Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25670.t1 | XP_013450336.1 | 96.9 | 384 | 11 | 1 | 1 | 383 | 1 | 384 | 8.80E-219 | 769.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25670.t1 | Q9FVQ0 | 47.1 | 382 | 201 | 1 | 3 | 383 | 2 | 383 | 8.6e-106 | 385.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25670.t1 | A0A072U3T1 | 96.9 | 384 | 11 | 1 | 1 | 383 | 1 | 384 | 6.3e-219 | 769.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049757 | MS.gene25670 | 0.810938 | 8.99E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene25670 | 0.828754 | 7.54E-55 | -1.69E-46 |
| MS.gene050971 | MS.gene25670 | 0.817632 | 2.98E-52 | -1.69E-46 |
| MS.gene051521 | MS.gene25670 | 0.864651 | 1.04E-64 | -1.69E-46 |
| MS.gene052414 | MS.gene25670 | 0.80552 | 1.28E-49 | -1.69E-46 |
| MS.gene053169 | MS.gene25670 | 0.811329 | 7.39E-51 | -1.69E-46 |
| MS.gene05316 | MS.gene25670 | 0.827627 | 1.41E-54 | -1.69E-46 |
| MS.gene053889 | MS.gene25670 | 0.815324 | 9.80E-52 | -1.69E-46 |
| MS.gene053912 | MS.gene25670 | 0.802653 | 5.07E-49 | -1.69E-46 |
| MS.gene054183 | MS.gene25670 | 0.810801 | 9.62E-51 | -1.69E-46 |
| MS.gene054556 | MS.gene25670 | 0.80834 | 3.25E-50 | -1.69E-46 |
| MS.gene054742 | MS.gene25670 | -0.801466 | 8.89E-49 | -1.69E-46 |
| MS.gene055369 | MS.gene25670 | 0.811712 | 6.10E-51 | -1.69E-46 |
| MS.gene055741 | MS.gene25670 | 0.818382 | 2.02E-52 | -1.69E-46 |
| MS.gene055744 | MS.gene25670 | 0.82822 | 1.01E-54 | -1.69E-46 |
| MS.gene055909 | MS.gene25670 | 0.812854 | 3.44E-51 | -1.69E-46 |
| MS.gene055911 | MS.gene25670 | 0.813516 | 2.46E-51 | -1.69E-46 |
| MS.gene056330 | MS.gene25670 | -0.802596 | 5.20E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene25670 | 0.801867 | 7.35E-49 | -1.69E-46 |
| MS.gene056514 | MS.gene25670 | 0.833992 | 3.88E-56 | -1.69E-46 |
| MS.gene05666 | MS.gene25670 | 0.801388 | 9.22E-49 | -1.69E-46 |
| MS.gene057396 | MS.gene25670 | 0.819414 | 1.18E-52 | -1.69E-46 |
| MS.gene057537 | MS.gene25670 | 0.802381 | 5.77E-49 | -1.69E-46 |
| MS.gene057609 | MS.gene25670 | 0.861506 | 9.78E-64 | -1.69E-46 |
| MS.gene057610 | MS.gene25670 | 0.854107 | 1.53E-61 | -1.69E-46 |
| MS.gene058007 | MS.gene25670 | 0.800624 | 1.32E-48 | -1.69E-46 |
| MS.gene058075 | MS.gene25670 | 0.835023 | 2.14E-56 | -1.69E-46 |
| MS.gene059420 | MS.gene25670 | 0.806134 | 9.53E-50 | -1.69E-46 |
| MS.gene059674 | MS.gene25670 | 0.80993 | 1.48E-50 | -1.69E-46 |
| MS.gene059807 | MS.gene25670 | 0.841386 | 4.90E-58 | -1.69E-46 |
| MS.gene059868 | MS.gene25670 | 0.829634 | 4.61E-55 | -1.69E-46 |
