Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26707.t1 | XP_003609944.1 | 92.1 | 241 | 13 | 1 | 1 | 241 | 1 | 235 | 4.70E-117 | 430.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26707.t1 | Q94HF1 | 79.5 | 219 | 44 | 1 | 23 | 241 | 9 | 226 | 2.1e-97 | 356.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26707.t1 | G7JS43 | 92.1 | 241 | 13 | 1 | 1 | 241 | 1 | 235 | 3.4e-117 | 430.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene26707 | 0.832885 | 7.32E-56 | -1.69E-46 |
| MS.gene050134 | MS.gene26707 | 0.859322 | 4.48E-63 | -1.69E-46 |
| MS.gene050638 | MS.gene26707 | -0.807089 | 5.99E-50 | -1.69E-46 |
| MS.gene050791 | MS.gene26707 | 0.844498 | 7.28E-59 | -1.69E-46 |
| MS.gene050912 | MS.gene26707 | 0.827292 | 1.70E-54 | -1.69E-46 |
| MS.gene051984 | MS.gene26707 | 0.842962 | 1.88E-58 | -1.69E-46 |
| MS.gene052664 | MS.gene26707 | 0.830487 | 2.86E-55 | -1.69E-46 |
| MS.gene053224 | MS.gene26707 | 0.885373 | 8.60E-72 | -1.69E-46 |
| MS.gene057272 | MS.gene26707 | 0.848269 | 6.82E-60 | -1.69E-46 |
| MS.gene057641 | MS.gene26707 | 0.814143 | 1.79E-51 | -1.69E-46 |
| MS.gene057643 | MS.gene26707 | 0.85616 | 3.88E-62 | -1.69E-46 |
| MS.gene060483 | MS.gene26707 | 0.830211 | 3.34E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene93599 | MS.gene26707 | PPI |
| MS.gene93613 | MS.gene26707 | PPI |
| MS.gene26707 | MS.gene56143 | PPI |
| MS.gene26707 | MS.gene061898 | PPI |
| MS.gene26707 | MS.gene64519 | PPI |
| MS.gene018560 | MS.gene26707 | PPI |
| MS.gene09852 | MS.gene26707 | PPI |
| MS.gene26707 | MS.gene43132 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26707.t1 | MTR_4g124640 | 95.021 | 241 | 6 | 1 | 1 | 241 | 1 | 235 | 3.93e-170 | 468 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26707.t1 | AT4G33250 | 77.477 | 222 | 45 | 2 | 19 | 240 | 9 | 225 | 7.93e-128 | 361 |
Find 54 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATCATTAAATTCATTTC+TGG | 0.142858 | 8.4:-10572834 | None:intergenic |
| CTGGAAGGTTTCGTCAGTTC+TGG | 0.234923 | 8.4:+10571638 | MS.gene26707:CDS |
| TCGAGATCTGGAAGAATATC+TGG | 0.270145 | 8.4:-10570096 | None:intergenic |
| TGTTCTGTCTCACTATTTAG+AGG | 0.302059 | 8.4:+10571543 | MS.gene26707:CDS |
| ACCTCAGCAAGCACAGTTCT+AGG | 0.306787 | 8.4:-10572282 | None:intergenic |
| GCACAGTTCTAGGAATCTTT+TGG | 0.326432 | 8.4:-10572272 | None:intergenic |
| GGATCATTAAATTCATTTCT+GGG | 0.389991 | 8.4:-10572833 | None:intergenic |
| CGTTGCTCGCATATTGGTTA+AGG | 0.392388 | 8.4:+10570418 | MS.gene26707:CDS |
| GAATAGGCTATCAATGTAGA+AGG | 0.397813 | 8.4:+10572719 | MS.gene26707:intron |
| AGTTGGCTACTTGGTGTTCA+AGG | 0.416300 | 8.4:-10572760 | None:intergenic |
| CCCAACCAGAGTTGGCTACT+TGG | 0.435040 | 8.4:-10572769 | None:intergenic |
| CGATGAGTTGACCCTTCCCC+TGG | 0.436267 | 8.4:-10572805 | None:intergenic |
| TGGAAGGTTTCGTCAGTTCT+GGG | 0.441956 | 8.4:+10571639 | MS.gene26707:CDS |
| AAGAATCATACCACACGTTC+CGG | 0.441975 | 8.4:-10571164 | None:intergenic |
| ATAGAAAATCAGCTAAGAAT+AGG | 0.455595 | 8.4:-10572914 | None:intergenic |
