Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24824.t1 | XP_013458413.1 | 85.5 | 537 | 77 | 1 | 30 | 566 | 152 | 687 | 1.60E-245 | 858.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24824.t1 | Q8BH70 | 29.5 | 149 | 101 | 3 | 377 | 523 | 369 | 515 | 5.0e-09 | 64.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24824.t1 | A0A072URM6 | 85.5 | 537 | 77 | 1 | 30 | 566 | 152 | 687 | 1.2e-245 | 858.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene24824 | 0.838773 | 2.36E-57 | -1.69E-46 |
| MS.gene049499 | MS.gene24824 | 0.835628 | 1.50E-56 | -1.69E-46 |
| MS.gene049983 | MS.gene24824 | 0.820763 | 5.78E-53 | -1.69E-46 |
| MS.gene050414 | MS.gene24824 | 0.80057 | 1.35E-48 | -1.69E-46 |
| MS.gene051541 | MS.gene24824 | 0.816109 | 6.55E-52 | -1.69E-46 |
| MS.gene051821 | MS.gene24824 | 0.94817 | 1.60E-106 | -1.69E-46 |
| MS.gene051823 | MS.gene24824 | 0.921769 | 2.34E-88 | -1.69E-46 |
| MS.gene052016 | MS.gene24824 | 0.817542 | 3.12E-52 | -1.69E-46 |
| MS.gene052040 | MS.gene24824 | 0.803857 | 2.85E-49 | -1.69E-46 |
| MS.gene052118 | MS.gene24824 | 0.806835 | 6.78E-50 | -1.69E-46 |
| MS.gene053726 | MS.gene24824 | 0.834823 | 2.40E-56 | -1.69E-46 |
| MS.gene054641 | MS.gene24824 | 0.830511 | 2.82E-55 | -1.69E-46 |
| MS.gene054892 | MS.gene24824 | 0.846159 | 2.59E-59 | -1.69E-46 |
| MS.gene054893 | MS.gene24824 | 0.847962 | 8.30E-60 | -1.69E-46 |
| MS.gene054957 | MS.gene24824 | 0.802192 | 6.30E-49 | -1.69E-46 |
| MS.gene055803 | MS.gene24824 | 0.832126 | 1.13E-55 | -1.69E-46 |
| MS.gene05624 | MS.gene24824 | 0.816197 | 6.26E-52 | -1.69E-46 |
| MS.gene057155 | MS.gene24824 | 0.807292 | 5.43E-50 | -1.69E-46 |
| MS.gene057622 | MS.gene24824 | 0.817331 | 3.48E-52 | -1.69E-46 |
| MS.gene058429 | MS.gene24824 | 0.828678 | 7.87E-55 | -1.69E-46 |
| MS.gene05952 | MS.gene24824 | 0.807052 | 6.10E-50 | -1.69E-46 |
| MS.gene060435 | MS.gene24824 | 0.806617 | 7.54E-50 | -1.69E-46 |
| MS.gene060522 | MS.gene24824 | 0.813384 | 2.63E-51 | -1.69E-46 |
| MS.gene060850 | MS.gene24824 | 0.817643 | 2.96E-52 | -1.69E-46 |
| MS.gene060851 | MS.gene24824 | 0.811942 | 5.44E-51 | -1.69E-46 |
| MS.gene060852 | MS.gene24824 | 0.811836 | 5.74E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 97 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAACATTGACTTAGATTTA+TGG | 0.211918 | 8.1:+6837267 | None:intergenic |
| TTGTTAAGGAATCCTTTATT+TGG | 0.218045 | 8.1:-6838022 | MS.gene24824:CDS |
| CTCTTGATCTTATGAACTTA+TGG | 0.218689 | 8.1:-6836696 | MS.gene24824:CDS |
| AAATCAAATTTCATTGGATT+TGG | 0.235626 | 8.1:-6838351 | MS.gene24824:CDS |
| TTTGGTGAAGGGAAGGTTTA+GGG | 0.277701 | 8.1:-6837976 | MS.gene24824:CDS |
| AATATTCTGGCTGATTCATT+AGG | 0.302835 | 8.1:-6837223 | MS.gene24824:CDS |
| GCTTGCCGTCTTACTGATAA+GGG | 0.308427 | 8.1:-6837328 | MS.gene24824:CDS |
| TGTTAAGGAATCCTTTATTT+GGG | 0.315948 | 8.1:-6838021 | MS.gene24824:CDS |
| ATTTGGTGAAGGGAAGGTTT+AGG | 0.331229 | 8.1:-6837977 | MS.gene24824:CDS |
| CTCGATCTGCAGAAATTTGA+CGG | 0.337852 | 8.1:-6836764 | MS.gene24824:intron |
| ACCTCTGCCGCAATCCATTC+AGG | 0.343022 | 8.1:-6836612 | MS.gene24824:intron |
| GAAAAGGAACGGAGAAGATT+TGG | 0.343662 | 8.1:-6837994 | MS.gene24824:CDS |