| MS.gene059876 | MS.gene25670 | 0.801776 | 7.67E-49 | -1.69E-46 |
| MS.gene060372 | MS.gene25670 | 0.845056 | 5.15E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTATTTTGTATATATGT+AGG | - | 51702:7722-7741 | MS.gene25670:intron | 10.0% |
| !!! | ATTAGAAAAAAGTATATAAA+TGG | + | 51702:8222-8241 | MS.gene25670:intergenic | 10.0% |
| !!! | GGTATATTAAAAAGTATATA+TGG | - | 51702:7939-7958 | MS.gene25670:intron | 15.0% |
| !!! | TAATTTTTATTTTTGCTAGT+TGG | - | 51702:6684-6703 | MS.gene25670:CDS | 15.0% |
| !!! | TATATACTTTTTAATATACC+AGG | + | 51702:7939-7958 | MS.gene25670:intergenic | 15.0% |
| !!! | TCATTTGAGTTTTTTTTTAT+TGG | + | 51702:7083-7102 | MS.gene25670:intergenic | 15.0% |
| !! | AAACAGTTCATAGAATATTT+AGG | - | 51702:5831-5850 | MS.gene25670:intron | 20.0% |
| !! | ATATTTGCTTCTTAAAATCA+CGG | - | 51702:6938-6957 | MS.gene25670:intron | 20.0% |
| !! | TCAAAATTCAACTATGAAAA+TGG | - | 51702:6384-6403 | MS.gene25670:intron | 20.0% |
| !!! | ACATAGAATTTTGTTAATAC+CGG | + | 51702:6215-6234 | MS.gene25670:intergenic | 20.0% |
| !!! | ATATTCTATGAACTGTTTTT+TGG | + | 51702:5829-5848 | MS.gene25670:intergenic | 20.0% |
| !!! | CAACATACAATTATTTTGAT+TGG | + | 51702:8498-8517 | MS.gene25670:intergenic | 20.0% |
| !!! | TAAGTAGATAAATTGCATTT+TGG | + | 51702:7135-7154 | MS.gene25670:intergenic | 20.0% |
| !!! | TATTCTATGAACTGTTTTTT+GGG | + | 51702:5828-5847 | MS.gene25670:intergenic | 20.0% |
| !!! | TATTTTTCACTTTGCTTTTA+TGG | - | 51702:8137-8156 | MS.gene25670:intron | 20.0% |
| !!! | TTTGATAGTTGATTTAAGAT+AGG | + | 51702:6428-6447 | MS.gene25670:intergenic | 20.0% |
| !!! | TTTTTTTTATTGGTCACTTA+GGG | + | 51702:7073-7092 | MS.gene25670:intergenic | 20.0% |
| !!! | TTTTTTTTTATTGGTCACTT+AGG | + | 51702:7074-7093 | MS.gene25670:intergenic | 20.0% |
| ! | AAGATCTAATGCACTTAATT+AGG | + | 51702:6255-6274 | MS.gene25670:intergenic | 25.0% |
| ! | AATCACAAGACACTTTAATT+TGG | - | 51702:8345-8364 | MS.gene25670:CDS | 25.0% |
| ! | AATTAGGGAGAAAAAGAATA+AGG | + | 51702:6239-6258 | MS.gene25670:intergenic | 25.0% |
| ! | AGATCTAATGCACTTAATTA+GGG | + | 51702:6254-6273 | MS.gene25670:intergenic | 25.0% |
| ! | CAATCCAAACATGTTAATTT+GGG | + | 51702:7575-7594 | MS.gene25670:intergenic | 25.0% |
| ! | CTTAAGGGACTAAAATAAAA+CGG | + | 51702:6502-6521 | MS.gene25670:intergenic | 25.0% |
| ! | GTTGAATCATATATCTAAGA+TGG | - | 51702:8514-8533 | MS.gene25670:CDS | 25.0% |
| ! | TACTGTTATTAACACTAAAC+AGG | - | 51702:7465-7484 | MS.gene25670:intron | 25.0% |
| ! | TCAATCCAAACATGTTAATT+TGG | + | 51702:7576-7595 | MS.gene25670:intergenic | 25.0% |