| CGAAAATTATGTCAATGATC+AGG | 0.458244 | 8.4:+10570116 | MS.gene26707:CDS |
| AAGAGACATAGGCTGAAGTC+TGG | 0.460902 | 8.4:-10571134 | None:intergenic |
| TCCTTGCTGTTGTACTTGTA+CGG | 0.463786 | 8.4:-10570013 | None:intergenic |
| ACAACAGCAAGGACAAGGAC+AGG | 0.464338 | 8.4:+10570023 | MS.gene26707:CDS |
| CTCAATAACCCAACCAGAGT+TGG | 0.468021 | 8.4:-10572777 | None:intergenic |
| AATTATTGCAGGATTTGAGC+AGG | 0.473491 | 8.4:+10572209 | MS.gene26707:intron |
| CTTCTCTTCTTCAGACTGGA+AGG | 0.475180 | 8.4:+10571623 | MS.gene26707:intron |
| CATATAGTTGAAGCTGTGCC+AGG | 0.477852 | 8.4:+10571682 | MS.gene26707:CDS |
| CTGCCTTCTTCGCCTCTACC+AGG | 0.481697 | 8.4:+10570260 | MS.gene26707:CDS |
| TCAGATCGTTGCTCGCATAT+TGG | 0.484728 | 8.4:+10570412 | MS.gene26707:CDS |
| CAATGTAGAAGGTTTATCCT+TGG | 0.488911 | 8.4:+10572730 | MS.gene26707:CDS |
| CACTGCAGATAGTGTACCAT+TGG | 0.497181 | 8.4:+10572871 | MS.gene26707:CDS |
| CATTAAATTCATTTCTGGGA+AGG | 0.506668 | 8.4:-10572829 | None:intergenic |
| TATTGAGAAAAGCCAGGGGA+AGG | 0.508280 | 8.4:+10572793 | MS.gene26707:CDS |
| GAACATGAATCGCATAGCCT+TGG | 0.508528 | 8.4:-10572236 | None:intergenic |
| CCAAGTAGCCAACTCTGGTT+GGG | 0.517284 | 8.4:+10572769 | MS.gene26707:CDS |
| TTGGGTTATTGAGAAAAGCC+AGG | 0.525809 | 8.4:+10572787 | MS.gene26707:CDS |
| GAAGGCAGAGATTTGATTCG+AGG | 0.526051 | 8.4:-10570245 | None:intergenic |
| ACCAAGTAGCCAACTCTGGT+TGG | 0.542756 | 8.4:+10572768 | MS.gene26707:CDS |
| GGATTTGAGCAGGCAATCCA+AGG | 0.567214 | 8.4:+10572219 | MS.gene26707:intron |
| TACCATTGGAGCACATTAGA+CGG | 0.570341 | 8.4:+10572885 | MS.gene26707:CDS |
| TGGAGCTGGCATAGCCATGA+GGG | 0.570416 | 8.4:-10571114 | None:intergenic |
| ATACCTGGTAGAGGCGAAGA+AGG | 0.571105 | 8.4:-10570263 | None:intergenic |
| GTGTTCAAGGAATTTGTCCA+AGG | 0.573518 | 8.4:-10572747 | None:intergenic |
| CATAGGCTGAAGTCTGGAGC+TGG | 0.575628 | 8.4:-10571128 | None:intergenic |
| GAACACCAAGTAGCCAACTC+TGG | 0.578457 | 8.4:+10572764 | MS.gene26707:CDS |
| AGAAAATGGATACCTGGTAG+AGG | 0.583966 | 8.4:-10570272 | None:intergenic |
| TGGGTTATTGAGAAAAGCCA+GGG | 0.586311 | 8.4:+10572788 | MS.gene26707:CDS |
| ATCCGTCTAATGTGCTCCAA+TGG | 0.587256 | 8.4:-10572887 | None:intergenic |
| GAGCTGTTCGACAGTGTAAG+CGG | 0.592715 | 8.4:-10570052 | None:intergenic |
| TCCTAGAACTGTGCTTGCTG+AGG | 0.608721 | 8.4:+10572281 | MS.gene26707:CDS |
| CAACAGCAAGGACAAGGACA+GGG | 0.614854 | 8.4:+10570024 | MS.gene26707:CDS |
| ATTGAGAAAAGCCAGGGGAA+GGG | 0.616926 | 8.4:+10572794 | MS.gene26707:CDS |
| CAAGTACAACAGCAAGGACA+AGG | 0.618746 | 8.4:+10570018 | MS.gene26707:CDS |
| CTGTGAATATTAGCAAATGG+AGG | 0.623742 | 8.4:+10571501 | MS.gene26707:intron |
| CTGGAGCTGGCATAGCCATG+AGG | 0.661849 | 8.4:-10571115 | None:intergenic |
| CAGCAAGGACAAGGACAGGG+AGG | 0.673719 | 8.4:+10570027 | MS.gene26707:CDS |
| GCCGTACAAGTACAACAGCA+AGG | 0.674180 | 8.4:+10570012 | MS.gene26707:CDS |
| GGGTTATTGAGAAAAGCCAG+GGG | 0.752929 | 8.4:+10572789 | MS.gene26707:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATTTTAAAATGATTAAT+AGG | + | chr8.4:10570328-10570347 | MS.gene26707:intron | 10.0% |
