTCTTA+AGG - chr8.2:7977829-7977848 None:intergenic 40.0%
CCAATTCTAGCATTGTTACG+AGG - chr8.2:7976175-7976194 None:intergenic 40.0%
CCTCGTAACAATGCTAGAAT+TGG + chr8.2:7976172-7976191 MS.gene24778:CDS 40.0%
GAAGTCATTCCCTGCATATT+TGG - chr8.2:7978087-7978106 None:intergenic 40.0%
GAGTACAAAACTGTATTCCC+GGG - chr8.2:7978065-7978084 None:intergenic 40.0%
GATGCAGAAGAGAAAACTCA+GGG + chr8.2:7976988-7977007 MS.gene24778:CDS 40.0%
GCAATCCTTCAAAGGAAGAA+AGG - chr8.2:7976132-7976151 None:intergenic 40.0%
GCCTTTAATTATGATGCTGC+AGG + chr8.2:7977499-7977518 MS.gene24778:intron 40.0%
GGAGTACAAAACTGTATTCC+CGG - chr8.2:7978066-7978085 None:intergenic 40.0%
GTTGTGTACTCAAAGTATGC+AGG + chr8.2:7977217-7977236 MS.gene24778:CDS 40.0%
TAGAAATAATCCCATGGGAC+AGG - chr8.2:7976854-7976873 None:intergenic 40.0%
TATGCAGGGAATGACTTCAA+AGG + chr8.2:7978089-7978108 MS.gene24778:CDS 40.0%
TGGTATTCTTGAAACCGAAG+AGG + chr8.2:7977297-7977316 MS.gene24778:CDS 40.0%
! ATTGCTTTAGCTCAGGTCAT+TGG + chr8.2:7977880-7977899 MS.gene24778:intron 40.0%
! CGGCTTTAACAACAATAGAC+GGG - chr8.2:7976219-7976238 None:intergenic 40.0%
! CTACTCCTTTTGGATGTAAC+AGG + chr8.2:7977977-7977996 MS.gene24778:intron 40.0%
! GCGGCTTTAACAACAATAGA+CGG - chr8.2:7976220-7976239 None:intergenic 40.0%
! TTTAGCTCAGGTCATTGGTT+TGG + chr8.2:7977885-7977904 MS.gene24778:intron 40.0%
!! ATTGCCCTCTTTTAGAAGAG+TGG - chr8.2:7977653-7977672 None:intergenic 40.0%
AACTGTATTCCCGGGTGAAA+TGG - chr8.2:7978057-7978076 None:intergenic 45.0%
ACCAAGGATAAGCCATCCAT+TGG + chr8.2:7977572-7977591 MS.gene24778:CDS 45.0%
ACCAGTACTCTATCACCTAG+TGG - chr8.2:7976958-7976977 None:intergenic 45.0%
ACTGCTCAATCAAAGCCTCA+AGG + chr8.2:7977030-7977049 MS.gene24778:CDS 45.0%
AGAAAAGCTTACCGTGCCAA+TGG - chr8.2:7977591-7977610 None:intergenic 45.0%
ATACATAAGCCCTGTCCCAT+GGG + chr8.2:7976841-7976860 MS.gene24778:intron 45.0%
CATACAACTGTCAAGCCACT+AGG + chr8.2:7976940-7976959 MS.gene24778:CDS 45.0%
CTACAGCGAGAGATCAAAGT+AGG + chr8.2:7976574-7976593 MS.gene24778:intron 45.0%
CTGAAGGATGATGACATCGT+TGG + chr8.2:7977277-7977296 MS.gene24778:CDS 45.0%
CTGCTCAATCAAAGCCTCAA+GGG + chr8.2:7977031-7977050 MS.gene24778:CDS 45.0%
GAAGCTGAGGAAAAAACTGC+TGG + chr8.2:7977527-7977546 MS.gene24778:CDS 45.0%
GACAGTTGGGAAGAACAAAG+TGG + chr8.2:7977083-7977102 MS.gene24778:CDS 45.0%
GGAACTGAAGTGGAGTTCAA+TGG + chr8.2:7977238-7977257 MS.gene24778:CDS 45.0%
GGAAGTTCGCAATCCTTCAA+AGG - chr8.2:7976140-7976159 None:intergenic 45.0%