| ! | TGAATTTGACAAAATCATCT+TGG | + | 51702:8400-8419 | MS.gene25670:intergenic | 25.0% |
| ! | TTGTTAAACTTGACTAACAT+TGG | + | 51702:7988-8007 | MS.gene25670:intergenic | 25.0% |
| !! | AAAACTGTTTTGCTTCTTTA+TGG | - | 51702:5706-5725 | MS.gene25670:CDS | 25.0% |
| !! | AAAGTATCCTTATCATGTAT+TGG | + | 51702:8177-8196 | MS.gene25670:intergenic | 25.0% |
| !! | AGAAAATAATGGAGTCAAAT+GGG | + | 51702:7812-7831 | MS.gene25670:intergenic | 25.0% |
| !! | CATAGAATTTTGTTAATACC+GGG | + | 51702:6214-6233 | MS.gene25670:intergenic | 25.0% |
| !! | CATTAGATCTTTACTAGTTT+AGG | - | 51702:6264-6283 | MS.gene25670:intron | 25.0% |
| !! | TACTAGTTTAGGCTAAATTA+TGG | - | 51702:6275-6294 | MS.gene25670:intron | 25.0% |
| !!! | AGTGTTCATTATTTTGAACA+GGG | - | 51702:8664-8683 | MS.gene25670:CDS | 25.0% |
| !!! | CTTTTTTAAATAGAGAAACC+TGG | - | 51702:7918-7937 | MS.gene25670:intron | 25.0% |
| !!! | GCTTAAGGTATCATATTTTA+TGG | - | 51702:7863-7882 | MS.gene25670:intron | 25.0% |
| !!! | GTCATTTCATTTTGGTAAAT+TGG | - | 51702:6593-6612 | MS.gene25670:intron | 25.0% |
| !!! | TAGTGTTCATTATTTTGAAC+AGG | - | 51702:8663-8682 | MS.gene25670:CDS | 25.0% |
| !!! | TTATTTTTGCTAGTTGGTTT+TGG | - | 51702:6690-6709 | MS.gene25670:CDS | 25.0% |
| !!! | TTTGATAGTTGATTTGAGAT+AGG | - | 51702:6342-6361 | MS.gene25670:intron | 25.0% |
| AACTAGGTACAAAAATGGAA+AGG | - | 51702:6082-6101 | MS.gene25670:intron | 30.0% | |
| AAGTTTCCTATAATTGACGT+GGG | - | 51702:7366-7385 | MS.gene25670:intron | 30.0% | |
| AATCAAATCTGGAGAAATAC+AGG | - | 51702:7401-7420 | MS.gene25670:intron | 30.0% | |
| ACTGTCAAGAAAATCAAATC+TGG | - | 51702:7390-7409 | MS.gene25670:intron | 30.0% | |
| ATCAACTCATAAATGGCTTA+AGG | - | 51702:7848-7867 | MS.gene25670:intron | 30.0% | |
| ATCTTAGTATGTGTTTGCTT+TGG | - | 51702:6852-6871 | MS.gene25670:intron | 30.0% | |
| ATGTATACTTAATCCTCCAA+AGG | - | 51702:7017-7036 | MS.gene25670:intron | 30.0% | |
| ATGTATTGTTATGCACATGT+AGG | - | 51702:7167-7186 | MS.gene25670:CDS | 30.0% | |
| ATTGGTATAACAGACTTAAC+AGG | + | 51702:7970-7989 | MS.gene25670:intergenic | 30.0% | |
| CATTCAACTAGGTACAAAAA+TGG | - | 51702:6077-6096 | MS.gene25670:intron | 30.0% | |
| CTAGGGATATGATGTATTAT+GGG | - | 51702:7202-7221 | MS.gene25670:CDS | 30.0% | |
| GAATAGACCAATACATGATA+AGG | - | 51702:8167-8186 | MS.gene25670:intron | 30.0% | |
| GTCAAGTTTCCATATATGTA+TGG | + | 51702:7656-7675 | MS.gene25670:intergenic | 30.0% | |
| TACCAAAATGAAATGACACT+AGG | + | 51702:6590-6609 | MS.gene25670:intergenic | 30.0% | |
| TAGCTATACTGATAGAATCA+TGG | - | 51702:8310-8329 | MS.gene25670:CDS | 30.0% | |
