AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24780.t1 MTR_4g124910 95.257 253 12 0 1 253 1 253 1.37e-174 481
MS.gene24780.t1 MTR_2g043230 76.378 254 59 1 1 253 1 254 6.61e-142 398
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24780.t1 AT5G20720 75.294 255 59 2 1 253 1 253 1.20e-135 382
MS.gene24780.t1 AT5G20720 75.294 255 59 2 1 253 1 253 1.20e-135 382
MS.gene24780.t1 AT5G20720 75.294 255 59 2 1 253 1 253 1.20e-135 382
MS.gene24780.t1 AT5G20720 75.294 255 59 2 1 253 1 253 1.20e-135 382

Find 64 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTCATTCCCTGCATATT+TGG 0.259970 8.2:-7938879 None:intergenic
AACTGTATTCCCGGGTGAAA+TGG 0.321202 8.2:-7938849 None:intergenic
CCTCGTAACAATGCTAGAAT+TGG 0.335567 8.2:+7936968 MS.gene24780:CDS
TTCCCGGGTGAAATGGATAA+TGG 0.363835 8.2:-7938842 None:intergenic
TTTAAGATCTTTGACCTCTT+CGG 0.402758 8.2:-7938106 None:intergenic
AGGAACCTTTCTTCCTTTGA+AGG 0.413360 8.2:+7936920 MS.gene24780:CDS
GGAGTACAAAACTGTATTCC+CGG 0.420138 8.2:-7938858 None:intergenic
TATCAAGACTCTGTCATTCA+AGG 0.421253 8.2:-7938130 None:intergenic
CCTTCGTCATCCACAGGCCC+TGG 0.444066 8.2:-7938809 None:intergenic
GGCTTTGATTGAGCAGTTGA+TGG 0.449739 8.2:-7937819 None:intergenic
CTGTTGCCTTCGTCATCCAC+AGG 0.452383 8.2:-7938815 None:intergenic
CAGGTGATAGCTGTTGGTCC+AGG 0.460455 8.2:+7938791 MS.gene24780:intron
GAATGACAGAGTCTTGATAA+AGG 0.473936 8.2:+7938134 MS.gene24780:CDS
TTGGAGACGGGAAGACAGTT+GGG 0.483437 8.2:+7937865 MS.gene24780:CDS
GCAATCCTTCAAAGGAAGAA+AGG 0.496887 8.2:-7936925 None:intergenic
GCCAATGGATGGCTTATCCT+TGG 0.505865 8.2:-7938368 None:intergenic
AATGACTTCAAAGGCAAAGA+TGG 0.508584 8.2:+7938893 MS.gene24780:CDS
GAGGTAGTTGCTGTTGGAGA+CGG 0.521962 8.2:+7937852 MS.gene24780:CDS
GTTGGAGACGGGAAGACAGT+TGG 0.523055 8.2:+7937864 MS.gene24780:CDS
TGCTGGTGGTTTGTTGCTCA+CGG 0.524264 8.2:+7938339 MS.gene24780:CDS
ATCAAGACTCTGTCATTCAA+GGG 0.529761 8.2:-7938129 None:intergenic
CTGCTCAATCAAAGCCTCAA+GGG 0.533192 8.2:+7937826 MS.gene24780:CDS
AGGTAGTTGCTGTTGGAGAC+GGG 0.539082 8.2:+7937853 MS.gene24780:CDS
GCCACTAGGTGATAGAGTAC+TGG 0.539283 8.2:+7937749 MS.gene24780:CDS
AAGCTTACCGTGCCAATGGA+TGG 0.542126 8.2:-7938379 None:intergenic
AGAAAAGCTTACCGTGCCAA+TGG 0.548046 8.2:-7938383 None:intergenic
GGAACTGAAGTGGAGTTCAA+TGG 0.549387 8.2:+7938033 MS.gene24780:CDS
AGCTGTTGGTCCAGGGCCTG+TGG 0.552111 8.2:+7938799 MS.gene24780:CDS
GGAAGTTCGCAATCCTTCAA+AGG 0.561777 8.2:-7936933 None:intergenic
GCGGCTTTAACAACAATAGA+CGG 0.565089 8.2:-7937013 None:intergenic
TTCAAAACATCTTATACTGA+AGG 0.568271 8.2:+7938056 MS.gene24780:CDS