GGATGCAGAAGAGAAAACTC+AGG + chr8.2:7976987-7977006 MS.gene24778:CDS 45.0%
GGGATAATGCTAGTTGCTAC+AGG - chr8.2:7977808-7977827 None:intergenic 45.0%
TATACATAAGCCCTGTCCCA+TGG + chr8.2:7976840-7976859 MS.gene24778:intron 45.0%
TGCTCAATCAAAGCCTCAAG+GGG + chr8.2:7977032-7977051 MS.gene24778:CDS 45.0%
TTCCCGGGTGAAATGGATAA+TGG - chr8.2:7978050-7978069 None:intergenic 45.0%
TTTGAGAGCCTCAGATGTCA+TGG + chr8.2:7978136-7978155 MS.gene24778:CDS 45.0%
! GGCTTTGATTGAGCAGTTGA+TGG - chr8.2:7977027-7977046 None:intergenic 45.0%
! TGAGTGATGCCACTAGCTTA+TGG + chr8.2:7977121-7977140 MS.gene24778:intron 45.0%
!! CTGCTTCATCGATTTCTACG+AGG + chr8.2:7976104-7976123 MS.gene24778:CDS 45.0%
!!! GATCGAGTAGTTTTGGTCCT+AGG + chr8.2:7977938-7977957 MS.gene24778:intron 45.0%
AAGCTTACCGTGCCAATGGA+TGG - chr8.2:7977587-7977606 None:intergenic 50.0%
AGGTGATAGCTGTTGGTCCA+GGG + chr8.2:7977997-7978016 MS.gene24778:intron 50.0%
GAGGATAGCCATGACATCTG+AGG - chr8.2:7978147-7978166 None:intergenic 50.0%
GCAGAAGAGAAAACTCAGGG+TGG + chr8.2:7976991-7977010 MS.gene24778:CDS 50.0%
GCCAATGGATGGCTTATCCT+TGG - chr8.2:7977576-7977595 None:intergenic 50.0%
GCCACTAGGTGATAGAGTAC+TGG + chr8.2:7976954-7976973 MS.gene24778:CDS 50.0%
GCTCAATCAAAGCCTCAAGG+GGG + chr8.2:7977033-7977052 MS.gene24778:CDS 50.0%
GCTGAGGAAAAAACTGCTGG+TGG + chr8.2:7977530-7977549 MS.gene24778:CDS 50.0%
GGATAAGCCATCCATTGGCA+CGG + chr8.2:7977577-7977596 MS.gene24778:CDS 50.0%
GGGCAGATCATCAAGACAAC+TGG - chr8.2:7977401-7977420 None:intergenic 50.0%
TACCTTGGGGGTAACAACAG+TGG - chr8.2:7976242-7976261 None:intergenic 50.0%
TTGGAGACGGGAAGACAGTT+GGG + chr8.2:7977070-7977089 MS.gene24778:CDS 50.0%
! AGGTAGTTGCTGTTGGAGAC+GGG + chr8.2:7977058-7977077 MS.gene24778:CDS 50.0%
! GAGGTAGTTGCTGTTGGAGA+CGG + chr8.2:7977057-7977076 MS.gene24778:CDS 50.0%
!! TGCTGGTGGTTTGTTGCTCA+CGG + chr8.2:7977544-7977563 MS.gene24778:CDS 50.0%
ACTAAAGCTCCCGCATACGC+GGG + chr8.2:7976667-7976686 MS.gene24778:intron 55.0%
ATCAAAGCCTCAAGGGGGTG+AGG + chr8.2:7977038-7977057 MS.gene24778:CDS 55.0%
CACTAAAGCTCCCGCATACG+CGG + chr8.2:7976666-7976685 MS.gene24778:intron 55.0%
CAGGTGATAGCTGTTGGTCC+AGG + chr8.2:7977996-7978015 MS.gene24778:intron 55.0%
CTGTTGCCTTCGTCATCCAC+AGG - chr8.2:7978023-7978042 None:intergenic 55.0%
CTTGGGGGTAACAACAGTGG+CGG - chr8.2:7976239-7976258 None:intergenic 55.0%
GTTGCTCACGGAAGCAACCA+AGG + chr8.2:7977556-7977575 MS.gene24778:CDS 55.0%
GTTGGAGACGGGAAGACAGT+TGG + chr8.2:7977069-7977088 MS.gene24778:CDS 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr8.2:7976663-7976682 None:intergenic 55.0%