| TAGGGATATGATGTATTATG+GGG | - | 51702:7203-7222 | MS.gene25670:CDS | 30.0% | |
| TCAAGAGATCAACTCATAAA+TGG | - | 51702:7841-7860 | MS.gene25670:intron | 30.0% | |
| TCTAGGGATATGATGTATTA+TGG | - | 51702:7201-7220 | MS.gene25670:CDS | 30.0% | |
| TGAATTGAAAGTGATGTAAG+TGG | + | 51702:8116-8135 | MS.gene25670:intergenic | 30.0% | |
| TTTGCCCAAATTAACATGTT+TGG | - | 51702:7568-7587 | MS.gene25670:intron | 30.0% | |
| ! | CAGAAAATAATGGAGTCAAA+TGG | + | 51702:7813-7832 | MS.gene25670:intergenic | 30.0% |
| ! | GTAGGTTCATTTTCTTTCTA+GGG | - | 51702:7185-7204 | MS.gene25670:CDS | 30.0% |
| ! | TATGGAGATTGCTTTAGATT+TGG | - | 51702:6151-6170 | MS.gene25670:intron | 30.0% |
| ! | TGTAGGTTCATTTTCTTTCT+AGG | - | 51702:7184-7203 | MS.gene25670:CDS | 30.0% |
| !! | ATGTTGATGATGATGAGAAA+TGG | - | 51702:5916-5935 | MS.gene25670:intron | 30.0% |
| !! | ATTTGCAAGTTGAATTTTGG+AGG | + | 51702:7048-7067 | MS.gene25670:intergenic | 30.0% |
| !! | ATTTTGGTCGTAAGTTACAA+AGG | + | 51702:7119-7138 | MS.gene25670:intergenic | 30.0% |
| !! | CATTTTAAGCATGTGTTGTT+TGG | + | 51702:7000-7019 | MS.gene25670:intergenic | 30.0% |
| !! | GTGATTTGCAAGTTGAATTT+TGG | + | 51702:7051-7070 | MS.gene25670:intergenic | 30.0% |
| !! | TATGGAGTACTACTTCTTTT+TGG | - | 51702:7881-7900 | MS.gene25670:intron | 30.0% |
| !! | TTTGCAAGTTGAATTTTGGA+GGG | + | 51702:7047-7066 | MS.gene25670:intergenic | 30.0% |
| !!! | CGTTTTATTTTAGTCCCTTA+AGG | - | 51702:6500-6519 | MS.gene25670:intron | 30.0% |
| !!! | TCAGTTATTTTGAGACAGAA+CGG | - | 51702:8269-8288 | MS.gene25670:CDS | 30.0% |
| !!! | TTCCTAGTGTCATTTCATTT+TGG | - | 51702:6585-6604 | MS.gene25670:intron | 30.0% |
| AAAGCTGAGAATAAGAGTTC+TGG | - | 51702:5945-5964 | MS.gene25670:intron | 35.0% | |
| AATCTGCATGTTGCAAATCA+CGG | + | 51702:6302-6321 | MS.gene25670:intergenic | 35.0% | |
| AGCAAATGATATTGCTATGC+TGG | - | 51702:8819-8838 | MS.gene25670:CDS | 35.0% | |
| AGGGATATGATGTATTATGG+GGG | - | 51702:7204-7223 | MS.gene25670:CDS | 35.0% | |
| ATGACACTGCATTCAATCAA+GGG | + | 51702:8625-8644 | MS.gene25670:intergenic | 35.0% | |
| CAACAGCTCTGTTGTATATA+GGG | + | 51702:5884-5903 | MS.gene25670:intergenic | 35.0% | |
| CAAGTTTCCTATAATTGACG+TGG | - | 51702:7365-7384 | MS.gene25670:intron | 35.0% | |
| GAAACCAGTGCAGAAAATAA+TGG | + | 51702:7823-7842 | MS.gene25670:intergenic | 35.0% | |
| GCACTTGTGAATACATTAAG+AGG | - | 51702:7617-7636 | MS.gene25670:intron | 35.0% | |
| GTAAAAACAGTTCCAAAGTG+CGG | - | 51702:6960-6979 | MS.gene25670:intron | 35.0% | |