CATACAACTGTCAAGCCACT+AGG 0.568378 8.2:+7937735 MS.gene24780:CDS
ACCAAGGATAAGCCATCCAT+TGG 0.568643 8.2:+7938367 MS.gene24780:CDS
TATGCAGGGAATGACTTCAA+AGG 0.569312 8.2:+7938884 MS.gene24780:CDS
TTTGAGAGCCTCAGATGTCA+TGG 0.571249 8.2:+7938931 MS.gene24780:CDS
GAGTACAAAACTGTATTCCC+GGG 0.572521 8.2:-7938857 None:intergenic
CTGAAGGATGATGACATCGT+TGG 0.572824 8.2:+7938072 MS.gene24780:CDS
TGCTCAATCAAAGCCTCAAG+GGG 0.578517 8.2:+7937827 MS.gene24780:CDS
AGGTGATAGCTGTTGGTCCA+GGG 0.579593 8.2:+7938792 MS.gene24780:intron
AAAGTATGCAGGAACTGAAG+TGG 0.581171 8.2:+7938023 MS.gene24780:CDS
ACTGCTCAATCAAAGCCTCA+AGG 0.582194 8.2:+7937825 MS.gene24780:CDS
GTTGTGTACTCAAAGTATGC+AGG 0.590902 8.2:+7938012 MS.gene24780:CDS
AAACCATTATCCATTTCACC+CGG 0.592297 8.2:+7938839 MS.gene24780:CDS
CGGCTTTAACAACAATAGAC+GGG 0.595648 8.2:-7937012 None:intergenic
GGATGCAGAAGAGAAAACTC+AGG 0.597980 8.2:+7937782 MS.gene24780:CDS
ACCAGTACTCTATCACCTAG+TGG 0.604909 8.2:-7937750 None:intergenic
CAAAGTGGACATTAGTGTGA+AGG 0.607471 8.2:+7937893 MS.gene24780:CDS
GAATTGGTATTCTTACACAA+AGG 0.614844 8.2:+7936984 MS.gene24780:CDS
CCAGGGCCTGTGGATGACGA+AGG 0.620963 8.2:+7938809 MS.gene24780:CDS
AAAATAGCCAAAATTAAGAG+AGG 0.622578 8.2:-7938958 None:intergenic
GTTGCTCACGGAAGCAACCA+AGG 0.626344 8.2:+7938351 MS.gene24780:CDS
GAGGATAGCCATGACATCTG+AGG 0.634831 8.2:-7938939 None:intergenic
CCAATTCTAGCATTGTTACG+AGG 0.641555 8.2:-7936968 None:intergenic
AACCATTATCCATTTCACCC+GGG 0.641591 8.2:+7938840 MS.gene24780:CDS
GTTACGAGGAAAATGAATTG+CGG 0.642882 8.2:-7936954 None:intergenic
GGATAAGCCATCCATTGGCA+CGG 0.647992 8.2:+7938372 MS.gene24780:CDS
CTGCTTCATCGATTTCTACG+AGG 0.656045 8.2:+7936900 MS.gene24780:CDS
TGGTATTCTTGAAACCGAAG+AGG 0.662324 8.2:+7938092 MS.gene24780:CDS
GCTGCAGGTTGCAGAAGCTG+AGG 0.680718 8.2:+7938309 MS.gene24780:intron
GATGCAGAAGAGAAAACTCA+GGG 0.684794 8.2:+7937783 MS.gene24780:CDS
ATGTAACAGGTGATAGCTGT+TGG 0.691284 8.2:+7938785 MS.gene24780:intron
GACAGTTGGGAAGAACAAAG+TGG 0.692016 8.2:+7937878 MS.gene24780:CDS
GCAGAAGAGAAAACTCAGGG+TGG 0.728959 8.2:+7937786 MS.gene24780:CDS
GCTCAATCAAAGCCTCAAGG+GGG 0.730531 8.2:+7937828 MS.gene24780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAAAATAATACCT+TGG - chr8.2:7937053-7937072 None:intergenic 10.0%
!! AAAAATAAAAATAATACCTT+GGG - chr8.2:7937052-7937071 None:intergenic 10.0%
!!! AAGGTATTATTTTTATTTTT+TGG + chr8.2:7937052-7937071 MS.gene24780:intron 10.0%
!!! AGGTATTATTTTTATTTTTT+GGG + chr8.2:7937053-7937072 MS.gene24780:intron 10.0%
!!! TTTTCAAAAAATTAAAACAA+TGG + chr8.2:7938522-7938541 MS.gene24780:intron 10.0%