| AACTTAGAGATTCAGATCAT+TGG | 0.344333 | 8.1:-6835354 | MS.gene24824:CDS |
| GTGGGTTTCCTACTCATATT+CGG | 0.345183 | 8.1:-6837797 | MS.gene24824:CDS |
| AGCTGAAAATCAAATTTCAT+TGG | 0.352025 | 8.1:-6838357 | MS.gene24824:CDS |
| GAAGAATTCACTAAATGTTT+CGG | 0.369076 | 8.1:-6837747 | MS.gene24824:CDS |
| AATTTGACAGACAATGAGTT+TGG | 0.369880 | 8.1:-6835576 | MS.gene24824:CDS |
| GATGGAATGGTTTCACTTGA+TGG | 0.377697 | 8.1:-6837906 | MS.gene24824:CDS |
| GGTTTCACTTGATGGTGTTT+CGG | 0.380171 | 8.1:-6837898 | MS.gene24824:CDS |
| TGCTTGCCGTCTTACTGATA+AGG | 0.380416 | 8.1:-6837329 | MS.gene24824:CDS |
| ATATGCTAGTCTTAATATTC+TGG | 0.383480 | 8.1:-6837236 | MS.gene24824:CDS |
| AAATTGACCGATTTAACTAT+AGG | 0.383538 | 8.1:-6836673 | MS.gene24824:CDS |
| TAATGTACATACCTCTAGTA+TGG | 0.392894 | 8.1:+6837710 | None:intergenic |
| AGAGACATTTCTTGCAAAGA+AGG | 0.395958 | 8.1:+6837951 | None:intergenic |
| TCTTTGATATGCTGCAATAA+AGG | 0.396565 | 8.1:+6835318 | None:intergenic |
| ACTTAGAGATTCAGATCATT+GGG | 0.413780 | 8.1:-6835353 | MS.gene24824:CDS |
| AAGTTCTTCCAAGGATTTGC+CGG | 0.415989 | 8.1:+6836149 | None:intergenic |
| CACTAAATGTTTCGGAATGT+TGG | 0.424026 | 8.1:-6837739 | MS.gene24824:CDS |
| TGATAAGGGGTTGCAGCTAC+TGG | 0.429928 | 8.1:-6837314 | MS.gene24824:CDS |
| AAGATATCCTATAGTTAAAT+CGG | 0.432326 | 8.1:+6836666 | None:intergenic |
| ACCTGAATGGATTGCGGCAG+AGG | 0.435528 | 8.1:+6836611 | None:intergenic |
| TCGACACCATGACAGATCTA+AGG | 0.436932 | 8.1:+6835599 | None:intergenic |
| GCTTTGATTGCTTCAGAGAA+AGG | 0.436946 | 8.1:+6838083 | None:intergenic |
| TGCATGTGGTCAGAATATTA+AGG | 0.440998 | 8.1:-6837050 | MS.gene24824:CDS |
| CCTTTATTTGGGTTCCGAAA+AGG | 0.447400 | 8.1:-6838010 | MS.gene24824:CDS |
| TAACGCAGAGCGCCTTGGTT+AGG | 0.449476 | 8.1:+6835288 | None:intergenic |
| TGATGCTGCACTAATCTTGT+CGG | 0.450638 | 8.1:-6837158 | MS.gene24824:CDS |
| TTCACTTAACAACATTAAGA+AGG | 0.453409 | 8.1:-6836127 | MS.gene24824:intron |
| AGAGCGCCTTGGTTAGGATT+AGG | 0.461086 | 8.1:+6835294 | None:intergenic |
| TGCATTGTTTGCAAGTGATA+AGG | 0.463961 | 8.1:+6835635 | None:intergenic |
| ACGTGTCAATTCGTAGAAAT+CGG | 0.472613 | 8.1:-6838253 | MS.gene24824:CDS |
| TTCGGCTTAAAGATTGCTCC+TGG | 0.473844 | 8.1:-6837779 | MS.gene24824:CDS |
| GGAGATGACCGGCAAATCCT+TGG | 0.478721 | 8.1:-6836157 | MS.gene24824:CDS |
| AGATCAAGAGCCTGCAGTCC+GGG | 0.489304 | 8.1:+6836709 | None:intergenic |
| ATTGCTTCAGAGAAAGGTGT+TGG | 0.491476 | 8.1:+6838089 | None:intergenic |
| CAATGAGTTTGGTTTAATTG+TGG | 0.494252 | 8.1:-6835565 | MS.gene24824:CDS |
| TGGATAGCTGTTTGTCGCTA+AGG | 0.496627 | 8.1:-6835545 | MS.gene24824:CDS |
| TGCTAACCATGCTGATGGAA+TGG | 0.498656 | 8.1:-6837919 | MS.gene24824:CDS |
| ACATGAAATTGACGATAACT+TGG | 0.501090 | 8.1:-6838141 | MS.gene24824:CDS |
| ATTCTTGCTAACCATGCTGA+TGG | 0.505214 | 8.1:-6837924 | MS.gene24824:CDS |
| CAAACAAAGGCTTAGCGCAT+TGG | 0.507209 | 8.1:-6837868 | MS.gene24824:CDS |
| ATATACATTACTTTCTACAT+TGG | 0.509772 | 8.1:-6837401 | MS.gene24824:CDS |
| GTTAAGTGAAAGTTCTTCCA+AGG | 0.510904 | 8.1:+6836140 | None:intergenic |
| TACACACTGTCCCGGACTGC+AGG | 0.511413 | 8.1:-6836719 | MS.gene24824:CDS |
| AAGATCAAGAGCCTGCAGTC+CGG | 0.512184 | 8.1:+6836708 | None:intergenic |
| ATGAATAACGCAGAGCGCCT+TGG | 0.517875 | 8.1:+6835283 | None:intergenic |