| !! | AACAAAAATTAATGAACAAA+AGG | - | chr8.4:10571479-10571498 | None:intergenic | 15.0% |
| !! | ACAAAAATTAATGAACAAAA+GGG | - | chr8.4:10571478-10571497 | None:intergenic | 15.0% |
| !! | CAAGTTTAACAAAAAATAAA+TGG | - | chr8.4:10572700-10572719 | None:intergenic | 15.0% |
| !!! | ATTATTTTATCTACTAATAG+TGG | - | chr8.4:10570797-10570816 | None:intergenic | 15.0% |
| !!! | ATTTGGTTTTGTTTTTTAAT+AGG | + | chr8.4:10571091-10571110 | MS.gene26707:intron | 15.0% |
| !!! | ATTTTTTGTTAAACTTGAAT+AGG | + | chr8.4:10572703-10572722 | MS.gene26707:intron | 15.0% |
| !!! | TAAATGATTCTTGAAAATTT+TGG | + | chr8.4:10572492-10572511 | MS.gene26707:intron | 15.0% |
| !!! | TTTTTTTGAACAAGAAATTT+TGG | + | chr8.4:10572532-10572551 | MS.gene26707:intron | 15.0% |
| !! | AATGACGATTAATAAGAAAA+TGG | - | chr8.4:10570289-10570308 | None:intergenic | 20.0% |
| !! | ATTTAAATGGACAAAACAAA+AGG | - | chr8.4:10572311-10572330 | None:intergenic | 20.0% |
| !! | TACTATTACAATTGACTATT+AGG | - | chr8.4:10571296-10571315 | None:intergenic | 20.0% |
| !! | TTATGAAAATAAGCTGAAAA+CGG | - | chr8.4:10570884-10570903 | None:intergenic | 20.0% |
| !!! | GTAATAGTATGAATTTTACT+TGG | + | chr8.4:10571307-10571326 | MS.gene26707:intron | 20.0% |
| !!! | TTACTTTAGAAAATTATTGC+AGG | + | chr8.4:10572198-10572217 | MS.gene26707:intron | 20.0% |
| ! | AGACTTAGAAAAACTATTAG+AGG | + | chr8.4:10571795-10571814 | MS.gene26707:intron | 25.0% |
| ! | ATATGGATGATAAAGAAGAA+AGG | - | chr8.4:10570145-10570164 | None:intergenic | 25.0% |
| ! | ATCATCCATATCACTTAATT+AGG | + | chr8.4:10570154-10570173 | MS.gene26707:intron | 25.0% |
| ! | ATGAAACCTGAAGAAATAAT+TGG | - | chr8.4:10570212-10570231 | None:intergenic | 25.0% |
| ! | ATTAAATCAGTATAATCACC+TGG | - | chr8.4:10571703-10571722 | None:intergenic | 25.0% |
| ! | ATTGTTTCGTTTATTCCTTT+GGG | + | chr8.4:10572467-10572486 | MS.gene26707:intron | 25.0% |
| ! | CTTGTCATTGATATGTTATT+GGG | + | chr8.4:10572025-10572044 | MS.gene26707:intron | 25.0% |
| ! | GAAATCAACTGATATCATAT+AGG | - | chr8.4:10572649-10572668 | None:intergenic | 25.0% |
| ! | GGATCATTAAATTCATTTCT+GGG | - | chr8.4:10572836-10572855 | None:intergenic | 25.0% |
| ! | TAAACCCTAATTAAGTGATA+TGG | - | chr8.4:10570162-10570181 | None:intergenic | 25.0% |
| ! | TAAACGAACCAACATTTAAA+TGG | - | chr8.4:10572324-10572343 | None:intergenic | 25.0% |
| ! | TATATCGAGTAATGCTAAAT+AGG | - | chr8.4:10571444-10571463 | None:intergenic | 25.0% |
| ! | TATTGTTTCGTTTATTCCTT+TGG | + | chr8.4:10572466-10572485 | MS.gene26707:intron | 25.0% |
| ! | TCATCCATATCACTTAATTA+GGG | + | chr8.4:10570155-10570174 | MS.gene26707:intron | 25.0% |
| ! | TGGATCATTAAATTCATTTC+TGG | - | chr8.4:10572837-10572856 | None:intergenic | 25.0% |
| ! | TTAATAAGAAAATGGATACC+TGG | - | chr8.4:10570281-10570300 | None:intergenic | 25.0% |
| ! | TTACTGTGAATATTAGCAAA+TGG | + | chr8.4:10571498-10571517 | MS.gene26707:intron | 25.0% |