!! AAAATAAAAATAATACCTTG+GGG - chr8.2:7937051-7937070 None:intergenic 15.0%
!! CGAAAAATATTCATAAATAT+TGG - chr8.2:7937530-7937549 None:intergenic 15.0%
!! GTTAAGACAAATAATTAAAT+GGG - chr8.2:7938216-7938235 None:intergenic 15.0%
!! AAATAAAAATAATACCTTGG+GGG - chr8.2:7937050-7937069 None:intergenic 20.0%
!! AAGTATACTGTTTCAAAAAA+AGG - chr8.2:7938414-7938433 None:intergenic 20.0%
!! ACAAGATGAAATTACTAATA+AGG - chr8.2:7937713-7937732 None:intergenic 20.0%
!! CAAAAAATTAAAACAATGGA+TGG + chr8.2:7938526-7938545 MS.gene24780:intron 20.0%
!! GAAAAATATTCAAAAATGGT+GGG - chr8.2:7937504-7937523 None:intergenic 20.0%
!! GGTTAAGACAAATAATTAAA+TGG - chr8.2:7938217-7938236 None:intergenic 20.0%
!! GTCTGAAAAATATTCAAAAA+TGG - chr8.2:7937508-7937527 None:intergenic 20.0%
!! TGAAAAATATTCAAAAATGG+TGG - chr8.2:7937505-7937524 None:intergenic 20.0%
!! TTCAGACCAATAAAAAAAAA+GGG + chr8.2:7937429-7937448 MS.gene24780:intron 20.0%
!! TTTCAGACCAATAAAAAAAA+AGG + chr8.2:7937428-7937447 MS.gene24780:intron 20.0%
!!! TACATTTTCTCTTATACTAA+GGG - chr8.2:7937321-7937340 None:intergenic 20.0%
!!! TATTTTTATTTTTTGGGTCA+TGG + chr8.2:7937059-7937078 MS.gene24780:intron 20.0%
! TAACACCTTAATGCAAAATA+TGG - chr8.2:7938238-7938257 None:intergenic 25.0%
! TGTAATGTATTTCTCTTTAC+AGG + chr8.2:7937978-7937997 MS.gene24780:intron 25.0%
! TTCAAAACATCTTATACTGA+AGG + chr8.2:7938056-7938075 MS.gene24780:CDS 25.0%
!! ACATTTTCTCTTATACTAAG+GGG - chr8.2:7937320-7937339 None:intergenic 25.0%
!! CTTAACCATATTTTGCATTA+AGG + chr8.2:7938230-7938249 MS.gene24780:intron 25.0%
!! GTACATTTTCTCTTATACTA+AGG - chr8.2:7937322-7937341 None:intergenic 25.0%
!! TTTATTTATTGCTTTAGCTC+AGG + chr8.2:7938668-7938687 MS.gene24780:intron 25.0%
AAACACTAGAAATAATCCCA+TGG - chr8.2:7937655-7937674 None:intergenic 30.0%
AACACTAGAAATAATCCCAT+GGG - chr8.2:7937654-7937673 None:intergenic 30.0%
AATAAAAAAAAAGGGCAACC+CGG + chr8.2:7937437-7937456 MS.gene24780:intron 30.0%
AATTAAAACAATGGATGGTC+TGG + chr8.2:7938531-7938550 MS.gene24780:intron 30.0%
AGAATTGCAAGAATGTGATT+TGG + chr8.2:7938495-7938514 MS.gene24780:intron 30.0%
CCAAAATAAAAGAAAGACCA+AGG - chr8.2:7937953-7937972 None:intergenic 30.0%
GAATGGTTATTTACATACCT+AGG - chr8.2:7938753-7938772 None:intergenic 30.0%
GAATTGCAAGAATGTGATTT+GGG + chr8.2:7938496-7938515 MS.gene24780:intron 30.0%
GAATTGGTATTCTTACACAA+AGG + chr8.2:7936984-7937003 MS.gene24780:CDS 30.0%
GCAATGTTATATCGTATGAA+GGG + chr8.2:7938463-7938482 MS.gene24780:intron 30.0%
GTTGTGTTTATAAGCTATCT+TGG + chr8.2:7937172-7937191 MS.gene24780:intron 30.0%