| TTCTTGAACTACTTCTAAGT+GGG | 0.518300 | 8.1:-6837815 | MS.gene24824:CDS |
| TTTCTTGAACTACTTCTAAG+TGG | 0.520179 | 8.1:-6837816 | MS.gene24824:CDS |
| ATAAACTTATCACAAACAGT+TGG | 0.520326 | 8.1:+6837088 | None:intergenic |
| AACGGAGAAGATTTGGTGAA+GGG | 0.523277 | 8.1:-6837987 | MS.gene24824:CDS |
| AAAACAAGAGACCACCTGAA+TGG | 0.533318 | 8.1:+6836598 | None:intergenic |
| GTCATTGCTACACACTGTCC+CGG | 0.537095 | 8.1:-6836727 | MS.gene24824:CDS |
| TTAGAAGTGTTATCACTAGC+TGG | 0.543668 | 8.1:-6837115 | MS.gene24824:CDS |
| GAGAAGATTTGGTGAAGGGA+AGG | 0.547684 | 8.1:-6837983 | MS.gene24824:CDS |
| TTGATTAGTCTATCCCTCAC+TGG | 0.552362 | 8.1:-6837352 | MS.gene24824:CDS |
| TGCATACCTTAGATCTGTCA+TGG | 0.558362 | 8.1:-6835605 | MS.gene24824:CDS |
| AAGACTAGCATATGTGAGAA+GGG | 0.561550 | 8.1:+6837246 | None:intergenic |
| TAAGACTAGCATATGTGAGA+AGG | 0.562795 | 8.1:+6837245 | None:intergenic |
| ATCAATCTAGACAAGCAGCT+TGG | 0.566575 | 8.1:+6837370 | None:intergenic |
| CATGAAGTTGATGCTGATGA+TGG | 0.568513 | 8.1:-6838116 | MS.gene24824:CDS |
| GAATTCTTCCTCTGTCAACC+AGG | 0.572099 | 8.1:+6837761 | None:intergenic |
| ATTTGGGTTCCGAAAAGGAA+CGG | 0.581845 | 8.1:-6838005 | MS.gene24824:CDS |
| GAACGGAGAAGATTTGGTGA+AGG | 0.582661 | 8.1:-6837988 | MS.gene24824:CDS |
| CAATTCGTAGAAATCGGTAC+AGG | 0.584763 | 8.1:-6838247 | MS.gene24824:CDS |
| TGATGAAGATGATCAGAGGA+AGG | 0.587981 | 8.1:-6838384 | MS.gene24824:CDS |
| TCTTTAAGCCGAATATGAGT+AGG | 0.588830 | 8.1:+6837789 | None:intergenic |
| TTTCGGATGAGCTCAAACAA+AGG | 0.594265 | 8.1:-6837881 | MS.gene24824:CDS |
| TTATCATCATCATCAATGAG+TGG | 0.602880 | 8.1:+6838440 | None:intergenic |
| CTTGCCGTCTTACTGATAAG+GGG | 0.612726 | 8.1:-6837327 | MS.gene24824:CDS |
| AAGACGGCAAGCACCAGTGA+GGG | 0.627353 | 8.1:+6837339 | None:intergenic |
| CAAGTGATAAGGTTGTCTGT+TGG | 0.628327 | 8.1:+6835646 | None:intergenic |
| CTGTTATAACTCGTCCACAC+TGG | 0.634753 | 8.1:+6837425 | None:intergenic |
| GTGAAACCATTCCATCAGCA+TGG | 0.636782 | 8.1:+6837913 | None:intergenic |
| GCAACCCCTTATCAGTAAGA+CGG | 0.637906 | 8.1:+6837323 | None:intergenic |
| GTTGGACACTTCCATACTAG+AGG | 0.638302 | 8.1:-6837721 | MS.gene24824:intron |
| GTGATGATGAAGATGATCAG+AGG | 0.644752 | 8.1:-6838388 | MS.gene24824:CDS |
| AAGAGTTACATCATTGCATG+TGG | 0.660843 | 8.1:-6837064 | MS.gene24824:CDS |
| AAAGAGCCTAATCCTAACCA+AGG | 0.660986 | 8.1:-6835300 | MS.gene24824:CDS |
| AGATTGCTCCTGGTTGACAG+AGG | 0.662635 | 8.1:-6837769 | MS.gene24824:CDS |
| ACTGAAACTAATGATAGCGA+TGG | 0.669764 | 8.1:-6838299 | MS.gene24824:CDS |
| GAGACCACCTGAATGGATTG+CGG | 0.672864 | 8.1:+6836605 | None:intergenic |
| TGAAGATGATCATCATGCGG+CGG | 0.676628 | 8.1:-6838165 | MS.gene24824:CDS |
| ATTTCTACGAATTGACACGT+TGG | 0.678256 | 8.1:+6838256 | None:intergenic |
| TAAGACGGCAAGCACCAGTG+AGG | 0.700208 | 8.1:+6837338 | None:intergenic |
| GAATGAAGATGATCATCATG+CGG | 0.700277 | 8.1:-6838168 | MS.gene24824:CDS |
| ATCACTGTCACTGATAACGA+TGG | 0.706586 | 8.1:+6838406 | None:intergenic |
| GTGCTGCAACTTGACCAGTG+TGG | 0.740382 | 8.1:-6837439 | MS.gene24824:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTATATAAGTAAAGT+TGG | - | chr8.1:6837854-6837873 | MS.gene24824:CDS | 10.0% |