| ! | TTATCACTTGCTCAAATATT+TGG | + | chr8.4:10571074-10571093 | MS.gene26707:intron | 25.0% |
| !! | ATGATTCTTGAAAATTTTGG+CGG | + | chr8.4:10572495-10572514 | MS.gene26707:intron | 25.0% |
| !! | TCAATTCCAATTATTTCTTC+AGG | + | chr8.4:10570203-10570222 | MS.gene26707:intron | 25.0% |
| !! | TGTTTTGTCCATTTAAATGT+TGG | + | chr8.4:10572313-10572332 | MS.gene26707:intron | 25.0% |
| !! | TTTTGAACAAGAAATTTTGG+CGG | + | chr8.4:10572535-10572554 | MS.gene26707:intron | 25.0% |
| !!! | ATTGATTTTTTGAAAACCTG+TGG | + | chr8.4:10572092-10572111 | MS.gene26707:intron | 25.0% |
| !!! | CACTATTTTAGTAAATGATG+CGG | - | chr8.4:10570636-10570655 | None:intergenic | 25.0% |
| !!! | TTGATTTTTTGAAAACCTGT+GGG | + | chr8.4:10572093-10572112 | MS.gene26707:intron | 25.0% |
| AACCAAAAATCATATGCCTA+AGG | + | chr8.4:10570479-10570498 | MS.gene26707:intron | 30.0% | |
| ACCAAAAATCATATGCCTAA+GGG | + | chr8.4:10570480-10570499 | MS.gene26707:intron | 30.0% | |
| AGTGATAATATCAGCTATCT+TGG | - | chr8.4:10571062-10571081 | None:intergenic | 30.0% | |
| ATATGACAAGCATTTCAAGA+TGG | + | chr8.4:10571988-10572007 | MS.gene26707:intron | 30.0% | |
| CGAAAATTATGTCAATGATC+AGG | + | chr8.4:10570116-10570135 | MS.gene26707:CDS | 30.0% | |
| GCTTGTCATTGATATGTTAT+TGG | + | chr8.4:10572024-10572043 | MS.gene26707:intron | 30.0% | |
| GTAGATGTCTATAATTGAGA+AGG | + | chr8.4:10571269-10571288 | MS.gene26707:intron | 30.0% | |
| TCCAAAACTTAGTTTAACTC+CGG | + | chr8.4:10572406-10572425 | MS.gene26707:intron | 30.0% | |
| TGTTCTCATGCATAATTGAT+TGG | + | chr8.4:10571220-10571239 | MS.gene26707:intron | 30.0% | |
| TTGTTTCGTTTATTCCTTTG+GGG | + | chr8.4:10572468-10572487 | MS.gene26707:intron | 30.0% | |
| ! | AATACCTATATCTAAAGCTG+TGG | + | chr8.4:10570736-10570755 | MS.gene26707:intron | 30.0% |
| ! | CATTAAATTCATTTCTGGGA+AGG | - | chr8.4:10572832-10572851 | None:intergenic | 30.0% |
| ! | GCAGTGTTTTTCTTCAAAAT+TGG | - | chr8.4:10572857-10572876 | None:intergenic | 30.0% |
| ! | TGGTTTTTGATAAATCACTG+TGG | + | chr8.4:10571848-10571867 | MS.gene26707:intron | 30.0% |
| ! | TTTCTCAAATACAAGAGTGT+TGG | + | chr8.4:10572583-10572602 | MS.gene26707:intron | 30.0% |
| !! | CTACTAATAGTGGACAAATT+GGG | - | chr8.4:10570787-10570806 | None:intergenic | 30.0% |
| !! | GTTTAGTATTGACTCTGATT+TGG | + | chr8.4:10572134-10572153 | MS.gene26707:intron | 30.0% |
| !! | TACTAATAGTGGACAAATTG+GGG | - | chr8.4:10570786-10570805 | None:intergenic | 30.0% |
| !! | TCTACTAATAGTGGACAAAT+TGG | - | chr8.4:10570788-10570807 | None:intergenic | 30.0% |
| !! | TGGGGATTTTTGTTTATCTT+TGG | + | chr8.4:10572112-10572131 | MS.gene26707:intron | 30.0% |
| !! | TTGACATAATTTTCGAGATC+TGG | - | chr8.4:10570111-10570130 | None:intergenic | 30.0% |
| !!! | AGTTTTGGAGAATTAATGCA+AGG | - | chr8.4:10572395-10572414 | None:intergenic | 30.0% |
| !!! | TGATTTTTTGAAAACCTGTG+GGG | + | chr8.4:10572094-10572113 | MS.gene26707:intron | 30.0% |
| AATTATTGCAGGATTTGAGC+AGG | + | chr8.4:10572209-10572228 | MS.gene26707:intron | 35.0% | |
| AGATAAACAAAAATCCCCAC+AGG | - | chr8.4:10572111-10572130 | None:intergenic | 35.0% | |