TTGAAAGAGCTTATAGCTTA+TGG - chr8.2:7937239-7937258 None:intergenic 30.0%
! AATAACCATTCTACTCCTTT+TGG + chr8.2:7938762-7938781 MS.gene24780:intron 30.0%
! CATTAAGGTGTTACGTTTAA+AGG + chr8.2:7938245-7938264 MS.gene24780:intron 30.0%
! TGGATTTTCTTCATTATCTG+CGG + chr8.2:7937079-7937098 MS.gene24780:intron 30.0%
! TTTAAGATCTTTGACCTCTT+CGG - chr8.2:7938109-7938128 None:intergenic 30.0%
! TTTTGTACTCCAAATATGCA+GGG + chr8.2:7938870-7938889 MS.gene24780:CDS 30.0%
!! CCTTGGTCTTTCTTTTATTT+TGG + chr8.2:7937950-7937969 MS.gene24780:intron 30.0%
!! TAGAGTACTGGTAAAAATCA+AGG + chr8.2:7937761-7937780 MS.gene24780:CDS 30.0%
!!! TTGTTTTGATCGAGTAGTTT+TGG + chr8.2:7938726-7938745 MS.gene24780:intron 30.0%
AAACCATTATCCATTTCACC+CGG + chr8.2:7938839-7938858 MS.gene24780:CDS 35.0%
AAAGAAAGACCAAGGCTTAA+AGG - chr8.2:7937945-7937964 None:intergenic 35.0%
AACACATTCTACCGTCTTAA+GGG - chr8.2:7938623-7938642 None:intergenic 35.0%
AATGACTTCAAAGGCAAAGA+TGG + chr8.2:7938893-7938912 MS.gene24780:CDS 35.0%
ACCTGCAGCATCATAATTAA+AGG - chr8.2:7938298-7938317 None:intergenic 35.0%
ACTAGCATTATCCCTTAAGA+CGG + chr8.2:7938609-7938628 MS.gene24780:intron 35.0%
ATCAAGACTCTGTCATTCAA+GGG - chr8.2:7938132-7938151 None:intergenic 35.0%
ATCTCATAATGCACTTGAGT+GGG - chr8.2:7937265-7937284 None:intergenic 35.0%
ATGTATTTCTCTTTACAGGC+AGG + chr8.2:7937982-7938001 MS.gene24780:intron 35.0%
GAATGACAGAGTCTTGATAA+AGG + chr8.2:7938134-7938153 MS.gene24780:CDS 35.0%
GGCAATGTTATATCGTATGA+AGG + chr8.2:7938462-7938481 MS.gene24780:intron 35.0%
GTTACGAGGAAAATGAATTG+CGG - chr8.2:7936957-7936976 None:intergenic 35.0%
TAAAGGATTCCATAAGCTAG+TGG - chr8.2:7937928-7937947 None:intergenic 35.0%
TACATCCAAAAGGAGTAGAA+TGG - chr8.2:7938770-7938789 None:intergenic 35.0%
TATCAAGACTCTGTCATTCA+AGG - chr8.2:7938133-7938152 None:intergenic 35.0%
TATCACCTGTTACATCCAAA+AGG - chr8.2:7938780-7938799 None:intergenic 35.0%
TATCTCATAATGCACTTGAG+TGG - chr8.2:7937266-7937285 None:intergenic 35.0%
TGTTATATCGTATGAAGGGA+AGG + chr8.2:7938467-7938486 MS.gene24780:intron 35.0%
TTATGGAATCCTTTAAGCCT+TGG + chr8.2:7937933-7937952 MS.gene24780:intron 35.0%
! AACACCACTCTTCTAAAAGA+GGG + chr8.2:7938441-7938460 MS.gene24780:intron 35.0%
! GTTTTGTACTCCAAATATGC+AGG + chr8.2:7938869-7938888 MS.gene24780:CDS 35.0%
! TAACACCACTCTTCTAAAAG+AGG + chr8.2:7938440-7938459 MS.gene24780:intron 35.0%
!!! GGGTTGCCCTTTTTTTTTAT+TGG - chr8.2:7937438-7937457 None:intergenic 35.0%
AAAGTATGCAGGAACTGAAG+TGG + chr8.2:7938023-7938042 MS.gene24780:CDS 40.0%
AACCATTATCCATTTCACCC+GGG + chr8.2:7938840-7938859 MS.gene24780:CDS 40.0%