| GTTACAAAGGATAGACATGT+TGG | + | 51702:7106-7125 | MS.gene25670:intergenic | 35.0% | |
| TAAAGACATAGATTGACGAG+TGG | - | 51702:7695-7714 | MS.gene25670:intron | 35.0% | |
| TACTTCATCTTCATGGTGAA+CGG | + | 51702:7342-7361 | MS.gene25670:intergenic | 35.0% | |
| TATGGAGATCTGAGCAAATA+TGG | - | 51702:7294-7313 | MS.gene25670:intron | 35.0% | |
| TCAACAGCTCTGTTGTATAT+AGG | + | 51702:5885-5904 | MS.gene25670:intergenic | 35.0% | |
| TCCAAGAGAGATCAGTATTT+AGG | + | 51702:7496-7515 | MS.gene25670:intergenic | 35.0% | |
| TCTCTTTCGAGAATGATGAA+AGG | + | 51702:5687-5706 | MS.gene25670:intergenic | 35.0% | |
| TTCAATCATTGTTAGAAGCC+CGG | - | 51702:6193-6212 | MS.gene25670:intron | 35.0% | |
| TTCACCATGAAGATGAAGTA+TGG | - | 51702:7342-7361 | MS.gene25670:intron | 35.0% | |
| TTCGAGAATGATGAAAGGTA+TGG | + | 51702:5682-5701 | MS.gene25670:intergenic | 35.0% | |
| ! | AAACATCTGACTTGACAAGA+AGG | - | 51702:6621-6640 | MS.gene25670:CDS | 35.0% |
| ! | AATAATGGAGTCAAATGGGT+AGG | + | 51702:7808-7827 | MS.gene25670:intergenic | 35.0% |
| ! | GCTTTAGATTTGGCTAACTT+TGG | - | 51702:6161-6180 | MS.gene25670:intron | 35.0% |
| ! | TGATGATGATGAGAAATGGA+GGG | - | 51702:5920-5939 | MS.gene25670:intron | 35.0% |
| !! | AATTTTGGAGGGAAAACCTT+TGG | + | 51702:7036-7055 | MS.gene25670:intergenic | 35.0% |
| !! | TCACCTATTTTGAGAGAGAA+CGG | + | 51702:8042-8061 | MS.gene25670:intergenic | 35.0% |
| !! | TTGATGATGATGAGAAATGG+AGG | - | 51702:5919-5938 | MS.gene25670:intron | 35.0% |
| !!! | GTTCATTATTTTGAACAGGG+TGG | - | 51702:8667-8686 | MS.gene25670:CDS | 35.0% |
| !!! | TGTTTTTTGGGTACATAGTG+AGG | + | 51702:5816-5835 | MS.gene25670:intergenic | 35.0% |
| !!! | TTGGTTTTGGAAGGTTTTAG+AGG | - | 51702:6703-6722 | MS.gene25670:CDS | 35.0% |
| !!! | TTTTGCTAGTTGGTTTTGGA+AGG | - | 51702:6694-6713 | MS.gene25670:CDS | 35.0% |
| AAGCACATGACATGCATAGA+TGG | - | 51702:7518-7537 | MS.gene25670:intron | 40.0% | |
| AAGGGTTGGAGAGTTTCAAA+GGG | - | 51702:6045-6064 | MS.gene25670:intron | 40.0% | |
| ACAGTTCCCACGTCAATTAT+AGG | + | 51702:7375-7394 | MS.gene25670:intergenic | 40.0% | |
| ACATAGTGAGGATAAGAAGG+TGG | + | 51702:5804-5823 | MS.gene25670:intergenic | 40.0% | |
| ACTTCATCTTCATGGTGAAC+GGG | + | 51702:7341-7360 | MS.gene25670:intergenic | 40.0% | |
| AGATTCTTGGTTGTTGCTAG+TGG | - | 51702:5990-6009 | MS.gene25670:intron | 40.0% | |
| ATAGCAAGCAGGATTGTGTA+TGG | - | 51702:7276-7295 | MS.gene25670:intron | 40.0% | |
| ATGAAGATGAACACGATCGT+AGG | + | 51702:5742-5761 | MS.gene25670:intergenic | 40.0% | |
| CATGACACTGCATTCAATCA+AGG | + | 51702:8626-8645 | MS.gene25670:intergenic | 40.0% | |