| ATCAGATATTTGTAACCGCA+AGG | - | chr8.4:10571968-10571987 | None:intergenic | 35.0% | |
| CAAGAATCATTTAACCCCAA+AGG | - | chr8.4:10572485-10572504 | None:intergenic | 35.0% | |
| CAATGTAGAAGGTTTATCCT+TGG | + | chr8.4:10572730-10572749 | MS.gene26707:CDS | 35.0% | |
| CTCAATTATAGACATCTACC+AGG | - | chr8.4:10571268-10571287 | None:intergenic | 35.0% | |
| CTGTGAATATTAGCAAATGG+AGG | + | chr8.4:10571501-10571520 | MS.gene26707:intron | 35.0% | |
| GAATAGGCTATCAATGTAGA+AGG | + | chr8.4:10572719-10572738 | MS.gene26707:intron | 35.0% | |
| GCTTATCATGATAAGCACTT+TGG | + | chr8.4:10571000-10571019 | MS.gene26707:intron | 35.0% | |
| GTTTCTCTTATAGTTTCTCC+AGG | + | chr8.4:10571743-10571762 | MS.gene26707:intron | 35.0% | |
| TATGCGTTCATTCATCAAAC+CGG | - | chr8.4:10572428-10572447 | None:intergenic | 35.0% | |
| TATTCTTCTCTTCTTCAGAC+TGG | + | chr8.4:10571619-10571638 | MS.gene26707:intron | 35.0% | |
| TCGAGTAATGCTAAATAGGA+AGG | - | chr8.4:10571440-10571459 | None:intergenic | 35.0% | |
| TGTTCTGTCTCACTATTTAG+AGG | + | chr8.4:10571543-10571562 | MS.gene26707:CDS | 35.0% | |
| ! | ACCGGAGTTAAACTAAGTTT+TGG | - | chr8.4:10572410-10572429 | None:intergenic | 35.0% |
| ! | AGGAATCTTTTGGTAAGTCA+AGG | - | chr8.4:10572265-10572284 | None:intergenic | 35.0% |
| ! | ATATCTAAAGCTGTGGCAAT+AGG | + | chr8.4:10570743-10570762 | MS.gene26707:intron | 35.0% |
| ! | ATCTGAGAACTCATTTTCTC+AGG | - | chr8.4:10570398-10570417 | None:intergenic | 35.0% |
| ! | GTCAATCTTTTGTGTTACAC+AGG | + | chr8.4:10571329-10571348 | MS.gene26707:intron | 35.0% |
| ! | TCATATGCCTAAGGGATTTT+TGG | + | chr8.4:10570488-10570507 | MS.gene26707:intron | 35.0% |
| ! | TCCCTTAGGCATATGATTTT+TGG | - | chr8.4:10570484-10570503 | None:intergenic | 35.0% |
| ! | TGATGAGTTGGAAAAAGACA+TGG | + | chr8.4:10571828-10571847 | MS.gene26707:intron | 35.0% |
| !! | ATTGCCACAGCTTTAGATAT+AGG | - | chr8.4:10570743-10570762 | None:intergenic | 35.0% |
| !! | CCTATGTCTCTTTTTGATTC+CGG | + | chr8.4:10571145-10571164 | MS.gene26707:CDS | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+CGG | - | chr8.4:10570912-10570931 | None:intergenic | 35.0% |
| !! | TTGACTCTGATTTGGCTTAT+AGG | + | chr8.4:10572142-10572161 | MS.gene26707:intron | 35.0% |
| !!! | TGTTTTTTAATAGGCCCTCA+TGG | + | chr8.4:10571100-10571119 | MS.gene26707:intron | 35.0% |
| AAGAATCATACCACACGTTC+CGG | - | chr8.4:10571167-10571186 | None:intergenic | 40.0% | |
| AATCCCAAACAGTTCGATTG+GGG | + | chr8.4:10570831-10570850 | MS.gene26707:intron | 40.0% | |
| AGAAAATGGATACCTGGTAG+AGG | - | chr8.4:10570275-10570294 | None:intergenic | 40.0% | |
| AGCCAATCCAAAAATCCCTT+AGG | - | chr8.4:10570498-10570517 | None:intergenic | 40.0% | |
| CCCCTAAATCACTAGAAGTA+GGG | + | chr8.4:10571770-10571789 | MS.gene26707:intron | 40.0% | |
| CCCCTACTTCTAGTGATTTA+GGG | - | chr8.4:10571774-10571793 | None:intergenic | 40.0% | |
| CCCTAAATCACTAGAAGTAG+GGG | + | chr8.4:10571771-10571790 | MS.gene26707:intron | 40.0% | |