ACAGAGTCTTGATAAAGGTG+TGG + chr8.2:7938139-7938158 MS.gene24780:intron 40.0%
AGAAATAATCCCATGGGACA+GGG - chr8.2:7937648-7937667 None:intergenic 40.0%
AGGAACCTTTCTTCCTTTGA+AGG + chr8.2:7936920-7936939 MS.gene24780:CDS 40.0%
ATGTAACAGGTGATAGCTGT+TGG + chr8.2:7938785-7938804 MS.gene24780:intron 40.0%
CAAAGTGGACATTAGTGTGA+AGG + chr8.2:7937893-7937912 MS.gene24780:CDS 40.0%
CAACACATTCTACCGTCTTA+AGG - chr8.2:7938624-7938643 None:intergenic 40.0%
CCAATTCTAGCATTGTTACG+AGG - chr8.2:7936971-7936990 None:intergenic 40.0%
CCTCGTAACAATGCTAGAAT+TGG + chr8.2:7936968-7936987 MS.gene24780:CDS 40.0%
GAAGTCATTCCCTGCATATT+TGG - chr8.2:7938882-7938901 None:intergenic 40.0%
GAGTACAAAACTGTATTCCC+GGG - chr8.2:7938860-7938879 None:intergenic 40.0%
GATGCAGAAGAGAAAACTCA+GGG + chr8.2:7937783-7937802 MS.gene24780:CDS 40.0%
GCAATCCTTCAAAGGAAGAA+AGG - chr8.2:7936928-7936947 None:intergenic 40.0%
GCCTTTAATTATGATGCTGC+AGG + chr8.2:7938294-7938313 MS.gene24780:intron 40.0%
GGAGTACAAAACTGTATTCC+CGG - chr8.2:7938861-7938880 None:intergenic 40.0%
GTTGTGTACTCAAAGTATGC+AGG + chr8.2:7938012-7938031 MS.gene24780:CDS 40.0%
TAGAAATAATCCCATGGGAC+AGG - chr8.2:7937649-7937668 None:intergenic 40.0%
TATGCAGGGAATGACTTCAA+AGG + chr8.2:7938884-7938903 MS.gene24780:CDS 40.0%
TGGTATTCTTGAAACCGAAG+AGG + chr8.2:7938092-7938111 MS.gene24780:CDS 40.0%
! ATTGCTTTAGCTCAGGTCAT+TGG + chr8.2:7938675-7938694 MS.gene24780:intron 40.0%
! CGGCTTTAACAACAATAGAC+GGG - chr8.2:7937015-7937034 None:intergenic 40.0%
! CTACTCCTTTTGGATGTAAC+AGG + chr8.2:7938772-7938791 MS.gene24780:intron 40.0%
! GCGGCTTTAACAACAATAGA+CGG - chr8.2:7937016-7937035 None:intergenic 40.0%
! TTTAGCTCAGGTCATTGGTT+TGG + chr8.2:7938680-7938699 MS.gene24780:intron 40.0%
!! ATTGCCCTCTTTTAGAAGAG+TGG - chr8.2:7938448-7938467 None:intergenic 40.0%
AACTGTATTCCCGGGTGAAA+TGG - chr8.2:7938852-7938871 None:intergenic 45.0%
ACCAAGGATAAGCCATCCAT+TGG + chr8.2:7938367-7938386 MS.gene24780:CDS 45.0%
ACCAGTACTCTATCACCTAG+TGG - chr8.2:7937753-7937772 None:intergenic 45.0%
ACTGCTCAATCAAAGCCTCA+AGG + chr8.2:7937825-7937844 MS.gene24780:CDS 45.0%
AGAAAAGCTTACCGTGCCAA+TGG - chr8.2:7938386-7938405 None:intergenic 45.0%
ATACATAAGCCCTGTCCCAT+GGG + chr8.2:7937636-7937655 MS.gene24780:intron 45.0%
CATACAACTGTCAAGCCACT+AGG + chr8.2:7937735-7937754 MS.gene24780:CDS 45.0%
CTACAGCGAGAGATCAAAGT+AGG + chr8.2:7937370-7937389 MS.gene24780:intron 45.0%
CTGAAGGATGATGACATCGT+TGG + chr8.2:7938072-7938091 MS.gene24780:CDS 45.0%
CTGCTCAATCAAAGCCTCAA+GGG + chr8.2:7937826-7937845 MS.gene24780:CDS 45.0%