| !!! | AAATATTTTCACAAAGTAAA+CGG | + | chr8.1:6836798-6836817 | None:intergenic | 15.0% |
| !!! | ATATTTTTTATTACTATGGT+CGG | - | chr8.1:6836247-6836266 | MS.gene24824:intron | 15.0% |
| !!! | GATGATATTTTTTATTACTA+TGG | - | chr8.1:6836243-6836262 | MS.gene24824:intron | 15.0% |
| !! | AAATATGACTATAATTTAGC+TGG | + | chr8.1:6838017-6838036 | None:intergenic | 20.0% |
| !! | AAATCAAATTTCATTGGATT+TGG | - | chr8.1:6835378-6835397 | MS.gene24824:CDS | 20.0% |
| !! | AAGATATCCTATAGTTAAAT+CGG | + | chr8.1:6837066-6837085 | None:intergenic | 20.0% |
| !! | ATATACATTACTTTCTACAT+TGG | - | chr8.1:6836328-6836347 | MS.gene24824:intron | 20.0% |
| !! | ATGTGATAATATATTAGGAT+TGG | - | chr8.1:6837238-6837257 | MS.gene24824:CDS | 20.0% |
| !! | CGTTTATGTGATAATATATT+AGG | - | chr8.1:6837233-6837252 | MS.gene24824:CDS | 20.0% |
| !! | TGGTAATAAGATATATAGAA+TGG | + | chr8.1:6837418-6837437 | None:intergenic | 20.0% |
| !!! | AAAGAAATTAGTTGATTTGT+TGG | - | chr8.1:6838292-6838311 | MS.gene24824:CDS | 20.0% |
| !!! | ACTATATCATTTTGTTTTCA+AGG | - | chr8.1:6837381-6837400 | MS.gene24824:CDS | 20.0% |
| !!! | TTGTGTGAATATATTTTAGT+TGG | - | chr8.1:6836210-6836229 | MS.gene24824:intron | 20.0% |
| ! | AAAATTGTAACATGTTGTCA+AGG | - | chr8.1:6837706-6837725 | MS.gene24824:intron | 25.0% |
| ! | AAACTTATCATTTCGTCTAT+TGG | - | chr8.1:6836933-6836952 | MS.gene24824:intron | 25.0% |
| ! | AAGTTAAGTTATTCAGCAAT+TGG | + | chr8.1:6837514-6837533 | None:intergenic | 25.0% |
| ! | AGATAAACTATCATAAGAGT+TGG | + | chr8.1:6837829-6837848 | None:intergenic | 25.0% |
| ! | AGCTGAAAATCAAATTTCAT+TGG | - | chr8.1:6835372-6835391 | MS.gene24824:CDS | 25.0% |
| ! | ATAAAAGACATATGAATGAC+AGG | + | chr8.1:6836178-6836197 | None:intergenic | 25.0% |
| ! | ATAAACTTATCACAAACAGT+TGG | + | chr8.1:6836644-6836663 | None:intergenic | 25.0% |
| ! | GAAGAATTCACTAAATGTTT+CGG | - | chr8.1:6835982-6836001 | MS.gene24824:intron | 25.0% |
| ! | TACTTGTTTCATATAGCATT+TGG | - | chr8.1:6836046-6836065 | MS.gene24824:intron | 25.0% |
| ! | TTATTCAGCAATTGGAATTT+AGG | + | chr8.1:6837506-6837525 | None:intergenic | 25.0% |
| ! | TTCACTTAACAACATTAAGA+AGG | - | chr8.1:6837602-6837621 | MS.gene24824:intron | 25.0% |
| ! | TTGTTAAGGAATCCTTTATT+TGG | - | chr8.1:6835707-6835726 | MS.gene24824:intron | 25.0% |
| !! | AAATTGACCGATTTAACTAT+AGG | - | chr8.1:6837056-6837075 | MS.gene24824:CDS | 25.0% |
| !! | GAAATTCTAGCACAAATTTT+AGG | + | chr8.1:6836834-6836853 | None:intergenic | 25.0% |
| !! | GAATATTGATTAGCTATTTG+AGG | - | chr8.1:6837943-6837962 | MS.gene24824:CDS | 25.0% |
| !! | GAGTATTGCTATTATATGTA+TGG | - | chr8.1:6837263-6837282 | MS.gene24824:CDS | 25.0% |
| !! | GTAACAAATGTTTTTCTCAA+CGG | - | chr8.1:6838345-6838364 | MS.gene24824:CDS | 25.0% |
| !! | TAACAAATGTTTTTCTCAAC+GGG | - | chr8.1:6838346-6838365 | MS.gene24824:CDS | 25.0% |
| !! | TGTTAAGGAATCCTTTATTT+GGG | - | chr8.1:6835708-6835727 | MS.gene24824:intron | 25.0% |
| !! | TTGCTATTATATGTATGGAT+TGG | - | chr8.1:6837268-6837287 | MS.gene24824:CDS | 25.0% |
| !! | TTTAACATTTGGTTTAATCC+AGG | - | chr8.1:6838056-6838075 | MS.gene24824:CDS | 25.0% |
| !!! | ATATGCTAGTCTTAATATTC+TGG | - | chr8.1:6836493-6836512 | MS.gene24824:intron | 25.0% |