| CATTAAGAGGTTGAGTGATG+CGG | - | 51702:7630-7649 | MS.gene25670:intron | 40.0% | |
| CTTCCGTTCTCTCTCAAAAT+AGG | - | 51702:8036-8055 | MS.gene25670:intron | 40.0% | |
| CTTGCCATACTTCATCTTCA+TGG | + | 51702:7349-7368 | MS.gene25670:intergenic | 40.0% | |
| GCCTAAATACTGATCTCTCT+TGG | - | 51702:7492-7511 | MS.gene25670:intron | 40.0% | |
| GGAAAGTGATGCATTCAACT+AGG | - | 51702:6066-6085 | MS.gene25670:intron | 40.0% | |
| GGGCTTCTAACAATGATTGA+AGG | + | 51702:6194-6213 | MS.gene25670:intergenic | 40.0% | |
| GGTACATAGTGAGGATAAGA+AGG | + | 51702:5807-5826 | MS.gene25670:intergenic | 40.0% | |
| GGTTTACCATACCATTGGAA+GGG | - | 51702:8724-8743 | MS.gene25670:CDS | 40.0% | |
| GTGTGACGATTGTACCTTAA+GGG | + | 51702:6517-6536 | MS.gene25670:intergenic | 40.0% | |
| TAACTATCTGTCACCAAGCA+CGG | - | 51702:7236-7255 | MS.gene25670:CDS | 40.0% | |
| TACCATTGGAAGGGTAAGAA+CGG | - | 51702:8733-8752 | MS.gene25670:CDS | 40.0% | |
| TATGTGTTTGCTTTGGCAGT+GGG | - | 51702:6859-6878 | MS.gene25670:intron | 40.0% | |
| TGAGGATAAGAAGGTGGAAA+AGG | + | 51702:5798-5817 | MS.gene25670:intergenic | 40.0% | |
| TGGTTTACCATACCATTGGA+AGG | - | 51702:8723-8742 | MS.gene25670:CDS | 40.0% | |
| TGTGTGACGATTGTACCTTA+AGG | + | 51702:6518-6537 | MS.gene25670:intergenic | 40.0% | |
| TTCCAATGGTATGGTAAACC+AGG | + | 51702:8724-8743 | MS.gene25670:intergenic | 40.0% | |
| TTCTTACCCTTCCAATGGTA+TGG | + | 51702:8733-8752 | MS.gene25670:intergenic | 40.0% | |
| ! | AAGAACGGTTTTTACTGCGT+TGG | - | 51702:8748-8767 | MS.gene25670:CDS | 40.0% |
| ! | AGAACGGTTTTTACTGCGTT+GGG | - | 51702:8749-8768 | MS.gene25670:CDS | 40.0% |
| ! | ATGGGTAGGATTTTCCATCA+CGG | + | 51702:7794-7813 | MS.gene25670:intergenic | 40.0% |
| ! | CAGCTTTAATATCCGCACTT+TGG | + | 51702:6975-6994 | MS.gene25670:intergenic | 40.0% |
| ! | GACTCCATTATTTTCTGCAC+TGG | - | 51702:7816-7835 | MS.gene25670:intron | 40.0% |
| ! | GATGAGCATGTTCTTGTTGT+TGG | - | 51702:6113-6132 | MS.gene25670:intron | 40.0% |
| ! | GCAGAAATAGAGAGCATAAG+TGG | - | 51702:7753-7772 | MS.gene25670:intron | 40.0% |
| ! | GGAGTATTCTGGAAGATTCT+TGG | - | 51702:5977-5996 | MS.gene25670:intron | 40.0% |
| ! | GGTATACCTTTTCCTAGTGA+AGG | - | 51702:7315-7334 | MS.gene25670:intron | 40.0% |
| ! | GGTGATCTTTTGAATGAGGA+TGG | - | 51702:8688-8707 | MS.gene25670:CDS | 40.0% |
| ! | TAAGAGTTCTGGTGAAGTTG+AGG | - | 51702:5956-5975 | MS.gene25670:intron | 40.0% |
| ! | TTGTCAAGGAGGGGATTTTA+TGG | - | 51702:8772-8791 | MS.gene25670:CDS | 40.0% |
| !! | ACAGCACTTTAGCTCTTTGT+CGG | + | 51702:6660-6679 | MS.gene25670:intergenic | 40.0% |