GAAGCTGAGGAAAAAACTGC+TGG + chr8.2:7938322-7938341 MS.gene24780:CDS 45.0%
GACAGTTGGGAAGAACAAAG+TGG + chr8.2:7937878-7937897 MS.gene24780:CDS 45.0%
GGAACTGAAGTGGAGTTCAA+TGG + chr8.2:7938033-7938052 MS.gene24780:CDS 45.0%
GGAAGTTCGCAATCCTTCAA+AGG - chr8.2:7936936-7936955 None:intergenic 45.0%
GGATGCAGAAGAGAAAACTC+AGG + chr8.2:7937782-7937801 MS.gene24780:CDS 45.0%
GGGATAATGCTAGTTGCTAC+AGG - chr8.2:7938603-7938622 None:intergenic 45.0%
TATACATAAGCCCTGTCCCA+TGG + chr8.2:7937635-7937654 MS.gene24780:intron 45.0%
TGCTCAATCAAAGCCTCAAG+GGG + chr8.2:7937827-7937846 MS.gene24780:CDS 45.0%
TTCCCGGGTGAAATGGATAA+TGG - chr8.2:7938845-7938864 None:intergenic 45.0%
TTTGAGAGCCTCAGATGTCA+TGG + chr8.2:7938931-7938950 MS.gene24780:CDS 45.0%
! GGCTTTGATTGAGCAGTTGA+TGG - chr8.2:7937822-7937841 None:intergenic 45.0%
! TGAGTGATGCCACTAGCTTA+TGG + chr8.2:7937916-7937935 MS.gene24780:intron 45.0%
!! CTGCTTCATCGATTTCTACG+AGG + chr8.2:7936900-7936919 MS.gene24780:CDS 45.0%
!!! GATCGAGTAGTTTTGGTCCT+AGG + chr8.2:7938733-7938752 MS.gene24780:intron 45.0%
AAGCTTACCGTGCCAATGGA+TGG - chr8.2:7938382-7938401 None:intergenic 50.0%
AGGTGATAGCTGTTGGTCCA+GGG + chr8.2:7938792-7938811 MS.gene24780:intron 50.0%
GAGGATAGCCATGACATCTG+AGG - chr8.2:7938942-7938961 None:intergenic 50.0%
GCAGAAGAGAAAACTCAGGG+TGG + chr8.2:7937786-7937805 MS.gene24780:CDS 50.0%
GCCAATGGATGGCTTATCCT+TGG - chr8.2:7938371-7938390 None:intergenic 50.0%
GCCACTAGGTGATAGAGTAC+TGG + chr8.2:7937749-7937768 MS.gene24780:CDS 50.0%
GCTCAATCAAAGCCTCAAGG+GGG + chr8.2:7937828-7937847 MS.gene24780:CDS 50.0%
GCTGAGGAAAAAACTGCTGG+TGG + chr8.2:7938325-7938344 MS.gene24780:CDS 50.0%
GGATAAGCCATCCATTGGCA+CGG + chr8.2:7938372-7938391 MS.gene24780:CDS 50.0%
GGGCAGATCATCAAGACAAC+TGG - chr8.2:7938196-7938215 None:intergenic 50.0%
TACCTTGGGGGTAACAACAG+TGG - chr8.2:7937038-7937057 None:intergenic 50.0%
TTGGAGACGGGAAGACAGTT+GGG + chr8.2:7937865-7937884 MS.gene24780:CDS 50.0%
! AGGTAGTTGCTGTTGGAGAC+GGG + chr8.2:7937853-7937872 MS.gene24780:CDS 50.0%
! GAGGTAGTTGCTGTTGGAGA+CGG + chr8.2:7937852-7937871 MS.gene24780:CDS 50.0%
!! TGCTGGTGGTTTGTTGCTCA+CGG + chr8.2:7938339-7938358 MS.gene24780:CDS 50.0%
ACTAAAGCTCCCGCATACGC+GGG + chr8.2:7937463-7937482 MS.gene24780:intron 55.0%
ATCAAAGCCTCAAGGGGGTG+AGG + chr8.2:7937833-7937852 MS.gene24780:CDS 55.0%
CACTAAAGCTCCCGCATACG+CGG + chr8.2:7937462-7937481 MS.gene24780:intron 55.0%
CAGGTGATAGCTGTTGGTCC+AGG + chr8.2:7938791-7938810 MS.gene24780:intron 55.0%
CTGTTGCCTTCGTCATCCAC+AGG - chr8.2:7938818-7938837 None:intergenic 55.0%