| !!! | ATTATATGTATGGATTGGTA+TGG | - | chr8.1:6837273-6837292 | MS.gene24824:CDS | 25.0% |
| !!! | ATTTTGTTTTCAAGGTTTTG+AGG | - | chr8.1:6837389-6837408 | MS.gene24824:CDS | 25.0% |
| !!! | GTAATTTCTAGCTTTTTAGT+AGG | - | chr8.1:6837202-6837221 | MS.gene24824:CDS | 25.0% |
| !!! | TAATTTTTCTAGTTCGAGAA+TGG | + | chr8.1:6837356-6837375 | None:intergenic | 25.0% |
| !!! | TTTTAAGTGAGTTATTGTGA+TGG | - | chr8.1:6836878-6836897 | MS.gene24824:intron | 25.0% |
| !!! | TTTTGAGTGTCTTTAACATT+TGG | - | chr8.1:6838045-6838064 | MS.gene24824:CDS | 25.0% |
| AACTTAGAGATTCAGATCAT+TGG | - | chr8.1:6838375-6838394 | MS.gene24824:CDS | 30.0% | |
| AATTTGACAGACAATGAGTT+TGG | - | chr8.1:6838153-6838172 | MS.gene24824:CDS | 30.0% | |
| ACATATGAATGACAGGAATT+TGG | + | chr8.1:6836171-6836190 | None:intergenic | 30.0% | |
| ACATGAAATTGACGATAACT+TGG | - | chr8.1:6835588-6835607 | MS.gene24824:CDS | 30.0% | |
| ACTTAGAGATTCAGATCATT+GGG | - | chr8.1:6838376-6838395 | MS.gene24824:CDS | 30.0% | |
| ATTGCCAAAAGCAAGAAAAA+AGG | - | chr8.1:6835682-6835701 | MS.gene24824:intron | 30.0% | |
| ATTGTTCGATCTTGATCAAA+TGG | - | chr8.1:6836110-6836129 | MS.gene24824:intron | 30.0% | |
| CTCTTGATCTTATGAACTTA+TGG | - | chr8.1:6837033-6837052 | MS.gene24824:CDS | 30.0% | |
| GCTAGAATTTCTTGTTAACA+AGG | - | chr8.1:6836843-6836862 | MS.gene24824:intron | 30.0% | |
| GGAACATTTATTTGTGGAAT+AGG | - | chr8.1:6836268-6836287 | MS.gene24824:intron | 30.0% | |
| TAATGTACATACCTCTAGTA+TGG | + | chr8.1:6836022-6836041 | None:intergenic | 30.0% | |
| TCTTTGATATGCTGCAATAA+AGG | + | chr8.1:6838414-6838433 | None:intergenic | 30.0% | |
| TTATCATCATCATCAATGAG+TGG | + | chr8.1:6835292-6835311 | None:intergenic | 30.0% | |
| TTCTTGAACTACTTCTAAGT+GGG | - | chr8.1:6835914-6835933 | MS.gene24824:intron | 30.0% | |
| TTGAATGTTACTACTATTGC+AGG | - | chr8.1:6838323-6838342 | MS.gene24824:CDS | 30.0% | |
| TTGCCAAAAGCAAGAAAAAA+GGG | - | chr8.1:6835683-6835702 | MS.gene24824:intron | 30.0% | |
| TTTCTTGAACTACTTCTAAG+TGG | - | chr8.1:6835913-6835932 | MS.gene24824:intron | 30.0% | |
| ! | AATATTCTGGCTGATTCATT+AGG | - | chr8.1:6836506-6836525 | MS.gene24824:intron | 30.0% |
| ! | CAATGAGTTTGGTTTAATTG+TGG | - | chr8.1:6838164-6838183 | MS.gene24824:CDS | 30.0% |
| ! | CTAAGGTCACTTAAACTTTT+CGG | - | chr8.1:6838201-6838220 | MS.gene24824:CDS | 30.0% |
| ! | TCCTTAGTCTTTCATTCTTA+AGG | - | chr8.1:6836770-6836789 | MS.gene24824:intron | 30.0% |
| !! | GGAACATTGACTTAGATTTA+TGG | + | chr8.1:6836465-6836484 | None:intergenic | 30.0% |
| !!! | TGGTATGGATTTTTTGCATT+TGG | - | chr8.1:6837288-6837307 | MS.gene24824:CDS | 30.0% |
| !!! | TTTTTTGCATTTGGAATGTC+AGG | - | chr8.1:6837297-6837316 | MS.gene24824:CDS | 30.0% |
| AAGACTAGCATATGTGAGAA+GGG | + | chr8.1:6836486-6836505 | None:intergenic | 35.0% | |
| AAGAGTTACATCATTGCATG+TGG | - | chr8.1:6836665-6836684 | MS.gene24824:CDS | 35.0% | |
| ACGTGTCAATTCGTAGAAAT+CGG | - | chr8.1:6835476-6835495 | MS.gene24824:intron | 35.0% | |
| AGAGACATTTCTTGCAAAGA+AGG | + | chr8.1:6835781-6835800 | None:intergenic | 35.0% | |
| ATGGTCGGAACATTTATTTG+TGG | - | chr8.1:6836262-6836281 | MS.gene24824:intron | 35.0% | |
| ATTTCTACGAATTGACACGT+TGG | + | chr8.1:6835476-6835495 | None:intergenic | 35.0% | |