| !! | CATGTTCTTGTTGTTGGTTC+TGG | - | 51702:6119-6138 | MS.gene25670:intron | 40.0% |
| !! | CTATTTTGAGAGAGAACGGA+AGG | + | 51702:8038-8057 | MS.gene25670:intergenic | 40.0% |
| !! | CTTATGCTCTCTATTTCTGC+TGG | + | 51702:7753-7772 | MS.gene25670:intergenic | 40.0% |
| !! | GAAGCACCGGTGATAATAAT+CGG | - | 51702:5609-5628 | MS.gene25670:CDS | 40.0% |
| !! | GTTGTTGGTTCTGGTAATTC+TGG | - | 51702:6128-6147 | MS.gene25670:intron | 40.0% |
| !! | TGGTTCTGGTAATTCTGGTA+TGG | - | 51702:6133-6152 | MS.gene25670:intron | 40.0% |
| AACCGTTCTTACCCTTCCAA+TGG | + | 51702:8738-8757 | MS.gene25670:intergenic | 45.0% | |
| AACTAGTGGTGATAGCAAGC+AGG | - | 51702:7265-7284 | MS.gene25670:intron | 45.0% | |
| AGCCTGGTTTACCATACCAT+TGG | - | 51702:8719-8738 | MS.gene25670:CDS | 45.0% | |
| ATAATCGGAGCTGGAACATC+CGG | - | 51702:5624-5643 | MS.gene25670:CDS | 45.0% | |
| CCAGCTCCGATTATTATCAC+CGG | + | 51702:5618-5637 | MS.gene25670:intergenic | 45.0% | |
| GAAGGGTTGGAGAGTTTCAA+AGG | - | 51702:6044-6063 | MS.gene25670:intron | 45.0% | |
| GAAGGTGGAAAAGGAAAGTG+TGG | + | 51702:5789-5808 | MS.gene25670:intergenic | 45.0% | |
| GTATGTGTTTGCTTTGGCAG+TGG | - | 51702:6858-6877 | MS.gene25670:intron | 45.0% | |
| GTGATGCGGCCATACATATA+TGG | - | 51702:7644-7663 | MS.gene25670:intron | 45.0% | |
| TGGTATGGTAAACCAGGCTT+TGG | + | 51702:8718-8737 | MS.gene25670:intergenic | 45.0% | |
| TTCCATCACGGAACAACACT+TGG | + | 51702:7782-7801 | MS.gene25670:intergenic | 45.0% | |
| TTTGGAGGGAAAACCTTTGG+AGG | + | 51702:7033-7052 | MS.gene25670:intergenic | 45.0% | |
| ! | AACCAAGTGTTGTTCCGTGA+TGG | - | 51702:7777-7796 | MS.gene25670:intron | 45.0% |
| ! | CATCTGACTTGACAAGAAGG+AGG | - | 51702:6624-6643 | MS.gene25670:CDS | 45.0% |
| ! | GGGTGGTGATCTTTTGAATG+AGG | - | 51702:8684-8703 | MS.gene25670:CDS | 45.0% |
| ! | TTTACTGCGTTGGGTTGTCA+AGG | - | 51702:8758-8777 | MS.gene25670:CDS | 45.0% |
| ! | TTTTGTTAAGCAAGCTGCCG+TGG | + | 51702:5655-5674 | MS.gene25670:intergenic | 45.0% |
| !! | GCGGATTGTTACTGCGATTT+TGG | + | 51702:6899-6918 | MS.gene25670:intergenic | 45.0% |
| !! | GGTGAAGTTGAGGAGTATTC+TGG | - | 51702:5966-5985 | MS.gene25670:intron | 45.0% |
| !! | TCTTAGCTTTGCTGCAAACG+CGG | + | 51702:6918-6937 | MS.gene25670:intergenic | 45.0% |
| !! | TTGCTACATTTTGAGCGTCG+AGG | + | 51702:8804-8823 | MS.gene25670:intergenic | 45.0% |
| !!! | AACGGAAGGAGTGTTTTGCA+AGG | + | 51702:8024-8043 | MS.gene25670:intergenic | 45.0% |
| AACGGGCCTTCACTAGGAAA+AGG | + | 51702:7324-7343 | MS.gene25670:intergenic | 50.0% | |
| AAGCACGGTGGAGAAACTAG+TGG | - | 51702:7251-7270 | MS.gene25670:CDS | 50.0% | |