CTTGGGGGTAACAACAGTGG+CGG - chr8.2:7937035-7937054 None:intergenic 55.0%
GTTGCTCACGGAAGCAACCA+AGG + chr8.2:7938351-7938370 MS.gene24780:CDS 55.0%
GTTGGAGACGGGAAGACAGT+TGG + chr8.2:7937864-7937883 MS.gene24780:CDS 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr8.2:7937459-7937478 None:intergenic 55.0%
CGCCACTGTTGTTACCCCCA+AGG + chr8.2:7937033-7937052 MS.gene24780:CDS 60.0%
CTAAAGCTCCCGCATACGCG+GGG + chr8.2:7937464-7937483 MS.gene24780:intron 60.0%
GCAACTACCTCACCCCCTTG+AGG - chr8.2:7937843-7937862 None:intergenic 60.0%
GCTGCAGGTTGCAGAAGCTG+AGG + chr8.2:7938309-7938328 MS.gene24780:intron 60.0%
GGGGGTGAGGTAGTTGCTGT+TGG + chr8.2:7937846-7937865 MS.gene24780:CDS 60.0%
! AAATGGTGGGACCCCCTTCC+CGG - chr8.2:7937491-7937510 None:intergenic 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr8.2:7937458-7937477 None:intergenic 60.0%
AGCTGTTGGTCCAGGGCCTG+TGG + chr8.2:7938799-7938818 MS.gene24780:CDS 65.0%
CCAGGGCCTGTGGATGACGA+AGG + chr8.2:7938809-7938828 MS.gene24780:CDS 65.0%
CCTTCGTCATCCACAGGCCC+TGG - chr8.2:7938812-7938831 None:intergenic 65.0%
ATACGCGGGGTCCGGGAAGG+GGG + chr8.2:7937477-7937496 MS.gene24780:intron 70.0%
CATACGCGGGGTCCGGGAAG+GGG + chr8.2:7937476-7937495 MS.gene24780:intron 70.0%
CTTCCCGGACCCCGCGTATG+CGG - chr8.2:7937476-7937495 None:intergenic 70.0%
GCATACGCGGGGTCCGGGAA+GGG + chr8.2:7937475-7937494 MS.gene24780:intron 70.0%
TTCCCGGACCCCGCGTATGC+GGG - chr8.2:7937475-7937494 None:intergenic 70.0%
CGCATACGCGGGGTCCGGGA+AGG + chr8.2:7937474-7937493 MS.gene24780:intron 75.0%
CTCCCGCATACGCGGGGTCC+GGG + chr8.2:7937470-7937489 MS.gene24780:intron 75.0%
GCTCCCGCATACGCGGGGTC+CGG + chr8.2:7937469-7937488 MS.gene24780:intron 75.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 7936881 7938967 7936881 ID=MS.gene24780
chr8.2 mRNA 7936881 7938967 7936881 ID=MS.gene24780.t1;Parent=MS.gene24780
chr8.2 exon 7936881 7937054 7936881 ID=MS.gene24780.t1.exon1;Parent=MS.gene24780.t1
chr8.2 CDS 7936881 7937054 7936881 ID=cds.MS.gene24780.t1;Parent=MS.gene24780.t1
chr8.2 exon 7937735 7937914 7937735 ID=MS.gene24780.t1.exon2;Parent=MS.gene24780.t1
chr8.2 CDS 7937735 7937914 7937735 ID=cds.MS.gene24780.t1;Parent=MS.gene24780.t1
chr8.2 exon 7938000 7938155 7938000 ID=MS.gene24780.t1.exon3;Parent=MS.gene24780.t1
chr8.2 CDS 7938000 7938155 7938000 ID=cds.MS.gene24780.t1;Parent=MS.gene24780.t1
chr8.2 exon 7938316 7938393 7938316 ID=MS.gene24780.t1.exon4;Parent=MS.gene24780.t1
chr8.2 CDS 7938316 7938393 7938316 ID=cds.MS.gene24780.t1;Parent=MS.gene24780.t1
chr8.2 exon 7938794 7938967 7938794 ID=MS.gene24780.t1.exon5;Parent=MS.gene24780.t1