| CCCTACTTCTAGTGATTTAG+GGG | - | chr8.4:10571773-10571792 | None:intergenic | 40.0% | |
| CCGGAATCAAAAAGAGACAT+AGG | - | chr8.4:10571148-10571167 | None:intergenic | 40.0% | |
| GAATCCCAAACAGTTCGATT+GGG | + | chr8.4:10570830-10570849 | MS.gene26707:intron | 40.0% | |
| GGATCTAGAGATTGATGAGT+TGG | + | chr8.4:10571816-10571835 | MS.gene26707:intron | 40.0% | |
| GTGTTCAAGGAATTTGTCCA+AGG | - | chr8.4:10572750-10572769 | None:intergenic | 40.0% | |
| GTTAATTGCGTCGTGTAACT+GGG | + | chr8.4:10571939-10571958 | MS.gene26707:intron | 40.0% | |
| TACCATTGGAGCACATTAGA+CGG | + | chr8.4:10572885-10572904 | MS.gene26707:CDS | 40.0% | |
| TCCCCTAAATCACTAGAAGT+AGG | + | chr8.4:10571769-10571788 | MS.gene26707:intron | 40.0% | |
| TCCCCTACTTCTAGTGATTT+AGG | - | chr8.4:10571775-10571794 | None:intergenic | 40.0% | |
| TCGAGATCTGGAAGAATATC+TGG | - | chr8.4:10570099-10570118 | None:intergenic | 40.0% | |
| TCTTTGAACTGCGTAAGTCA+TGG | - | chr8.4:10571586-10571605 | None:intergenic | 40.0% | |
| TGAATCCCAAACAGTTCGAT+TGG | + | chr8.4:10570829-10570848 | MS.gene26707:intron | 40.0% | |
| TGGGTTATTGAGAAAAGCCA+GGG | + | chr8.4:10572788-10572807 | MS.gene26707:CDS | 40.0% | |
| TGTTAATTGCGTCGTGTAAC+TGG | + | chr8.4:10571938-10571957 | MS.gene26707:intron | 40.0% | |
| TTATAGACATCTACCAGGAG+TGG | - | chr8.4:10571263-10571282 | None:intergenic | 40.0% | |
| TTGGGTTATTGAGAAAAGCC+AGG | + | chr8.4:10572787-10572806 | MS.gene26707:CDS | 40.0% | |
| ! | TGTTTGGGATTCAGAAGTGA+AGG | - | chr8.4:10570822-10570841 | None:intergenic | 40.0% |
| ! | TTACCCATTGTTGGTTGGTA+AGG | + | chr8.4:10570702-10570721 | MS.gene26707:intron | 40.0% |
| !! | AGAGTTTGTTGTGCTTCTTG+TGG | + | chr8.4:10570590-10570609 | MS.gene26707:intron | 40.0% |
| !! | TCCTTGCTGTTGTACTTGTA+CGG | - | chr8.4:10570016-10570035 | None:intergenic | 40.0% |
| !! | TGCCTAAGGGATTTTTGGAT+TGG | + | chr8.4:10570493-10570512 | MS.gene26707:intron | 40.0% |
| !!! | GCACAGTTCTAGGAATCTTT+TGG | - | chr8.4:10572275-10572294 | None:intergenic | 40.0% |
| AAGAGACATAGGCTGAAGTC+TGG | - | chr8.4:10571137-10571156 | None:intergenic | 45.0% | |
| ACGCCTTACCAACCAACAAT+GGG | - | chr8.4:10570708-10570727 | None:intergenic | 45.0% | |
| ATCCCAAACAGTTCGATTGG+GGG | + | chr8.4:10570832-10570851 | MS.gene26707:intron | 45.0% | |
| ATCCGTCTAATGTGCTCCAA+TGG | - | chr8.4:10572890-10572909 | None:intergenic | 45.0% | |
| ATGTAGCCAACCTCACTTAG+TGG | + | chr8.4:10571884-10571903 | MS.gene26707:intron | 45.0% | |
| ATTGAGAAAAGCCAGGGGAA+GGG | + | chr8.4:10572794-10572813 | MS.gene26707:CDS | 45.0% | |
| CAACCAACAATGGGTAACGA+TGG | - | chr8.4:10570699-10570718 | None:intergenic | 45.0% | |
| CAACCTCACTTAGTGGGATA+AGG | + | chr8.4:10571891-10571910 | MS.gene26707:intron | 45.0% | |
| CAAGTACAACAGCAAGGACA+AGG | + | chr8.4:10570018-10570037 | MS.gene26707:CDS | 45.0% | |
| CACTGCAGATAGTGTACCAT+TGG | + | chr8.4:10572871-10572890 | MS.gene26707:CDS | 45.0% | |
| CATATAGTTGAAGCTGTGCC+AGG | + | chr8.4:10571682-10571701 | MS.gene26707:CDS | 45.0% | |
| CATCGTTACCCATTGTTGGT+TGG | + | chr8.4:10570697-10570716 | MS.gene26707:intron | 45.0% | |