| CAAGAAAAAAGGGGTTGTTA+AGG | - | chr8.1:6835693-6835712 | MS.gene24824:intron | 35.0% | |
| CACTAAATGTTTCGGAATGT+TGG | - | chr8.1:6835990-6836009 | MS.gene24824:intron | 35.0% | |
| GAATGAAGATGATCATCATG+CGG | - | chr8.1:6835561-6835580 | MS.gene24824:CDS | 35.0% | |
| GATCTGGTTGAAACTTAGAT+TGG | - | chr8.1:6837753-6837772 | MS.gene24824:CDS | 35.0% | |
| GCCTTAAGAATGAAAGACTA+AGG | + | chr8.1:6836774-6836793 | None:intergenic | 35.0% | |
| GTCAGGAATATTTCTTCATG+TGG | - | chr8.1:6837314-6837333 | MS.gene24824:CDS | 35.0% | |
| GTTAAGTGAAAGTTCTTCCA+AGG | + | chr8.1:6837592-6837611 | None:intergenic | 35.0% | |
| TAAGACTAGCATATGTGAGA+AGG | + | chr8.1:6836487-6836506 | None:intergenic | 35.0% | |
| TCTTTAAGCCGAATATGAGT+AGG | + | chr8.1:6835943-6835962 | None:intergenic | 35.0% | |
| TGCATGTGGTCAGAATATTA+AGG | - | chr8.1:6836679-6836698 | MS.gene24824:CDS | 35.0% | |
| TGCATTGTTTGCAAGTGATA+AGG | + | chr8.1:6838097-6838116 | None:intergenic | 35.0% | |
| TGCCAAAAGCAAGAAAAAAG+GGG | - | chr8.1:6835684-6835703 | MS.gene24824:intron | 35.0% | |
| TGCTTATGAAAGGATTGATC+TGG | - | chr8.1:6837737-6837756 | MS.gene24824:CDS | 35.0% | |
| ! | AAATCTTCTCCGTTCCTTTT+CGG | + | chr8.1:6835736-6835755 | None:intergenic | 35.0% |
| ! | ACATTTGGTTTAATCCAGGT+TGG | - | chr8.1:6838060-6838079 | MS.gene24824:CDS | 35.0% |
| ! | ACTGAAACTAATGATAGCGA+TGG | - | chr8.1:6835430-6835449 | MS.gene24824:intron | 35.0% |
| ! | TAAACTTTTCGGATGTTCAC+AGG | - | chr8.1:6838212-6838231 | MS.gene24824:CDS | 35.0% |
| !! | GTGATTTGTTCTACTGTTTG+TGG | - | chr8.1:6837893-6837912 | MS.gene24824:CDS | 35.0% |
| !! | TTAGAAGTGTTATCACTAGC+TGG | - | chr8.1:6836614-6836633 | MS.gene24824:CDS | 35.0% |
| !!! | AACCCCTTTTTTCTTGCTTT+TGG | + | chr8.1:6835689-6835708 | None:intergenic | 35.0% |
| !!! | TGAAGCAATTGCTGCTTTTT+TGG | - | chr8.1:6837551-6837570 | MS.gene24824:intron | 35.0% |
| AAAACAAGAGACCACCTGAA+TGG | + | chr8.1:6837134-6837153 | None:intergenic | 40.0% | |
| AAAGAGCCTAATCCTAACCA+AGG | - | chr8.1:6838429-6838448 | MS.gene24824:CDS | 40.0% | |
| AAGTTCTTCCAAGGATTTGC+CGG | + | chr8.1:6837583-6837602 | None:intergenic | 40.0% | |
| AGGTTAATGTTTCCGCTATC+TGG | - | chr8.1:6837963-6837982 | MS.gene24824:CDS | 40.0% | |
| ATCAATCTAGACAAGCAGCT+TGG | + | chr8.1:6836362-6836381 | None:intergenic | 40.0% | |
| ATTCTTGCTAACCATGCTGA+TGG | - | chr8.1:6835805-6835824 | MS.gene24824:intron | 40.0% | |
| CAAGTGATAAGGTTGTCTGT+TGG | + | chr8.1:6838086-6838105 | None:intergenic | 40.0% | |
| CAATTCGTAGAAATCGGTAC+AGG | - | chr8.1:6835482-6835501 | MS.gene24824:intron | 40.0% | |
| CTCGATCTGCAGAAATTTGA+CGG | - | chr8.1:6836965-6836984 | MS.gene24824:intron | 40.0% | |
| CTTGCCAAATGTCTCTCAAT+TGG | - | chr8.1:6837643-6837662 | MS.gene24824:intron | 40.0% | |
| GAAAAGGAACGGAGAAGATT+TGG | - | chr8.1:6835735-6835754 | MS.gene24824:intron | 40.0% | |
| GATGGAATGGTTTCACTTGA+TGG | - | chr8.1:6835823-6835842 | MS.gene24824:intron | 40.0% | |
| GCTAACTGAAAACCAGATAG+CGG | + | chr8.1:6837978-6837997 | None:intergenic | 40.0% | |
| GCTTTGATTGCTTCAGAGAA+AGG | + | chr8.1:6835649-6835668 | None:intergenic | 40.0% | |
| GGACAGATCATGATTACATG+CGG | + | chr8.1:6837485-6837504 | None:intergenic | 40.0% | |
| GTGGGTTTCCTACTCATATT+CGG | - | chr8.1:6835932-6835951 | MS.gene24824:intron | 40.0% | |