chr8.2 CDS 7938794 7938967 7938794 ID=cds.MS.gene24780.t1;Parent=MS.gene24780.t1
Gene Sequence

>MS.gene24780

ATGGCGACTACTCAGCTTACTGCTTCATCGATTTCTACGAGGAACCTTTCTTCCTTTGAAGGATTGCGAACTTCCGCAATTCATTTTCCTCGTAACAATGCTAGAATTGGTATTCTTACACAAAGGTCGTTCCCGTCTATTGTTGTTAAAGCCGCCACTGTTGTTACCCCCAAGGTATTATTTTTATTTTTTGGGTCATGGATTTTCTTCATTATCTGCGGCAAAATTATTCTTTTCAGTAGTATATTATGATAAAATAGAGTTAAATTGTTTTTGTATATGCTGCTATAAGTTGTGTTTATAAGCTATCTTGGAGAACTTGCGAAATTAAGTTGAGAAACACTTATGAAAAGTGCCATAAGCTATAAGCTCTTTCAAACACCCACTCAAGTGCATTATGAGATAGTTATCACACAAGTGCATTATCTTACGAGTGCCCCTTAGTATAAGAGAAAATGTACAATTTGTGAGTAGATAGAGAAAGCGAAGCTACAGCGAGAGATCAAAGTAGGAGTTAGAAAGAGTGAAAAATTCATTTGCAACTAAATTTCAGACCAATAAAAAAAAAGGGCAACCCGGTGCACTAAAGCTCCCGCATACGCGGGGTCCGGGAAGGGGGTCCCACCATTTTTGAATATTTTTCAGACCAATATTTATGAATATTTTTCGTACAGAAGAACATTATCTTTTTATTTCGTAAGCGAAATAGCAGACTATTGATATACATTTCATCTTGAATTAACATGTTCATTGATATACATAAGCCCTGTCCCATGGGATTATTTCTAGTGTTTTTACTTCTACATTTTACAATTCAATGCTGCATGCGCCTTATTAGTAATTTCATCTTGTAGCATACAACTGTCAAGCCACTAGGTGATAGAGTACTGGTAAAAATCAAGGATGCAGAAGAGAAAACTCAGGGTGGAATTTTGCTGCCATCAACTGCTCAATCAAAGCCTCAAGGGGGTGAGGTAGTTGCTGTTGGAGACGGGAAGACAGTTGGGAAGAACAAAGTGGACATTAGTGTGAAGGTGAGTGATGCCACTAGCTTATGGAATCCTTTAAGCCTTGGTCTTTCTTTTATTTTGGATTTATGTAATGTATTTCTCTTTACAGGCAGGTGCACAAGTTGTGTACTCAAAGTATGCAGGAACTGAAGTGGAGTTCAATGGTTCAAAACATCTTATACTGAAGGATGATGACATCGTTGGTATTCTTGAAACCGAAGAGGTCAAAGATCTTAAACCCTTGAATGACAGAGTCTTGATAAAGGTGTGGAACTTTTCTGAGATTTGATTATTTCGATGCTCCAGTTGTCTTGATGATCTGCCCATTTAATTATTTGTCTTAACCATATTTTGCATTAAGGTGTTACGTTTAAAGGCAATATTATATCTGAATATTATACATGCCTTTAATTATGATGCTGCAGGTTGCAGAAGCTGAGGAAAAAACTGCTGGTGGTTTGTTGCTCACGGAAGCAACCAAGGATAAGCCATCCATTGGCACGGTAAGCTTTTCTATTCTCCTTTTTTTGAAACAGTATACTTAAAAAGTAACACCACTCTTCTAAAAGAGGGCAATGTTATATCGTATGAAGGGAAGGTCACAAGAATTGCAAGAATGTGATTTGGGCTGTTTTCAAAAAATTAAAACAATGGATGGTCTGGTGAAAATGAACGCATTAGATACTGTCGTGCATTTAATTTTTGTGTTCCTGTAGCAACTAGCATTATCCCTTAAGACGGTAGAATGTGTTGATGACAGTTTAACTGATGCTTATTTTTATTTATTGCTTTAGCTCAGGTCATTGGTTTGGTTCTTACTTGCTTAGCTGTAACATTGTTTTGATCGAGTAGTTTTGGTCCTAGGTATGTAAATAACCATTCTACTCCTTTTGGATGTAACAGGTGATAGCTGTTGGTCCAGGGCCTGTGGATGACGAAGGCAACAGAAAACCATTATCCATTTCACCCGGGAATACAGTTTTGTACTCCAAATATGCAGGGAATGACTTCAAAGGCAAAGATGGTTCTGACTATATTGCTTTGAGAGCCTCAGATGTCATGGCTATCCTCTCTTAA
Protein sequence

>MS.gene24780.t1

MATTQLTASSISTRNLSSFEGLRTSAIHFPRNNARIGILTQRSFPSIVVKAATVVTPKHTTVKPLGDRVLVKIKDAEEKTQGGILLPSTAQSKPQGGEVVAVGDGKTVGKNKVDISVKAGAQVVYSKYAGTEVEFNGSKHLILKDDDIVGILETEEVKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKDKPSIGTVIAVGPGPVDDEGNRKPLSISPGNTVLYSKYAGNDFKGKDGSDYIALRASDVMAILS