CGCCACTGTTGTTACCCCCA+AGG + chr8.2:7976237-7976256 MS.gene24778:CDS 60.0%
CTAAAGCTCCCGCATACGCG+GGG + chr8.2:7976668-7976687 MS.gene24778:intron 60.0%
GCAACTACCTCACCCCCTTG+AGG - chr8.2:7977048-7977067 None:intergenic 60.0%
GCTGCAGGTTGCAGAAGCTG+AGG + chr8.2:7977514-7977533 MS.gene24778:intron 60.0%
GGGGGTGAGGTAGTTGCTGT+TGG + chr8.2:7977051-7977070 MS.gene24778:CDS 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr8.2:7976662-7976681 None:intergenic 60.0%
AGCTGTTGGTCCAGGGCCTG+TGG + chr8.2:7978004-7978023 MS.gene24778:CDS 65.0%
CCAGGGCCTGTGGATGACGA+AGG + chr8.2:7978014-7978033 MS.gene24778:CDS 65.0%
CCTTCGTCATCCACAGGCCC+TGG - chr8.2:7978017-7978036 None:intergenic 65.0%
! AATGGTGGGACCCCCCTTCC+CGG - chr8.2:7976695-7976714 None:intergenic 65.0%
ATACGCGGGGTCCGGGAAGG+GGG + chr8.2:7976681-7976700 MS.gene24778:intron 70.0%
CATACGCGGGGTCCGGGAAG+GGG + chr8.2:7976680-7976699 MS.gene24778:intron 70.0%
CTTCCCGGACCCCGCGTATG+CGG - chr8.2:7976680-7976699 None:intergenic 70.0%
GCATACGCGGGGTCCGGGAA+GGG + chr8.2:7976679-7976698 MS.gene24778:intron 70.0%
TTCCCGGACCCCGCGTATGC+GGG - chr8.2:7976679-7976698 None:intergenic 70.0%
CGCATACGCGGGGTCCGGGA+AGG + chr8.2:7976678-7976697 MS.gene24778:intron 75.0%
CTCCCGCATACGCGGGGTCC+GGG + chr8.2:7976674-7976693 MS.gene24778:intron 75.0%
GCTCCCGCATACGCGGGGTC+CGG + chr8.2:7976673-7976692 MS.gene24778:intron 75.0%
TACGCGGGGTCCGGGAAGGG+GGG + chr8.2:7976682-7976701 MS.gene24778:intron 75.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 7976085 7978172 7976085 ID=MS.gene24778
chr8.2 mRNA 7976085 7978172 7976085 ID=MS.gene24778.t1;Parent=MS.gene24778
chr8.2 exon 7976085 7976258 7976085 ID=MS.gene24778.t1.exon1;Parent=MS.gene24778.t1
chr8.2 CDS 7976085 7976258 7976085 ID=cds.MS.gene24778.t1;Parent=MS.gene24778.t1
chr8.2 exon 7976940 7977119 7976940 ID=MS.gene24778.t1.exon2;Parent=MS.gene24778.t1
chr8.2 CDS 7976940 7977119 7976940 ID=cds.MS.gene24778.t1;Parent=MS.gene24778.t1
chr8.2 exon 7977205 7977360 7977205 ID=MS.gene24778.t1.exon3;Parent=MS.gene24778.t1
chr8.2 CDS 7977205 7977360 7977205 ID=cds.MS.gene24778.t1;Parent=MS.gene24778.t1
chr8.2 exon 7977521 7977598 7977521 ID=MS.gene24778.t1.exon4;Parent=MS.gene24778.t1
chr8.2 CDS 7977521 7977598 7977521 ID=cds.MS.gene24778.t1;Parent=MS.gene24778.t1
chr8.2 exon 7977999 7978172 7977999 ID=MS.gene24778.t1.exon5;Parent=MS.gene24778.t1
chr8.2 CDS 7977999 7978172 7977999 ID=cds.MS.gene24778.t1;Parent=MS.gene24778.t1