| TGATGAAGATGATCAGAGGA+AGG | - | chr8.1:6835345-6835364 | MS.gene24824:CDS | 40.0% | |
| TGATGCTGCACTAATCTTGT+CGG | - | chr8.1:6836571-6836590 | MS.gene24824:intron | 40.0% | |
| TGCATACCTTAGATCTGTCA+TGG | - | chr8.1:6838124-6838143 | MS.gene24824:CDS | 40.0% | |
| TTTCGGATGAGCTCAAACAA+AGG | - | chr8.1:6835848-6835867 | MS.gene24824:intron | 40.0% | |
| TTTGGTGAAGGGAAGGTTTA+GGG | - | chr8.1:6835753-6835772 | MS.gene24824:intron | 40.0% | |
| ! | ATCACTGTCACTGATAACGA+TGG | + | chr8.1:6835326-6835345 | None:intergenic | 40.0% |
| ! | ATTGCTTCAGAGAAAGGTGT+TGG | + | chr8.1:6835643-6835662 | None:intergenic | 40.0% |
| ! | ATTTGGGTTCCGAAAAGGAA+CGG | - | chr8.1:6835724-6835743 | MS.gene24824:intron | 40.0% |
| ! | ATTTGGTGAAGGGAAGGTTT+AGG | - | chr8.1:6835752-6835771 | MS.gene24824:intron | 40.0% |
| ! | CCTTTATTTGGGTTCCGAAA+AGG | - | chr8.1:6835719-6835738 | MS.gene24824:intron | 40.0% |
| ! | CCTTTTCGGAACCCAAATAA+AGG | + | chr8.1:6835722-6835741 | None:intergenic | 40.0% |
| ! | GTGATGATGAAGATGATCAG+AGG | - | chr8.1:6835341-6835360 | MS.gene24824:CDS | 40.0% |
| !! | AACGGAGAAGATTTGGTGAA+GGG | - | chr8.1:6835742-6835761 | MS.gene24824:intron | 40.0% |
| !! | CATGAAGTTGATGCTGATGA+TGG | - | chr8.1:6835613-6835632 | MS.gene24824:CDS | 40.0% |
| !! | GGTTTCACTTGATGGTGTTT+CGG | - | chr8.1:6835831-6835850 | MS.gene24824:intron | 40.0% |
| !! | TTGATTAGTCTATCCCTCAC+TGG | - | chr8.1:6836377-6836396 | MS.gene24824:intron | 40.0% |
| CAAACAAAGGCTTAGCGCAT+TGG | - | chr8.1:6835861-6835880 | MS.gene24824:intron | 45.0% | |
| CGAGCCAATTGAGAGACATT+TGG | + | chr8.1:6837650-6837669 | None:intergenic | 45.0% | |
| CTGTTATAACTCGTCCACAC+TGG | + | chr8.1:6836307-6836326 | None:intergenic | 45.0% | |
| CTTGCCGTCTTACTGATAAG+GGG | - | chr8.1:6836402-6836421 | MS.gene24824:intron | 45.0% | |
| GAATTCTTCCTCTGTCAACC+AGG | + | chr8.1:6835971-6835990 | None:intergenic | 45.0% | |
| GACACAATGCAGACGATACT+TGG | + | chr8.1:6837438-6837457 | None:intergenic | 45.0% | |
| GCAACCCCTTATCAGTAAGA+CGG | + | chr8.1:6836409-6836428 | None:intergenic | 45.0% | |
| GCTTGCCGTCTTACTGATAA+GGG | - | chr8.1:6836401-6836420 | MS.gene24824:intron | 45.0% | |
| GGCTTCTCTGTGCTTATGAA+AGG | - | chr8.1:6837727-6837746 | MS.gene24824:CDS | 45.0% | |
| GTGAAACCATTCCATCAGCA+TGG | + | chr8.1:6835819-6835838 | None:intergenic | 45.0% | |
| GTTGGACACTTCCATACTAG+AGG | - | chr8.1:6836008-6836027 | MS.gene24824:intron | 45.0% | |
| TCGACACCATGACAGATCTA+AGG | + | chr8.1:6838133-6838152 | None:intergenic | 45.0% | |
| TGAAGATGATCATCATGCGG+CGG | - | chr8.1:6835564-6835583 | MS.gene24824:CDS | 45.0% | |
| TGCTAACCATGCTGATGGAA+TGG | - | chr8.1:6835810-6835829 | MS.gene24824:intron | 45.0% | |
| TGCTTGCCGTCTTACTGATA+AGG | - | chr8.1:6836400-6836419 | MS.gene24824:intron | 45.0% | |
| TGGATAGCTGTTTGTCGCTA+AGG | - | chr8.1:6838184-6838203 | MS.gene24824:CDS | 45.0% | |
| TTCGGCTTAAAGATTGCTCC+TGG | - | chr8.1:6835950-6835969 | MS.gene24824:intron | 45.0% | |
| !! | GAACGGAGAAGATTTGGTGA+AGG | - | chr8.1:6835741-6835760 | MS.gene24824:intron | 45.0% |
| !! | GAGAAGATTTGGTGAAGGGA+AGG | - | chr8.1:6835746-6835765 | MS.gene24824:intron | 45.0% |