| CTCAATAACCCAACCAGAGT+TGG | - | chr8.4:10572780-10572799 | None:intergenic | 45.0% | |
| CTTATCCCACTAAGTGAGGT+TGG | - | chr8.4:10571893-10571912 | None:intergenic | 45.0% | |
| CTTCTCTTCTTCAGACTGGA+AGG | + | chr8.4:10571623-10571642 | MS.gene26707:intron | 45.0% | |
| GAACATGAATCGCATAGCCT+TGG | - | chr8.4:10572239-10572258 | None:intergenic | 45.0% | |
| GGGTTATTGAGAAAAGCCAG+GGG | + | chr8.4:10572789-10572808 | MS.gene26707:CDS | 45.0% | |
| TACGCCTTACCAACCAACAA+TGG | - | chr8.4:10570709-10570728 | None:intergenic | 45.0% | |
| TAGTGATTTAGGGGAAGACC+TGG | - | chr8.4:10571764-10571783 | None:intergenic | 45.0% | |
| TATTGAGAAAAGCCAGGGGA+AGG | + | chr8.4:10572793-10572812 | MS.gene26707:CDS | 45.0% | |
| TCACTTAGTGGGATAAGGCT+TGG | + | chr8.4:10571896-10571915 | MS.gene26707:intron | 45.0% | |
| TCAGATCGTTGCTCGCATAT+TGG | + | chr8.4:10570412-10570431 | MS.gene26707:CDS | 45.0% | |
| TGGAAGGTTTCGTCAGTTCT+GGG | + | chr8.4:10571639-10571658 | MS.gene26707:CDS | 45.0% | |
| TGTAGCCAACCTCACTTAGT+GGG | + | chr8.4:10571885-10571904 | MS.gene26707:intron | 45.0% | |
| TTGAATGATTCAGCCACTCC+TGG | + | chr8.4:10571247-10571266 | MS.gene26707:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+AGG | - | chr8.4:10571897-10571916 | None:intergenic | 45.0% |
| ! | ATGGGCGGTTTTGCTAGAAT+AGG | - | chr8.4:10570671-10570690 | None:intergenic | 45.0% |
| ! | CGTTGCTCGCATATTGGTTA+AGG | + | chr8.4:10570418-10570437 | MS.gene26707:CDS | 45.0% |
| ! | GAAGGCAGAGATTTGATTCG+AGG | - | chr8.4:10570248-10570267 | None:intergenic | 45.0% |
| !! | AGTTGGCTACTTGGTGTTCA+AGG | - | chr8.4:10572763-10572782 | None:intergenic | 45.0% |
| !! | CTTTTTGATTCCGGAACGTG+TGG | + | chr8.4:10571154-10571173 | MS.gene26707:CDS | 45.0% |
| !! | TCAGCTATCTTGGCTCTGTT+TGG | - | chr8.4:10571052-10571071 | None:intergenic | 45.0% |
| ACAACAGCAAGGACAAGGAC+AGG | + | chr8.4:10570023-10570042 | MS.gene26707:CDS | 50.0% | |
| ACCAAGTAGCCAACTCTGGT+TGG | + | chr8.4:10572768-10572787 | MS.gene26707:CDS | 50.0% | |
| ACCTCAGCAAGCACAGTTCT+AGG | - | chr8.4:10572285-10572304 | None:intergenic | 50.0% | |
| ATACCTGGTAGAGGCGAAGA+AGG | - | chr8.4:10570266-10570285 | None:intergenic | 50.0% | |
| CAACAGCAAGGACAAGGACA+GGG | + | chr8.4:10570024-10570043 | MS.gene26707:CDS | 50.0% | |
| CCAAGTAGCCAACTCTGGTT+GGG | + | chr8.4:10572769-10572788 | MS.gene26707:CDS | 50.0% | |
| CTGGAAGGTTTCGTCAGTTC+TGG | + | chr8.4:10571638-10571657 | MS.gene26707:CDS | 50.0% | |
| GAACACCAAGTAGCCAACTC+TGG | + | chr8.4:10572764-10572783 | MS.gene26707:CDS | 50.0% | |
| GACCCCCAATCGAACTGTTT+GGG | - | chr8.4:10570837-10570856 | None:intergenic | 50.0% | |
| GAGCCATCGTTACCCATTGT+TGG | + | chr8.4:10570693-10570712 | MS.gene26707:intron | 50.0% | |
| GAGCTGTTCGACAGTGTAAG+CGG | - | chr8.4:10570055-10570074 | None:intergenic | 50.0% | |
| GCCGTACAAGTACAACAGCA+AGG | + | chr8.4:10570012-10570031 | MS.gene26707:CDS | 50.0% | |
| GGATTTGAGCAGGCAATCCA+AGG | + | chr8.4:10572219-10572238 | MS.gene26707:intron | 50.0% | |