| CCGGTGATAATAATCGGAGC+TGG | - | 51702:5615-5634 | MS.gene25670:CDS | 50.0% | |
| CTCGTGTACCTGAGGTTGAA+GGG | - | 51702:6027-6046 | MS.gene25670:intron | 50.0% | |
| TGTACCTGAGGTTGAAGGGT+TGG | - | 51702:6031-6050 | MS.gene25670:intron | 50.0% | |
| ! | ACTAGTTTCTCCACCGTGCT+TGG | + | 51702:7252-7271 | MS.gene25670:intergenic | 50.0% |
| ! | GAGGATGGTTTTCCAAAGCC+TGG | - | 51702:8703-8722 | MS.gene25670:CDS | 50.0% |
| !!! | ACTGCGATTTTGGCTGAACG+TGG | + | 51702:6889-6908 | MS.gene25670:intergenic | 50.0% |
| AGCTGAACCTCGTGTACCTG+AGG | - | 51702:6019-6038 | MS.gene25670:intron | 55.0% | |
| ATGGTGAACGGGCCTTCACT+AGG | + | 51702:7330-7349 | MS.gene25670:intergenic | 55.0% | |
| CACGCAGATTCACGCTGCTA+CGG | + | 51702:6456-6475 | MS.gene25670:intergenic | 55.0% | |
| CCTCGTGTACCTGAGGTTGA+AGG | - | 51702:6026-6045 | MS.gene25670:intron | 55.0% | |
| CCTTCAACCTCAGGTACACG+AGG | + | 51702:6029-6048 | MS.gene25670:intergenic | 55.0% | |
| CTATCTGTCACCAAGCACGG+TGG | - | 51702:7239-7258 | MS.gene25670:CDS | 55.0% | |
| CTCTCCAACCCTTCAACCTC+AGG | + | 51702:6038-6057 | MS.gene25670:intergenic | 55.0% | |
| TTAAGCAAGCTGCCGTGGCT+AGG | + | 51702:5650-5669 | MS.gene25670:intergenic | 55.0% | |
| ! | ACTGCGTTGGGTTGTCAAGG+AGG | - | 51702:8761-8780 | MS.gene25670:CDS | 55.0% |
| ! | CTGCGTTGGGTTGTCAAGGA+GGG | - | 51702:8762-8781 | MS.gene25670:CDS | 55.0% |
| ! | TGCGTTGGGTTGTCAAGGAG+GGG | - | 51702:8763-8782 | MS.gene25670:CDS | 55.0% |
| TGGAACATCCGGCCTAGCCA+CGG | - | 51702:5635-5654 | MS.gene25670:CDS | 60.0% | |
| GCAAGCTGCCGTGGCTAGGC+CGG | + | 51702:5646-5665 | MS.gene25670:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51702 | gene | 5602 | 8864 | 5602 | ID=MS.gene25670 |
| 51702 | mRNA | 5602 | 8864 | 5602 | ID=MS.gene25670.t1;Parent=MS.gene25670 |
| 51702 | exon | 8252 | 8864 | 8252 | ID=MS.gene25670.t1.exon1;Parent=MS.gene25670.t1 |
| 51702 | CDS | 8252 | 8864 | 8252 | ID=cds.MS.gene25670.t1;Parent=MS.gene25670.t1 |
| 51702 | exon | 7044 | 7277 | 7044 | ID=MS.gene25670.t1.exon2;Parent=MS.gene25670.t1 |
| 51702 | CDS | 7044 | 7277 | 7044 | ID=cds.MS.gene25670.t1;Parent=MS.gene25670.t1 |
| 51702 | exon | 6597 | 6722 | 6597 | ID=MS.gene25670.t1.exon3;Parent=MS.gene25670.t1 |
| 51702 | CDS | 6597 | 6722 | 6597 | ID=cds.MS.gene25670.t1;Parent=MS.gene25670.t1 |
| 51702 | exon | 5602 | 5781 | 5602 | ID=MS.gene25670.t1.exon4;Parent=MS.gene25670.t1 |
| 51702 | CDS | 5602 | 5781 | 5602 | ID=cds.MS.gene25670.t1;Parent=MS.gene25670.t1 |
| Gene Sequence |
| Protein sequence |