| !!! | GCTGCTTTTTTGGAGATGAC+CGG | - | chr8.1:6837561-6837580 | MS.gene24824:intron | 45.0% |
| AAGATCAAGAGCCTGCAGTC+CGG | + | chr8.1:6837024-6837043 | None:intergenic | 50.0% | |
| AGATTGCTCCTGGTTGACAG+AGG | - | chr8.1:6835960-6835979 | MS.gene24824:intron | 50.0% | |
| GTCATTGCTACACACTGTCC+CGG | - | chr8.1:6837002-6837021 | MS.gene24824:intron | 50.0% | |
| GTGCGTACAGTCAGCTACAT+CGG | + | chr8.1:6836139-6836158 | None:intergenic | 50.0% | |
| TGATAAGGGGTTGCAGCTAC+TGG | - | chr8.1:6836415-6836434 | MS.gene24824:intron | 50.0% | |
| ! | AGAGCGCCTTGGTTAGGATT+AGG | + | chr8.1:6838438-6838457 | None:intergenic | 50.0% |
| ! | ATGAATAACGCAGAGCGCCT+TGG | + | chr8.1:6838449-6838468 | None:intergenic | 50.0% |
| !! | GAGACCACCTGAATGGATTG+CGG | + | chr8.1:6837127-6837146 | None:intergenic | 50.0% |
| AAGACGGCAAGCACCAGTGA+GGG | + | chr8.1:6836393-6836412 | None:intergenic | 55.0% | |
| ACCTCTGCCGCAATCCATTC+AGG | - | chr8.1:6837117-6837136 | MS.gene24824:CDS | 55.0% | |
| AGATCAAGAGCCTGCAGTCC+GGG | + | chr8.1:6837023-6837042 | None:intergenic | 55.0% | |
| AGGTTGTCTGTTGGCCAACC+TGG | + | chr8.1:6838077-6838096 | None:intergenic | 55.0% | |
| CGTACAGTCAGCTACATCGG+TGG | + | chr8.1:6836136-6836155 | None:intergenic | 55.0% | |
| GGAGATGACCGGCAAATCCT+TGG | - | chr8.1:6837572-6837591 | MS.gene24824:intron | 55.0% | |
| GTGCTGCAACTTGACCAGTG+TGG | - | chr8.1:6836290-6836309 | MS.gene24824:intron | 55.0% | |
| TAAGACGGCAAGCACCAGTG+AGG | + | chr8.1:6836394-6836413 | None:intergenic | 55.0% | |
| TCTGCCGCAATCCATTCAGG+TGG | - | chr8.1:6837120-6837139 | MS.gene24824:CDS | 55.0% | |
| ! | TAACGCAGAGCGCCTTGGTT+AGG | + | chr8.1:6838444-6838463 | None:intergenic | 55.0% |
| !! | ACCTGAATGGATTGCGGCAG+AGG | + | chr8.1:6837121-6837140 | None:intergenic | 55.0% |
| TACACACTGTCCCGGACTGC+AGG | - | chr8.1:6837010-6837029 | MS.gene24824:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 6835281 | 6838470 | 6835281 | ID=MS.gene24824 |
| chr8.1 | mRNA | 6835281 | 6838470 | 6835281 | ID=MS.gene24824.t1;Parent=MS.gene24824 |
| chr8.1 | exon | 6837722 | 6838470 | 6837722 | ID=MS.gene24824.t1.exon1;Parent=MS.gene24824.t1 |
| chr8.1 | CDS | 6837722 | 6838470 | 6837722 | ID=cds.MS.gene24824.t1;Parent=MS.gene24824.t1 |
| chr8.1 | exon | 6837028 | 6837461 | 6837028 | ID=MS.gene24824.t1.exon2;Parent=MS.gene24824.t1 |
| chr8.1 | CDS | 6837028 | 6837461 | 6837028 | ID=cds.MS.gene24824.t1;Parent=MS.gene24824.t1 |
| chr8.1 | exon | 6836613 | 6836774 | 6836613 | ID=MS.gene24824.t1.exon3;Parent=MS.gene24824.t1 |
| chr8.1 | CDS | 6836613 | 6836774 | 6836613 | ID=cds.MS.gene24824.t1;Parent=MS.gene24824.t1 |
| chr8.1 | exon | 6836128 | 6836203 | 6836128 | ID=MS.gene24824.t1.exon4;Parent=MS.gene24824.t1 |
| chr8.1 | CDS | 6836128 | 6836203 | 6836128 | ID=cds.MS.gene24824.t1;Parent=MS.gene24824.t1 |
| chr8.1 | exon | 6835518 | 6835673 | 6835518 | ID=MS.gene24824.t1.exon5;Parent=MS.gene24824.t1 |
| chr8.1 | CDS | 6835518 | 6835673 | 6835518 | ID=cds.MS.gene24824.t1;Parent=MS.gene24824.t1 |
| chr8.1 | exon | 6835281 | 6835406 | 6835281 | ID=MS.gene24824.t1.exon6;Parent=MS.gene24824.t1 |
| chr8.1 | CDS | 6835281 | 6835406 | 6835281 | ID=cds.MS.gene24824.t1;Parent=MS.gene24824.t1 |
| Gene Sequence |
| Protein sequence |