| TGACCCCCAATCGAACTGTT+TGG | - | chr8.4:10570838-10570857 | None:intergenic | 50.0% | |
| ! | TCCTAGAACTGTGCTTGCTG+AGG | + | chr8.4:10572281-10572300 | MS.gene26707:CDS | 50.0% |
| !! | ATGGGTAACGATGGCTCTGA+TGG | - | chr8.4:10570690-10570709 | None:intergenic | 50.0% |
| !! | TGGGTAACGATGGCTCTGAT+GGG | - | chr8.4:10570689-10570708 | None:intergenic | 50.0% |
| CCCAACCAGAGTTGGCTACT+TGG | - | chr8.4:10572772-10572791 | None:intergenic | 55.0% | |
| CGTGTAACTGGGAAGCCTTG+CGG | + | chr8.4:10571950-10571969 | MS.gene26707:intron | 55.0% | |
| TGGAGCTGGCATAGCCATGA+GGG | - | chr8.4:10571117-10571136 | None:intergenic | 55.0% | |
| ! | CATAGGCTGAAGTCTGGAGC+TGG | - | chr8.4:10571131-10571150 | None:intergenic | 55.0% |
| !! | GTAACGATGGCTCTGATGGG+CGG | - | chr8.4:10570686-10570705 | None:intergenic | 55.0% |
| CAGCAAGGACAAGGACAGGG+AGG | + | chr8.4:10570027-10570046 | MS.gene26707:CDS | 60.0% | |
| CTGCCTTCTTCGCCTCTACC+AGG | + | chr8.4:10570260-10570279 | MS.gene26707:CDS | 60.0% | |
| CTGGAGCTGGCATAGCCATG+AGG | - | chr8.4:10571118-10571137 | None:intergenic | 60.0% | |
| ! | CGATGAGTTGACCCTTCCCC+TGG | - | chr8.4:10572808-10572827 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 10569988 | 10572928 | 10569988 | ID=MS.gene26707 |
| chr8.4 | mRNA | 10569988 | 10572928 | 10569988 | ID=MS.gene26707.t1;Parent=MS.gene26707 |
| chr8.4 | exon | 10569988 | 10570137 | 10569988 | ID=MS.gene26707.t1.exon1;Parent=MS.gene26707.t1 |
| chr8.4 | CDS | 10569988 | 10570137 | 10569988 | ID=cds.MS.gene26707.t1;Parent=MS.gene26707.t1 |
| chr8.4 | exon | 10570225 | 10570281 | 10570225 | ID=MS.gene26707.t1.exon2;Parent=MS.gene26707.t1 |
| chr8.4 | CDS | 10570225 | 10570281 | 10570225 | ID=cds.MS.gene26707.t1;Parent=MS.gene26707.t1 |
| chr8.4 | exon | 10570389 | 10570439 | 10570389 | ID=MS.gene26707.t1.exon3;Parent=MS.gene26707.t1 |
| chr8.4 | CDS | 10570389 | 10570439 | 10570389 | ID=cds.MS.gene26707.t1;Parent=MS.gene26707.t1 |
| chr8.4 | exon | 10571113 | 10571175 | 10571113 | ID=MS.gene26707.t1.exon4;Parent=MS.gene26707.t1 |
| chr8.4 | CDS | 10571113 | 10571175 | 10571113 | ID=cds.MS.gene26707.t1;Parent=MS.gene26707.t1 |
| chr8.4 | exon | 10571514 | 10571564 | 10571514 | ID=MS.gene26707.t1.exon5;Parent=MS.gene26707.t1 |
| chr8.4 | CDS | 10571514 | 10571564 | 10571514 | ID=cds.MS.gene26707.t1;Parent=MS.gene26707.t1 |
| chr8.4 | exon | 10571637 | 10571703 | 10571637 | ID=MS.gene26707.t1.exon6;Parent=MS.gene26707.t1 |
| chr8.4 | CDS | 10571637 | 10571703 | 10571637 | ID=cds.MS.gene26707.t1;Parent=MS.gene26707.t1 |
| chr8.4 | exon | 10572220 | 10572302 | 10572220 | ID=MS.gene26707.t1.exon7;Parent=MS.gene26707.t1 |
| chr8.4 | CDS | 10572220 | 10572302 | 10572220 | ID=cds.MS.gene26707.t1;Parent=MS.gene26707.t1 |
| chr8.4 | exon | 10572725 | 10572928 | 10572725 | ID=MS.gene26707.t1.exon8;Parent=MS.gene26707.t1 |
| chr8.4 | CDS | 10572725 | 10572928 | 10572725 | ID=cds.MS.gene26707.t1;Parent=MS.gene26707.t1 |
| Gene Sequence |
| Protein sequence |