Gene Sequence

>MS.gene24778

ATGGCGACTACTCAGCTTACTGCTTCATCGATTTCTACGAGGAACCTTTCTTCCTTTGAAGGATTGCGAACTTCCGCAATTCATTTTCCTCGTAACAATGCTAGAATTGGTATTCTTACACAAAGGTCGTTCCCGTCTATTGTTGTTAAAGCCGCCACTGTTGTTACCCCCAAGGTATTATTTTTATTTTTTGGGTCATGGATTTTCTTCATTATCTGCGGCAAAATTATTCTTTTCAGTAGTATATTATGATAAAATAGAGTTAAATTGTTTTTGTATATGCTGCTATAAGTTGTGTTTATAAGCTATCTTGGAGAACTTGCGAAATTAAGTTGAGAAACACTTATGAAAAGTGCCATAAGCTATAAGCTCTTTCAAACACCCACTCAAGTGCATTATGAGATAGTTATCACACAAGTGCATTATCTTACGAGTGCCCCTTAGTATAAGAGAAAATGTACAATTTGTGAGTAGATAGAGAAAGCGAAGCTACAGCGAGAGATCAAAGTAGGAGTTAGAAAGAGTGAAAAATTCATTTGCAACTAAATTTCAGACCAATAAAAAAAAAGGGCAACCCGGTGCACTAAAGCTCCCGCATACGCGGGGTCCGGGAAGGGGGGTCCCACCATTTTTGAATATTTTTCAGACCAATATTTATGAATATTTTTCGTACAGAAGAACATTATCTTTTTATTTCGTAAGCGAAATAGCAGACTATTGATATACATTTCATCTTGAATTAACATGTTCATTGATATACATAAGCCCTGTCCCATGGGATTATTTCTAGTGTTTTTACTTCTACATTTTACAATTCAATGCTGCATGCGCCTTATTAGTAATTTCATCTTGTAGCATACAACTGTCAAGCCACTAGGTGATAGAGTACTGGTAAAAATCAAGGATGCAGAAGAGAAAACTCAGGGTGGAATTTTGCTGCCATCAACTGCTCAATCAAAGCCTCAAGGGGGTGAGGTAGTTGCTGTTGGAGACGGGAAGACAGTTGGGAAGAACAAAGTGGACATTAGTGTGAAGGTGAGTGATGCCACTAGCTTATGGAATCCTTTAAGCCTTGGTCTTTCTTTTATTTTGGATTTATGTAATGTATTTCTCTTTACAGGCAGGTGCACAAGTTGTGTACTCAAAGTATGCAGGAACTGAAGTGGAGTTCAATGGTTCAAAACATCTTATACTGAAGGATGATGACATCGTTGGTATTCTTGAAACCGAAGAGGTCAAAGATCTTAAACCCTTGAATGACAGAGTCTTGATAAAGGTGTGGAACTTTTCTGAGATTTGATTATTTCGATGCTCCAGTTGTCTTGATGATCTGCCCATTTAATTATTTGTCTTAACCATATTTTGCATTAAGGTGTTACGTTTAAAGGCAATATTATATCTGAATATTATACATGCCTTTAATTATGATGCTGCAGGTTGCAGAAGCTGAGGAAAAAACTGCTGGTGGTTTGTTGCTCACGGAAGCAACCAAGGATAAGCCATCCATTGGCACGGTAAGCTTTTCTATTCTCCTTTTTTTGAAACAGTATACTTAAAAAGTAACACCACTCTTCTAAAAGAGGGCAATGTTATATCGTATGAAGGGAAGGTCACAAGAATTGCAAGAATGTGATTTGGGCTGTTTTCAAAAAATTAAAACAATGGATGGTCTGGTGAAAATGAACGCATTAGATACTGTCGTGCATTTAATTTTTGTGTTCCTGTAGCAACTAGCATTATCCCTTAAGACGGTAGAATGTGTTGATGACAGTTTAACTGATGCTTATTTTTATTTATTGCTTTAGCTCAGGTCATTGGTTTGGTTCTTACTTGCTTAGCTGTAACATTGTTTTGATCGAGTAGTTTTGGTCCTAGGTATGTAAATAACCATTCTACTCCTTTTGGATGTAACAGGTGATAGCTGTTGGTCCAGGGCCTGTGGATGACGAAGGCAACAGAAAACCATTATCCATTTCACCCGGGAATACAGTTTTGTACTCCAAATATGCAGGGAATGACTTCAAAGGCAAAGATGGTTCTGACTATATTGCTTTGAGAGCCTCAGATGTCATGGCTATCCTCTCTTAA
Protein sequence

>MS.gene24778.t1

MATTQLTASSISTRNLSSFEGLRTSAIHFPRNNARIGILTQRSFPSIVVKAATVVTPKHTTVKPLGDRVLVKIKDAEEKTQGGILLPSTAQSKPQGGEVVAVGDGKTVGKNKVDISVKAGAQVVYSKYAGTEVEFNGSKHLILKDDDIVGILETEEVKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKDKPSIGTVIAVGPGPVDDEGNRKPLSISPGNTVLYSKYAGNDFKGKDGSDYIALRASDVMAILS